# terms

id: PBO:0084508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meiosis-specific transcription factor; required for exit from pachytene and for full meiotic recombination; activates middle sporulation genes; competes with Sum1p for binding to promoters containing middle sporulation elements (MSE)","termid":"PBO:0084508"}


id: GO:0009191
data:
  {"annotated_genes":["SJAG_05314","SJAG_00027","SJAG_03828","SJAG_02945","SJAG_02135","SJAG_00461","SJAG_02009","SJAG_04048","SJAG_03676","SJAG_04192","SJAG_03373","SJAG_01310","SJAG_03852","SJAG_00839","SJAG_00633","SJAG_00685","SJAG_02796","SJAG_03977","SJAG_04495","SJAG_00605","SJAG_02369","SJAG_06622","SJAG_03660","SJAG_03903","SJAG_06621","SJAG_02107","SJAG_04334"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109440],"is_not":false,"summary":null,"term":"GO:0009191"},{"annotations":[105526,101942,105059,99515,105062,105528,105529,94405,94134,105531,105530,100586,99774,105532,112467,101576,105527,105061,101575,105063,101577,91150,101941,90660,105060,105064,105065],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"},{"annotations":[100589],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006096"},{"annotations":[84799],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061613"},{"annotations":[94323,107703],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061688"},{"annotations":[72010,75050],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0045820"},{"annotations":[110087],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006256"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside diphosphate catabolic process","termid":"GO:0009134"},{"relation_name":"is_a","term_name":"ribonucleoside diphosphate metabolic process","termid":"GO:0009185"}],"gene_count":27,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00461":null,"SJAG_00605":null,"SJAG_00633":null,"SJAG_00685":null,"SJAG_00839":null,"SJAG_01310":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02369":null,"SJAG_02796":null,"SJAG_02945":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03676":null,"SJAG_03828":null,"SJAG_03852":null,"SJAG_03903":null,"SJAG_03977":null,"SJAG_04048":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_05314":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"ribonucleoside diphosphate catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"ribonucleoside diphosphate breakdown","type":"exact"},{"name":"ribonucleoside diphosphate catabolism","type":"exact"},{"name":"ribonucleoside diphosphate degradation","type":"exact"}],"termid":"GO:0009191","terms_by_termid":{"GO:0006096":null,"GO:0006256":null,"GO:0009191":null,"GO:0045820":null,"GO:0061613":null,"GO:0061621":null,"GO:0061688":null}}


id: PBO:0047961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FRAT regulator of WNT signaling pathway 1","termid":"PBO:0047961"}


id: PBO:0086341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pseudosubstrate inhibitor of the APC/C; suppresses APC/C [Cdh1]-mediated proteolysis of mitotic cyclins; associates with Cdh1p, Bmh1p and Bmh2p; cell cycle regulated protein; the anaphase-promoting complex/cyclosome is also known as APC/C","termid":"PBO:0086341"}


id: PBO:0091968
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"III:g.1774235_1774236insGATC","termid":"PBO:0091968"}


id: FYPO:0001091
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to heat shock is normal (i.e. indistinguishable from wild type). Heat shock is a form of heat stress in which cells are briefly exposed to a very high temperature.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular response to stress during vegetative growth","termid":"FYPO:0000968"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0001320","FYPO:0000257","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal cellular response to heat shock","synonyms":[{"name":"normal cellular response to heat shock during mitotic cell cycle","type":"related"},{"name":"normal cellular response to heat shock during vegetative growth","type":"exact"}],"termid":"FYPO:0001091"}


id: PBO:0041419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C8 gamma chain","termid":"PBO:0041419"}


id: GO:0047255
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: galactogen + UDP-galactose = 1,6-beta-D-galctosylgalactogen + UDP.","definition_xrefs":["EC:2.4.1.205","MetaCyc:2.4.1.205-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-galactosyltransferase activity","termid":"GO:0035250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016757","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"galactogen 6-beta-galactosyltransferase activity","synonyms":[{"name":"1,6-D-galactosyltransferase activity","type":"related"},{"name":"UDP-galactose:galactogen beta-1,6-D-galactosyltransferase activity","type":"related"},{"name":"UDPgalactose:galactogen beta-1,6-D-galactosyltransferase activity","type":"related"},{"name":"beta-(1,6)-D-galactosyltransferase activity","type":"related"},{"name":"galactogen 6beta-galactosyltransferase activity","type":"related"},{"name":"uridine diphosphogalactose-galactogen galactosyltransferase activity","type":"related"}],"termid":"GO:0047255"}


id: GO:1900077
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to insulin stimulus.","definition_xrefs":["GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"is_a","term_name":"regulation of cellular response to insulin stimulus","termid":"GO:1900076"},{"relation_name":"negatively_regulates","term_name":"cellular response to insulin stimulus","termid":"GO:0032869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cellular response to insulin stimulus","synonyms":[{"name":"down regulation of cellular response to insulin stimulus","type":"exact"},{"name":"down-regulation of cellular response to insulin stimulus","type":"exact"},{"name":"downregulation of cellular response to insulin stimulus","type":"exact"},{"name":"inhibition of cellular response to insulin stimulus","type":"narrow"}],"termid":"GO:1900077"}


id: PBO:0000282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sad1 interacting factor 3 (predicted)","termid":"PBO:0000282"}


id: PBO:0054362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1755","termid":"PBO:0054362"}


id: PBO:0057689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1278","termid":"PBO:0057689"}


id: GO:0048521
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of behavior, the internally coordinated responses (actions or inactions) of whole living organisms (individuals or groups) to internal or external stimuli.","definition_xrefs":["GOC:jid","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of behavior","termid":"GO:0050795"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"negatively_regulates","term_name":"behavior","termid":"GO:0007610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of behavior","synonyms":[{"name":"down regulation of behavior","type":"exact"},{"name":"down-regulation of behavior","type":"exact"},{"name":"downregulation of behavior","type":"exact"},{"name":"inhibition of behavior","type":"narrow"}],"termid":"GO:0048521"}


id: GO:0141137
data:
  {"annotated_genes":["SJAG_02773","SJAG_03752","SJAG_03599","SJAG_04758","SJAG_03145","SJAG_07011","SJAG_02571","SJAG_00641","SJAG_00896","SJAG_04005","SJAG_05192","SJAG_02458","SJAG_03884","SJAG_00441","SJAG_04038","SJAG_00868","SJAG_01016","SJAG_02385","SJAG_02906","SJAG_03366","SJAG_00440","SJAG_02798","SJAG_04596","SJAG_03694","SJAG_02303","SJAG_01110","SJAG_03033","SJAG_05313","SJAG_01513","SJAG_02170","SJAG_00045","SJAG_02589","SJAG_03668","SJAG_02768","SJAG_05020","SJAG_02846","SJAG_03576","SJAG_01465","SJAG_02466","SJAG_01711","SJAG_00873","SJAG_00584","SJAG_03758","SJAG_00581","SJAG_02927","SJAG_02500","SJAG_00735","SJAG_02329","SJAG_04613","SJAG_01658","SJAG_04274","SJAG_04755","SJAG_02447","SJAG_04989","SJAG_03839","SJAG_02549","SJAG_03441","SJAG_03431","SJAG_03579","SJAG_02981","SJAG_02254","SJAG_01804","SJAG_00743","SJAG_00746","SJAG_01611","SJAG_03776","SJAG_01475","SJAG_03944","SJAG_00739","SJAG_04205","SJAG_03787","SJAG_01111","SJAG_01230","SJAG_02066","SJAG_02541","SJAG_01653","SJAG_00769","SJAG_00349","SJAG_02314","SJAG_04576","SJAG_04213","SJAG_02869","SJAG_00184","SJAG_01325","SJAG_00087","SJAG_02872","SJAG_01622","SJAG_04097","SJAG_04194"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105605,84356,113697,103028,92026,97098,84006,94376,89923,88937,113013,89653,111494,93961,104013,94640,99497,110517,113649,85055,101147,86240,92586,114041,88442,90273,90346,105203,83858,90443,102875,109446,92031,91590,113542,111123,101890,91615,86755,85289,101749,106609,86860,90318,109280,92794,98910,103459,110830,111810,111369,105483,112402,99248,101139,93229,84538,109263,113361,84177,90259,86874,97684,100689,95271,95517,107881,110354,112464,106744,109105,105718,113627,94803,108677,111508,90778,87558,103818,103572,110427,84684,90156,85458,110344,85968,112652,104594,90289],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045815"}]},"cv_name":"biological_process","definition":"An epigenetic process that increases gene expression at specific genomic regions through chromatin remodeling either by modifying higher order chromatin fiber structure, nucleosomal histones, or the cytosine DNA demethylation.","definition_xrefs":["PMID:36618446"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of gene expression","termid":"GO:0010628"},{"relation_name":"is_a","term_name":"epigenetic regulation of gene expression","termid":"GO:0040029"}],"gene_count":89,"genes_by_uniquename":{"SJAG_00045":null,"SJAG_00087":null,"SJAG_00184":null,"SJAG_00349":null,"SJAG_00440":null,"SJAG_00441":null,"SJAG_00581":null,"SJAG_00584":null,"SJAG_00641":null,"SJAG_00735":null,"SJAG_00739":null,"SJAG_00743":null,"SJAG_00746":null,"SJAG_00769":null,"SJAG_00868":null,"SJAG_00873":null,"SJAG_00896":null,"SJAG_01016":null,"SJAG_01110":null,"SJAG_01111":null,"SJAG_01230":null,"SJAG_01325":null,"SJAG_01465":null,"SJAG_01475":null,"SJAG_01513":null,"SJAG_01611":null,"SJAG_01622":null,"SJAG_01653":null,"SJAG_01658":null,"SJAG_01711":null,"SJAG_01804":null,"SJAG_02066":null,"SJAG_02170":null,"SJAG_02254":null,"SJAG_02303":null,"SJAG_02314":null,"SJAG_02329":null,"SJAG_02385":null,"SJAG_02447":null,"SJAG_02458":null,"SJAG_02466":null,"SJAG_02500":null,"SJAG_02541":null,"SJAG_02549":null,"SJAG_02571":null,"SJAG_02589":null,"SJAG_02768":null,"SJAG_02773":null,"SJAG_02798":null,"SJAG_02846":null,"SJAG_02869":null,"SJAG_02872":null,"SJAG_02906":null,"SJAG_02927":null,"SJAG_02981":null,"SJAG_03033":null,"SJAG_03145":null,"SJAG_03366":null,"SJAG_03431":null,"SJAG_03441":null,"SJAG_03576":null,"SJAG_03579":null,"SJAG_03599":null,"SJAG_03668":null,"SJAG_03694":null,"SJAG_03752":null,"SJAG_03758":null,"SJAG_03776":null,"SJAG_03787":null,"SJAG_03839":null,"SJAG_03884":null,"SJAG_03944":null,"SJAG_04005":null,"SJAG_04038":null,"SJAG_04097":null,"SJAG_04194":null,"SJAG_04205":null,"SJAG_04213":null,"SJAG_04274":null,"SJAG_04576":null,"SJAG_04596":null,"SJAG_04613":null,"SJAG_04755":null,"SJAG_04758":null,"SJAG_04989":null,"SJAG_05020":null,"SJAG_05192":null,"SJAG_05313":null,"SJAG_07011":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0006325","GO:0010467"],"is_obsolete":false,"name":"positive regulation of gene expression, epigenetic","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of gene expression, epigenetic","type":"exact"},{"name":"up regulation of gene expression, epigenetic","type":"exact"},{"name":"up-regulation of gene expression, epigenetic","type":"exact"},{"name":"upregulation of gene expression, epigenetic","type":"exact"}],"termid":"GO:0141137","terms_by_termid":{"GO:0045815":null}}


id: PBO:0000142
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.5.3.11","termid":"PBO:0000142"}


id: PBO:0067800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 102","termid":"PBO:0067800"}


id: PBO:0069787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1073, pseudogene","termid":"PBO:0069787"}


id: PBO:0026894
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_phosphorylation_of_RNA_polymerase_II_C-terminal_domain_serine_2_residues_during_nitrogen_starvation","termid":"PBO:0026894"}


id: PBO:0065167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein C receptor","termid":"PBO:0065167"}


id: FYPO:0000055
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form microtubules that are longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton morphology during vegetative growth","termid":"FYPO:0001418"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000054","FYPO:0002399"],"is_obsolete":false,"name":"long microtubules","synonyms":[{"name":"elongated microtubules","type":"exact"},{"name":"long microtubules during mitotic cell cycle","type":"related"},{"name":"long microtubules during vegetative growth","type":"exact"},{"name":"microtubule organization defects, long microtubules","type":"exact"}],"termid":"FYPO:0000055"}


id: GO:1905608
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of presynapse assembly.","definition_xrefs":["GOC:PARL","PMID:25533483","GO_REF:0000058","GOC:bc","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"is_a","term_name":"regulation of presynapse assembly","termid":"GO:1905606"},{"relation_name":"positively_regulates","term_name":"presynapse assembly","termid":"GO:0099054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"positive regulation of presynapse assembly","synonyms":[{"name":"activation of presynapse assembly","type":"narrow"},{"name":"activation of presynapse biogenesis","type":"narrow"},{"name":"activation of presynaptic terminal assembly","type":"narrow"},{"name":"positive regulation of presynapse biogenesis","type":"exact"},{"name":"positive regulation of presynaptic terminal assembly","type":"exact"},{"name":"up regulation of presynapse assembly","type":"exact"},{"name":"up regulation of presynapse biogenesis","type":"exact"},{"name":"up regulation of presynaptic terminal assembly","type":"exact"},{"name":"up-regulation of presynapse assembly","type":"exact"},{"name":"up-regulation of presynapse biogenesis","type":"exact"},{"name":"up-regulation of presynaptic terminal assembly","type":"exact"},{"name":"upregulation of presynapse assembly","type":"exact"},{"name":"upregulation of presynapse biogenesis","type":"exact"},{"name":"upregulation of presynaptic terminal assembly","type":"exact"}],"termid":"GO:1905608"}


id: PBO:0031174
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mitotic_catastrophe_with_cut,_small_cell","termid":"PBO:0031174"}


id: PBO:0088808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongator complex associated protein Kti12","termid":"PBO:0088808"}


id: PBO:0088171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Xanthine-guanine phosphoribosyl transferase; required for xanthine utilization and for optimal utilization of guanine","termid":"PBO:0088171"}


id: GO:1901449
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of response to butan-1-ol.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of response to alcohol","termid":"GO:1901420"},{"relation_name":"is_a","term_name":"regulation of response to butan-1-ol","termid":"GO:1901448"},{"relation_name":"negatively_regulates","term_name":"response to butan-1-ol","termid":"GO:1901422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of response to butan-1-ol","synonyms":[{"name":"down regulation of response to butan-1-ol","type":"exact"},{"name":"down-regulation of response to butan-1-ol","type":"exact"},{"name":"downregulation of response to butan-1-ol","type":"exact"},{"name":"inhibition of response to butan-1-ol","type":"narrow"}],"termid":"GO:1901449"}


id: PBO:0002776
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae VHT1","termid":"PBO:0002776"}


id: PBO:0072637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras suppressor protein 1 pseudogene 3","termid":"PBO:0072637"}


id: PR:G2TRT3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tam14 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRT3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tam14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC330.20","synonyms":[{"name":"Spom972h-tam14","type":"exact"},{"name":"transcripts altered in meiosis protein 14 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:G2TRT3"}


id: PBO:0051826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon regulatory factor 2 binding protein 2","termid":"PBO:0051826"}


id: PBO:0043102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbohydrate sulfotransferase 14","termid":"PBO:0043102"}


id: PBO:0057453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 572","termid":"PBO:0057453"}


id: PBO:0028073
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_single_or_double_cell_division,_arrest_with_anucleate_cell_(obsolete_FYPO:0003761)","termid":"PBO:0028073"}


id: PBO:0048869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GOLGA4 antisense RNA 1","termid":"PBO:0048869"}


id: PR:O60153
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC19C7.04c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60153"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C19C7.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19C7.04c","synonyms":[{"name":"Spom972h-SPBC19C7.04c","type":"exact"}],"termid":"PR:O60153"}


id: GO:0035324
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An intercellular bridge that connects the germline cells of a female cyst.","definition_xrefs":["PMID:9635420"],"direct_ancestors":[{"relation_name":"is_a","term_name":"germline ring canal","termid":"GO:0045172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"female germline ring canal","synonyms":[{"name":"nurse cell ring canal","type":"narrow"},{"name":"ovarian ring canal","type":"narrow"}],"termid":"GO:0035324"}


id: PATO:0001750
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A paedomorphic growth quality which is due to a delayed onset.","definition_xrefs":["PATOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"paedomorphic growth","termid":"PATO:0001749"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"postdisplaced growth","termid":"PATO:0001750"}


id: PBO:0039305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALK and LTK ligand 2","termid":"PBO:0039305"}


id: PBO:0081051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCHC-type containing 9","termid":"PBO:0081051"}


id: GO:0090582
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + D-fructose(out) = protein cysteine + D-fructose-1-phosphate(in).","definition_xrefs":["PMID:8626640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-phosphocysteine-sugar phosphotransferase activity","termid":"GO:0090563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0003824","GO:0005215","GO:0016740"],"is_obsolete":false,"name":"protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity","termid":"GO:0090582"}


id: FYPO:0007855
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal during mitotic spindle assembly checkpoint signaling.","definition_xrefs":["PomBase:mah","PMID:12606573"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein phosphorylation during vegetative growth","termid":"FYPO:0001838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0002494","FYPO:0001985","FYPO:0002274","FYPO:0001320"],"is_obsolete":false,"name":"decreased protein phosphorylation during mitotic spindle assembly checkpoint signaling","synonyms":[{"name":"increased duration of protein localisation to spindle during meiosis I","type":"exact"},{"name":"increased duration of protein localization to meiosis I spindle","type":"exact"},{"name":"increased duration of protein localization to meiotic spindle during meiosis I","type":"exact"},{"name":"increased duration of protein localization to spindle during first meiotic nuclear division","type":"exact"},{"name":"prolonged protein localization to spindle during meiosis I","type":"exact"}],"termid":"FYPO:0007855"}


id: PBO:0030944
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_microtubule_polymerization_or_depolymerization","termid":"PBO:0030944"}


id: PBO:0014271
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae IDI1","termid":"PBO:0014271"}


id: GO:0051876
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of pigment granules within a cell towards the cell periphery.","definition_xrefs":["GOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of pigment granule localization","termid":"GO:0051905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"pigment granule dispersal","termid":"GO:0051876"}


id: PBO:0049486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H1-8 pseudogene 2","termid":"PBO:0049486"}


id: PBO:0080728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WW and C2 domain containing 2","termid":"PBO:0080728"}


id: PBO:0044585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"drebrin like","termid":"PBO:0044585"}


id: PBO:0047265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 245 member B","termid":"PBO:0047265"}


id: PBO:0045670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein cytoplasmic 1 intermediate chain 1","termid":"PBO:0045670"}


id: PBO:0005477
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae MMS2","termid":"PBO:0005477"}


id: PBO:0069400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 660, pseudogene","termid":"PBO:0069400"}


id: PBO:0040087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arylsulfatase G","termid":"PBO:0040087"}


id: PBO:0050910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon induced protein with tetratricopeptide repeats 1 pseudogene 1","termid":"PBO:0050910"}


id: GO:0016790
data:
  {"annotated_genes":["SJAG_00734","SJAG_04007","SJAG_00774","SJAG_01396","SJAG_04895","SJAG_04107","SJAG_02985","SJAG_00902","SJAG_02268","SJAG_02056","SJAG_01596","SJAG_03377","SJAG_02769"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87588,75619],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003986"},{"annotations":[96870],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016297"},{"annotations":[92958,104846,103604,97769],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047617"},{"annotations":[96450],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004416"},{"annotations":[96683,107040,97062,89658,105134],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008474"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: RCO-SR' + H2O = RCOOH + HSR'. This reaction is the hydrolysis of a thiolester bond, an ester formed from a carboxylic acid and a thiol (i.e., RCO-SR'), such as that found in acetyl-coenzyme A.","definition_xrefs":["EC:3.1.2.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on ester bonds","termid":"GO:0016788"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00734":null,"SJAG_00774":null,"SJAG_00902":null,"SJAG_01396":null,"SJAG_01596":null,"SJAG_02056":null,"SJAG_02268":null,"SJAG_02769":null,"SJAG_02985":null,"SJAG_03377":null,"SJAG_04007":null,"SJAG_04107":null,"SJAG_04895":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787","GO:0016788"],"is_obsolete":false,"name":"thiolester hydrolase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"thiolesterase activity","type":"exact"}],"termid":"GO:0016790","terms_by_termid":{"GO:0003986":null,"GO:0004416":null,"GO:0008474":null,"GO:0016297":null,"GO:0047617":null}}


id: PR:O60068
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A LYR motif-containing protein 4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03832","PANTHER:PTHR13166:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein isd11 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC13G1.06c","secondary_identifiers":["UniProtKB:O60068"],"synonyms":[{"name":"Spom972h-LYRM4","type":"exact"}],"termid":"PR:O60068"}


id: GO:0075196
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of a haustorium mother cell of the symbiont to its host via adhesion molecules. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adhesion of symbiont infection structure to host","termid":"GO:0075001"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adhesion of symbiont haustorium mother cell to host","synonyms":[{"name":"adhesion of symbiont haustorium mother cell to host during symbiotic interaction","type":"exact"}],"termid":"GO:0075196"}


id: PBO:0030649
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_methylamine_level","termid":"PBO:0030649"}


id: PBO:0065446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, ATPase 3 pseudogene 1","termid":"PBO:0065446"}


id: GO:0102521
data:
  {"annotated_genes":["SJAG_04265"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[109954],"is_not":false,"summary":null,"term":"GO:0102521"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: pyruvate + S-adenosyl-L-methionine + N1-methylguanine37 in tRNAPhe = L-methionine + 5'-deoxyadenosine + carbon dioxide + H2O + 4-demethylwyosine37 in tRNAPhe.","definition_xrefs":["GOC:pz","RHEA:36347","PMID:34184886"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxo-acid-lyase activity","termid":"GO:0016833"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04265":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140101","GO:0016829","GO:0003674","GO:0003824","GO:0140098"],"is_obsolete":false,"name":"tRNA-4-demethylwyosine synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:4.1.3.44","MetaCyc:RXN-14516"],"termid":"GO:0102521","terms_by_termid":{"GO:0102521":null}}


id: GO:1903439
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of calcitonin family receptor activity. Calcitonin family receptors may form dimers, trimers or tetramers; adrenomedullin and amylin receptors have only been observed as dimers so far.","definition_xrefs":["GO_REF:0000088","PMID:10871296","GOC:TermGenie","PMID:12037140","GOC:bhm","PMID:18687416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor complex","termid":"GO:0097648"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"calcitonin family receptor complex","termid":"GO:1903439"}


id: GO:0043463
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of rhamnose, the hexose 6-deoxy-L-mannose.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of carbohydrate catabolic process","termid":"GO:0043470"},{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"regulates","term_name":"rhamnose catabolic process","termid":"GO:0019301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"regulation of rhamnose catabolic process","synonyms":[{"name":"regulation of rhamnose breakdown","type":"exact"},{"name":"regulation of rhamnose catabolism","type":"exact"},{"name":"regulation of rhamnose degradation","type":"exact"}],"termid":"GO:0043463"}


id: FYPO:0005732
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which arginase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal arginase activity","termid":"FYPO:0005730"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000661","FYPO:0000707","FYPO:0001985","FYPO:0000654"],"is_obsolete":false,"name":"abolished arginase activity","synonyms":[{"name":"arginase activity abolished","type":"exact"}],"termid":"FYPO:0005732"}


id: PR:000050398
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A spindle pole body-associated protein cut12 (Schizosaccharomyces pombe) that has not been phosphorylated at positions equivalent to Thr-75 and Thr-78 of the amino acid sequence represented by UniProtKB:O59755. Example: UniProtKB:O59755, Thr-75/Thr-78, PR:000026291.","definition_xrefs":["PMID:23333317","PRO:DAN","PomBase:VW"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle pole body-associated protein cut12 (Schizosaccharomyces pombe)","termid":"PR:000050397"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cut12/UnPhos(T75,T78)","pombase_gene_id":"SPBC649.05","synonyms":[{"name":"Spom-cut12/UnPhos:1","type":"exact"},{"name":"UniProtKB:O59755, Thr-75/Thr-78, PR:000026291","type":"narrow"},{"name":"cut12/UnPhos(T75,T78)","type":"exact"}],"termid":"PR:000050398"}


id: GO:0070337
data:
  {"annotated_genes":["SJAG_04671"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95489],"is_not":false,"summary":null,"term":"GO:0070337"}]},"cv_name":"molecular_function","definition":"Binding to a 3'-flap structure in DNA. A DNA flap structure is one in which a single-stranded 3'-end of DNA or RNA protrudes from a double-stranded DNA molecule.","definition_xrefs":["GOC:mah","PMID:15189154"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flap-structured DNA binding","termid":"GO:0070336"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04671":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0005488","GO:0003677","GO:0003674"],"is_obsolete":false,"name":"3'-flap-structured DNA binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0070337","terms_by_termid":{"GO:0070337":null}}


id: PBO:0059272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L35 pseudogene 1","termid":"PBO:0059272"}


id: FYECO:0000023
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in the presence of cAMP. Presence can either imply exogenous addition of the chemical or the action of adenylate cyclase.","definition_xrefs":["PomBase:al"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE FYECO:0000023 presence of 3',5'-cyclic AMP (obsolete FYECO:0000023)","termid":"FYECO:0000023"}


