# terms

id: PBO:0084672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial AMPylator in the pseudokinase selenoprotein-O family; role in the oxidative stress response, transferring AMP from ATP to protein substrates (AMPylation) involved in redox homeostasis; regulates S-glutathionylation levels; proposed involvement in the environmental stress response","termid":"PBO:0084672"}


id: SO:1001271
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An intron characteristic of Archaeal tRNA and rRNA genes, where intron transcript generates a bulge-helix-bulge motif that is recognised by a splicing endoribonuclease.","definition_xrefs":["PMID:9301331","SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endonuclease_spliced_intron","termid":"SO:0001216"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"archaeal_intron","synonyms":[{"name":"archaeal intron","type":"exact"}],"termid":"SO:1001271"}


id: GO:0044365
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with a resultant change to the frequency, rate or extent of platelet aggregation in the bitten organism.","definition_xrefs":["GOC:fj","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation resulting in modulation of blood coagulation in another organism","termid":"GO:0044468"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in modulation of platelet aggregation in another organism","synonyms":[{"name":"envenomation resulting in modulation of platelet aggregation in other organism","type":"exact"},{"name":"envenomation resulting in regulation of platelet aggregation in other organism","type":"exact"}],"termid":"GO:0044365"}


id: PBO:0063248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin alpha 13","termid":"PBO:0063248"}


id: FYPO:0004122
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cut phenotype that is observed when a cell is exposed to thiabendazole. In a cut phenotype, a cell undergoes septation despite abnormal chromosome segregation.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete cut during cellular response to thiabendazole (obsolete FYPO:0004122)","synonyms":[{"name":"cut during cellular response to TBZ","type":"exact"},{"name":"cut during cellular response to thiabendazole during mitotic cell cycle","type":"related"},{"name":"cut during cellular response to thiabendazole during vegetative growth","type":"exact"},{"name":"septation following abnormal mitotic chromosome segregation during cellular response to thiabendazole","type":"exact"}],"termid":"FYPO:0004122"}


id: GO:0000248
data:
  {"annotated_genes":["SJAG_00717","SJAG_03509"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[85831,103664],"is_not":false,"summary":null,"term":"GO:0000248"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 5,7,24(28)-ergostatrienol + O2 + NADPH = 5,7,22,24(28)-ergostatetraenol + 2 H2O + NADP+.","definition_xrefs":["MetaCyc:RXN3O-227"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"},{"relation_name":"is_a","term_name":"sterol desaturase activity","termid":"GO:0070704"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00717":null,"SJAG_03509":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"C-5 sterol desaturase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-195664","Reactome:R-HSA-6807053"],"synonyms":[{"name":"sterol-C5-desaturase activity","type":"exact"}],"termid":"GO:0000248","terms_by_termid":{"GO:0000248":null}}


id: PBO:0084174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hippo-like kinase of the Mitotic Exit Network; promotes exit by activating the Dbf2p kinase; component of a non-canonical Hippo pathway with Sps1p required for prospore membrane closure, spindle disassembly and sustained release of Cdc14p during meiotic anaphase II; complexes with Sps1p and contributes to its phosphorylation; phosphorylates the RNAPII CTD during mitosis; localizes to the bud neck and SPB during anaphase and telophase; relocalizes to the cytoplasm upon DNA replication stress","termid":"PBO:0084174"}


id: _global:is_bearer_of
data:
  {"annotation_feature_type":"gene","cv_name":"fypo_extension_relations","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_bearer_of","secondary_identifiers":["BFO:0000053"],"synonyms":[{"name":"has_color","type":"narrow"}],"termid":"_global:is_bearer_of"}


id: GO:0005427
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a oligopeptide from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by proton movement.","definition_xrefs":["GOC:mtg_transport","OMIM:600544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary active oligopeptide transmembrane transporter activity","termid":"GO:0015322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"proton-dependent oligopeptide secondary active transmembrane transporter activity","synonyms":[{"name":"hydrogen/oligopeptide symporter","type":"related"},{"name":"proton-dependent oligopeptide transporter activity","type":"exact"}],"termid":"GO:0005427"}


id: GO:0072171
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a mesonephric tubule are generated and organized. A mesonephric tubule is an epithelial tube that is part of the mesonephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron tubule morphogenesis","termid":"GO:0072078"},{"relation_name":"part_of","term_name":"mesonephric tubule development","termid":"GO:0072164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric tubule morphogenesis","termid":"GO:0072171"}


id: PBO:0033832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 kinase Psk1","termid":"PBO:0033832"}


id: PBO:0000885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial 2' O-ribose methyltransferase Mrm2-like (predicted)","termid":"PBO:0000885"}


id: PBO:0077943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon AGC) 3-1","termid":"PBO:0077943"}


id: GO:1903197
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of L-dopa biosynthetic process.","definition_xrefs":["GO_REF:0000058","GOC:PARL","GOC:TermGenie","PMID:16731528","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular biosynthetic process","termid":"GO:0031328"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of L-dopa biosynthetic process","termid":"GO:1903195"},{"relation_name":"is_a","term_name":"positive regulation of amino acid biosynthetic process","termid":"GO:2000284"},{"relation_name":"positively_regulates","term_name":"L-dopa biosynthetic process","termid":"GO:1903185"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"positive regulation of L-dopa biosynthetic process","synonyms":[{"name":"activation of L-dopa anabolism","type":"narrow"},{"name":"activation of L-dopa biosynthesis","type":"narrow"},{"name":"activation of L-dopa biosynthetic process","type":"narrow"},{"name":"activation of L-dopa formation","type":"narrow"},{"name":"activation of L-dopa synthesis","type":"narrow"},{"name":"positive regulation of L-dopa anabolism","type":"exact"},{"name":"positive regulation of L-dopa biosynthesis","type":"exact"},{"name":"positive regulation of L-dopa formation","type":"exact"},{"name":"positive regulation of L-dopa synthesis","type":"exact"},{"name":"up regulation of L-dopa anabolism","type":"exact"},{"name":"up regulation of L-dopa biosynthesis","type":"exact"},{"name":"up regulation of L-dopa biosynthetic process","type":"exact"},{"name":"up regulation of L-dopa formation","type":"exact"},{"name":"up regulation of L-dopa synthesis","type":"exact"},{"name":"up-regulation of L-dopa anabolism","type":"exact"},{"name":"up-regulation of L-dopa biosynthesis","type":"exact"},{"name":"up-regulation of L-dopa biosynthetic process","type":"exact"},{"name":"up-regulation of L-dopa formation","type":"exact"},{"name":"up-regulation of L-dopa synthesis","type":"exact"},{"name":"upregulation of L-dopa anabolism","type":"exact"},{"name":"upregulation of L-dopa biosynthesis","type":"exact"},{"name":"upregulation of L-dopa biosynthetic process","type":"exact"},{"name":"upregulation of L-dopa formation","type":"exact"},{"name":"upregulation of L-dopa synthesis","type":"exact"}],"termid":"GO:1903197"}


id: GO:0140075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that controls lipoprotein transport.","definition_xrefs":["GOC:BHF","GOC:RPH","PMID:26501192","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein transport","termid":"GO:0051223"},{"relation_name":"regulates","term_name":"lipoprotein transport","termid":"GO:0042953"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of lipoprotein transport","termid":"GO:0140075"}


id: PBO:0056005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 4","termid":"PBO:0056005"}


id: PBO:0072268
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S21 pseudogene 6","termid":"PBO:0072268"}


id: GO:0001976
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulation of blood pressure mediated by detection of stimuli and a neurological response.","definition_xrefs":["GOC:mtg_cardio","ISBN:0721643949