id: FYPO:0006596
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more RNAs transcribed from genes encoding flocculins measured in a cell is higher than normal (i.e. higher than observed in wild-type cells).","definition_xrefs":["PomBase:mah","PMID:29878109"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0006551","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased level of flocculin gene mRNA during vegetative growth","synonyms":[{"name":"increased flocculin gene mRNA accumulation during vegetative growth","type":"related"},{"name":"increased level of flocculin gene RNA during vegetative growth","type":"exact"},{"name":"increased level of flocculin gene mRNA during mitotic cell cycle","type":"related"},{"name":"increased level of flocculin gene transcripts during vegetative growth","type":"exact"}],"termid":"FYPO:0006596"}


id: MOD:01346
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to an N4-hexosyl-L-asparagine.","definition_xrefs":["PubMed:11567090","PubMed:11112526","Unimod:41#N","PubMed:15279557","PubMed:6540775"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N4-glycosyl-L-asparagine","termid":"MOD:00160"},{"relation_name":"is_a","term_name":"hexosylated residue","termid":"MOD:00434"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"N4-hexosylated asparagine","synonyms":[{"name":"Hex","type":"related"},{"name":"Hexose","type":"related"}],"termid":"MOD:01346"}


id: PBO:0063771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHD finger protein 2 pseudogene 2","termid":"PBO:0063771"}


id: PBO:0074185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 38 member 6","termid":"PBO:0074185"}


id: PBO:0066339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of chromosome condensation 2 pseudogene 1","termid":"PBO:0066339"}


id: PBO:0068824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 62, pseudogene","termid":"PBO:0068824"}


id: PBO:0087132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding protein involved in asymmetric localization of ASH1 mRNA; represses translation of ASH1 mRNA, an effect reversed by Yck1p-dependent phosphoryation; regulates telomere position effect and length; similarity to hnRNP-K","termid":"PBO:0087132"}


id: FYPO:0007817
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which a cell has a nucleus in an abnormal location during G0 phase. The normal location is at the midpoint of the long axis of the cell.","definition_xrefs":["PMID:34147496","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized nucleus","termid":"FYPO:0002069"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"mislocalized nucleus during G0","synonyms":[{"name":"abnormal nucleus location during G0","type":"exact"},{"name":"abnormal nucleus position during G0","type":"exact"},{"name":"displaced nucleus during G0","type":"exact"},{"name":"mislocalised nucleus during G0","type":"exact"},{"name":"mislocalized nucleus during cell quiescence","type":"exact"},{"name":"mislocalized nucleus during quiescence","type":"exact"},{"name":"misplaced nuclei during G0","type":"exact"},{"name":"misplaced nucleus during G0","type":"exact"},{"name":"nuclear displacement during G0","type":"exact"}],"termid":"FYPO:0007817"}


id: PBO:0085927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; member of the seripauperin multigene family encoded mainly in subtelomeric regions; SWAT-GFP fusion protein localizes to the endoplasmic reticulum and vacuole, while mCherry fusion localizes to just the vacuole; identical to Pau21p; encodes two proteins that are translated from two different start codons","termid":"PBO:0085927"}


id: PBO:0042372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD200 like, pseudogene","termid":"PBO:0042372"}


id: PBO:0059360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S17 pseudogene 6","termid":"PBO:0059360"}


id: GO:1990726
data:
  {"annotated_genes":["SJAG_01327","SJAG_02469","SJAG_05240","SJAG_03070","SJAG_03954","SJAG_04880","SJAG_03460"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[91956,102456,104657,106065,109000,111042,112513],"is_not":false,"summary":null,"term":"GO:1990726"}]},"cv_name":"cellular_component","definition":"A conserved, heteroheptameric, cytoplasmic protein complex composed of Lsm1, Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Pat1, or orthologs thereof, that shows a strong binding preference for oligoadenylated RNAs over polyadenylated RNAs. May bind further associated proteins. Facilitates the deadenylation-dependent decapping of mRNA in the P-body thereby regulating mRNA decay and subsequent degradation by the 5' to 3' pathway.","definition_xrefs":["PMID:23620288","PMID:27627834","PMID:28768202","GOC:krc","GOC:bhm","PMID:19121818","PMID:24139796"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Sm-like protein family complex","termid":"GO:0120114"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01327":null,"SJAG_02469":null,"SJAG_03070":null,"SJAG_03460":null,"SJAG_03954":null,"SJAG_04880":null,"SJAG_05240":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Lsm1-7-Pat1 complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990726","terms_by_termid":{"GO:1990726":null}}


id: PBO:0056805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MFSD2 lysolipid transporter B, sphingolipid","termid":"PBO:0056805"}


id: GO:0071264
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of translation initiation, as a result of deprivation of nourishment.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of translation in response to stress","termid":"GO:0032056"},{"relation_name":"is_a","term_name":"positive regulation of translational initiation in response to stress","termid":"GO:0032058"},{"relation_name":"is_a","term_name":"regulation of translational initiation in response to starvation","termid":"GO:0071262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of translational initiation in response to starvation","synonyms":[{"name":"activation of translation initiation in response to starvation","type":"narrow"},{"name":"positive regulation of translational initiation in response to nutrient starvation","type":"exact"},{"name":"stimulation of translation initiation in response to starvation","type":"narrow"},{"name":"up regulation of translation initiation in response to starvation","type":"exact"},{"name":"up-regulation of translation initiation in response to starvation","type":"exact"},{"name":"upregulation of translation initiation in response to starvation","type":"exact"}],"termid":"GO:0071264"}


id: FYPO:0002233
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which all cells in the population are viable but longer than normal in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete viable elongated vegetative cell population (obsolete FYPO:0002233)","synonyms":[{"name":"population of viable long cells","type":"exact"},{"name":"viable long vegetative cell population","type":"exact"},{"name":"viable population of elongated vegetative cells","type":"exact"}],"termid":"FYPO:0002233"}


id: PBO:0004296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial peptidyl-tRNA hydrolase Pth1 (predicted)","termid":"PBO:0004296"}


id: SO:0001958
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of intron whereby the excision is driven by lariat formation.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intron","termid":"SO:0000188"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lariat_intron","synonyms":[{"name":"lariat intron","type":"exact"}],"termid":"SO:0001958"}


id: PBO:0042265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperonin containing TCP1 subunit 6B","termid":"PBO:0042265"}


id: GO:0002032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that inhibits the signaling function of a G protein-coupled receptor by uncoupling the receptor from its downstream G proteins.","definition_xrefs":["GOC:tb","GOC:dph","PMID:8396717"],"direct_ancestors":[{"relation_name":"is_a","term_name":"desensitization of G protein-coupled receptor signaling pathway","termid":"GO:0002029"},{"relation_name":"is_a","term_name":"negative regulation of protein binding","termid":"GO:0032091"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"desensitization of G protein-coupled receptor signaling pathway by arrestin","synonyms":[{"name":"arrestin mediated desensitisation of G-protein coupled receptor protein signalling pathway","type":"exact"},{"name":"arrestin mediated desensitization of G-protein coupled receptor protein signaling pathway","type":"exact"},{"name":"arrestin-mediated desensitization of G-protein coupled receptor protein signaling pathway","type":"exact"},{"name":"desensitization of G-protein coupled receptor protein signaling pathway by arrestin","type":"exact"}],"termid":"GO:0002032"}


id: SO:0002087
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non functional descendant of the coding portion of a coding transcript, part of a pseudogene.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pseudogenic_region","termid":"SO:0000462"},{"relation_name":"part_of","term_name":"pseudogenic_transcript","termid":"SO:0000516"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogenic_CDS","synonyms":[{"name":"INSDC_feature:CDS","type":"broad"},{"name":"INSDC_qualifier:pseudo","type":"exact"},{"name":"pseudogenic CDS","type":"exact"}],"termid":"SO:0002087"}


id: PBO:0056712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MEMO1 pseudogene 4","termid":"PBO:0056712"}


id: FYPO:0008111
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which snRNA modification is abnormal. All snRNA modification may be abnormal, or one or more specific snRNA modifications may be selectively affected.","definition_xrefs":["PMID:37403782"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal RNA modification","termid":"FYPO:0000370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000294","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal snRNA modification","termid":"FYPO:0008111"}


id: GO:0043650
data:
  {"annotated_genes":["SJAG_00106","SJAG_00714","SJAG_02225","SJAG_00529","SJAG_04145","SJAG_00815","SJAG_02408","SJAG_03306","SJAG_04054","SJAG_03266","SJAG_01126","SJAG_03275","SJAG_04156"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104475,108540],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009257"},{"annotations":[84044,107942],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006532"},{"annotations":[67467],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006761"},{"annotations":[100911,109807,101059,86471,102203,108541,104476],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046656"},{"annotations":[97655,107361,113817],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097054"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of dicarboxylic acids, any organic acid containing two carboxyl (-COOH) groups.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid metabolic process","termid":"GO:0043648"},{"relation_name":"is_a","term_name":"carboxylic acid biosynthetic process","termid":"GO:0046394"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00106":null,"SJAG_00529":null,"SJAG_00714":null,"SJAG_00815":null,"SJAG_01126":null,"SJAG_02225":null,"SJAG_02408":null,"SJAG_03266":null,"SJAG_03275":null,"SJAG_03306":null,"SJAG_04054":null,"SJAG_04145":null,"SJAG_04156":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"dicarboxylic acid biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"dicarboxylate biosynthesis","type":"exact"},{"name":"dicarboxylate biosynthetic process","type":"exact"},{"name":"dicarboxylic acid anabolism","type":"exact"},{"name":"dicarboxylic acid biosynthesis","type":"exact"},{"name":"dicarboxylic acid formation","type":"exact"},{"name":"dicarboxylic acid synthesis","type":"exact"}],"termid":"GO:0043650","terms_by_termid":{"GO:0006532":null,"GO:0006761":null,"GO:0009257":null,"GO:0046656":null,"GO:0097054":null}}


id: PBO:0044518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dishevelled associated activator of morphogenesis 2","termid":"PBO:0044518"}


id: PBO:0034549
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_phosphorylation_during_cellular_response_to_arsenite_ion","termid":"PBO:0034549"}


id: PBO:0016532
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae YHR072W","termid":"PBO:0016532"}


id: PBO:0026985
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_spatial_extent_of_centromeric_heterochromatin_assembly","termid":"PBO:0026985"}


id: GO:0015747
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of urate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"urate transport","synonyms":[{"name":"urate transmembrane transport","type":"exact"},{"name":"uric acid transport","type":"exact"}],"termid":"GO:0015747"}


id: PBO:0047406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 44","termid":"PBO:0047406"}


id: GO:0070782
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A phospholipid scrambling process that results in the appearance of phosphatidylserine on the outer leaflet of the plasma membrane of an apoptotic cell, which acts as an 'eat-me' signal for engulfing cells. Phosphatidylserine is exposed on the apoptotic cell surface by a phospholipid scramblase activity.","definition_xrefs":["GOC:mtg_apoptosis","GOC:rk","GOC:mah","PMID:11536005"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane phospholipid scrambling","termid":"GO:0017121"},{"relation_name":"part_of","term_name":"execution phase of apoptosis","termid":"GO:0097194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0061024","GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"phosphatidylserine exposure on apoptotic cell surface","synonyms":[{"name":"externalization of phosphatidylserine","type":"exact"}],"termid":"GO:0070782"}


id: PBO:0056880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MICOS10-NBL1 readthrough","termid":"PBO:0056880"}


id: PBO:0028647
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sister_chromatid_separation_during_meiosis_I","termid":"PBO:0028647"}


id: GO:0001518
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A sodium channel in a cell membrane whose opening is governed by the membrane potential.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sodium channel complex","termid":"GO:0034706"},{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"voltage-gated sodium channel complex","secondary_identifiers":["NIF_Subcellular:sao785001660"],"synonyms":[{"name":"voltage gated sodium channel complex","type":"exact"},{"name":"voltage-dependent sodium channel complex","type":"exact"},{"name":"voltage-sensitive sodium channel complex","type":"exact"}],"termid":"GO:0001518"}


id: PBO:0024825
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by Arabidopsis thaliana AtSGP1","termid":"PBO:0024825"}


id: PBO:0004682
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae Spt4","termid":"PBO:0004682"}


id: PBO:0017759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxidoreductase involved in NADPH regeneration (predicted)","termid":"PBO:0017759"}


id: PBO:0075301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"suppressor of cytokine signaling 2","termid":"PBO:0075301"}


id: PBO:0012548
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BYpass of Ras","termid":"PBO:0012548"}


id: GO:1900216
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of apoptotic process involved in metanephric collecting duct development.","definition_xrefs":["GOC:yaf","GOC:mtg_kidney_jan10","GOC:TermGenie","PMID:17314325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic process involved in metanephric collecting duct development","termid":"GO:1900214"},{"relation_name":"is_a","term_name":"positive regulation of apoptotic process involved in development","termid":"GO:1904747"},{"relation_name":"positively_regulates","term_name":"apoptotic process involved in metanephric collecting duct development","termid":"GO:1900204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of apoptotic process involved in metanephric collecting duct development","synonyms":[{"name":"activation of apoptosis of metanephric collecting duct development","type":"narrow"},{"name":"activation of apoptotic cell death of metanephric collecting duct development","type":"exact"},{"name":"activation of apoptotic process involved in metanephric collecting duct development","type":"narrow"},{"name":"activation of apoptotic process of metanephric collecting duct development","type":"exact"},{"name":"activation of apoptotic program of metanephric collecting duct development","type":"narrow"},{"name":"activation of apoptotic programmed cell death of metanephric collecting duct development","type":"exact"},{"name":"activation of programmed cell death by apoptosis of metanephric collecting duct development","type":"exact"},{"name":"activation of signaling (initiator) caspase activity of metanephric collecting duct development","type":"related"},{"name":"activation of type I programmed cell death of metanephric collecting duct development","type":"narrow"},{"name":"positive regulation of apoptosis of metanephric collecting duct development","type":"narrow"},{"name":"positive regulation of apoptotic cell death of metanephric collecting duct development","type":"exact"},{"name":"positive regulation of apoptotic process of metanephric collecting duct development","type":"exact"},{"name":"positive regulation of apoptotic program of metanephric collecting duct development","type":"narrow"},{"name":"positive regulation of apoptotic programmed cell death of metanephric collecting duct development","type":"exact"},{"name":"positive regulation of programmed cell death by apoptosis of metanephric collecting duct development","type":"exact"},{"name":"positive regulation of signaling (initiator) caspase activity of metanephric collecting duct development","type":"related"},{"name":"positive regulation of type I programmed cell death of metanephric collecting duct development","type":"narrow"},{"name":"up regulation of apoptosis of metanephric collecting duct development","type":"narrow"},{"name":"up regulation of apoptotic cell death of metanephric collecting duct development","type":"exact"},{"name":"up regulation of apoptotic process involved in metanephric collecting duct development","type":"exact"},{"name":"up regulation of apoptotic process of metanephric collecting duct development","type":"exact"},{"name":"up regulation of apoptotic program of metanephric collecting duct development","type":"narrow"},{"name":"up regulation of apoptotic programmed cell death of metanephric collecting duct development","type":"exact"},{"name":"up regulation of programmed cell death by apoptosis of metanephric collecting duct development","type":"exact"},{"name":"up regulation of signaling (initiator) caspase activity of metanephric collecting duct development","type":"related"},{"name":"up regulation of type I programmed cell death of metanephric collecting duct development","type":"narrow"},{"name":"up-regulation of apoptosis of metanephric collecting duct development","type":"narrow"},{"name":"up-regulation of apoptotic cell death of metanephric collecting duct development","type":"exact"},{"name":"up-regulation of apoptotic process involved in metanephric collecting duct development","type":"exact"},{"name":"up-regulation of apoptotic process of metanephric collecting duct development","type":"exact"},{"name":"up-regulation of apoptotic program of metanephric collecting duct development","type":"narrow"},{"name":"up-regulation of apoptotic programmed cell death of metanephric collecting duct development","type":"exact"},{"name":"up-regulation of programmed cell death by apoptosis of metanephric collecting duct development","type":"exact"},{"name":"up-regulation of signaling (initiator) caspase activity of metanephric collecting duct development","type":"related"},{"name":"up-regulation of type I programmed cell death of metanephric collecting duct development","type":"narrow"},{"name":"upregulation of apoptosis of metanephric collecting duct development","type":"narrow"},{"name":"upregulation of apoptotic cell death of metanephric collecting duct development","type":"exact"},{"name":"upregulation of apoptotic process involved in metanephric collecting duct development","type":"exact"},{"name":"upregulation of apoptotic process of metanephric collecting duct development","type":"exact"},{"name":"upregulation of apoptotic program of metanephric collecting duct development","type":"narrow"},{"name":"upregulation of apoptotic programmed cell death of metanephric collecting duct development","type":"exact"},{"name":"upregulation of programmed cell death by apoptosis of metanephric collecting duct development","type":"exact"},{"name":"upregulation of signaling (initiator) caspase activity of metanephric collecting duct development","type":"related"},{"name":"upregulation of type I programmed cell death of metanephric collecting duct development","type":"narrow"}],"termid":"GO:1900216"}


id: PBO:0072152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 29","termid":"PBO:0072152"}


id: FYPO:0001332
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A gene expression phenotype in which regulation of translation in response to stress is abnormal in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of translation in response to stress","termid":"FYPO:0000263"},{"relation_name":"is_a","term_name":"abnormal cellular response to stress during vegetative growth","termid":"FYPO:0001341"},{"relation_name":"is_a","term_name":"translation regulation phenotype during vegetative growth","termid":"FYPO:0005044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000298","FYPO:0001320","FYPO:0006551"],"is_obsolete":false,"name":"abnormal regulation of translation in response to stress during vegetative growth","synonyms":[{"name":"abnormal regulation of translation in response to stress during mitotic cell cycle","type":"related"},{"name":"protein synthesis after stress, defective during vegetative growth","type":"related"}],"termid":"FYPO:0001332"}


id: GO:0008142
data:
  {"annotated_genes":["SJAG_02323","SJAG_02375","SJAG_00355","SJAG_03718","SJAG_01722","SJAG_01590"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90384,98738,104340,105502,107455,112340],"is_not":false,"summary":null,"term":"GO:0008142"}]},"cv_name":"molecular_function","definition":"Binding to oxysterol, an oxidized form of cholesterol.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sterol binding","termid":"GO:0032934"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00355":null,"SJAG_01590":null,"SJAG_01722":null,"SJAG_02323":null,"SJAG_02375":null,"SJAG_03718":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0008289","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"oxysterol binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0008142","terms_by_termid":{"GO:0008142":null}}


id: PBO:0074041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC25A24 pseudogene 2","termid":"PBO:0074041"}


id: PATO:0000776
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000776 memory value (obsolete PATO:0000776)","termid":"PATO:0000776"}


id: PBO:0065430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, ATPase 1 pseudogene 3","termid":"PBO:0065430"}


id: GO:0044304
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The main axonal trunk, as opposed to the collaterals; i.e., excluding collaterals, terminal, spines, or dendrites.","definition_xrefs":["NIF_Subcellular:sao1596975044"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"axon","termid":"GO:0030424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"main axon","synonyms":[{"name":"axon shaft","type":"related"},{"name":"axon trunk","type":"exact"},{"name":"axonal shaft","type":"related"}],"termid":"GO:0044304"}


id: GO:0170040
data:
  {"annotated_genes":["SJAG_00830","SJAG_03861","SJAG_02235","SJAG_00493","SJAG_04145","SJAG_00495","SJAG_04634","SJAG_03293","SJAG_00714","SJAG_00937","SJAG_03641","SJAG_02450","SJAG_01903","SJAG_00881","SJAG_01271","SJAG_01019","SJAG_03163","SJAG_00674","SJAG_02309","SJAG_03398","SJAG_03434","SJAG_03290","SJAG_02901"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102898],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019544"},{"annotations":[93489,109333],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019547"},{"annotations":[109334,102899,93490],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010121"},{"annotations":[102110],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006530"},{"annotations":[107943],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006533"},{"annotations":[114457,78541],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006538"},{"annotations":[87847,83639,84615],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006540"},{"annotations":[97314],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006543"},{"annotations":[94002],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006546"},{"annotations":[83623,109157,84861,92543],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019464"},{"annotations":[107360],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042853"},{"annotations":[108196],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033512"},{"annotations":[99909],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006565"},{"annotations":[88906],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006562"},{"annotations":[114082,103247],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010133"},{"annotations":[90340,99910],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006567"},{"annotations":[102904],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006572"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of any amino acid that is incorporated into protein naturally by ribosomal translation of mRNA, and that has a specific codon for translation from mRNA to protein.","definition_xrefs":["GOC:ew"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid catabolic process","termid":"GO:0046395"},{"relation_name":"is_a","term_name":"proteinogenic amino acid metabolic process","termid":"GO:0170039"},{"relation_name":"is_a","term_name":"organonitrogen compound catabolic process","termid":"GO:1901565"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00493":null,"SJAG_00495":null,"SJAG_00674":null,"SJAG_00714":null,"SJAG_00830":null,"SJAG_00881":null,"SJAG_00937":null,"SJAG_01019":null,"SJAG_01271":null,"SJAG_01903":null,"SJAG_02235":null,"SJAG_02309":null,"SJAG_02450":null,"SJAG_02901":null,"SJAG_03163":null,"SJAG_03290":null,"SJAG_03293":null,"SJAG_03398":null,"SJAG_03434":null,"SJAG_03641":null,"SJAG_03861":null,"SJAG_04145":null,"SJAG_04634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0044281","GO:0044248"],"is_obsolete":false,"name":"proteinogenic amino acid catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"proteinogenic amino acid breakdown","type":"exact"},{"name":"proteinogenic amino acid catabolism","type":"exact"},{"name":"proteinogenic amino acid degradation","type":"exact"}],"termid":"GO:0170040","terms_by_termid":{"GO:0006530":null,"GO:0006533":null,"GO:0006538":null,"GO:0006540":null,"GO:0006543":null,"GO:0006546":null,"GO:0006562":null,"GO:0006565":null,"GO:0006567":null,"GO:0006572":null,"GO:0010121":null,"GO:0010133":null,"GO:0019464":null,"GO:0019544":null,"GO:0019547":null,"GO:0033512":null,"GO:0042853":null}}


id: PBO:0108710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RabGAP Gyp2","termid":"PBO:0108710"}


id: GO:0002481
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class Ib protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class Ib molecule. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family.","definition_xrefs":["PMID:15928678","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of exogenous peptide antigen via MHC class Ib","termid":"GO:0002477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent","synonyms":[{"name":"TAP-dependent antigen processing and presentation of exogenous peptide antigen via MHC class Ib","type":"exact"},{"name":"TAP-dependent exogenous peptide antigen processing and presentation via MHC class Ib","type":"exact"},{"name":"exogenous peptide antigen processing and presentation via MHC class Ib, TAP-dependent","type":"exact"}],"termid":"GO:0002481"}


id: PBO:0067019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 32, pseudogene","termid":"PBO:0067019"}


id: PBO:0053951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1256","termid":"PBO:0053951"}


id: PBO:0003393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eIF3e subunit Int6","termid":"PBO:0003393"}


id: PR:Q9UT93
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A NEDD8-activating enzyme E1 regulatory subunit that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10953:SF29","OMA:SCHPO01625","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEDD8-activating enzyme E1 regulatory subunit (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC323.06c","secondary_identifiers":["UniProtKB:Q9UT93"],"synonyms":[{"name":"Spom972h-NAE1","type":"exact"},{"name":"ubiquitin-activating enzyme E1-like 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin-like activation protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UT93"}


id: PBO:0015229
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complement S. cerevisiae CET1 when coexpressed with pombe ceg1","termid":"PBO:0015229"}


id: PBO:0063525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDZ domain containing 4","termid":"PBO:0063525"}


id: PBO:0063873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class C pseudogene 2","termid":"PBO:0063873"}


id: GO:0102507
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cyanidin 3-O-beta-D-glucoside betaine + 1-O-4-hydroxybenzoyl-beta-D-glucose = cyanidin 3,7-di-O-beta-D-glucoside betaine + 4-hydroxybenzoic acid + H+.","definition_xrefs":["GOC:pz","EC:2.4.1.300"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"cyanidin 3-O-glucoside 7-O-glucosyltransferase (hydroxybenzoly-glucose dependent) activity","secondary_identifiers":["MetaCyc:RXN-14434"],"termid":"GO:0102507"}


id: PBO:0075794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine and arginine rich splicing factor 12","termid":"PBO:0075794"}


id: PBO:0072651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retrotransposon Gag like 4","termid":"PBO:0072651"}


id: FYPO:0000164
data:
  {"alleles_by_uniquename":{"SJAG_02252:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02252","name":"ace2delta","uniquename":"SJAG_02252:allele-1"},"SJAG_03143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03143","name":"sep1delta","uniquename":"SJAG_03143:allele-1"},"SJAG_03444:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03444","name":"agn1delta","uniquename":"SJAG_03444:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115183],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001971"},{"annotations":[115263,115262],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0006557"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell separation after cytokinesis is abnormal. Cell separation is the process of physically separating progeny cells after cytokinesis is complete, and involves enzymatic digestion of septum components.","definition_xrefs":["PomBase:mah","GO:0000920"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell division","termid":"FYPO:0000186"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02252":null,"SJAG_03143":null,"SJAG_03444":null},"genotype_count":3,"genotypes_by_uniquename":{"ace2delta":{"display_name":"ace2delta","display_uniquename":"ace2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02252:allele-1","expression":"Null"}]}]},"agn1delta":{"display_name":"agn1delta","display_uniquename":"agn1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03444:allele-1","expression":"Null"}]}]},"sep1delta":{"display_name":"sep1delta","display_uniquename":"sep1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03143:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal cell separation after cytokinesis","references_by_uniquename":{"PMID:22300943":null,"PMID:24699070":null},"single_locus_annotated_genes":["SJAG_03143","SJAG_03444","SJAG_02252"],"single_locus_genotype_uniquenames":["sep1delta","ace2delta","agn1delta"],"synonyms":[{"name":"abnormal cell separation after cytokinesis during mitotic cell cycle","type":"related"},{"name":"abnormal cell separation after cytokinesis during vegetative growth","type":"exact"},{"name":"abnormal mitotic cytokinetic cell separation","type":"exact"},{"name":"abnormal septum digestion after cytokinesis","type":"exact"}],"termid":"FYPO:0000164","terms_by_termid":{"FYECO:0000137":null,"FYPO:0001971":null,"FYPO:0006557":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: GO:0030031
data:
  {"annotated_genes":["SJAG_02864","SJAG_00514","SJAG_01794","SJAG_02989","SJAG_02379","SJAG_03453","SJAG_04509","SJAG_02700","SJAG_01993","SJAG_01894","SJAG_01943"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95106,88656,94427,95027,110441,84453],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1904600"},{"annotations":[89620,84093,107490,86039,87008],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1902917"}]},"cv_name":"biological_process","definition":"Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon.","definition_xrefs":["GOC:jl","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"is_a","term_name":"cell projection organization","termid":"GO:0030030"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00514":null,"SJAG_01794":null,"SJAG_01894":null,"SJAG_01943":null,"SJAG_01993":null,"SJAG_02379":null,"SJAG_02700":null,"SJAG_02864":null,"SJAG_02989":null,"SJAG_03453":null,"SJAG_04509":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"cell projection assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cell projection biogenesis","type":"related"},{"name":"formation of a cell surface projection","type":"exact"}],"termid":"GO:0030031","terms_by_termid":{"GO:1902917":null,"GO:1904600":null}}


id: PBO:0062830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OSMR divergent transcript","termid":"PBO:0062830"}


id: GO:0080147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a root hair cell over time, from its formation to the mature state.","definition_xrefs":["PMID:19675148"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell development","termid":"GO:0048468"},{"relation_name":"part_of","term_name":"root hair cell differentiation","termid":"GO:0048765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"root hair cell development","termid":"GO:0080147"}


id: MOD:01175
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively results from forming an adduct between a cysteine residue and the tetrapyrrole compound phycourobilin.","definition_xrefs":["PubMed:3208761","PubMed:1903388","PubMed:3838747","RESID:AA0427"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tetrapyrrole modified residue","termid":"MOD:00700"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-phycourobilin-L-cysteine","synonyms":[{"name":"(2S,3R,16R)-18-ethenyl-3-[(1R)-1-([(R)-2-amino-2-carboxyethyl]sulfanyl)ethyl]-8,12-bis(2-carboxyethyl)-2,7,13,17-tetramethyl-4,5,15,16-tetrahydrobiline-1,19(21H,22H,24H)-dione","type":"exact"},{"name":"18-ethenyl-3-[1-(2-amino-2-carboxyethylsulfanyl)ethyl]-2,3,15,16-dihydro-2,7,13,17-tetramethyl-1,19-dioxo-(21H,22H,24H)-bilin-8,12-dipropanoic acid","type":"exact"},{"name":"BINDING Phycourobilin chromophore (covalent; via 1 link)","type":"exact"},{"name":"PUB","type":"exact"},{"name":"PUBCys","type":"exact"},{"name":"S-phycourobilin-L-cysteine","type":"exact"},{"name":"phycourobilin cysteine adduct","type":"exact"}],"termid":"MOD:01175"}


id: PBO:0064263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology domain containing B2","termid":"PBO:0064263"}


id: GO:0070413
data:
  {"annotated_genes":["SJAG_01862","SJAG_00182","SJAG_01531","SJAG_01427","SJAG_04859","SJAG_00129","SJAG_01646"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73410,87995,89482,92664,93285,97183,107638],"is_not":false,"summary":null,"term":"GO:0070413"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving trehalose that occur as a result of a stimulus indicating the organism is under stress.","definition_xrefs":["PMID:9797333","GOC:jp","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trehalose metabolic process","termid":"GO:0005991"},{"relation_name":"part_of","term_name":"cellular response to stress","termid":"GO:0033554"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00129":null,"SJAG_00182":null,"SJAG_01427":null,"SJAG_01531":null,"SJAG_01646":null,"SJAG_01862":null,"SJAG_04859":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"trehalose metabolism in response to stress","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"trehalose metabolic process involved in response to stress","type":"exact"}],"termid":"GO:0070413","terms_by_termid":{"GO:0070413":null}}


id: PBO:0091348
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human DBR1","termid":"PBO:0091348"}


id: GO:0035945
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The set of processes involved in identifying and degrading defective or aberrant non-coding RNA transcripts (ncRNAs) within the mitochondrion.","definition_xrefs":["GOC:ans","PMID:19864255"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial RNA surveillance","termid":"GO:2000827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mitochondrial ncRNA surveillance","synonyms":[{"name":"mitochondrial aberrant ncRNA catabolic process","type":"exact"},{"name":"mitochondrial ncRNA quality control","type":"exact"},{"name":"mitochondrial non-coding RNA surveillance","type":"exact"}],"termid":"GO:0035945"}


id: GO:0019461
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glutamine into fumarate, beginning with the conversion of glutamine to glutamate catalyzed by the enzyme glutamate synthase (NADPH) (EC:1.4.1.13).","definition_xrefs":["GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamine catabolic process to fumarate","termid":"GO:0019460"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"glutamine catabolic process to fumarate, using glutamate synthase (NADPH)","secondary_identifiers":["MetaCyc:GLUTAMINEFUM-PWY"],"synonyms":[{"name":"glutamate catabolic process to fumarate, using glutamate synthase (NADPH)","type":"related"},{"name":"glutamine breakdown to fumarate, using glutamate synthase (NADPH)","type":"exact"},{"name":"glutamine degradation to fumarate, using glutamate synthase (NADPH)","type":"exact"}],"termid":"GO:0019461"}


id: GO:0045855
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of a process in which oskar mRNA is transported to, or maintained in, the oocyte pole plasm.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pole plasm oskar mRNA localization","termid":"GO:0007317"},{"relation_name":"is_a","term_name":"negative regulation of intracellular mRNA localization","termid":"GO:1904581"},{"relation_name":"negatively_regulates","term_name":"pole plasm oskar mRNA localization","termid":"GO:0045451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of pole plasm oskar mRNA localization","synonyms":[{"name":"down regulation of pole plasm oskar mRNA localization","type":"exact"},{"name":"down-regulation of pole plasm oskar mRNA localization","type":"exact"},{"name":"downregulation of pole plasm oskar mRNA localization","type":"exact"},{"name":"inhibition of pole plasm oskar mRNA localization","type":"narrow"},{"name":"negative regulation of oocyte pole plasm oskar mRNA localization","type":"exact"},{"name":"negative regulation of pole plasm oskar mRNA localisation","type":"exact"}],"termid":"GO:0045855"}


id: PR:G2TRM8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- coa2 gene.","definition_xrefs":["UniProtKB:G2TRM8","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly factor 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC15A10.17","synonyms":[{"name":"Spom972h-coa2","type":"exact"}],"termid":"PR:G2TRM8"}


id: PBO:0029050
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_degradation_during_nitrogen_starvation","termid":"PBO:0029050"}


id: GO:0033652
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A chlorophyll-containing plastid as found within host cells with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell plastid","termid":"GO:0033651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell chloroplast","termid":"GO:0033652"}


id: PBO:0047260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 242 member C","termid":"PBO:0047260"}


id: GO:0018001
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acetylation of the N-terminal tyrosine of proteins to form the derivative N-acetyl-L-valine.","definition_xrefs":["RESID:AA0054"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal protein amino acid acetylation","termid":"GO:0006474"},{"relation_name":"is_a","term_name":"peptidyl-valine modification","termid":"GO:0018213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0051604"],"is_obsolete":false,"name":"N-terminal peptidyl-valine acetylation","termid":"GO:0018001"}


id: PBO:0089969
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"activating signal cointegrator 1 complex subunit, human ASCC1 ortholog","termid":"PBO:0089969"}


id: GO:0015368
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id: GO:0140853
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id: PBO:0089769
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id: PBO:0045565
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 13","termid":"PBO:0045565"}


id: PBO:0085921
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; member of the seripauperin multigene family encoded mainly in subtelomeric regions; identical to Pau6p","termid":"PBO:0085921"}


id: GO:0001669
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id: PBO:0043035
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"charged multivesicular body protein 5","termid":"PBO:0043035"}


id: PBO:0043580
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type XII alpha 1 chain","termid":"PBO:0043580"}


id: GO:0009189
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id: PBO:0059313
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id: GO:0031695
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id: PBO:0086389
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id: GO:0048193
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id: PBO:0074640
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id: PBO:0042283
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id: PBO:0050492
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id: GO:0048298
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of isotype switching to IgA isotypes.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of isotype switching","termid":"GO:0045830"},{"relation_name":"is_a","term_name":"regulation of isotype switching to IgA isotypes","termid":"GO:0048296"},{"relation_name":"positively_regulates","term_name":"isotype switching to IgA isotypes","termid":"GO:0048290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0006310"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0006310"},{"rel_name":"positively_regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0010467","GO:0006259","GO:0008150","GO:0006310"],"is_obsolete":false,"name":"positive regulation of isotype switching to IgA isotypes","synonyms":[{"name":"activation of isotype switching to IgA isotypes","type":"narrow"},{"name":"positive regulation of class switch recombination to IgA isotypes","type":"exact"},{"name":"positive regulation of class switching to IgA isotypes","type":"exact"},{"name":"positive regulation of isotype switch recombination to IgA isotypes","type":"exact"},{"name":"stimulation of isotype switching to IgA isotypes","type":"narrow"},{"name":"up regulation of isotype switching to IgA isotypes","type":"exact"},{"name":"up-regulation of isotype switching to IgA isotypes","type":"exact"},{"name":"upregulation of isotype switching to IgA isotypes","type":"exact"}],"termid":"GO:0048298"}


id: GO:0052665
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing 2'-O-methyluracil.","definition_xrefs":["RHEA:43100","PMID:25626150"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA (uridine) methyltransferase activity","termid":"GO:0016300"},{"relation_name":"is_a","term_name":"tRNA 2'-O-methyltransferase activity","termid":"GO:0106050"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016741","GO:0140101","GO:0140098"],"is_obsolete":false,"name":"tRNA (uracil-2'-O-)-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN0-5143","Reactome:R-HSA-6788707"],"synonyms":[{"name":"tRNA (uracil 2')-methyltransferase activity","type":"related"},{"name":"tRNA uracil 2'-methyltransferase activity","type":"related"},{"name":"tRNA uracil-2'-O-methyltransferase activity","type":"related"}],"termid":"GO:0052665"}


id: PBO:0109381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 12","termid":"PBO:0109381"}


id: PBO:0066759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 57","termid":"PBO:0066759"}


id: FYPO:0002098
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal during a cellular response to hydroxyurea.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein phosphorylation during vegetative growth","termid":"FYPO:0001838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001320","FYPO:0000002","FYPO:0002274","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein phosphorylation during cellular response to hydroxyurea","synonyms":[{"name":"decreased protein phosphorylation during cellular response to HU","type":"exact"},{"name":"decreased protein phosphorylation during cellular response to hydroxyurea during mitotic cell cycle","type":"related"},{"name":"decreased protein phosphorylation during cellular response to hydroxyurea during vegetative growth","type":"exact"},{"name":"reduced protein phosphorylation during cellular response to HU","type":"exact"},{"name":"reduced protein phosphorylation during cellular response to hydroxyurea","type":"exact"}],"termid":"FYPO:0002098"}


id: PBO:0081410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 260","termid":"PBO:0081410"}


id: MOD:00659
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamine residue to a methylated glutamine, either 2-methylated glutamine, N5-methylated glutamine, or methyl esterified deamidated glutamine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"},{"relation_name":"is_a","term_name":"modified L-glutamine residue","termid":"MOD:00907"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"methylated glutamine","synonyms":[{"name":"MeGln","type":"exact"}],"termid":"MOD:00659"}


id: GO:1901620
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of smoothened signaling pathway involved in dorsal/ventral neural tube patterning.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of smoothened signaling pathway","termid":"GO:0008589"},{"relation_name":"regulates","term_name":"smoothened signaling pathway involved in dorsal/ventral neural tube patterning","termid":"GO:0060831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","synonyms":[{"name":"regulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"regulation of hh signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"regulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning","type":"exact"}],"termid":"GO:1901620"}


id: PBO:0053189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leptin receptor overlapping transcript","termid":"PBO:0053189"}


id: GO:0006060
data:
  {"annotated_genes":["SJAG_00237"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101166],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006062"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving sorbitol (D-glucitol), one of the ten stereoisomeric hexitols. It can be derived from glucose by reduction of the aldehyde group.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexitol metabolic process","termid":"GO:0006059"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00237":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"sorbitol metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:P461-PWY"],"synonyms":[{"name":"sorbitol metabolism","type":"exact"}],"termid":"GO:0006060","terms_by_termid":{"GO:0006062":null}}


id: GO:0009211
data:
  {"annotated_genes":["SJAG_04627","SJAG_04657","SJAG_04665","SJAG_04487","SJAG_00885"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85553,88583,114099],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006235"},{"annotations":[95117],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046081"},{"annotations":[103393],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009212"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving pyrimidine deoxyribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with triphosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleoside triphosphate metabolic process","termid":"GO:0009147"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00885":null,"SJAG_04487":null,"SJAG_04627":null,"SJAG_04657":null,"SJAG_04665":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"pyrimidine deoxyribonucleoside triphosphate metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pyrimidine deoxyribonucleoside triphosphate metabolism","type":"exact"}],"termid":"GO:0009211","terms_by_termid":{"GO:0006235":null,"GO:0009212":null,"GO:0046081":null}}


id: PBO:0089080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal lysine methyltransferase, human SETD6 ortholog","termid":"PBO:0089080"}


id: PBO:0055684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lipase family member N","termid":"PBO:0055684"}


id: PBO:0042259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperonin containing TCP1 subunit 4 pseudogene 1","termid":"PBO:0042259"}


id: GO:0031028
data:
  {"annotated_genes":["SJAG_01386","SJAG_04776","SJAG_02169","SJAG_00883","SJAG_03681","SJAG_01188","SJAG_00082","SJAG_03342","SJAG_01464","SJAG_00229","SJAG_03508","SJAG_00526","SJAG_04943","SJAG_02232","SJAG_04455","SJAG_06270","SJAG_03353","SJAG_03936","SJAG_04597","SJAG_04468","SJAG_01790","SJAG_02514","SJAG_01805","SJAG_03048","SJAG_03376","SJAG_03592"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83735,85418,90553,97068,102505,103224,103270,111578],"is_not":false,"summary":null,"term":"GO:0031028"},{"annotations":[89601,97398,95711,103363,91784,112016,101155,89062,103674,95792,88981,106306,86891,87873],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0031030"},{"annotations":[106657,86174,98516,83733,89951],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0031031"}]},"cv_name":"biological_process","definition":"The series of molecular signals, mediated by the small GTPase Ras, that results in the initiation of contraction of the contractile ring, at the beginning of cytokinesis and cell division by septum formation. The pathway coordinates chromosome segregation with mitotic exit and cytokinesis.","definition_xrefs":["GOC:mah","PMID:16775007","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small GTPase-mediated signal transduction","termid":"GO:0007264"}],"gene_count":26,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00229":null,"SJAG_00526":null,"SJAG_00883":null,"SJAG_01188":null,"SJAG_01386":null,"SJAG_01464":null,"SJAG_01790":null,"SJAG_01805":null,"SJAG_02169":null,"SJAG_02232":null,"SJAG_02514":null,"SJAG_03048":null,"SJAG_03342":null,"SJAG_03353":null,"SJAG_03376":null,"SJAG_03508":null,"SJAG_03592":null,"SJAG_03681":null,"SJAG_03936":null,"SJAG_04455":null,"SJAG_04468":null,"SJAG_04597":null,"SJAG_04776":null,"SJAG_04943":null,"SJAG_06270":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"septation initiation signaling","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"SIN","type":"exact"},{"name":"septation initiation network","type":"exact"},{"name":"septation initiation signaling cascade","type":"related"},{"name":"septation initiation signalling","type":"exact"}],"termid":"GO:0031028","terms_by_termid":{"GO:0031028":null,"GO:0031030":null,"GO:0031031":null}}


id: GO:0070282
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to pyridoxine, 4,5-bis(hydroxymethyl)-2-methylpyridin-3-ol, a form of vitamin B6.","definition_xrefs":["CHEBI:16709","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin B6 binding","termid":"GO:0070279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"pyridoxine binding","termid":"GO:0070282"}


id: PBO:0068817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 55, pseudogene","termid":"PBO:0068817"}


id: GO:0035614
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a stem-loop in a small nuclear RNA (snRNA). An RNA stem-loop is a secondary RNA structure consisting of a double-stranded RNA (dsRNA) stem and a terminal loop.","definition_xrefs":["PMID:16568238","PMID:20455544","GOC:sart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snRNA binding","termid":"GO:0017069"},{"relation_name":"is_a","term_name":"RNA stem-loop binding","termid":"GO:0035613"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003723"],"is_obsolete":false,"name":"snRNA stem-loop binding","synonyms":[{"name":"snRNA hairpin loop binding","type":"exact"},{"name":"small nuclear RNA stem-loop binding","type":"exact"},{"name":"snRNA hairpin binding","type":"exact"}],"termid":"GO:0035614"}


id: PBO:0047744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibronectin type III domain containing 8","termid":"PBO:0047744"}


id: PBO:0085306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphatase subunit of the trehalose-6-P synthase/phosphatase complex; involved in the synthesis of storage carbohydrate trehalose; positive regulator of autophagy involved in the dephosphorylation of Rim15p leading to ATG8 induction; expression is induced by stress conditions and repressed by the Ras-cAMP pathway; protein abundance increases in response to DNA replication stress","termid":"PBO:0085306"}


id: PBO:0038889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adducin 2","termid":"PBO:0038889"}


id: PBO:0017847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human TMEM165 homolog, implicated in calcium transport","termid":"PBO:0017847"}


id: GO:0110139
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of imaginal disc-derived leg joint morphogenesis.","definition_xrefs":["GOC:ha","PMID:25329825"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of imaginal disc-derived leg joint morphogenesis","termid":"GO:0110137"},{"relation_name":"negatively_regulates","term_name":"imaginal disc-derived leg morphogenesis","termid":"GO:0007480"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of imaginal disc-derived leg joint morphogenesis","termid":"GO:0110139"}


id: FYPO:0004799
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the second meiotic nuclear division does not occur during a cycle of zygotic meiosis and sporulation. Zygotic meiosis and sporulation take place under conditions of continuous nitrogen starvation, in which haploid cells of the opposite mating types conjugate to form diploid zygotes that proceed immediately to undergo meiosis and sporulation.","definition_xrefs":["PMID:25891897","PomBase:mah","PMID:22558440"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished meiosis II","termid":"FYPO:0003379"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished zygotic meiosis II","synonyms":[{"name":"abolished meiosis II during zygotic meiosis","type":"exact"},{"name":"abolished zygotic second meiotic nuclear division","type":"exact"}],"termid":"FYPO:0004799"}


id: GO:0015439
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + H2O + heme(in) = ADP + phosphate + heme(out).","definition_xrefs":["RHEA:19261"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heme transmembrane transporter activity","termid":"GO:0015232"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"ABC-type heme transporter activity","secondary_identifiers":["EC:7.6.2.5","GO:0103115","Reactome:R-HSA-5683355","Reactome:R-HSA-1369065","Reactome:R-HSA-382560","Reactome:R-HSA-917979","MetaCyc:3.6.3.41-RXN"],"synonyms":[{"name":"ATP-dependent heme transmembrane transporter activity","type":"exact"},{"name":"ATPase-coupled heme transmembrane transporter activity","type":"related"},{"name":"ATPase-coupled heme transporter activity","type":"related"},{"name":"haem-transporting ATPase activity","type":"exact"},{"name":"heme ABC transporter","type":"narrow"},{"name":"heme-transporting ATPase activity","type":"exact"},{"name":"protoheme IX ABC transporter activity","type":"related"}],"termid":"GO:0015439"}


id: PBO:0000060
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"appears to be truncated","termid":"PBO:0000060"}


id: PBO:0072277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S23 pseudogene 6","termid":"PBO:0072277"}


id: PBO:0077370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM108 antisense RNA 1","termid":"PBO:0077370"}


id: GO:0004938
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of alpha2-adrenergic receptors; the activity involves transmitting the signal to the Gi alpha subunit of a heterotrimeric G protein.","definition_xrefs":["GOC:cb","IUPHAR_GPCR:1274","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-adrenergic receptor activity","termid":"GO:0004936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"alpha2-adrenergic receptor activity","synonyms":[{"name":"alpha2 adrenoceptor","type":"exact"}],"termid":"GO:0004938"}


id: SO:0002248
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of DNA that is predicted to be translated and transcribed into a protein by a protein detection algorithm that does not get transcribed in nature.","definition_xrefs":["PMID:21771858"],"direct_ancestors":[{"relation_name":"is_a","term_name":"experimental_feature","termid":"SO:0001410"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spurious_protein","synonyms":[{"name":"spurious protein","type":"exact"}],"termid":"SO:0002248"}


id: GO:0033910
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of (1->4)-alpha-D-glucosidic linkages in amylaceous polysaccharides, to remove successive maltotetraose residues from the non-reducing chain ends.","definition_xrefs":["EC:3.2.1.60"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787","GO:0016798"],"is_obsolete":false,"name":"glucan 1,4-alpha-maltotetraohydrolase activity","secondary_identifiers":["MetaCyc:3.2.1.60-RXN"],"synonyms":[{"name":"1,4-alpha-D-glucan maltotetraohydrolase activity","type":"related"},{"name":"G4-amylase activity","type":"related"},{"name":"exo-maltotetraohydrolase activity","type":"related"},{"name":"glucan 1,4-alpha-maltotetrahydrolase activity","type":"related"},{"name":"maltotetraose-forming amylase activity","type":"related"}],"termid":"GO:0033910"}


id: PBO:0081405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF252P antisense RNA 1","termid":"PBO:0081405"}


id: PBO:0069579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 853, pseudogene","termid":"PBO:0069579"}


id: PBO:0047736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FNDC1 antisense RNA 1","termid":"PBO:0047736"}


id: PBO:0065414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 20S subunit beta 3","termid":"PBO:0065414"}


id: GO:0052228
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism involving protein macromolecules within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete metabolism by symbiont of host protein (obsolete GO:0052228)","termid":"GO:0052228"}


id: PBO:0074788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 9","termid":"PBO:0074788"}


id: PBO:0000709
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human eif3h","termid":"PBO:0000709"}


id: PBO:0034076
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_non_functional_homology_relationship_with","termid":"PBO:0034076"}


id: FYPO:0000905
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the ubiquitination of one or more specific proteins, or of specific protein sites, is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein modification during vegetative growth","termid":"FYPO:0000329"},{"relation_name":"is_a","term_name":"abnormal protein ubiquitination","termid":"FYPO:0006977"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0002274","FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein ubiquitination during vegetative growth","synonyms":[{"name":"abnormal protein ubiquitination during mitotic cell cycle","type":"related"},{"name":"abnormal protein ubiquitinylation during vegetative growth","type":"related"},{"name":"abnormal protein ubiquitylation during vegetative growth","type":"exact"}],"termid":"FYPO:0000905"}


id: PBO:0081004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 41","termid":"PBO:0081004"}


id: PBO:0034491
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_number_of_Rad52_foci_during_cellular_response_to_bleomycin","termid":"PBO:0034491"}


id: PBO:0076330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SYS1 golgi trafficking protein","termid":"PBO:0076330"}


id: PR:Q09719
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-dependent RNA helicase DDX54 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR24031:SF17","PRO:DNx","OMA:SCHPO00156"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase dbp10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31A2.07c","secondary_identifiers":["UniProtKB:Q09719"],"synonyms":[{"name":"Spom972h-DDX54","type":"exact"}],"termid":"PR:Q09719"}


id: PATO:0001778
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A strength which is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"strength","termid":"PATO:0001230"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased strength","synonyms":[{"name":"high strength","type":"exact"}],"termid":"PATO:0001778"}


id: PBO:0049506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A clustered histone 13","termid":"PBO:0049506"}


id: PBO:0004140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mre11 complex subunit Nbs1","termid":"PBO:0004140"}


id: GO:0005166
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a neurotrophin p75 receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurotrophin receptor binding","termid":"GO:0005165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"neurotrophin p75 receptor binding","synonyms":[{"name":"neurotrophin p75 receptor ligand","type":"narrow"}],"termid":"GO:0005166"}


id: PBO:0072839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAP30 like","termid":"PBO:0072839"}


id: PBO:0086983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Regulatory subunit of trehalose-6-phosphate synthase/phosphatase; involved in synthesis of storage carbohydrate trehalose; expression is induced by stress conditions and repressed by the Ras-cAMP pathway; TPS3 has a paralog, TSL1, that arose from the whole genome duplication","termid":"PBO:0086983"}


id: GO:0002500
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The hydrolysis of a peptide bond or bonds within a protein by lysosomal resident proteases contributing to antigen processing and presentation.","definition_xrefs":["PMID:15771591","GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteolysis associated with antigen processing and presentation","termid":"GO:0002496"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"proteolysis within lysosome associated with antigen processing and presentation","synonyms":[{"name":"lysosomal proteolysis associated with antigen processing and presentation","type":"exact"}],"termid":"GO:0002500"}


id: GO:1904916
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of L-lysine from the lysosomal lumen across the lysosomal membrane and into the cytosol.","definition_xrefs":["GOC:kmv","GOC:TermGenie","PMID:22822152","GO_REF:0000078"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysosomal transport","termid":"GO:0007041"},{"relation_name":"is_a","term_name":"L-lysine transmembrane export from vacuole","termid":"GO:0089707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"transmembrane L-lysine transport from lysosomal lumen to cytosol","termid":"GO:1904916"}


id: PBO:0028197
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_hypothemycin","termid":"PBO:0028197"}


id: PBO:0074351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"structural maintenance of chromosomes 1A","termid":"PBO:0074351"}


id: PBO:0068611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 62, pseudogene","termid":"PBO:0068611"}


id: PBO:0060336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin VB pseudogene 1","termid":"PBO:0060336"}


id: GO:0009950
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The establishment, maintenance and elaboration of the dorsal/ventral axis. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.","definition_xrefs":["GOC:tb","GOC:dph","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axis specification","termid":"GO:0009798"},{"relation_name":"part_of","term_name":"dorsal/ventral pattern formation","termid":"GO:0009953"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dorsal/ventral axis specification","synonyms":[{"name":"dorsal-ventral axis specification","type":"exact"},{"name":"dorsal/ventral axis determination","type":"related"},{"name":"dorsoventral axis specification","type":"exact"}],"termid":"GO:0009950"}


id: PBO:0047504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fer-1 like family member 5","termid":"PBO:0047504"}


id: GO:0048279
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The joining of the lipid bilayer membrane around a vesicle to the lipid bilayer membrane around the endoplasmic reticulum.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle fusion","termid":"GO:0006906"},{"relation_name":"is_a","term_name":"endoplasmic reticulum organization","termid":"GO:0007029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0016192","GO:0061024","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"vesicle fusion with endoplasmic reticulum","synonyms":[{"name":"vesicle fusion with ER","type":"exact"}],"termid":"GO:0048279"}


id: PBO:0046139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 5A pseudogene 2","termid":"PBO:0046139"}


id: GO:1902717
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of sequestering of iron ion.","definition_xrefs":["GO_REF:0000058","PMID:3099306","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete sequestering of iron ion (obsolete GO:1902717)","synonyms":[{"name":"sequestering of iron ion","type":"exact"}],"termid":"GO:1902717"}


id: GO:0043534
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of an endothelial cell into the extracellular matrix in order to form new blood vessels during angiogenesis.","definition_xrefs":["PMID:11166264"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endothelial cell migration","termid":"GO:0043542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"blood vessel endothelial cell migration","termid":"GO:0043534"}


id: FYPO:0007392
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which that are aneuploid due to the presence of an extra copy of chromosome 3 lose the extra chromosome, producing haploid daughter cells, at a higher frequency than in otherwise wild-type cells.","definition_xrefs":["PomBase:jh","PMID:22737087","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vegetative cell phenotype","termid":"FYPO:0003755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased loss of disomic chromosome 3","synonyms":[{"name":"increased haploidisation in presence of chromosome 3 disomy","type":"related"},{"name":"increased loss of disomic chromosome 3 during mitotic cell cycle","type":"related"},{"name":"increased loss of disomic chromosome 3 during vegetative growth","type":"exact"}],"termid":"FYPO:0007392"}


id: PBO:0066776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 74","termid":"PBO:0066776"}


id: PBO:0052874
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 6-3","termid":"PBO:0052874"}


id: FYPO:0001479
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of alpha,alpha-trehalase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000661","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"abnormal alpha,alpha-trehalase activity","synonyms":[{"name":"abnormal neutral trehalase activity","type":"exact"},{"name":"abnormal trehalase activity","type":"broad"}],"termid":"FYPO:0001479"}


id: GO:0009918
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 5-dehydroepisterol = 24-methylenecholesterol.","definition_xrefs":["ISBN:0943088399"],"gene_count":0,"genotype_count":0,"name":"obsolete sterol delta7 reductase activity (obsolete GO:0009918)","synonyms":[{"name":"sterol delta-7 reductase activity","type":"exact"}],"termid":"GO:0009918"}


id: PBO:0068296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 2 pseudogene 1","termid":"PBO:0068296"}


id: PBO:0091361
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complented by human NRAS","termid":"PBO:0091361"}


id: GO:0009383
data:
  {"annotated_genes":["SJAG_02417","SJAG_03877"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91763,109747],"is_not":false,"summary":null,"term":"GO:0009383"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to cytosine to form 5-methylcytosine in small subunit ribosomal RNA.","definition_xrefs":["PMID:10026269","PMID:18786544","GOC:imk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C-methyltransferase activity","termid":"GO:0008169"},{"relation_name":"is_a","term_name":"rRNA (cytosine) methyltransferase activity","termid":"GO:0016434"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02417":null,"SJAG_03877":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0016741","GO:0003824","GO:0140098","GO:0003674"],"is_obsolete":false,"name":"rRNA (cytosine-C5-)-methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-6790944","Reactome:R-HSA-6793057"],"synonyms":[{"name":"rRNA (cytosine-C5-967)-methyltransferase activity","type":"narrow"},{"name":"rRNA m5C967 methyltransferase activity","type":"narrow"}],"termid":"GO:0009383","terms_by_termid":{"GO:0009383":null}}


id: GO:0019252
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"starch metabolic process","termid":"GO:0005982"},{"relation_name":"is_a","term_name":"glucan biosynthetic process","termid":"GO:0009250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"starch biosynthetic process","secondary_identifiers":["MetaCyc:PWY-622"],"synonyms":[{"name":"starch anabolism","type":"exact"},{"name":"starch biosynthesis","type":"exact"},{"name":"starch formation","type":"exact"},{"name":"starch synthesis","type":"exact"}],"termid":"GO:0019252"}


id: PBO:0033761
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-meiosis_I_metaphase/anaphase_transition_delay","termid":"PBO:0033761"}


id: PBO:0090978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"candidate Iss10 ortholog","termid":"PBO:0090978"}


id: GO:1904488
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A positive regulation of transcription from RNA polymerase II promoter that results in regulation of reactive oxygen species metabolic process.","definition_xrefs":["GOC:kmv","GO_REF:0000063","PMID:25961505","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of reactive oxygen species metabolic process by positive regulation of transcription from RNA polymerase II promoter (obsolete GO:1904488)","synonyms":[{"name":"regulation of ROS metabolic process by activation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of ROS metabolic process by activation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of ROS metabolic process by positive regulation of gene-specific transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of ROS metabolic process by positive regulation of global transcription from Pol II promoter","type":"related"},{"name":"regulation of ROS metabolic process by positive regulation of transcription from Pol II promoter","type":"exact"},{"name":"regulation of ROS metabolic process by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of ROS metabolic process by positive regulation of transcription from RNA polymerase II promoter, global","type":"related"},{"name":"regulation of ROS metabolic process by stimulation of global transcription from RNA polymerase II promoter","type":"narrow"},{"name":"regulation of ROS metabolic process by stimulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of ROS metabolic process by up regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of ROS metabolic process by up regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of ROS metabolic process by up-regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of ROS metabolic process by up-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of ROS metabolic process by upregulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of ROS metabolic process by upregulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolic process by activation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolic process by activation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolic process by positive regulation of gene-specific transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolic process by positive regulation of global transcription from Pol II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolic process by positive regulation of transcription from Pol II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolic process by positive regulation of transcription from RNA polymerase II promoter, global","type":"related"},{"name":"regulation of reactive oxygen species metabolic process by stimulation of global transcription from RNA polymerase II promoter","type":"narrow"},{"name":"regulation of reactive oxygen species metabolic process by stimulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolic process by up regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolic process by up regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolic process by up-regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolic process by up-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolic process by upregulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolic process by upregulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolism by activation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolism by activation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolism by positive regulation of gene-specific transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolism by positive regulation of global transcription from Pol II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolism by positive regulation of transcription from Pol II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolism by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolism by positive regulation of transcription from RNA polymerase II promoter, global","type":"related"},{"name":"regulation of reactive oxygen species metabolism by stimulation of global transcription from RNA polymerase II promoter","type":"narrow"},{"name":"regulation of reactive oxygen species metabolism by stimulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolism by up regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolism by up regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolism by up-regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolism by up-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolism by upregulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolism by upregulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:1904488"}


id: PBO:0042714
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell migration inducing hyaluronidase 2","termid":"PBO:0042714"}


id: PBO:0083931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fusion protein cleaved to yield ribosomal protein S31 and ubiquitin; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; interacts genetically with translation factor eIF2B; homologous to mammalian ribosomal protein S27A, no bacterial homolog","termid":"PBO:0083931"}


id: SO:0000236
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The in-frame interval between the stop codons of a reading frame which when read as sequential triplets, has the potential of encoding a sequential string of amino acids. TER(NNN)nTER.","definition_xrefs":["SO:ma","SGD:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reading_frame","termid":"SO:0000717"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ORF","synonyms":[{"name":"open reading frame","type":"exact"}],"termid":"SO:0000236"}


id: GO:1903281
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of calcium:sodium antiporter activity.","definition_xrefs":["GOC:rl","GOC:mtg_cardiac_conduct_nov11","GOC:TermGenie","PMID:19683723","GO_REF:0000059","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of calcium ion transmembrane transporter activity","termid":"GO:1901021"},{"relation_name":"is_a","term_name":"regulation of calcium:sodium antiporter activity","termid":"GO:1903279"},{"relation_name":"is_a","term_name":"positive regulation of sodium ion transmembrane transporter activity","termid":"GO:2000651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of calcium:sodium antiporter activity","synonyms":[{"name":"activation of calcium:sodium antiporter activity","type":"narrow"},{"name":"activation of mitochondrial sodium/calcium ion exchange","type":"related"},{"name":"activation of sodium/calcium exchanger","type":"narrow"},{"name":"activation of sodium:calcium exchange","type":"related"},{"name":"positive regulation of mitochondrial sodium/calcium ion exchange","type":"related"},{"name":"positive regulation of sodium/calcium exchanger","type":"exact"},{"name":"positive regulation of sodium:calcium exchange","type":"related"},{"name":"up regulation of calcium:sodium antiporter activity","type":"exact"},{"name":"up regulation of mitochondrial sodium/calcium ion exchange","type":"related"},{"name":"up regulation of sodium/calcium exchanger","type":"exact"},{"name":"up regulation of sodium:calcium exchange","type":"related"},{"name":"up-regulation of calcium:sodium antiporter activity","type":"exact"},{"name":"up-regulation of mitochondrial sodium/calcium ion exchange","type":"related"},{"name":"up-regulation of sodium/calcium exchanger","type":"exact"},{"name":"up-regulation of sodium:calcium exchange","type":"related"},{"name":"upregulation of calcium:sodium antiporter activity","type":"exact"},{"name":"upregulation of mitochondrial sodium/calcium ion exchange","type":"related"},{"name":"upregulation of sodium/calcium exchanger","type":"exact"},{"name":"upregulation of sodium:calcium exchange","type":"related"}],"termid":"GO:1903281"}


id: FYPO:0004497
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell is smaller than normal and contains two nuclei, when the cell is in a culture in stationary phase.","definition_xrefs":["PMID:8292390","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small cell","termid":"FYPO:0000023"},{"relation_name":"is_a","term_name":"multinucleate","termid":"FYPO:0003341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"small binucleate cell during stationary phase","synonyms":[{"name":"binucleate cell with decreased cell size during stationary phase","type":"exact"},{"name":"binucleate cell with reduced cell size during stationary phase","type":"exact"}],"termid":"FYPO:0004497"}


id: PBO:0090784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII-coated vesicle component Erv46","termid":"PBO:0090784"}


id: PBO:0057498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 616","termid":"PBO:0057498"}


id: PR:O60131
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC16G5.17 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60131"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transcriptional regulatory protein C16G5.17 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16G5.17","synonyms":[{"name":"Spom972h-SPBC16G5.17","type":"exact"}],"termid":"PR:O60131"}


id: GO:0018920
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving glyphosate, a broad-spectrum herbicide also known by the trade name Roundup. It is a member of a broad class of compounds known as phosphonic acids, which contain a direct carbon-to-phosphorus (C-P) bond.","definition_xrefs":["UM-BBD_pathwayID:gly"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular modified amino acid metabolic process","termid":"GO:0006575"},{"relation_name":"is_a","term_name":"phosphorus metabolic process","termid":"GO:0006793"},{"relation_name":"is_a","term_name":"oxoacid metabolic process","termid":"GO:0043436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"glyphosate metabolic process","synonyms":[{"name":"Roundup metabolic process","type":"exact"},{"name":"Roundup metabolism","type":"exact"},{"name":"glyphosate metabolism","type":"exact"}],"termid":"GO:0018920"}


id: PBO:0050583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heparan sulfate 6-O-sulfotransferase 1","termid":"PBO:0050583"}


id: GO:0050312
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-sulfoacetaldehyde + H2O = acetate + sulfite.","definition_xrefs":["EC:4.4.1.12","MetaCyc:SULFOACETALDEHYDE-LYASE-RXN"],"gene_count":0,"genotype_count":0,"name":"obsolete sulfoacetaldehyde lyase activity (obsolete GO:0050312)","synonyms":[{"name":"sulphoacetaldehyde lyase activity","type":"exact"}],"termid":"GO:0050312"}


id: PATO:0002069
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stratification","termid":"PATO:0002067"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unstratified","termid":"PATO:0002069"}


id: PBO:0063068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pannexin 1","termid":"PBO:0063068"}


id: PBO:0018098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L15 Mrp15 (predicted)","termid":"PBO:0018098"}


id: PATO:0001145
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001145 ig m concentration value (obsolete PATO:0001145)","termid":"PATO:0001145"}


id: GO:0031080
data:
  {"annotated_genes":["SJAG_01374","SJAG_03986","SJAG_03299","SJAG_01293","SJAG_00471","SJAG_02424","SJAG_03907","SJAG_02094","SJAG_04148","SJAG_04017"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[85186,85591,87106,88015,94077,101498,102696,105993,106559,109374],"is_not":false,"summary":null,"term":"GO:0031080"}]},"cv_name":"cellular_component","definition":"A subcomplex of the nuclear pore complex (NPC) that forms the outer rings of the core scaffold, a lattice-like structure that gives the NPC its shape and strength. In S. cerevisiae, the two outer rings each contain multiple copies of the following proteins: Nup133p, Nup120p, Nup145Cp, Nup85p, Nup84p, Seh1p, and Sec13p. In vertebrates, the two outer rings each contain multiple copies of the following proteins: Nup133, Nup160, Nup96, Nup75, Nup107, Seh1, Sec13, Nup43, Nup37, and ALADIN. Components are arranged in 8-fold symmetrical 'spokes' around the central transport channel. A single 'spoke', can be isolated and is sometimes referred to as the Nup84 complex (S. cerevisiae) or the Nup107-160 complex (vertebrates).","definition_xrefs":["GOC:dgf","PMID:18046406","PMID:20947011","PMID:22419078","PMID:19524430"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"part_of","term_name":"nuclear pore","termid":"GO:0005643"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00471":null,"SJAG_01293":null,"SJAG_01374":null,"SJAG_02094":null,"SJAG_02424":null,"SJAG_03299":null,"SJAG_03907":null,"SJAG_03986":null,"SJAG_04017":null,"SJAG_04148":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005643"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005634","GO:0005643"],"is_obsolete":false,"name":"nuclear pore outer ring","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Nup107-120 complex","type":"exact"},{"name":"Nup107-160 complex","type":"exact"},{"name":"Nup84 complex","type":"exact"}],"termid":"GO:0031080","terms_by_termid":{"GO:0031080":null}}


id: FYPO:0002555
data:
  {"alleles_by_uniquename":{"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115207],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007177"}],"single_locus_phenotype":[{"annotations":[115196,115204,115208,115197],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007177"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the medial cortex of a cell is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to medial cortex during vegetative growth","termid":"FYPO:0000731"},{"relation_name":"is_a","term_name":"abolished protein localization to cell cortex during vegetative growth","termid":"FYPO:0000930"},{"relation_name":"is_a","term_name":"abolished protein localization to medial cortex","termid":"FYPO:0001371"},{"relation_name":"is_a","term_name":"abolished protein localization to cell division site","termid":"FYPO:0001880"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01143":null,"SJAG_01665":null,"SJAG_02392":null,"SJAG_03596":null,"SJAG_03703":null,"SJAG_04498":null},"genotype_count":2,"genotypes_by_uniquename":{"mid1delta":{"display_name":"mid1delta","display_uniquename":"mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},"mid1delta__pom1delta":{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_01143","SJAG_02392"],"name":"abolished protein localization to medial cortex during vegetative growth","references_by_uniquename":{"PMID:25866389":null},"single_locus_annotated_genes":["SJAG_01143"],"single_locus_genotype_uniquenames":["mid1delta"],"synonyms":[{"name":"abolished protein localisation to medial cortex during vegetative growth","type":"exact"},{"name":"abolished protein localization to medial cortex during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to medial ring during vegetative growth","type":"exact"},{"name":"protein localization to medial cortex abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0002555","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0007177":null}}


id: GO:1903960
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of anion transmembrane transport.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of monoatomic ion transmembrane transport","termid":"GO:0034766"},{"relation_name":"is_a","term_name":"negative regulation of monoatomic anion transport","termid":"GO:1903792"},{"relation_name":"is_a","term_name":"regulation of monoatomic anion transmembrane transport","termid":"GO:1903959"},{"relation_name":"negatively_regulates","term_name":"monoatomic anion transmembrane transport","termid":"GO:0098656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of anion transmembrane transport","synonyms":[{"name":"down regulation of anion transmembrane transport","type":"exact"},{"name":"down-regulation of anion transmembrane transport","type":"exact"},{"name":"downregulation of anion transmembrane transport","type":"exact"},{"name":"inhibition of anion transmembrane transport","type":"narrow"}],"termid":"GO:1903960"}


id: PBO:0050061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLCS antisense RNA 1","termid":"PBO:0050061"}


id: GO:2000086
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mesenchymal to epithelial transition involved in mesonephros morphogenesis.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mesenchymal to epithelial transition involved in mesonephros morphogenesis","termid":"GO:2000084"},{"relation_name":"is_a","term_name":"positive regulation of epithelial cell differentiation involved in kidney development","termid":"GO:2000698"},{"relation_name":"positively_regulates","term_name":"mesenchymal to epithelial transition involved in mesonephros morphogenesis","termid":"GO:0061261"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of mesenchymal to epithelial transition involved in mesonephros morphogenesis","synonyms":[{"name":"positive regulation of mesonephric mesenchyme to epithelial transition","type":"related"}],"termid":"GO:2000086"}


id: PBO:0070842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L13a pseudogene 21","termid":"PBO:0070842"}


id: PBO:0040046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARPC1A pseudogene 2","termid":"PBO:0040046"}


id: GO:0021699
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellar cortex to attain its fully functional state. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function.","definition_xrefs":["GOC:cls","ISBN:0838580343","GOC:dph","GOC:dgh","GOC:jid","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure maturation","termid":"GO:0071695"},{"relation_name":"part_of","term_name":"cerebellum maturation","termid":"GO:0021590"},{"relation_name":"part_of","term_name":"cerebellar cortex development","termid":"GO:0021695"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellar cortex maturation","termid":"GO:0021699"}


id: GO:0097265
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-HETE + NADP+ = 5-oxo-ETE + NADPH + H+.","definition_xrefs":["GOC:mw","PMID:1326548"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"5(S)-hydroxyeicosatetraenoic acid dehydrogenase activity","secondary_identifiers":["Reactome:R-HSA-2161776"],"synonyms":[{"name":"5(S)-HETE dehydrogenase activity","type":"exact"},{"name":"5-HETE dehydrogenase activity","type":"exact"},{"name":"5-hydroxy-eicosatetraenoic acid dehydrogenase activity","type":"exact"}],"termid":"GO:0097265"}


id: PBO:0001251
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"argininemia","termid":"PBO:0001251"}


id: PBO:0055803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysophosphatidic acid receptor 5","termid":"PBO:0055803"}


id: PBO:0055967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeats and death domain containing 1","termid":"PBO:0055967"}


id: GO:0047306
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-methionine + pyruvate = 4-methylthio-2-oxobutanoate + L-alanine.","definition_xrefs":["EC:2.6.1.41","RHEA:23836"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0016769","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"D-methionine-pyruvate transaminase activity","secondary_identifiers":["KEGG_REACTION:R03001","MetaCyc:2.6.1.41-RXN"],"synonyms":[{"name":"D-methionine aminotransferase activity","type":"related"},{"name":"D-methionine transaminase activity","type":"related"},{"name":"D-methionine--pyruvate aminotransferase activity","type":"related"},{"name":"D-methionine-pyruvate aminotransferase activity","type":"exact"},{"name":"D-methionine:pyruvate aminotransferase activity","type":"related"}],"termid":"GO:0047306"}


id: GO:0034510
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which centromeres are physically detached from each other during chromosome separation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"part_of","term_name":"chromosome separation","termid":"GO:0051304"},{"relation_name":"part_of","term_name":"nuclear chromosome segregation","termid":"GO:0098813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"centromere separation","termid":"GO:0034510"}


id: PBO:0087164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase III subunit C25; required for transcription initiation; forms a heterodimer with Rpc17p; paralog of Rpb7p","termid":"PBO:0087164"}


id: PR:Q09731
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- bun107 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09731"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBP9-binding protein bun107 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31A2.14","synonyms":[{"name":"Spom972h-bun107","type":"exact"},{"name":"binding ubp9 protein of 107 kDa (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09731"}


id: PBO:0076752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"teratocarcinoma-derived growth factor 1 pseudogene 2","termid":"PBO:0076752"}


id: PBO:0084164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Highly conserved negative regulator of RNA polymerase III; involved in tRNA processing and stability; inhibits tRNA degradation via rapid tRNA decay (RTD) pathway; binds N-terminal domain of Rpc160p subunit of Pol III to prevent closed-complex formation; regulated by phosphorylation mediated by TORC1, protein kinase A, Sch9p, casein kinase 2; localizes to cytoplasm during vegetative growth and translocates to nucleus and nucleolus under stress conditions","termid":"PBO:0084164"}


id: PBO:0006268
data:
  {"annotation_feature_type":"gene","cv_name":"feature_cvtermprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_product_form_id","termid":"PBO:0006268"}


id: GO:0031515
data:
  {"annotated_genes":["SJAG_02386","SJAG_02637"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[97091,108277],"is_not":false,"summary":null,"term":"GO:0031515"}]},"cv_name":"cellular_component","definition":"A protein complex involved in the catalysis of the formation of the modified nucleotide 1-methyladenosine (m1A) in tRNA. In yeast, it is a heterotetramer of two subunits, Gcd10p and Gcd14p, while in bacteria and archaea it is a homotetramer.","definition_xrefs":["PMID:14739239","PMID:10779558"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA methyltransferase complex","termid":"GO:0043527"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02386":null,"SJAG_02637":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"tRNA (m1A) methyltransferase complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0031515","terms_by_termid":{"GO:0031515":null}}


id: GO:2001067
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to pullulan.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide binding","termid":"GO:0030247"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"pullulan binding","termid":"GO:2001067"}


id: PBO:0082711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the mitochondrial TIM22 complex; involved in insertion of polytopic proteins into the inner membrane","termid":"PBO:0082711"}


id: GO:0019309
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of mannose, the aldohexose manno-hexose, the C-2 epimer of glucose.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannose metabolic process","termid":"GO:0006013"},{"relation_name":"is_a","term_name":"hexose catabolic process","termid":"GO:0019320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"mannose catabolic process","synonyms":[{"name":"mannose breakdown","type":"exact"},{"name":"mannose catabolism","type":"exact"},{"name":"mannose degradation","type":"exact"}],"termid":"GO:0019309"}


id: PBO:0039912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho guanine nucleotide exchange factor 10 like","termid":"PBO:0039912"}


id: PBO:0002864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apoptosis-inducing factor homolog Aif1 (predicted)","termid":"PBO:0002864"}


id: GO:0070559
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex found in the lysosome that contains beta-galactosidase, cathepsin A, alpha-neuraminidase and N-acetylgalactosamine-6-sulfate sulfatase, and is involved in glycosaminoglycan catabolism.","definition_xrefs":["GOC:mah","PMID:8910459"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"lysosome","termid":"GO:0005764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005773"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991","GO:0005773"],"is_obsolete":false,"name":"lysosomal multienzyme complex","synonyms":[{"name":"GALNS-lysosomal hydrolase 1.27 MDa complex","type":"narrow"}],"termid":"GO:0070559"}


id: GO:0015175
data:
  {"annotated_genes":["SJAG_00626","SJAG_02029","SJAG_04725","SJAG_04984","SJAG_04718","SJAG_04637","SJAG_04295"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[115074,109823],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033229"},{"annotations":[94364,96363],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015187"},{"annotations":[106158,98932],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015182"},{"annotations":[98933,106159],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015188"},{"annotations":[96480,97338],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015193"}]},"cv_name":"molecular_function","definition":"Enables the transfer of neutral L-amino acids from one side of a membrane to the other. Neutral amino acids have side chains with no charge at pH 7.3.","definition_xrefs":["GOC:ai","GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane transporter activity","termid":"GO:0015171"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00626":null,"SJAG_02029":null,"SJAG_04295":null,"SJAG_04637":null,"SJAG_04718":null,"SJAG_04725":null,"SJAG_04984":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"neutral L-amino acid transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"neutral amino acid transmembrane transporter activity","type":"exact"},{"name":"neutral amino acid transporter activity","type":"broad"}],"termid":"GO:0015175","terms_by_termid":{"GO:0015182":null,"GO:0015187":null,"GO:0015188":null,"GO:0015193":null,"GO:0033229":null}}


id: FYECO:0000191
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which biotin was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ biotin","termid":"FYECO:0000191"}


id: FYPO:0002045
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which cells show decreased sensitivity to heat shock. Heat shock is a form of heat stress in which cells are briefly exposed to a very high temperature.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"resistance to stress","termid":"FYPO:0002046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"resistance to heat shock","synonyms":[{"name":"increased cell population growth during cellular response to heat shock","type":"exact"},{"name":"increased growth during cellular response to heat shock","type":"exact"},{"name":"resistant to heat shock","type":"exact"}],"termid":"FYPO:0002045"}


id: PBO:0065529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patched domain containing 3 pseudogene 1","termid":"PBO:0065529"}


id: GO:0030660
data:
  {"annotated_genes":["SJAG_04517","SJAG_04474","SJAG_04002","SJAG_04609","SJAG_04391","SJAG_01809","SJAG_04565","SJAG_00192","SJAG_02234","SJAG_04070","SJAG_02482","SJAG_02282","SJAG_04569","SJAG_00379","SJAG_01508"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[97249,109124,108906,114945],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030121"},{"annotations":[91025,109028],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030130"},{"annotations":[100246,94588,94679,112489,103249,89356,99396,113490,109879],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030126"}]},"cv_name":"cellular_component","definition":"The lipid bilayer surrounding a vesicle associated with the Golgi apparatus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle membrane","termid":"GO:0030659"},{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"},{"relation_name":"part_of","term_name":"Golgi-associated vesicle","termid":"GO:0005798"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00192":null,"SJAG_00379":null,"SJAG_01508":null,"SJAG_01809":null,"SJAG_02234":null,"SJAG_02282":null,"SJAG_02482":null,"SJAG_04002":null,"SJAG_04070":null,"SJAG_04391":null,"SJAG_04474":null,"SJAG_04517":null,"SJAG_04565":null,"SJAG_04569":null,"SJAG_04609":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"Golgi-associated vesicle membrane","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Golgi vesicle membrane","type":"related"}],"termid":"GO:0030660","terms_by_termid":{"GO:0030121":null,"GO:0030126":null,"GO:0030130":null}}


id: GO:0035196
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process leading to the generation of a functional miRNA. Includes the cleavage of stem-loop RNA precursors into microRNAs (miRNAs). miRNAs are a class of small RNAs that primarily silence genes by blocking the translation of mRNA transcripts into protein, or by increasing the degradation of non-protein-coding RNA transcripts.","definition_xrefs":["PMID:15066283","PMID:28379604","PMID:23985560","GOC:rl","PMID:15066275","GOC:aruk","GOC:bc","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory ncRNA processing","termid":"GO:0070918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"miRNA processing","secondary_identifiers":["GO:0030918"],"synonyms":[{"name":"gene silencing by miRNA, production of miRNAs","type":"exact"},{"name":"miRNA biogenesis","type":"related"},{"name":"miRNA biosynthetic process","type":"broad"},{"name":"miRNA maturation","type":"exact"},{"name":"miRNA-mediated gene silencing, production of miRNAs","type":"exact"},{"name":"microRNA biogenesis","type":"exact"},{"name":"microRNA biosynthesis","type":"broad"},{"name":"microRNA biosynthetic process","type":"broad"},{"name":"microRNA metabolic process","type":"broad"},{"name":"microRNA metabolism","type":"broad"},{"name":"microRNA processing","type":"exact"},{"name":"microRNA-mediated gene silencing, production of microRNAs","type":"exact"},{"name":"production of miRNAs involved in gene silencing by miRNA","type":"exact"},{"name":"production of microRNAs involved in gene silencing by microRNA","type":"exact"}],"termid":"GO:0035196"}


id: GO:1903298
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of hypoxia-induced intrinsic apoptotic signaling pathway.","definition_xrefs":["GO_REF:0000058","GOC:bf","GOC:PARL","GOC:TermGenie","PMID:24553947"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular response to hypoxia","termid":"GO:1900038"},{"relation_name":"is_a","term_name":"regulation of hypoxia-induced intrinsic apoptotic signaling pathway","termid":"GO:1903297"},{"relation_name":"is_a","term_name":"negative regulation of intrinsic apoptotic signaling pathway","termid":"GO:2001243"},{"relation_name":"negatively_regulates","term_name":"intrinsic apoptotic signaling pathway in response to hypoxia","termid":"GO:1990144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of hypoxia-induced intrinsic apoptotic signaling pathway","synonyms":[{"name":"down regulation of intrinsic apoptotic signaling pathway in response to hypoxia","type":"exact"},{"name":"down-regulation of intrinsic apoptotic signaling pathway in response to hypoxia","type":"exact"},{"name":"downregulation of intrinsic apoptotic signaling pathway in response to hypoxia","type":"exact"},{"name":"inhibition of intrinsic apoptotic signaling pathway in response to hypoxia","type":"narrow"},{"name":"negative regulation of hypoxia-induced apoptosis","type":"related"},{"name":"negative regulation of hypoxic stress-induced intrinsic apoptotic signaling pathway","type":"exact"},{"name":"negative regulation of intrinsic apoptotic signaling pathway in response to hypoxia","type":"exact"},{"name":"protection against hypoxia-induced apoptosis","type":"related"}],"termid":"GO:1903298"}


id: FYPO:0004853
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype that affects the localization of an RNA in a cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization phenotype","termid":"FYPO:0000138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"RNA localization phenotype","synonyms":[{"name":"RNA localisation phenotype","type":"exact"},{"name":"fission yeast RNA localization phenotype","type":"exact"}],"termid":"FYPO:0004853"}


id: PBO:0063176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate and breast cancer overexpressed 1","termid":"PBO:0063176"}


id: FYPO_EXT:0000001
data:
  {"annotation_feature_type":"gene","cv_name":"fypo_extensions","definition":"large fraction of cells (penetrance) or strong phenotype (severity)","definition_xrefs":["PomBase:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"FYPO severity extension","termid":"FYPO_EXT:1000001"},{"relation_name":"is_a","term_name":"FYPO penetrance extension","termid":"FYPO_EXT:1000002"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high","termid":"FYPO_EXT:0000001"}


id: PATO:0001575
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A pressure which is relatively low.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"pressure","termid":"PATO:0001025"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased pressure","synonyms":[{"name":"low pressure","type":"exact"}],"termid":"PATO:0001575"}


id: PBO:0068264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease A family member 1, pancreatic","termid":"PBO:0068264"}


id: PBO:0082562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chaperone and import receptor for newly-synthesized class I PMPs; binds peroxisomal membrane proteins (PMPs) in the cytoplasm and delivers them to the peroxisome for subsequent insertion into the peroxisomal membrane; interacts with Myo2p and contributes to peroxisome partitioning","termid":"PBO:0082562"}


id: PBO:0034207
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-intercellular_endoparasite_of","termid":"PBO:0034207"}


id: GO:0031535
data:
  {"annotated_genes":["SJAG_01613","SJAG_03073"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95361],"is_not":false,"summary":null,"term":"GO:0031535"},{"annotations":[97564],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0062168"}]},"cv_name":"biological_process","definition":"The movement of one microtubule along another microtubule, where the motion is directed towards the plus ends of the microtubules.","definition_xrefs":["GOC:mah","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule sliding","termid":"GO:0051012"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01613":null,"SJAG_03073":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"plus-end directed microtubule sliding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0031535","terms_by_termid":{"GO:0031535":null,"GO:0062168":null}}


id: GO:0120203
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by the membrane of a rod photoreceptor cell disc membrane.","definition_xrefs":["PMID:6771304","GOC:krc","GOC:pde","PMID:19501669","PMID:26574505"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle lumen","termid":"GO:0043233"},{"relation_name":"part_of","term_name":"rod photoreceptor outer segment","termid":"GO:0120200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"rod photoreceptor disc lumen","termid":"GO:0120203"}


id: PBO:0066157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBBP8 N-terminal like","termid":"PBO:0066157"}


id: PBO:0062022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily M member 3","termid":"PBO:0062022"}


id: PBO:0076603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 22B","termid":"PBO:0076603"}


id: PBO:0065029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxiredoxin 5","termid":"PBO:0065029"}


id: GO:0071857
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a beta-endorphin receptor.","definition_xrefs":["GOC:kmv","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor binding","termid":"GO:0071855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"beta-endorphin receptor binding","termid":"GO:0071857"}


id: GO:0045672
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of osteoclast differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of myeloid leukocyte differentiation","termid":"GO:0002763"},{"relation_name":"is_a","term_name":"regulation of osteoclast differentiation","termid":"GO:0045670"},{"relation_name":"positively_regulates","term_name":"osteoclast differentiation","termid":"GO:0030316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of osteoclast differentiation","synonyms":[{"name":"activation of osteoclast differentiation","type":"narrow"},{"name":"stimulation of osteoclast differentiation","type":"narrow"},{"name":"up regulation of osteoclast differentiation","type":"exact"},{"name":"up-regulation of osteoclast differentiation","type":"exact"},{"name":"upregulation of osteoclast differentiation","type":"exact"}],"termid":"GO:0045672"}


id: GO:0141125
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: queuosine34 in tRNA + UDP-alpha-D-galactose = H+ + O-5''-beta-D-galactosylqueuosine34 in tRNATyr + UDP. Substrates include tRNA(Tyr) and tRNA(Asp).","definition_xrefs":["PMID:37992713"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-galactosyltransferase activity","termid":"GO:0035250"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0016757","GO:0140101","GO:0140098","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"tRNA-queuosine(34) galactosyltransferase activity","secondary_identifiers":["RHEA:78231"],"synonyms":[{"name":"tRNA queuosine galactosyltransferase activity","type":"broad"},{"name":"tRNA queuosine(34) galactosyltransferase activity","type":"exact"}],"termid":"GO:0141125"}


id: _global:assayed_substrate
data:
  {"annotation_feature_type":"gene","cv_name":"fypo_extension_relations","definition":"Relation between a catalytic activity phenotype and a substrate, such as a gene product, with which the phenotype was assayed.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"assayed_using","termid":"_global:assayed_using"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"assayed_substrate","termid":"_global:assayed_substrate"}


id: PBO:0054280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1671","termid":"PBO:0054280"}


id: GO:1905322
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mesenchymal stem cell migration.","definition_xrefs":["PMID:26846297","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell migration","termid":"GO:0030335"},{"relation_name":"is_a","term_name":"regulation of mesenchymal stem cell migration","termid":"GO:1905320"},{"relation_name":"positively_regulates","term_name":"mesenchymal stem cell migration","termid":"GO:1905319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of mesenchymal stem cell migration","synonyms":[{"name":"activation of mesenchymal stem cell migration","type":"narrow"},{"name":"up regulation of mesenchymal stem cell migration","type":"exact"},{"name":"up-regulation of mesenchymal stem cell migration","type":"exact"},{"name":"upregulation of mesenchymal stem cell migration","type":"exact"}],"termid":"GO:1905322"}


id: MOD:01465
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-methioninium (protonated L-methionine) residue to an N6,N6,N6-trimethyl-L-methionine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"protonated L-methionine (L-methioninium) residue","termid":"MOD:01464"},{"relation_name":"is_a","term_name":"alpha-amino trimethylated residue","termid":"MOD:01687"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N,N,N-trimethyl-L-methionine (from L-methioninium)","synonyms":[{"name":"N2Me3Met","type":"exact"}],"termid":"MOD:01465"}


id: PBO:0084475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mating pheromone a-factor; made by a cells; interacts with alpha cells to induce cell cycle arrest and other responses leading to mating; biogenesis involves C-terminal modification, N-terminal proteolysis, and export; also encoded by MFA2","termid":"PBO:0084475"}


id: GO:0042683
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that restricts, stops or prevents a cell from specifying into a compound eye cone cell.","definition_xrefs":["GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell fate specification","termid":"GO:0009996"},{"relation_name":"is_a","term_name":"regulation of compound eye cone cell fate specification","termid":"GO:0042682"},{"relation_name":"negatively_regulates","term_name":"compound eye cone cell fate specification","termid":"GO:0042679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of compound eye cone cell fate specification","secondary_identifiers":["GO:0010000"],"synonyms":[{"name":"down regulation of cone cell fate specification","type":"broad"},{"name":"down-regulation of cone cell fate specification","type":"broad"},{"name":"downregulation of cone cell fate specification","type":"broad"},{"name":"inhibition of cone cell fate specification","type":"broad"},{"name":"suppression of cone cell fate","type":"broad"}],"termid":"GO:0042683"}


id: PBO:0028410
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_cadmium_level_during_cellular_response_to_cadmium_ion","termid":"PBO:0028410"}


id: GO:0140523
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A GTPase activity that mediates the joining two lipid bilayers to form a single membrane.","definition_xrefs":["PMID:29663589"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fusogenic activity","termid":"GO:0140522"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"GTPase-dependent fusogenic activity","synonyms":[{"name":"membrane fusion GTPase activity","type":"exact"}],"termid":"GO:0140523"}


id: GO:0090394
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that prevents the establishment or decreases the extent of the excitatory postsynaptic potential (EPSP) which is a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of biological process","termid":"GO:0048519"},{"relation_name":"is_a","term_name":"modulation of excitatory postsynaptic potential","termid":"GO:0098815"},{"relation_name":"negatively_regulates","term_name":"excitatory postsynaptic potential","termid":"GO:0060079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of excitatory postsynaptic potential","synonyms":[{"name":"negative regulation of EPSP","type":"related"},{"name":"negative regulation of excitatory post-synaptic membrane potential","type":"exact"},{"name":"reduction of excitatory postsynaptic membrane potential","type":"exact"}],"termid":"GO:0090394"}


id: PBO:0069303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 559, pseudogene","termid":"PBO:0069303"}


id: PBO:0034366
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_in-paralogy_relationship_with","termid":"PBO:0034366"}


id: GO:1900718
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of violaceol II biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"positive regulation of secondary metabolite biosynthetic process","termid":"GO:1900378"},{"relation_name":"is_a","term_name":"regulation of violaceol II biosynthetic process","termid":"GO:1900716"},{"relation_name":"positively_regulates","term_name":"violaceol II biosynthetic process","termid":"GO:1900593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0019748","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"positive regulation of violaceol II biosynthetic process","synonyms":[{"name":"activation of violaceol II anabolism","type":"exact"},{"name":"activation of violaceol II biosynthesis","type":"exact"},{"name":"activation of violaceol II biosynthetic process","type":"narrow"},{"name":"activation of violaceol II formation","type":"exact"},{"name":"activation of violaceol II synthesis","type":"exact"},{"name":"positive regulation of violaceol II anabolism","type":"exact"},{"name":"positive regulation of violaceol II biosynthesis","type":"exact"},{"name":"positive regulation of violaceol II formation","type":"exact"},{"name":"positive regulation of violaceol II synthesis","type":"exact"},{"name":"up regulation of violaceol II anabolism","type":"exact"},{"name":"up regulation of violaceol II biosynthesis","type":"exact"},{"name":"up regulation of violaceol II biosynthetic process","type":"exact"},{"name":"up regulation of violaceol II formation","type":"exact"},{"name":"up regulation of violaceol II synthesis","type":"exact"},{"name":"up-regulation of violaceol II anabolism","type":"exact"},{"name":"up-regulation of violaceol II biosynthesis","type":"exact"},{"name":"up-regulation of violaceol II biosynthetic process","type":"exact"},{"name":"up-regulation of violaceol II formation","type":"exact"},{"name":"up-regulation of violaceol II synthesis","type":"exact"},{"name":"upregulation of violaceol II anabolism","type":"exact"},{"name":"upregulation of violaceol II biosynthesis","type":"exact"},{"name":"upregulation of violaceol II biosynthetic process","type":"exact"},{"name":"upregulation of violaceol II formation","type":"exact"},{"name":"upregulation of violaceol II synthesis","type":"exact"}],"termid":"GO:1900718"}


id: GO:0001400
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region where the mating projection meets the bulk of the cell, in unicellular fungi exposed to mating pheromone.","definition_xrefs":["GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"mating projection","termid":"GO:0005937"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"mating projection base","synonyms":[{"name":"base of shmoo tip","type":"narrow"},{"name":"conjugation tube base","type":"narrow"}],"termid":"GO:0001400"}


id: GO:0102732
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1L-myo-inositol 1,2,3,4,6-pentakisphosphate(10-) + ATP = H+ + myo-inositol hexakisphosphate(12-) + ADP.","definition_xrefs":["GOC:pz","EC:2.7.1.140"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"myo-inositol-1,2,3,4,6-heptakisphosphate 5-kinase activity","secondary_identifiers":["MetaCyc:RXN-7186"],"termid":"GO:0102732"}


id: GO:0018591
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: methyl tert-butyl ether + 1/2 O2 = tert-butyl alcohol + formaldehyde.","definition_xrefs":["UM-BBD_reactionID:r1023"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"methyl tertiary butyl ether 3-monooxygenase activity","synonyms":[{"name":"MTBE 3-monooxygenase activity","type":"exact"}],"termid":"GO:0018591"}


id: GO:0004192
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of peptide bonds. Specificity similar to, but narrower than, that of pepsin A. Does not cleave the Gln4-His5 bond in the B chain of insulin.","definition_xrefs":["EC:3.4.23.5"],"gene_count":0,"genotype_count":0,"name":"obsolete cathepsin D activity (obsolete GO:0004192)","synonyms":[{"name":"cathepsin D activity","type":"exact"}],"termid":"GO:0004192"}


id: PBO:0043871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cAMP responsive element binding protein 3","termid":"PBO:0043871"}


id: PBO:0038731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin gamma 2, smooth muscle","termid":"PBO:0038731"}


id: GO:0017015
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transmembrane receptor protein serine/threonine kinase signaling pathway","termid":"GO:0090092"},{"relation_name":"is_a","term_name":"regulation of cellular response to transforming growth factor beta stimulus","termid":"GO:1903844"},{"relation_name":"regulates","term_name":"transforming growth factor beta receptor signaling pathway","termid":"GO:0007179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of transforming growth factor beta receptor signaling pathway","synonyms":[{"name":"regulation of TGF-beta receptor signaling pathway","type":"exact"},{"name":"regulation of TGFbeta receptor signaling pathway","type":"exact"},{"name":"regulation of transforming growth factor beta receptor signalling pathway","type":"exact"}],"termid":"GO:0017015"}


id: PBO:0083194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the verified gene GAS1/YMR307W","termid":"PBO:0083194"}


id: GO:0048936
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Generation of a long process from a neuron whose cell body resides in the peripheral nervous system. The axon carries action potential from the cell body towards target cells.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axonogenesis","termid":"GO:0007409"},{"relation_name":"part_of","term_name":"peripheral nervous system neuron development","termid":"GO:0048935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peripheral nervous system neuron axonogenesis","termid":"GO:0048936"}


id: PBO:0041701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CALHM6 antisense RNA 1","termid":"PBO:0041701"}


id: PBO:0074876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 58A","termid":"PBO:0074876"}


id: GO:0004848
data:
  {"annotated_genes":["SJAG_05287"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87919],"is_not":false,"summary":null,"term":"GO:0004848"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-ureidoglycolate + H2O + 2 H+ = CO2 + glyoxylate + 2 NH4.","definition_xrefs":["RHEA:19809"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05287":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016810"],"is_obsolete":false,"name":"ureidoglycolate hydrolase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R00469","EC:3.5.1.116","MetaCyc:UREIDOGLYCOLATE-HYDROLASE-RXN"],"synonyms":[{"name":"ureidoglycolate amidohydrolase activity","type":"exact"}],"termid":"GO:0004848","terms_by_termid":{"GO:0004848":null}}


id: RO:0002019
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.","direct_ancestors":[{"relation_name":"is_a","term_name":"has_input","termid":"RO:0002233"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_ligand","termid":"RO:0002019"}


id: PBO:0035734
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_cytoplasmic_microtubule_plus-end_during_mitotic_interphase","termid":"PBO:0035734"}


id: FYPO:0004703
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is viable, is longer and has a larger volume than normal, and is curved along the long axis. In a curved cell, the long axis follows a smooth bend rather than a straight line.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viable curved elongated vegetative cell","termid":"FYPO:0002215"},{"relation_name":"is_a","term_name":"viable swollen vegetative cell with abnormal cell shape","termid":"FYPO:0002402"},{"relation_name":"is_a","term_name":"viable swollen elongated vegetative cell","termid":"FYPO:0002479"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000004","FYPO:0000002","FYPO:0000005"],"is_obsolete":false,"name":"viable curved, elongated, swollen vegetative cell","synonyms":[{"name":"curved elongated swollen viable cell","type":"exact"},{"name":"viable curved swollen elongated cell","type":"exact"},{"name":"viable curved, elongated, swollen cell during vegetative growth","type":"exact"},{"name":"viable curved, elongated, swollen vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004703"}


id: PBO:0028050
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-spindle_pole_bodies_present_in_increased_numbers_during_meiosis","termid":"PBO:0028050"}


id: PBO:0046817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid amide hydrolase 2","termid":"PBO:0046817"}


id: GO:1904666
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of ubiquitin protein ligase activity.","definition_xrefs":["GOC:vw","GOC:TermGenie","PMID:10921876","GOC:dph","GO_REF:0000059","PMID:26216882"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ubiquitin-protein transferase activity","termid":"GO:0051438"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of ubiquitin protein ligase activity","secondary_identifiers":["GO:1903834"],"synonyms":[{"name":"regulation of APC-fizzy related complex activity","type":"narrow"},{"name":"regulation of E3","type":"related"},{"name":"regulation of protein ubiquitination activity","type":"exact"},{"name":"regulation of ubiquitin ligase activity","type":"exact"}],"termid":"GO:1904666"}


id: PBO:0050281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heme oxygenase 1","termid":"PBO:0050281"}


id: PBO:0087646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex; complex is heme-activated and glucose-repressed; complex is a transcriptional activator and global regulator of respiratory gene expression; contains sequences contributing to both complex assembly and DNA binding","termid":"PBO:0087646"}


id: GO:0048172
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that modulates short-term neuronal synaptic plasticity, the ability of neuronal synapses to change in the short-term as circumstances require. Short-term neuronal synaptic plasticity generally involves increasing or decreasing synaptic sensitivity.","definition_xrefs":["PMID:11891290","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neuronal synaptic plasticity","termid":"GO:0048168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of short-term neuronal synaptic plasticity","termid":"GO:0048172"}


id: PBO:0061483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuregulin 2","termid":"PBO:0061483"}


id: GO:2000387
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of antral ovarian follicle growth.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental growth","termid":"GO:0048638"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"antral ovarian follicle growth","termid":"GO:0001547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of antral ovarian follicle growth","termid":"GO:2000387"}


id: PBO:0108996
data:
  {"annotation_feature_type":"gene","cv_name":"feature_cvtermprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"submitter_comment","termid":"PBO:0108996"}


id: PBO:0009818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eisosome protein Pil1","termid":"PBO:0009818"}


id: PBO:0080106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UTP20 small subunit processome component","termid":"PBO:0080106"}


id: GO:1904798
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of core promoter binding.","definition_xrefs":["GO_REF:0000059","GOC:BHF","GOC:BHF_telomere","GOC:nc","GOC:TermGenie","PMID:22723415"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of core promoter binding","termid":"GO:1904796"},{"relation_name":"is_a","term_name":"positive regulation of transcription regulatory region DNA binding","termid":"GO:2000679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of core promoter binding","synonyms":[{"name":"activation of core promoter binding","type":"narrow"},{"name":"up regulation of core promoter binding","type":"exact"},{"name":"up-regulation of core promoter binding","type":"exact"},{"name":"upregulation of core promoter binding","type":"exact"}],"termid":"GO:1904798"}


id: PBO:0069648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 925, pseudogene","termid":"PBO:0069648"}


id: PBO:0079483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin","termid":"PBO:0079483"}


id: PR:O42857
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tumor suppressor candidate 4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12991:SF10","PRO:DNx","OMA:SCHPO01041"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nitrogen permease regulator 2 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23H3.03c","secondary_identifiers":["UniProtKB:O42857"],"synonyms":[{"name":"Spom972h-NPRL2","type":"exact"}],"termid":"PR:O42857"}


id: PBO:0052396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member C2","termid":"PBO:0052396"}


id: GO:0050793
data:
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id: PBO:0080282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 45 pseudogene","termid":"PBO:0080282"}


id: GO:0106396
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of R7 cell fate commitment.","definition_xrefs":["GOC:ha","PMID:22878552"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell fate commitment","termid":"GO:0010453"},{"relation_name":"regulates","term_name":"R7 cell fate commitment","termid":"GO:0007465"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of R7 cell fate commitment","termid":"GO:0106396"}


id: PBO:0005419
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vigilin (predicted)","termid":"PBO:0005419"}


id: PBO:0027208
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_heterochromatin_during_meiosis","termid":"PBO:0027208"}


id: FYPO:0002693
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of diamide (N,N,N',N'-tetramethyldiazene-1,2-dicarboxamide) than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0002682","FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0005447"],"is_obsolete":false,"name":"resistance to diamide","synonyms":[{"name":"resistance to N,N,N',N'-tetramethyldiazene-1,2-dicarboxamide","type":"exact"},{"name":"resistance to diamide during mitotic cell cycle","type":"related"},{"name":"resistance to diamide during vegetative growth","type":"exact"},{"name":"resistant to diamide","type":"exact"}],"termid":"FYPO:0002693"}


id: PBO:0043000
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chitinase 3 like 1","termid":"PBO:0043000"}


id: PBO:0078617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 66","termid":"PBO:0078617"}


id: PBO:0051688
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"indolethylamine N-methyltransferase","termid":"PBO:0051688"}


id: PBO:0030502
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_cell_cycle_checkpoint","termid":"PBO:0030502"}


id: PBO:0040972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BNIP3 pseudogene 43","termid":"PBO:0040972"}


id: PATO:0000797
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000797 urination value (obsolete PATO:0000797)","termid":"PATO:0000797"}


id: GO:1905947
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id: PBO:0052686
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 10","termid":"PBO:0052686"}


id: GO:0046024
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase III that occurs during the mitotic cell cycle.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase III promoter during mitotic cell cycle (obsolete GO:0046024)","synonyms":[{"name":"activation of transcription from RNA polymerase III promoter during mitosis","type":"narrow"},{"name":"mitotic activation of transcription from Pol III promoter","type":"exact"},{"name":"positive regulation of transcription from Pol III promoter during mitosis","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase III promoter, mitotic","type":"exact"},{"name":"stimulation of transcription from RNA polymerase III promoter during mitosis","type":"narrow"},{"name":"up regulation of transcription from RNA polymerase III promoter during mitosis","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase III promoter during mitosis","type":"exact"},{"name":"upregulation of transcription from RNA polymerase III promoter during mitosis","type":"exact"}],"termid":"GO:0046024"}


id: PBO:0031770
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id: GO:0070644
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id: GO:0061695
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transferase complex capable of catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).","definition_xrefs":["GOC:bhm","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":152,"genes_by_uniquename":{"SJAG_00095":null,"SJAG_00100":null,"SJAG_00114":null,"SJAG_00116":null,"SJAG_00119":null,"SJAG_00139":null,"SJAG_00142":null,"SJAG_00150":null,"SJAG_00153":null,"SJAG_00159":null,"SJAG_00421":null,"SJAG_00439":null,"SJAG_00458":null,"SJAG_00512":null,"SJAG_00584":null,"SJAG_00605":null,"SJAG_00611":null,"SJAG_00619":null,"SJAG_00637":null,"SJAG_00638":null,"SJAG_00731":null,"SJAG_00735":null,"SJAG_00741":null,"SJAG_00758":null,"SJAG_00814":null,"SJAG_00872":null,"SJAG_00901":null,"SJAG_00973":null,"SJAG_00995":null,"SJAG_01128":null,"SJAG_01149":null,"SJAG_01151":null,"SJAG_01207":null,"SJAG_01213":null,"SJAG_01236":null,"SJAG_01245":null,"SJAG_01274":null,"SJAG_01313":null,"SJAG_01401":null,"SJAG_01436":null,"SJAG_01444":null,"SJAG_01456":null,"SJAG_01475":null,"SJAG_01562":null,"SJAG_01581":null,"SJAG_01587":null,"SJAG_01610":null,"SJAG_01698":null,"SJAG_01710":null,"SJAG_01713":null,"SJAG_01716":null,"SJAG_01765":null,"SJAG_01799":null,"SJAG_01808":null,"SJAG_01823":null,"SJAG_01876":null,"SJAG_01948":null,"SJAG_02057":null,"SJAG_02070":null,"SJAG_02101":null,"SJAG_02172":null,"SJAG_02174":null,"SJAG_02183":null,"SJAG_02275":null,"SJAG_02289":null,"SJAG_02374":null,"SJAG_02404":null,"SJAG_02441":null,"SJAG_02458":null,"SJAG_02506":null,"SJAG_02541":null,"SJAG_02600":null,"SJAG_02627":null,"SJAG_02653":null,"SJAG_02658":null,"SJAG_02665":null,"SJAG_02667":null,"SJAG_02699":null,"SJAG_02725":null,"SJAG_02785":null,"SJAG_02818":null,"SJAG_02871":null,"SJAG_02908":null,"SJAG_03014":null,"SJAG_03035":null,"SJAG_03048":null,"SJAG_03061":null,"SJAG_03107":null,"SJAG_03118":null,"SJAG_03144":null,"SJAG_03160":null,"SJAG_03181":null,"SJAG_03193":null,"SJAG_03206":null,"SJAG_03285":null,"SJAG_03289":null,"SJAG_03356":null,"SJAG_03403":null,"SJAG_03421":null,"SJAG_03468":null,"SJAG_03501":null,"SJAG_03525":null,"SJAG_03578":null,"SJAG_03591":null,"SJAG_03602":null,"SJAG_03618":null,"SJAG_03695":null,"SJAG_03699":null,"SJAG_03761":null,"SJAG_03789":null,"SJAG_03802":null,"SJAG_03811":null,"SJAG_03900":null,"SJAG_03921":null,"SJAG_03931":null,"SJAG_03956":null,"SJAG_03967":null,"SJAG_04030":null,"SJAG_04106":null,"SJAG_04140":null,"SJAG_04161":null,"SJAG_04232":null,"SJAG_04261":null,"SJAG_04274":null,"SJAG_04280":null,"SJAG_04312":null,"SJAG_04368":null,"SJAG_04408":null,"SJAG_04420":null,"SJAG_04486":null,"SJAG_04502":null,"SJAG_04552":null,"SJAG_04559":null,"SJAG_04614":null,"SJAG_04654":null,"SJAG_04852":null,"SJAG_04860":null,"SJAG_04877":null,"SJAG_04879":null,"SJAG_04882":null,"SJAG_04894":null,"SJAG_04917":null,"SJAG_04933":null,"SJAG_04934":null,"SJAG_04970":null,"SJAG_04977":null,"SJAG_04994":null,"SJAG_05017":null,"SJAG_05197":null,"SJAG_05239":null,"SJAG_05978":null,"SJAG_05979":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"transferase complex, transferring phosphorus-containing groups","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0061695","terms_by_termid":{"GO:0000307":null,"GO:0000333":null,"GO:0002189":null,"GO:0005658":null,"GO:0005665":null,"GO:0005666":null,"GO:0005669":null,"GO:0005672":null,"GO:0005673":null,"GO:0005674":null,"GO:0005675":null,"GO:0005736":null,"GO:0005760":null,"GO:0005945":null,"GO:0005952":null,"GO:0005956":null,"GO:0008622":null,"GO:0009365":null,"GO:0016035":null,"GO:0016591":null,"GO:0016593":null,"GO:0019908":null,"GO:0031379":null,"GO:0031380":null,"GO:0031431":null,"GO:0031588":null,"GO:0034245":null,"GO:0034271":null,"GO:0034272":null,"GO:0043625":null,"GO:0070691":null,"GO:0070692":null,"GO:0070772":null,"GO:0070985":null,"GO:0090730":null,"GO:0110115":null,"GO:1990316":null}}


id: PBO:0065894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB40A, member RAS oncogene family","termid":"PBO:0065894"}


id: PBO:0065166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein interacting with cyclin A1","termid":"PBO:0065166"}


id: PBO:0001597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F0-ATPase subunit K (predicted)","termid":"PBO:0001597"}


id: PBO:0004153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionine aminopeptidase Fma1 (predicted)","termid":"PBO:0004153"}


id: PBO:0046571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 13","termid":"PBO:0046571"}


id: PBO:0084204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Homeobox-domain protein; with Mcm1p, represses a-specific genes in haploids; acts with A1p to repress transcription of haploid-specific genes in diploids; one of two genes encoded by the MATalpha mating type cassette","termid":"PBO:0084204"}


id: PBO:0068425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding protein with serine rich domain 1 pseudogene 1","termid":"PBO:0068425"}


id: PBO:0073069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndecan binding protein 2","termid":"PBO:0073069"}


id: PBO:0068825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 63, pseudogene","termid":"PBO:0068825"}


id: PBO:0081528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 438","termid":"PBO:0081528"}


id: GO:0072003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of a kidney rudiment from unspecified parts. A kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"kidney morphogenesis","termid":"GO:0060993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"kidney rudiment formation","synonyms":[{"name":"kidney anlage formation","type":"related"}],"termid":"GO:0072003"}


id: PR:O13652
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sfi1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13652"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein sfi1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC8D2.05c","synonyms":[{"name":"Spom972h-sfi1","type":"exact"},{"name":"suppressor of fermentation induced loss of stress resistance protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13652"}


id: GO:0015213
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of uridine, uracil riboside, from one side of a membrane to the other.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleoside transmembrane transporter activity","termid":"GO:0015214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"uridine transmembrane transporter activity","synonyms":[{"name":"uracil/uridine permease activity","type":"narrow"}],"termid":"GO:0015213"}


id: PBO:0028266
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_mitochondrial_RNA_level","termid":"PBO:0028266"}


id: PBO:0055218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2644","termid":"PBO:0055218"}


id: GO:0052805
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of imidazoles, five-membered organic heterocycle containing two nitrogen atoms at positions 1 and 3, or any of its derivatives; compounds containing an imidazole skeleton.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"imidazole-containing compound metabolic process","termid":"GO:0052803"},{"relation_name":"is_a","term_name":"organic cyclic compound catabolic process","termid":"GO:1901361"},{"relation_name":"is_a","term_name":"organonitrogen compound catabolic process","termid":"GO:1901565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"imidazole-containing compound catabolic process","synonyms":[{"name":"imidazole breakdown","type":"exact"},{"name":"imidazole catabolism","type":"exact"},{"name":"imidazole degradation","type":"exact"}],"termid":"GO:0052805"}


id: GO:0048555
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The nucleus of the generative cell, a cell contained within the pollen grain that will divide to produce two haploid sperm cells.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus","termid":"GO:0005634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634"],"is_obsolete":false,"name":"generative cell nucleus","synonyms":[{"name":"male germ cell nucleus","type":"broad"},{"name":"sperm cell nucleus","type":"broad"}],"termid":"GO:0048555"}


id: PBO:0084739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial intermembrane space protein; involved in phospholipid metabolism; forms complex with Mdm35p that transfers phosphatidylserine from outer membrane to inner membrane for phosphatidylethanolamine synthesis; null mutant has defects in mitochondrial morphology; similar to Ups1p, Ups3p and to human PRELI; UPS2 has a paralog, UPS3, that arose from the whole genome duplication","termid":"PBO:0084739"}


id: GO:0046105
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of thymidine, deoxyribosylthymine thymine 2-deoxyriboside, a deoxynucleoside very widely distributed but occurring almost entirely as phosphoric esters in deoxynucleotides and deoxyribonucleic acid, DNA.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thymidine metabolic process","termid":"GO:0046104"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside biosynthetic process","termid":"GO:0046126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"thymidine biosynthetic process","synonyms":[{"name":"deoxyribosylthymine biosynthesis","type":"exact"},{"name":"deoxyribosylthymine biosynthetic process","type":"exact"},{"name":"thymidine anabolism","type":"exact"},{"name":"thymidine biosynthesis","type":"exact"},{"name":"thymidine formation","type":"exact"},{"name":"thymidine synthesis","type":"exact"}],"termid":"GO:0046105"}


id: GO:0050992
data:
  {"annotated_genes":["SJAG_04307"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98004],"is_not":false,"summary":null,"term":"GO:0050992"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of dimethylallyl diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid biosynthetic process","termid":"GO:0008654"},{"relation_name":"is_a","term_name":"dimethylallyl diphosphate metabolic process","termid":"GO:0050993"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04307":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"dimethylallyl diphosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"DPP biosynthesis","type":"exact"},{"name":"DPP biosynthetic process","type":"exact"},{"name":"dimethylallyl diphosphate anabolism","type":"exact"},{"name":"dimethylallyl diphosphate biosynthesis","type":"exact"},{"name":"dimethylallyl diphosphate formation","type":"exact"},{"name":"dimethylallyl diphosphate synthesis","type":"exact"},{"name":"dimethylallyl pyrophosphate biosynthesis","type":"exact"},{"name":"dimethylallyl pyrophosphate biosynthetic process","type":"exact"}],"termid":"GO:0050992","terms_by_termid":{"GO:0050992":null}}


id: PBO:0060331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin IIIA","termid":"PBO:0060331"}


id: GO:0032279
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A type of synapse occurring between an axon and a dendritic spine or dendritic shaft. Asymmetric synapses, the most abundant synapse type in the central nervous system, involve axons that contain predominantly spherical vesicles and contain a thickened postsynaptic density. Most or all synapses of this type are excitatory.","definition_xrefs":["GOC:dgh","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron to neuron synapse","termid":"GO:0098984"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"asymmetric synapse","synonyms":[{"name":"Gray's type I synapse","type":"exact"}],"termid":"GO:0032279"}


id: PBO:0063311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polycomb group ring finger 5","termid":"PBO:0063311"}


id: FYPO:0004717
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to heterochromatin is abnormal during the meiotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during meiosis","termid":"FYPO:0003549"},{"relation_name":"is_a","term_name":"abnormal protein localization to heterochromatin","termid":"FYPO:0004718"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal protein localization to heterochromatin during meiosis","synonyms":[{"name":"abnormal protein localisation to heterochromatin during meiosis","type":"exact"},{"name":"abnormal protein localization to heterochromatin during meiotic nuclear division","type":"exact"}],"termid":"FYPO:0004717"}


id: FYPO:0000331
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone acetylation occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone acetylation during vegetative growth","termid":"FYPO:0000456"},{"relation_name":"is_a","term_name":"decreased protein acetylation during vegetative growth","termid":"FYPO:0002394"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0002274","FYPO:0002494"],"is_obsolete":false,"name":"decreased histone acetylation during vegetative growth","synonyms":[{"name":"decreased histone acetylation during mitotic cell cycle","type":"related"},{"name":"reduced histone acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0000331"}


id: FYPO:0002808
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of 6,7-dimethyl-8-ribityllumazine synthase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000654","FYPO:0001985","FYPO:0000707","FYPO:0000652"],"is_obsolete":false,"name":"abnormal 6,7-dimethyl-8-ribityllumazine synthase activity","termid":"FYPO:0002808"}


id: PBO:0066778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 76","termid":"PBO:0066778"}


id: PBO:0053150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lactate dehydrogenase A pseudogene 7","termid":"PBO:0053150"}


id: PBO:0110393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEFH pseudogene 1","termid":"PBO:0110393"}


id: PBO:0089819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GARP complex subunit Vps52","termid":"PBO:0089819"}


id: PBO:0036289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy associated ubiquitin-like protein modifier Atg12","termid":"PBO:0036289"}


id: PBO:0071856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 51","termid":"PBO:0071856"}


id: PBO:0008804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial Membrane Bound O-Acyl Transferase (MBOAT) family","termid":"PBO:0008804"}


id: PBO:0087497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of Elongator complex; binds to microtubules via conserved alkaline residues; has two seven-bladed WD40 &#946; propellers; Elongator complex is required for modification of wobble nucleosides in tRNA; target of Kluyveromyces lactis zymocin","termid":"PBO:0087497"}


id: PR:Q10171
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- uch1 gene.","definition_xrefs":["UniProtKB:Q10171","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin carboxyl-terminal hydrolase Uch1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC27F1.03c","synonyms":[{"name":"SPAC27F1.03c","type":"related"},{"name":"Spom972h-uch1","type":"exact"},{"name":"ubiquitin carboxyl-terminal hydrolase 1 (Schizosaccharomyces pombe 972h-)","type":"related"}],"termid":"PR:Q10171"}


id: PBO:0061429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor subfamily 1 group H member 2","termid":"PBO:0061429"}


id: PBO:0017912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetraspan protein implicated in mating Dni2 (predicted)","termid":"PBO:0017912"}


id: GO:0006986
data:
  {"annotated_genes":["SJAG_01516","SJAG_04567","SJAG_00403","SJAG_00530","SJAG_01768","SJAG_03815","SJAG_04118","SJAG_04283","SJAG_04471","SJAG_04103","SJAG_00564","SJAG_00790","SJAG_00226","SJAG_04262","SJAG_04435","SJAG_03482","SJAG_00681","SJAG_03841","SJAG_02601","SJAG_03611"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106139,106140,99057],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034620"},{"annotations":[113319,94844,109939,112143,89083,103304,85836,110198,105704,90631,112890,97360,110330,113473],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030968"},{"annotations":[89229,85685],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0036498"},{"annotations":[84526],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034514"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to topologically incorrect protein","termid":"GO:0035966"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00226":null,"SJAG_00403":null,"SJAG_00530":null,"SJAG_00564":null,"SJAG_00681":null,"SJAG_00790":null,"SJAG_01516":null,"SJAG_01768":null,"SJAG_02601":null,"SJAG_03482":null,"SJAG_03611":null,"SJAG_03815":null,"SJAG_03841":null,"SJAG_04103":null,"SJAG_04118":null,"SJAG_04262":null,"SJAG_04283":null,"SJAG_04435":null,"SJAG_04471":null,"SJAG_04567":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to unfolded protein","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"heat shock protein activity","type":"related"}],"termid":"GO:0006986","terms_by_termid":{"GO:0030968":null,"GO:0034514":null,"GO:0034620":null,"GO:0036498":null}}


id: PBO:0002975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human WW domain binding protein-2 ortholog","termid":"PBO:0002975"}


id: PATO:0000260
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000260 visual_acuity (obsolete PATO:0000260)","termid":"PATO:0000260"}


id: PBO:0069867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1154, pseudogene","termid":"PBO:0069867"}


id: PBO:0088936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"R3H and G-patch domain protein Sqs2","termid":"PBO:0088936"}


id: PBO:0062455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 128 pseudogene","termid":"PBO:0062455"}


id: GO:0036062
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A region that surrounds the active zone of the presynaptic plasma membrane, and is specialized for the control of synaptic development.","definition_xrefs":["PMID:10976048","GOC:sart","PMID:18439406"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synaptic membrane","termid":"GO:0097060"},{"relation_name":"part_of","term_name":"presynaptic membrane","termid":"GO:0042734"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"presynaptic periactive zone","synonyms":[{"name":"periactive zone","type":"exact"},{"name":"pre-synaptic periactive zone","type":"exact"}],"termid":"GO:0036062"}


id: PATO:0001322
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An angle which is 180 degrees to another entity.","definition_xrefs":["thesaurus.maths:thesaurus.maths"],"direct_ancestors":[{"relation_name":"is_a","term_name":"angle","termid":"PATO:0002326"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"straight angle to","termid":"PATO:0001322"}


id: FYPO:0000874
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromeric regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K9 dimethylation at centromere during vegetative growth","termid":"FYPO:0000867"},{"relation_name":"is_a","term_name":"increased histone H3-K9 dimethylation during vegetative growth","termid":"FYPO:0000873"},{"relation_name":"is_a","term_name":"increased histone H3-K9 methylation at centromere during vegetative growth","termid":"FYPO:0005066"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0002494","FYPO:0005447","FYPO:0002274","FYPO:0001985"],"is_obsolete":false,"name":"increased histone H3-K9 dimethylation at centromere during vegetative growth","synonyms":[{"name":"increased centromeric histone H3-K9 dimethylation during vegetative growth","type":"exact"},{"name":"increased histone H3 K9 dimethylation at centromere during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 dimethylation at centromere during mitotic cell cycle","type":"related"},{"name":"increased histone H3K9 dimethylation at centromere during vegetative growth","type":"exact"},{"name":"increased histone H3K9me2 at centromere during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 dimethylation at centromere during vegetative growth","type":"exact"}],"termid":"FYPO:0000874"}


id: PBO:0090859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial conserved protein Dpc13","termid":"PBO:0090859"}


id: PBO:0043758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 8B, pseudogene","termid":"PBO:0043758"}


id: PBO:0070655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 26","termid":"PBO:0070655"}


id: PBO:0066492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ret finger protein like 4A pseudogene 3","termid":"PBO:0066492"}


id: GO:0035878
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a nail over time, from its formation to the mature structure. A nail is a horn-like envelope covering the outer end of a finger or toe, and consists of the nail plate, the nail matrix and the nail bed below it, and the grooves surrounding it.","definition_xrefs":["ISBN:0323025781","GOC:bf","UBERON:0001705","Wikipedia:Nail_(anatomy)"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"limb development","termid":"GO:0060173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nail development","termid":"GO:0035878"}


id: GO:0072283
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the metanephric renal vesicle are generated and organized. The renal vesicle is the primordial structure of the metanephric nephron epithelium, and is formed by the condensation of mesenchymal cells.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal vesicle morphogenesis","termid":"GO:0072077"},{"relation_name":"part_of","term_name":"metanephric nephron morphogenesis","termid":"GO:0072273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric renal vesicle morphogenesis","termid":"GO:0072283"}


id: GO:0043952
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which unfolded proteins are transported across the cytoplasmic membrane in Gram-positive and Gram-negative bacteria by the Sec complex, in a process involving proteolytic cleavage of an N-terminal signal peptide.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein transmembrane transport","termid":"GO:0071806"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"protein transport by the Sec complex","synonyms":[{"name":"protein secretion by the Sec complex","type":"narrow"},{"name":"protein translocation by the Sec complex","type":"narrow"}],"termid":"GO:0043952"}


id: GO:0071811
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate or extent of fever generation via positive regulation of the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of prostaglandin.","definition_xrefs":["GOC:mah","GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of prostaglandin biosynthetic process","termid":"GO:0031394"},{"relation_name":"is_a","term_name":"positive regulation of fever generation","termid":"GO:0031622"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"positive regulation of fever generation by positive regulation of prostaglandin biosynthesis","termid":"GO:0071811"}


id: PBO:0083812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential RNA-binding G protein effector of mating response pathway; ligand-activated RNA-binding protein that delivers RNAs involved in polarization and perpetualizing mating signal to shmoo tip during pheromone signaling; Scp160p-mediated RNA trafficking essential for chemotropism and successful mating; mainly associated with nuclear envelope and ER, interacts in mRNA-dependent manner with translating ribosomes via multiple KH domains, similar to vertebrate vigilins","termid":"PBO:0083812"}


id: PATO:0001670
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A susceptibility toward an external stimulus which is lower than normal/average.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"susceptible toward","termid":"PATO:0001152"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased susceptibility toward","synonyms":[{"name":"decreased susceptibility","type":"exact"},{"name":"low susceptibility toward","type":"exact"}],"termid":"PATO:0001670"}


id: PBO:0087769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of tRNA-specific adenosine-34 deaminase; forms a heterodimer with Tad3p that converts adenosine to inosine at the wobble position of several tRNAs","termid":"PBO:0087769"}


id: GO:0035409
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by the addition of a phosphate group to a tyrosine residue at position 41 of the histone.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-Y41 phosphorylation (obsolete GO:0035409)","termid":"GO:0035409"}


id: GO:0005513
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a calcium ion stimulus is received by a cell and converted into a molecular signal.","definition_xrefs":["GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of chemical stimulus","termid":"GO:0009593"},{"relation_name":"is_a","term_name":"response to calcium ion","termid":"GO:0051592"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of calcium ion","synonyms":[{"name":"Ca2+ ion detection","type":"exact"},{"name":"calcium ion detection","type":"exact"},{"name":"calcium ion sensing","type":"exact"},{"name":"detection of Ca2+ ion","type":"exact"}],"termid":"GO:0005513"}


id: GO:0050543
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to icosatetraenoic acid, any straight-chain fatty acid with twenty carbon atoms and four double bonds per molecule.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long-chain fatty acid binding","termid":"GO:0036041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0008289","GO:0003674"],"is_obsolete":false,"name":"icosatetraenoic acid binding","synonyms":[{"name":"eicosatetraenoic acid binding","type":"exact"}],"termid":"GO:0050543"}


id: MOD:00391
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O-octanoyl-L-threonine.","definition_xrefs":["RESID:AA0386","PubMed:11546772","PubMed:12716131","Unimod:426#T"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-octanoylated residue","termid":"MOD:00669"},{"relation_name":"is_a","term_name":"O3-acylated L-threonine","termid":"MOD:02004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"O-octanoyl-L-threonine","synonyms":[{"name":"(2S)-2-amino-3-(octanoyloxy)butanoic acid","type":"exact"},{"name":"L-threonine octanoate ester","type":"exact"},{"name":"LIPID O-octanoyl threonine","type":"exact"},{"name":"O-octanoyl-L-threonine","type":"exact"},{"name":"O-octanoylated L-threonine","type":"exact"},{"name":"O3-octanoyl-L-threonine","type":"exact"},{"name":"OOctThr","type":"exact"},{"name":"Octanoyl","type":"related"},{"name":"octanoyl","type":"related"}],"termid":"MOD:00391"}


id: PBO:0045950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EGF like domain multiple 6","termid":"PBO:0045950"}


id: GO:0071427
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a ribonucleoprotein complex that contains messenger RNA from the nucleus to the cytoplasm.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete mRNA-containing ribonucleoprotein complex export from nucleus (obsolete GO:0071427)","synonyms":[{"name":"mRNA-containing RNP export from nucleus","type":"exact"},{"name":"mRNA-containing ribonucleoprotein complex export from cell nucleus","type":"exact"},{"name":"mRNA-containing ribonucleoprotein complex nucleus export","type":"exact"},{"name":"mRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm","type":"exact"}],"termid":"GO:0071427"}


id: GO:0007065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The joining of the sister chromatids of a replicated chromosome along the entire length of the chromosome that occurs during meiosis in a male.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic sister chromatid cohesion","termid":"GO:0051177"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"male meiosis sister chromatid cohesion","termid":"GO:0007065"}


id: GO:0090290
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of the multiplication or reproduction of osteoclasts, resulting in the expansion of an osteoclast cell population.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte proliferation","termid":"GO:0070665"},{"relation_name":"is_a","term_name":"regulation of osteoclast proliferation","termid":"GO:0090289"},{"relation_name":"positively_regulates","term_name":"osteoclast proliferation","termid":"GO:0002158"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of osteoclast proliferation","termid":"GO:0090290"}


id: GO:0000055
data:
  {"annotated_genes":["SJAG_03882","SJAG_01358","SJAG_00178","SJAG_00753","SJAG_04308","SJAG_03496","SJAG_01065","SJAG_01391","SJAG_03719"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85952,87236,95763,98001,99130,101866,112344,113759,114260],"is_not":false,"summary":null,"term":"GO:0000055"}]},"cv_name":"biological_process","definition":"The directed movement of a ribosomal large subunit from the nucleus into the cytoplasm.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribosomal subunit export from nucleus","termid":"GO:0000054"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00178":null,"SJAG_00753":null,"SJAG_01065":null,"SJAG_01358":null,"SJAG_01391":null,"SJAG_03496":null,"SJAG_03719":null,"SJAG_03882":null,"SJAG_04308":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0042254"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0042254","GO:0006810","GO:0008150","GO:0006913","GO:0044085"],"is_obsolete":false,"name":"ribosomal large subunit export from nucleus","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0000057"],"synonyms":[{"name":"50S ribosomal subunit export from nucleus","type":"narrow"},{"name":"60S ribosomal subunit export from nucleus","type":"narrow"},{"name":"ribosomal large subunit export from cell nucleus","type":"exact"},{"name":"ribosomal large subunit export out of nucleus","type":"exact"},{"name":"ribosomal large subunit transport from nucleus to cytoplasm","type":"exact"},{"name":"ribosomal large subunit-nucleus export","type":"exact"}],"termid":"GO:0000055","terms_by_termid":{"GO:0000055":null}}


id: GO:0102069
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 8-hydroxy-alpha-humulene + NAD = zerumbone + NADH + H+.","definition_xrefs":["EC:1.1.1.326","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"zerumbone synthase activity","secondary_identifiers":["RHEA:32327","MetaCyc:RXN-10629"],"termid":"GO:0102069"}


id: PBO:0042446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDC42 effector protein 4","termid":"PBO:0042446"}


id: GO:0035342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of inosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of purine nucleoside transport","termid":"GO:0032248"},{"relation_name":"is_a","term_name":"regulation of inosine transport","termid":"GO:0035341"},{"relation_name":"positively_regulates","term_name":"inosine transport","termid":"GO:0035340"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of inosine transport","synonyms":[{"name":"positive regulation of hypoxanthine riboside transport","type":"exact"}],"termid":"GO:0035342"}


id: PBO:0059412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S35 pseudogene 2","termid":"PBO:0059412"}


id: PBO:0034302
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_disposition","termid":"PBO:0034302"}


id: FYPO:0002297
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patches are localized throughout the cell cortex (rather than concentrated at the cell ends as in wild type cells) during interphase of the mitotic cell cycle.","definition_xrefs":["PMID:8834798","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dispersed actin cortical patch localization during vegetative growth","termid":"FYPO:0002021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0004803","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"dispersed actin cortical patch localization during mitotic interphase","synonyms":[{"name":"delocalised actin cortical patches during mitotic interphase","type":"exact"},{"name":"delocalized actin cortical patches during mitotic interphase","type":"exact"},{"name":"dispersed F-actin patch localization during mitotic interphase","type":"exact"},{"name":"dispersed actin cortical patch localisation during mitotic interphase","type":"exact"},{"name":"dispersed actin cortical patch localization during interphase of mitotic cell cycle","type":"related"},{"name":"dispersed actin cortical patch localization during mitotic interphase during vegetative growth","type":"exact"},{"name":"dispersed actin cortical patch location during mitotic interphase","type":"related"},{"name":"dispersed actin patch localization during mitotic interphase","type":"exact"}],"termid":"FYPO:0002297"}


id: PBO:0090487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-coA-sterol acyltransferase Are2","termid":"PBO:0090487"}


id: PBO:0070084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 41, pseudogene","termid":"PBO:0070084"}


id: PBO:0062046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily T member 33","termid":"PBO:0062046"}


id: PBO:0039686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amyloid beta precursor protein binding family B member 3","termid":"PBO:0039686"}


id: GO:0046882
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of follicle-stimulating hormone.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of gonadotropin secretion","termid":"GO:0032277"},{"relation_name":"is_a","term_name":"regulation of follicle-stimulating hormone secretion","termid":"GO:0046880"},{"relation_name":"negatively_regulates","term_name":"follicle-stimulating hormone secretion","termid":"GO:0046884"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0006810"],"is_obsolete":false,"name":"negative regulation of follicle-stimulating hormone secretion","synonyms":[{"name":"down regulation of follicle-stimulating hormone secretion","type":"exact"},{"name":"down-regulation of follicle-stimulating hormone secretion","type":"exact"},{"name":"downregulation of follicle-stimulating hormone secretion","type":"exact"},{"name":"inhibition of follicle-stimulating hormone secretion","type":"narrow"},{"name":"negative regulation of follicle stimulating hormone secretion","type":"exact"}],"termid":"GO:0046882"}


id: GO:0009502
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A series of membrane-linked oxidation-reduction reactions in which electrons are transferred from an initial electron donor through a series of intermediates to a final electron acceptor (usually oxygen).","definition_xrefs":["GOC:mtg_electron_transport","ISBN:0140514031"],"gene_count":0,"genotype_count":0,"name":"obsolete photosynthetic electron transport chain (obsolete GO:0009502)","synonyms":[{"name":"photosynthetic electron transport chain","type":"exact"}],"termid":"GO:0009502"}


id: PBO:0040027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo repeat containing X-linked 3","termid":"PBO:0040027"}


id: MOD:02060
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that contains an D-asparagine residue crosslinked to one or more amino acid residues.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-asparagine","termid":"MOD:00203"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crosslinked D-asparagine residue","synonyms":[{"name":"XlnkDAsn","type":"exact"}],"termid":"MOD:02060"}


id: FYPO:0002894
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription occurs to a lower extent than normal during a cellular response to calcium ions. All genes, or a specific subset of genes, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased transcription during vegetative growth","termid":"FYPO:0000781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000294","FYPO:0006551"],"is_obsolete":false,"name":"decreased transcription during cellular response to calcium ion","synonyms":[{"name":"decreased transcription during cellular response to calcium","type":"exact"},{"name":"decreased transcription during cellular response to calcium ion during mitotic cell cycle","type":"related"},{"name":"decreased transcription during cellular response to calcium ion during vegetative growth","type":"exact"},{"name":"decreased transcription in response to calcium","type":"exact"},{"name":"reduced transcription during cellular response to calcium ion","type":"exact"}],"termid":"FYPO:0002894"}


id: GO:0106425
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-dopa + O2 + H2O + H+ = 3,4-dihydroxyphenylacetaldehyde + CO2 + NH(4)+ + H2O2.","definition_xrefs":["PMID:21283636","RHEA:55524"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"3,4-dihydroxyphenylacetaldehyde synthase activity","secondary_identifiers":["EC:4.1.1.107"],"synonyms":[{"name":"DHPAA synthase","type":"exact"}],"termid":"GO:0106425"}


id: FYPO:0007606
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the breakdown of DNA occurs to a lower extent than normal when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA metabolism phenotype","termid":"FYPO:0000293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000293"],"is_obsolete":false,"name":"decreased DNA degradation during nitrogen starvation","synonyms":[{"name":"decreased DNA catabolic process during nitrogen starvation","type":"exact"},{"name":"decreased DNA catabolism during nitrogen starvation","type":"exact"},{"name":"decreased DNA degradation during nitrogen depletion","type":"exact"},{"name":"decreased DNA degradation during nitrogen deprivation","type":"exact"},{"name":"reduced DNA degradation during nitrogen starvation","type":"exact"}],"termid":"FYPO:0007606"}


id: GO:1902211
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of prolactin signaling pathway.","definition_xrefs":["GOC:TermGenie","PMID:11773439"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine-mediated signaling pathway","termid":"GO:0001959"},{"relation_name":"regulates","term_name":"prolactin signaling pathway","termid":"GO:0038161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of prolactin signaling pathway","synonyms":[{"name":"regulation of PRL signaling pathway","type":"exact"},{"name":"regulation of prolactin-mediated signaling pathway","type":"exact"}],"termid":"GO:1902211"}


id: PBO:0065185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PROSER2 antisense RNA 1","termid":"PBO:0065185"}


id: GO:1904673
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of somatic stem cell population maintenance.","definition_xrefs":["GOC:BHF","GOC:BHF_miRNA","GO_REF:0000058","GOC:TermGenie","PMID:19409607","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of stem cell population maintenance","termid":"GO:1902455"},{"relation_name":"is_a","term_name":"regulation of somatic stem cell population maintenance","termid":"GO:1904672"},{"relation_name":"negatively_regulates","term_name":"somatic stem cell population maintenance","termid":"GO:0035019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of somatic stem cell population maintenance","synonyms":[{"name":"down regulation of somatic stem cell population maintenance","type":"exact"},{"name":"down-regulation of somatic stem cell population maintenance","type":"exact"},{"name":"downregulation of somatic stem cell population maintenance","type":"exact"},{"name":"inhibition of somatic stem cell population maintenance","type":"narrow"}],"termid":"GO:1904673"}


id: PATO:0001020
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of whether the bearer has been harmed or injured or spoiled.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"damage","termid":"PATO:0001020"}


id: SO:0001813
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A polypeptide region that targets a polypeptide to the vacuole.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide_localization_signal","termid":"SO:0001527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"vacuolar_sorting_signal","synonyms":[{"name":"vacuolar sorting signal","type":"exact"}],"termid":"SO:0001813"}


id: PBO:0070248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 190 pseudogene","termid":"PBO:0070248"}


id: GO:0017118
data:
  {"annotated_genes":["SJAG_01164"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101356],"is_not":false,"summary":null,"term":"GO:0017118"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-lipoyl-5'-AMP + L-lysyl-[lipoyl-carrier protein] = (R)-N6-lipoyl-L-lysyl-[lipoyl-carrier protein] + AMP + 2 H+.","definition_xrefs":["RHEA:20473","PMID:10103005"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01164":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016746","GO:0016740"],"is_obsolete":false,"name":"lipoyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0017118","terms_by_termid":{"GO:0017118":null}}


id: GO:1900786
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of naphtho-gamma-pyrone.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ketone catabolic process","termid":"GO:0042182"},{"relation_name":"is_a","term_name":"naphtho-gamma-pyrone metabolic process","termid":"GO:1900785"},{"relation_name":"is_a","term_name":"organic cyclic compound catabolic process","termid":"GO:1901361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"naphtho-gamma-pyrone catabolic process","synonyms":[{"name":"naphtho-gamma-pyrone breakdown","type":"exact"},{"name":"naphtho-gamma-pyrone catabolism","type":"exact"},{"name":"naphtho-gamma-pyrone degradation","type":"exact"},{"name":"naphtho-gamma-pyrones breakdown","type":"related"},{"name":"naphtho-gamma-pyrones catabolic process","type":"related"},{"name":"naphtho-gamma-pyrones catabolism","type":"related"},{"name":"naphtho-gamma-pyrones degradation","type":"related"}],"termid":"GO:1900786"}


id: SO:0000121
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A single stranded oligo used for polymerase chain reaction.","direct_ancestors":[{"relation_name":"has_quality","term_name":"forward","termid":"SO:0001030"},{"relation_name":"is_a","term_name":"primer","termid":"SO:0000112"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forward_primer","synonyms":[{"name":"DNA forward primer","type":"exact"},{"name":"forward DNA primer","type":"exact"},{"name":"forward primer","type":"exact"},{"name":"forward primer oligo","type":"exact"},{"name":"forward primer oligonucleotide","type":"exact"},{"name":"forward primer polynucleotide","type":"exact"},{"name":"forward primer sequence","type":"exact"}],"termid":"SO:0000121"}


id: GO:1904099
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein O-linked glycosylation.","definition_xrefs":["PMID:24509081","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein glycosylation","termid":"GO:0060051"},{"relation_name":"is_a","term_name":"regulation of protein O-linked glycosylation","termid":"GO:1904098"},{"relation_name":"negatively_regulates","term_name":"protein O-linked glycosylation","termid":"GO:0006493"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006486"},{"rel_name":"negatively_regulates","termid":"GO:0006486"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006486"],"is_obsolete":false,"name":"negative regulation of protein O-linked glycosylation","synonyms":[{"name":"down regulation of protein O-linked glycosylation","type":"exact"},{"name":"down regulation of protein amino acid O-linked glycosylation","type":"exact"},{"name":"down-regulation of protein O-linked glycosylation","type":"exact"},{"name":"down-regulation of protein amino acid O-linked glycosylation","type":"exact"},{"name":"downregulation of protein O-linked glycosylation","type":"exact"},{"name":"downregulation of protein amino acid O-linked glycosylation","type":"exact"},{"name":"inhibition of protein O-linked glycosylation","type":"narrow"},{"name":"inhibition of protein amino acid O-linked glycosylation","type":"narrow"},{"name":"negative regulation of protein amino acid O-linked glycosylation","type":"exact"}],"termid":"GO:1904099"}


id: GO:0006771
data:
  {"annotated_genes":["SJAG_02491","SJAG_01054","SJAG_00480","SJAG_04711","SJAG_00491","SJAG_00376","SJAG_04845","SJAG_02360"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97269,111836,106510,83669,103105,102909,110891,113262],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009231"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD).","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"water-soluble vitamin metabolic process","termid":"GO:0006767"},{"relation_name":"is_a","term_name":"flavin-containing compound metabolic process","termid":"GO:0042726"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00376":null,"SJAG_00480":null,"SJAG_00491":null,"SJAG_01054":null,"SJAG_02360":null,"SJAG_02491":null,"SJAG_04711":null,"SJAG_04845":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0006766","GO:0044281"],"is_obsolete":false,"name":"riboflavin metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Riboflavin"],"synonyms":[{"name":"riboflavin metabolism","type":"exact"},{"name":"vitamin B2 metabolic process","type":"exact"},{"name":"vitamin B2 metabolism","type":"exact"},{"name":"vitamin G metabolic process","type":"exact"},{"name":"vitamin G metabolism","type":"exact"}],"termid":"GO:0006771","terms_by_termid":{"GO:0009231":null}}


id: GO:0004720
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: peptidyl-L-lysyl-peptide + H2O + O2 = peptidyl-allysyl-peptide + NH3 + hydrogen peroxide.","definition_xrefs":["EC:1.4.3.13"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor","termid":"GO:0016641"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0140096","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"protein-lysine 6-oxidase activity","secondary_identifiers":["Reactome:R-HSA-2002466","Reactome:R-HSA-2395340","MetaCyc:PROTEIN-LYSINE-6-OXIDASE-RXN","RHEA:24544","GO:0018056","Reactome:R-HSA-2129375"],"synonyms":[{"name":"lysyl oxidase activity","type":"related"},{"name":"protein-L-lysine:oxygen 6-oxidoreductase (deaminating)","type":"related"}],"termid":"GO:0004720"}


id: PBO:0030608
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_calcium_level","termid":"PBO:0030608"}


id: PBO:0058801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7843","termid":"PBO:0058801"}


id: PBO:0036504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-Not complex NOT box subunit Not2","termid":"PBO:0036504"}


id: GO:0031357
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the chloroplast inner membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of chloroplast inner membrane (obsolete GO:0031357)","synonyms":[{"name":"integral to chloroplast inner membrane","type":"narrow"}],"termid":"GO:0031357"}


id: PBO:0060797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit S5 pseudogene 3","termid":"PBO:0060797"}


id: PBO:0001538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aminotransferase class I and II (predicted)","termid":"PBO:0001538"}


id: GO:0004806
data:
  {"annotated_genes":["SJAG_02907","SJAG_02487","SJAG_02089","SJAG_02100","SJAG_01036"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86286,88041,90067,90181,110909],"is_not":false,"summary":null,"term":"GO:0004806"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a carboxylate.","definition_xrefs":["EC:3.1.1.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipase activity","termid":"GO:0016298"},{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01036":null,"SJAG_02089":null,"SJAG_02100":null,"SJAG_02487":null,"SJAG_02907":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016788","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"triglyceride lipase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-8848339","RHEA:12044","Reactome:R-HSA-1482777","Reactome:R-HSA-8848338","Reactome:R-HSA-163551","Reactome:R-HSA-5694109","MetaCyc:TRIACYLGLYCEROL-LIPASE-RXN"],"synonyms":[{"name":"GA 56","type":"related"},{"name":"GEH","type":"related"},{"name":"PPL","type":"related"},{"name":"TAG activity","type":"exact"},{"name":"amano AP","type":"related"},{"name":"amano B","type":"related"},{"name":"amano CE","type":"related"},{"name":"amano CES","type":"related"},{"name":"amano P","type":"related"},{"name":"amno N-AP","type":"related"},{"name":"butyrinase activity","type":"related"},{"name":"cacordase activity","type":"related"},{"name":"capalase L","type":"related"},{"name":"glycerol ester hydrolase activity","type":"related"},{"name":"glycerol-ester hydrolase activity","type":"related"},{"name":"heparin releasable hepatic lipase","type":"narrow"},{"name":"hepatic lipase","type":"narrow"},{"name":"hepatic monoacylglycerol acyltransferase","type":"narrow"},{"name":"lipazin","type":"related"},{"name":"liver lipase","type":"narrow"},{"name":"meito MY 30","type":"related"},{"name":"meito sangyo OF lipase","type":"related"},{"name":"post-heparin plasma protamine-resistant lipase","type":"narrow"},{"name":"salt-resistant post-heparin lipase","type":"narrow"},{"name":"steapsin","type":"related"},{"name":"takedo 1969-4-9","type":"related"},{"name":"triacetinase activity","type":"related"},{"name":"triacylglycerol acylhydrolase activity","type":"related"},{"name":"triacylglycerol ester hydrolase activity","type":"related"},{"name":"triacylglycerol lipase activity","type":"related"},{"name":"tributyrase activity","type":"related"},{"name":"tributyrin esterase activity","type":"related"},{"name":"tributyrinase activity","type":"related"},{"name":"triglyceridase activity","type":"related"},{"name":"triglyceride hydrolase activity","type":"related"},{"name":"triolein hydrolase activity","type":"related"},{"name":"tween hydrolase activity","type":"related"},{"name":"tween-hydrolyzing esterase activity","type":"related"},{"name":"tweenase activity","type":"related"},{"name":"tweenesterase activity","type":"related"}],"termid":"GO:0004806","terms_by_termid":{"GO:0004806":null}}


id: PBO:0045707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dysferlin","termid":"PBO:0045707"}


id: PBO:0039856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 22","termid":"PBO:0039856"}


id: PBO:0086833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function with similarity to helicases; located in the telomere region on the right arm of chromosome VIII","termid":"PBO:0086833"}


id: PBO:0034167
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-interaction_relation_helper_property","termid":"PBO:0034167"}


id: PBO:0083661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endoplasmic reticulum (ER) localized protein; involved in ER-associated protein degradation (ERAD), ER stress, and homeostasis; interacts with components of ERAD-L and ERAD-C and Cdc48p; derlin-like family member similar to Der1p","termid":"PBO:0083661"}


id: GO:0048681
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of axon regeneration.","definition_xrefs":["GOC:jid","GOC:dph","GOC:dgh","GOC:lm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of response to external stimulus","termid":"GO:0032102"},{"relation_name":"is_a","term_name":"regulation of axon regeneration","termid":"GO:0048679"},{"relation_name":"is_a","term_name":"negative regulation of neuron projection regeneration","termid":"GO:0070571"},{"relation_name":"is_a","term_name":"negative regulation of response to wounding","termid":"GO:1903035"},{"relation_name":"negatively_regulates","term_name":"axon regeneration","termid":"GO:0031103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of axon regeneration","synonyms":[{"name":"down regulation of axon regeneration","type":"exact"},{"name":"down-regulation of axon regeneration","type":"exact"},{"name":"downregulation of axon regeneration","type":"exact"},{"name":"inhibition of axon regeneration","type":"narrow"}],"termid":"GO:0048681"}


id: GO:0052336
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism effects a change in the structure or function of the symbiont cell wall. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete modification by host of symbiont cell wall (obsolete GO:0052336)","synonyms":[{"name":"metabolism of symbiont cell wall by organism","type":"exact"}],"termid":"GO:0052336"}


id: PBO:0088145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuolar transporter; exports large neutral amino acids from the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters","termid":"PBO:0088145"}


id: SO:0000918
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An edit to delete a uridine.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000918 delete_U (obsolete SO:0000918)","synonyms":[{"name":"delete U","type":"exact"}],"termid":"SO:0000918"}


id: PBO:0005828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron/ascorbate oxidoreductase family","termid":"PBO:0005828"}


id: PBO:0068163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 470","termid":"PBO:0068163"}


id: PBO:0070122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 36 pseudogene","termid":"PBO:0070122"}


id: GO:0015422
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + oligosaccharide(out) = ADP + phosphate + oligosaccharide(in).","definition_xrefs":["EC:7.5.2.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide transmembrane transporter activity","termid":"GO:0015157"},{"relation_name":"is_a","term_name":"ABC-type carbohydrate transporter activity","termid":"GO:0043211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"ABC-type oligosaccharide transporter activity","secondary_identifiers":["MetaCyc:3.6.3.18-RXN","GO:0015609"],"synonyms":[{"name":"ABC-type oligosaccharide transporter","type":"related"},{"name":"ATP-dependent oligosaccharide transmembrane transporter activity","type":"related"},{"name":"ATPase-coupled oligosaccharide transmembrane transporter activity","type":"related"},{"name":"oligosaccharide ABC transporter","type":"exact"},{"name":"oligosaccharide-transporting ATPase activity","type":"related"}],"termid":"GO:0015422"}


id: PR:Q9P6L7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rim2 gene.","definition_xrefs":["UniProtKB:Q9P6L7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized mitochondrial carrier C688.09 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC688.09","synonyms":[{"name":"Spom972h-rim2","type":"exact"}],"termid":"PR:Q9P6L7"}


id: GO:1901181
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to caffeine.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"negatively_regulates","term_name":"cellular response to caffeine","termid":"GO:0071313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cellular response to caffeine","synonyms":[{"name":"down regulation of cellular response to caffeine","type":"exact"},{"name":"down-regulation of cellular response to caffeine","type":"exact"},{"name":"downregulation of cellular response to caffeine","type":"exact"},{"name":"inhibition of cellular response to caffeine","type":"narrow"}],"termid":"GO:1901181"}


id: PBO:0078924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Arg (anticodon ACG) 1-3","termid":"PBO:0078924"}


id: PBO:0004686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C2 domain protein Git1","termid":"PBO:0004686"}


id: PBO:0063562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline, glutamate and leucine rich protein 1","termid":"PBO:0063562"}


id: PBO:0080515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WASP family member 2","termid":"PBO:0080515"}


id: PBO:0068655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 36, pseudogene","termid":"PBO:0068655"}


id: PBO:0056771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase like 21E, pseudogene","termid":"PBO:0056771"}


id: PBO:0068914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 157, pseudogene","termid":"PBO:0068914"}


id: GO:0070443
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A transcriptional repressor complex that consists of a heterodimer of the bHLH-ZIP proteins Mad and Max.","definition_xrefs":["PMID:8224841"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription repressor complex","termid":"GO:0090571"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Mad-Max complex","termid":"GO:0070443"}


id: PBO:0054081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1431","termid":"PBO:0054081"}


id: PBO:0005567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEDD8-conjugating enzyme Ubc12","termid":"PBO:0005567"}


id: PR:P54069
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An alpha/beta hydrolase domain-containing protein 13 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02874"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein bem46 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC32H8.03","secondary_identifiers":["UniProtKB:P54069"],"synonyms":[{"name":"Spom972h-ABHD13","type":"exact"}],"termid":"PR:P54069"}


id: PBO:0039983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 5B","termid":"PBO:0039983"}


id: PBO:0084207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Homeobox transcription factor; regulatory targets include genes involved in phosphate metabolism; binds cooperatively with Pho4p to the PHO5 promoter; phosphorylation of Pho2p facilitates interaction with Pho4p; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0084207"}


id: GO:0099151
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of postsynaptic density assembly, the aggregation, arrangement and bonding together of a set of components to form a postsynaptic density.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of postsynaptic specialization assembly","termid":"GO:0099150"},{"relation_name":"is_a","term_name":"regulation of excitatory synapse assembly","termid":"GO:1904889"},{"relation_name":"is_a","term_name":"regulation of postsynaptic density organization","termid":"GO:1905874"},{"relation_name":"regulates","term_name":"postsynaptic density assembly","termid":"GO:0097107"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"regulation of postsynaptic density assembly","termid":"GO:0099151"}


id: GO:0160105
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: adenosine(22) in tRNA + S-adenosyl-L-methionine = H+ + N(1)-methyladenosine(22) in tRNA + S-adenosyl-L-homocysteine.","definition_xrefs":["EC:2.1.1.217"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA (adenine) methyltransferase activity","termid":"GO:0016426"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016741","GO:0016740","GO:0140098","GO:0140101","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"tRNA (adenine(22)-N1)-methyltransferase activity","secondary_identifiers":["RHEA:43144"],"synonyms":[{"name":"tRNA (adenine(22)-N(1))-methyltransferase activity","type":"exact"},{"name":"tRNA (adenosine(22)-N(1))-methyltransferase activity","type":"exact"}],"termid":"GO:0160105"}


id: PBO:0002452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAK-related kinase Ppk11","termid":"PBO:0002452"}


id: PBO:0058867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 9900","termid":"PBO:0058867"}


id: FYPO:0002610
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H2A phosphorylation is normal at centromeric outer repeat regions. All histone H2A phosphorylation may be assayed, or phosphorylation of specific sites on histone H2A may be measured.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone H2A phosphorylation during vegetative growth","termid":"FYPO:0002601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal histone H2A phosphorylation at centromere outer repeat during vegetative growth","synonyms":[{"name":"abnormal histone H2A phosphorylation at centromere otr during vegetative growth","type":"exact"},{"name":"abnormal histone H2A phosphorylation at centromere outer repeat during vegetative growth","type":"exact"},{"name":"abnormal histone H2A phosphorylation at pericentric region during vegetative growth","type":"related"},{"name":"abnormal histone H2A phosphorylation at pericentromeric region during vegetative growth","type":"related"},{"name":"normal histone H2A phosphorylation at centromere outer repeat during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002610"}


id: FYPO:0005307
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of phospholipid binding by a gene product (usually a protein) in a mutant is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased lipid binding","termid":"FYPO:0007251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"decreased phospholipid binding","synonyms":[{"name":"reduced phospholipid binding","type":"exact"}],"termid":"FYPO:0005307"}


id: PBO:0050756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family E (Hsp10) member 1 pseudogene 18","termid":"PBO:0050756"}


id: PBO:0058420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4789","termid":"PBO:0058420"}


id: SO:0000609
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The string of non-encoded U's at the 3' end of a guide RNA (SO:0000602).","direct_ancestors":[{"relation_name":"adjacent_to","term_name":"guide_RNA","termid":"SO:0000602"},{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligo_U_tail","synonyms":[{"name":"oligo U tail","type":"exact"}],"termid":"SO:0000609"}


id: GO:0070311
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains eight subunits in common with the SWI/SNF complex, plus the ATPase BRG1 (SMARCA4) and the histone methyltransferase CARM1; the complex is involved in regulating nuclear receptor-dependent transcription.","definition_xrefs":["GOC:mah","PMID:14729568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone methyltransferase complex","termid":"GO:0035097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005654","GO:0005634"],"is_obsolete":false,"name":"nucleosomal methylation activator complex","synonyms":[{"name":"NUMAC","type":"exact"}],"termid":"GO:0070311"}


id: PBO:0049065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 82","termid":"PBO:0049065"}


id: FYPO:0004769
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-asparagine measured in the vacuole is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in vacuole","termid":"FYPO:0001730"},{"relation_name":"is_a","term_name":"increased cellular asparagine level","termid":"FYPO:0006953"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased vacuolar asparagine level","synonyms":[{"name":"increased level of asparagine in vacuole","type":"exact"},{"name":"increased vacuolar L-asparagine level","type":"exact"},{"name":"increased vacuolar asparagine level during mitotic cell cycle","type":"related"},{"name":"increased vacuolar asparagine level during vegetative growth","type":"exact"}],"termid":"FYPO:0004769"}


id: PBO:0043677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coronin 2A","termid":"PBO:0043677"}


id: PBO:0016936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"box H/ACA small nucleolar RNA snR101","termid":"PBO:0016936"}


id: PBO:0018188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial magnesium ion transmembrane transporter Mme1 (predicted)","termid":"PBO:0018188"}


id: PBO:0044951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"desert hedgehog signaling molecule","termid":"PBO:0044951"}


id: GO:0000993
data:
  {"annotated_genes":["SJAG_02691","SJAG_00448","SJAG_00483","SJAG_00139","SJAG_01610","SJAG_04353","SJAG_03118","SJAG_01151","SJAG_04933","SJAG_01707"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70046,71201,75168,77601,77620],"is_not":false,"summary":null,"term":"GO:0000993"},{"annotations":[64345],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0099122"},{"annotations":[76928,71520],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990269"},{"annotations":[77304,75442],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001139"}]},"cv_name":"molecular_function","definition":"Binding to an RNA polymerase II core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of twelve subunits.","definition_xrefs":["GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"basal RNA polymerase II transcription machinery binding","termid":"GO:0001099"},{"relation_name":"is_a","term_name":"RNA polymerase core enzyme binding","termid":"GO:0043175"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00139":null,"SJAG_00448":null,"SJAG_00483":null,"SJAG_01151":null,"SJAG_01610":null,"SJAG_01707":null,"SJAG_02691":null,"SJAG_03118":null,"SJAG_04353":null,"SJAG_04933":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"RNA polymerase II complex binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"synonyms":[{"name":"RNA polymerase II core binding","type":"exact"},{"name":"RNAP II core binding","type":"exact"}],"termid":"GO:0000993","terms_by_termid":{"GO:0000993":null,"GO:0001139":null,"GO:0099122":null,"GO:1990269":null}}


id: PR:O94398
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mrpl17 gene.","definition_xrefs":["UniProtKB:O94398","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"54S ribosomal protein L17, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC126.05c","synonyms":[{"name":"Spom972h-mrpl17","type":"exact"}],"termid":"PR:O94398"}


id: PBO:0084607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Merged open reading frame; does not encode a discrete protein; YPR090W was originally annotated as an independent ORF, but as a result of a sequence change, it was merged with an adjacent ORF into a single reading frame, designated YPR089W","termid":"PBO:0084607"}


id: GO:0006035
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cuticle chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues, found in cuticles.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chitin biosynthetic process","termid":"GO:0006031"},{"relation_name":"is_a","term_name":"cuticle chitin metabolic process","termid":"GO:0006034"},{"relation_name":"part_of","term_name":"chitin-based cuticle development","termid":"GO:0040003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cuticle chitin biosynthetic process","synonyms":[{"name":"cuticle chitin anabolism","type":"exact"},{"name":"cuticle chitin biosynthesis","type":"exact"},{"name":"cuticle chitin formation","type":"exact"},{"name":"cuticle chitin synthesis","type":"exact"}],"termid":"GO:0006035"}


id: PBO:0054334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1727","termid":"PBO:0054334"}


id: GO:0180018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways occurring in the cytoplasm and resulting in the breakdown of an RNA molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target rRNA truncated degradation intermediate.","definition_xrefs":["PMID:20368444"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyadenylation-dependent RNA catabolic process","termid":"GO:0043633"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cytoplasmic polyadenylation-dependent RNA catabolic process","termid":"GO:0180018"}


id: PBO:0109033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MESD pseudogene 1","termid":"PBO:0109033"}


id: PBO:0074547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNF8 subunit of ESCRT-II","termid":"PBO:0074547"}


id: PBO:0003899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enhancer of mRNA decapping Edc3 (predicted)","termid":"PBO:0003899"}


id: PBO:0087956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transmembrane nucleoporin; involved in nuclear pore complex (NPC) distribution, assembly or stabilization; highly conserved across species, orthologous to human TMEM33 and paralogous to Per33p; protein abundance increases in response to DNA replication stress","termid":"PBO:0087956"}


id: GO:0102368
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-amyrin + NADPH + H+ + O2 = 30-hydroxy-beta-amyrin + NADP + H2O.","definition_xrefs":["EC:1.14.13.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"beta-amyrin 30-monooxygenase activity","secondary_identifiers":["MetaCyc:RXN-13489"],"termid":"GO:0102368"}


id: FYPO:0007465
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein localizes to chromatin over a different spatial extent than normal. The protein may localize to a larger or smaller region than normal, or its localization may be shifted along the length of the chromosome.","definition_xrefs":["PMID:31615333","PomBase:mah","PMID:18957202"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to chromatin during vegetative growth","termid":"FYPO:0000452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000138","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"altered spatial extent of protein localization to chromatin","synonyms":[{"name":"abnormal spatial extent of protein localization to chromatin","type":"exact"},{"name":"altered spatial extent of protein localisation to chromatin","type":"exact"},{"name":"altered spatial extent of protein localization to chromatin during mitotic cell cycle","type":"related"},{"name":"altered spatial extent of protein localization to chromatin during vegetative growth","type":"exact"}],"termid":"FYPO:0007465"}


id: PBO:0060677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NDNF antisense RNA 1","termid":"PBO:0060677"}


id: FYPO:0002915
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which RNA splicing is abnormal. All RNA splicing may be abnormal, or one splicing of or more specific RNA molecules may be selectively affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal RNA metabolic process","termid":"FYPO:0004851"},{"relation_name":"is_a","term_name":"abnormal gene expression","termid":"FYPO:0006551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000294","FYPO:0006551"],"is_obsolete":false,"name":"abnormal RNA splicing","synonyms":[{"name":"abnormal RNA splicing during mitotic cell cycle","type":"related"},{"name":"abnormal RNA splicing during vegetative growth","type":"exact"},{"name":"abnormal RNA splicing, via transesterification reactions with bulged adenosine as nucleophile","type":"exact"}],"termid":"FYPO:0002915"}


id: PBO:0076054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stomatin","termid":"PBO:0076054"}


id: PBO:0048537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gem nuclear organelle associated protein 8 pseudogene 3","termid":"PBO:0048537"}


id: PBO:0053943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1246","termid":"PBO:0053943"}


id: GO:0032557
data:
  {"annotated_genes":["SJAG_02288","SJAG_03453","SJAG_02370"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[83937,87014],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002135"},{"annotations":[87020,87818],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002134"}]},"cv_name":"molecular_function","definition":"Binding to a pyrimidine ribonucleotide, any compound consisting of a pyrimidine ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleotide binding","termid":"GO:0019103"},{"relation_name":"is_a","term_name":"ribonucleotide binding","termid":"GO:0032553"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02288":null,"SJAG_02370":null,"SJAG_03453":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"pyrimidine ribonucleotide binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0032557","terms_by_termid":{"GO:0002134":null,"GO:0002135":null}}


id: GO:0009196
data:
  {"annotated_genes":["SJAG_04665","SJAG_02874","SJAG_04657","SJAG_00885"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88582,91629,103390],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006240"},{"annotations":[114098],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006233"},{"annotations":[114100],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006227"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving pyrimidine deoxynucleoside diphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with diphosphate on the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleoside diphosphate metabolic process","termid":"GO:0009138"},{"relation_name":"is_a","term_name":"deoxyribonucleoside diphosphate metabolic process","termid":"GO:0009186"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00885":null,"SJAG_02874":null,"SJAG_04657":null,"SJAG_04665":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"pyrimidine deoxyribonucleoside diphosphate metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pyrimidine deoxyribonucleoside diphosphate metabolism","type":"exact"}],"termid":"GO:0009196","terms_by_termid":{"GO:0006227":null,"GO:0006233":null,"GO:0006240":null}}


id: PBO:0071664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37a pseudogene 5","termid":"PBO:0071664"}


id: PBO:0003828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HECT-type ubiquitin-protein ligase Pub3 (predicted)","termid":"PBO:0003828"}


id: PR:O60066
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An alkylated DNA repair protein alkB homolog 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR16557:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-ketoglutarate-dependent dioxygenase abh1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC13G1.04c","secondary_identifiers":["UniProtKB:O60066"],"synonyms":[{"name":"SPBC13G1.04c","type":"related"},{"name":"Spom972h-ALKBH1","type":"exact"},{"name":"alkylated DNA repair protein alkB homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60066"}


id: GO:0002838
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of an immune response to tumor cell.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of response to tumor cell","termid":"GO:0002835"},{"relation_name":"is_a","term_name":"regulation of immune response to tumor cell","termid":"GO:0002837"},{"relation_name":"is_a","term_name":"negative regulation of immune response","termid":"GO:0050777"},{"relation_name":"negatively_regulates","term_name":"immune response to tumor cell","termid":"GO:0002418"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of immune response to tumor cell","synonyms":[{"name":"down regulation of immune response to tumor cell","type":"exact"},{"name":"down-regulation of immune response to tumor cell","type":"exact"},{"name":"downregulation of immune response to tumor cell","type":"exact"},{"name":"inhibition of immune response to tumor cell","type":"narrow"},{"name":"negative regulation of immune response to tumour cell","type":"exact"}],"termid":"GO:0002838"}


id: PR:O94408
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A U6 snRNA-associated Sm-like protein LSm2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR13829:SF2","OMA:SCHPO04961"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U6 snRNA-associated Sm-like protein LSm2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1620.01c","secondary_identifiers":["UniProtKB:O94408"],"synonyms":[{"name":"Spom972h-LSM2","type":"exact"}],"termid":"PR:O94408"}


id: PBO:0031356
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_drug_(obsolete_FYPO:0000074)","termid":"PBO:0031356"}


id: PBO:0071201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 42","termid":"PBO:0071201"}


id: PBO:0074781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 3 pseudogene 4","termid":"PBO:0074781"}


id: PBO:0076662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thromboxane A1 receptor","termid":"PBO:0076662"}


id: PBO:0063937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PIMREG pseudogene 2","termid":"PBO:0063937"}


id: PBO:0081884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 833, pseudogene","termid":"PBO:0081884"}


id: PBO:0085120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleolar protein; constituent of pre-60S ribosomal particles; required for proper processing of the 27S pre-rRNA at the A3 and B1 sites to yield mature 5.8S and 25S rRNAs","termid":"PBO:0085120"}


id: GO:1902939
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of intracellular calcium activated chloride channel activity.","definition_xrefs":["GOC:TermGenie","GOC:als","GO_REF:0000059","PMID:22946059"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of intracellular calcium activated chloride channel activity (obsolete GO:1902939)","synonyms":[{"name":"down regulation of intracellular calcium activated chloride channel activity","type":"exact"},{"name":"down-regulation of intracellular calcium activated chloride channel activity","type":"exact"},{"name":"downregulation of intracellular calcium activated chloride channel activity","type":"exact"},{"name":"inhibition of intracellular calcium activated chloride channel activity","type":"narrow"}],"termid":"GO:1902939"}


id: PBO:0001685
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"promoter contains DRE element","termid":"PBO:0001685"}


id: GO:0044631
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of complement activation by the lectin pathway, in a different organism.","definition_xrefs":["GOC:jl","PMID:20837040"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of complement activation, lectin pathway in another organism (obsolete GO:0044631)","synonyms":[{"name":"positive regulation of complement activation, lectin pathway in other organism","type":"exact"}],"termid":"GO:0044631"}


id: PBO:0089644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial carrier, magnesium ion Mme1","termid":"PBO:0089644"}


id: FYPO:0002305
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to non-ionic osmotic stress is lower than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during cellular response to osmotic stress","termid":"FYPO:0002286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0006551"],"is_obsolete":false,"name":"decreased RNA level during cellular response to non-ionic osmotic stress","synonyms":[{"name":"decreased RNA level during cellular response to non-ionic osmotic stress during mitotic cell cycle","type":"related"},{"name":"decreased RNA level during cellular response to non-ionic osmotic stress during vegetative growth","type":"exact"},{"name":"decreased mRNA level during cellular response to non-ionic osmotic stress","type":"narrow"},{"name":"decreased transcript level during cellular response to non-ionic osmotic stress","type":"exact"},{"name":"reduced RNA level during cellular response to non-ionic osmotic stress","type":"exact"}],"termid":"FYPO:0002305"}


id: GO:0047622
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: adenosine + H2O = D-ribose + adenine.","definition_xrefs":["MetaCyc:ADENOSINE-NUCLEOSIDASE-RXN","EC:3.2.2.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleosidase activity","termid":"GO:0008477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016798","GO:0016787"],"is_obsolete":false,"name":"adenosine nucleosidase activity","secondary_identifiers":["RHEA:18669"],"synonyms":[{"name":"ANase activity","type":"related"},{"name":"N-ribosyladenine ribohydrolase activity","type":"related"},{"name":"adenosinase activity","type":"related"},{"name":"adenosine hydrolase activity","type":"related"},{"name":"adenosine ribohydrolase activity","type":"related"}],"termid":"GO:0047622"}


id: PBO:0065455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, non-ATPase, 2 pseudogene 1","termid":"PBO:0065455"}


id: GO:0001833
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The proliferation of cells in the inner cell mass.","definition_xrefs":["GOC:dph","ISBN:0198542771","GOC:isa_complete","ISBN:0124020607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population proliferation","termid":"GO:0008283"},{"relation_name":"part_of","term_name":"blastocyst growth","termid":"GO:0001832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inner cell mass cell proliferation","termid":"GO:0001833"}


id: PBO:0067023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 36, pseudogene","termid":"PBO:0067023"}


id: GO:0042544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of melibiose, the disaccharide 6-O-alpha-D-galactopyranosyl-D-glucose.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"melibiose metabolic process","termid":"GO:0005994"},{"relation_name":"is_a","term_name":"disaccharide biosynthetic process","termid":"GO:0046351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"melibiose biosynthetic process","synonyms":[{"name":"melibiose anabolism","type":"exact"},{"name":"melibiose biosynthesis","type":"exact"},{"name":"melibiose formation","type":"exact"},{"name":"melibiose synthesis","type":"exact"}],"termid":"GO:0042544"}


id: GO:0031798
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 1 metabotropic glutamate receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled glutamate receptor binding","termid":"GO:0035256"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"type 1 metabotropic glutamate receptor binding","synonyms":[{"name":"type 1 metabotropic glutamate receptor ligand","type":"narrow"}],"termid":"GO:0031798"}


id: PBO:0069588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 862, pseudogene","termid":"PBO:0069588"}


id: PBO:0005035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMR domain protein, possibly involved in DNA repair","termid":"PBO:0005035"}


id: PBO:0041249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 1 open reading frame 159","termid":"PBO:0041249"}


id: GO:0007106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete cytokinesis, protein recruitment (obsolete GO:0007106)","synonyms":[{"name":"cytokinesis, protein recruitment","type":"exact"}],"termid":"GO:0007106"}


id: MOD:01210
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamic acid residue to the copper(1+) glutamate salt.","definition_xrefs":["Unimod:531#E"],"direct_ancestors":[{"relation_name":"is_a","term_name":"copper containing modified residue","termid":"MOD:00742"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-glutamic acid residue","termid":"MOD:02068"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copper(1+) L-glutamate","synonyms":[{"name":"Cation:Cu[I]","type":"related"},{"name":"Replacement of proton by copper","type":"related"},{"name":"cuprous salt","type":"exact"}],"termid":"MOD:01210"}


id: PBO:0055423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2853","termid":"PBO:0055423"}


id: PBO:0079703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBOX5 antisense RNA 1","termid":"PBO:0079703"}


id: GO:0005984
data:
  {"annotated_genes":["SJAG_01427","SJAG_02949","SJAG_01862","SJAG_01646","SJAG_01209","SJAG_04301","SJAG_00129","SJAG_04859","SJAG_02131","SJAG_01531","SJAG_03824","SJAG_00182"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97721,97720],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000025"},{"annotations":[96474],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005995"},{"annotations":[112239],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005987"},{"annotations":[105035,87992,93284,89481,92662,73411,97182],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005992"},{"annotations":[107636],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005993"},{"annotations":[87994,87993,92663,107637],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005991"},{"annotations":[73410,97183,107638,87995,89482,93285,92664],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070413"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving any disaccharide, sugars composed of two monosaccharide units.","definition_xrefs":["ISBN:0192800981","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide metabolic process","termid":"GO:0009311"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00129":null,"SJAG_00182":null,"SJAG_01209":null,"SJAG_01427":null,"SJAG_01531":null,"SJAG_01646":null,"SJAG_01862":null,"SJAG_02131":null,"SJAG_02949":null,"SJAG_03824":null,"SJAG_04301":null,"SJAG_04859":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"disaccharide metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"disaccharide metabolism","type":"exact"}],"termid":"GO:0005984","terms_by_termid":{"GO:0000025":null,"GO:0005987":null,"GO:0005991":null,"GO:0005992":null,"GO:0005993":null,"GO:0005995":null,"GO:0070413":null}}


id: GO:0047525
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2'-hydroxydihydrodaidzein + NADP+ = 2'-hydroxydaidzein + NADPH + H+.","definition_xrefs":["EC:1.3.1.51","MetaCyc:2'-HYDROXYDAIDZEIN-REDUCTASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"2'-hydroxydaidzein reductase activity","secondary_identifiers":["MetaCyc:RXN-4502","RHEA:17145"],"synonyms":[{"name":"2'-hydroxy-2,3-dihydrodaidzein:NADP+ 2'-oxidoreductase activity","type":"related"},{"name":"2'-hydroxydihydrodaidzein:NADP(+) 2'-oxidoreductase activity","type":"related"},{"name":"2'-hydroxydihydrodaidzein:NADP+ 2'-oxidoreductase activity","type":"related"},{"name":"HDR activity","type":"related"},{"name":"NADPH:2'-hydroxydaidzein oxidoreductase activity","type":"related"}],"termid":"GO:0047525"}


id: PR:Q92366
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 60S ribosomal protein L29 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12884:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L29 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC776.01","secondary_identifiers":["UniProtKB:Q92366"],"synonyms":[{"name":"L43 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPBC776.01","type":"related"},{"name":"Spom972h-RPL29","type":"exact"}],"termid":"PR:Q92366"}


id: SO:0002163
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A short tandem repeat variant containing fewer repeat units than the reference sequence.","direct_ancestors":[{"relation_name":"is_a","term_name":"short_tandem_repeat_change","termid":"SO:0002161"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short_tandem_repeat_contraction","synonyms":[{"name":"short tandem repeat contraction","type":"exact"},{"name":"str contraction","type":"exact"}],"termid":"SO:0002163"}


id: FYPO:0004169
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell is lower than normal when the population in which the cell is found is in stationary phase. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level","termid":"FYPO:0000826"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0006551","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased RNA level in stationary phase","synonyms":[{"name":"decreased RNA accumulation in stationary phase","type":"related"},{"name":"decreased transcript level in stationary phase","type":"exact"},{"name":"reduced RNA level in stationary phase","type":"exact"}],"termid":"FYPO:0004169"}


id: PBO:0059818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 44","termid":"PBO:0059818"}


id: PBO:0041937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CBX3 pseudogene 5","termid":"PBO:0041937"}


id: GO:0050394
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + viomycin = ADP + O-phosphoviomycin.","definition_xrefs":["EC:2.7.1.103","MetaCyc:VIOMYCIN-KINASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016301","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"viomycin kinase activity","secondary_identifiers":["RHEA:20509"],"synonyms":[{"name":"ATP:viomycin O-phosphotransferase activity","type":"related"},{"name":"capreomycin phosphotransferase activity","type":"related"},{"name":"viomycin phosphotransferase activity","type":"related"}],"termid":"GO:0050394"}


id: GO:1905708
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the location, frequency, rate or extent of cell morphogenesis involved in conjugation with cellular fusion.","definition_xrefs":["GOC:TermGenie","PMID:23200991","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell morphogenesis","termid":"GO:0022604"},{"relation_name":"regulates","term_name":"cell morphogenesis involved in conjugation with cellular fusion","termid":"GO:0000753"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell morphogenesis involved in conjugation with cellular fusion","synonyms":[{"name":"regulation of shmoo orientation","type":"narrow"},{"name":"regulation of shmooing","type":"narrow"}],"termid":"GO:1905708"}


id: PBO:0077801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"torsin family 4 member A","termid":"PBO:0077801"}


id: PBO:0017095
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Extender of Chronological Lifespan","termid":"PBO:0017095"}


id: GO:0060058
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process of mammary epithelial cells during mammary gland involution.","definition_xrefs":["PMID:15282149","GOC:dph","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of apoptotic process involved in morphogenesis","termid":"GO:1902339"},{"relation_name":"positively_regulates","term_name":"apoptotic process involved in mammary gland involution","termid":"GO:0060057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of apoptotic process involved in mammary gland involution","synonyms":[{"name":"positive regulation of apoptosis involved in mammary gland involution","type":"narrow"}],"termid":"GO:0060058"}


id: FYPO:0000950
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell does not contain a septum and is elongated.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"aseptate","termid":"FYPO:0000949"},{"relation_name":"has_part","term_name":"elongated vegetative cell","termid":"FYPO:0001122"},{"relation_name":"is_a","term_name":"aseptate","termid":"FYPO:0000949"},{"relation_name":"is_a","term_name":"elongated vegetative cell","termid":"FYPO:0001122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0001320","FYPO:0005447","FYPO:0000631","FYPO:0000032","FYPO:0000002"],"is_obsolete":false,"name":"elongated aseptate vegetative cell","synonyms":[{"name":"elongated aseptate cell during mitotic cell cycle","type":"related"},{"name":"elongated aseptate cell during vegetative growth","type":"exact"}],"termid":"FYPO:0000950"}


id: PBO:0027714
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_single_cell_division,_small_cell","termid":"PBO:0027714"}


id: GO:1902521
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an etoposide stimulus.","definition_xrefs":["GOC:TermGenie","GOC:dw","PMID:23648065"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organic cyclic compound","termid":"GO:0014070"},{"relation_name":"is_a","term_name":"response to glucoside","termid":"GO:1904631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to etoposide","termid":"GO:1902521"}


id: PBO:0091322
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein substrate KM, thiamine KM 6 uM","termid":"PBO:0091322"}


id: PBO:0057941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3666","termid":"PBO:0057941"}


id: PATO:0001710
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"size","termid":"PATO:0000117"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-D extent","synonyms":[{"name":"3D size","type":"exact"}],"termid":"PATO:0001710"}


id: GO:0032904
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of production of nerve growth factor (NGF).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of neurotrophin production","termid":"GO:0032900"},{"relation_name":"is_a","term_name":"regulation of nerve growth factor production","termid":"GO:0032903"},{"relation_name":"negatively_regulates","term_name":"nerve growth factor production","termid":"GO:0032902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of nerve growth factor production","synonyms":[{"name":"down regulation of nerve growth factor production","type":"exact"},{"name":"down-regulation of nerve growth factor production","type":"exact"},{"name":"downregulation of nerve growth factor production","type":"exact"},{"name":"inhibition of nerve growth factor production","type":"narrow"},{"name":"negative regulation of NGF production","type":"exact"}],"termid":"GO:0032904"}


id: GO:0032869
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms.","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to insulin","termid":"GO:0032868"},{"relation_name":"is_a","term_name":"cellular response to peptide hormone stimulus","termid":"GO:0071375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to insulin stimulus","termid":"GO:0032869"}


id: GO:0044277
data:
  {"annotated_genes":["SJAG_00667","SJAG_01888","SJAG_01017","SJAG_03013","SJAG_02718","SJAG_03646","SJAG_03444","SJAG_05001","SJAG_00620","SJAG_01171"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87912,97636],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034232"},{"annotations":[98075,107442,85273,84476,96267,90166,104203,98074],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904541"}]},"cv_name":"biological_process","definition":"A process that results in the breakdown of the cell wall.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component disassembly","termid":"GO:0022411"},{"relation_name":"is_a","term_name":"cell wall organization","termid":"GO:0071555"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00620":null,"SJAG_00667":null,"SJAG_01017":null,"SJAG_01171":null,"SJAG_01888":null,"SJAG_02718":null,"SJAG_03013":null,"SJAG_03444":null,"SJAG_03646":null,"SJAG_05001":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0071554","GO:0008150"],"is_obsolete":false,"name":"cell wall disassembly","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0060871"],"synonyms":[{"name":"cellular cell wall disassembly","type":"exact"}],"termid":"GO:0044277","terms_by_termid":{"GO:0034232":null,"GO:1904541":null}}


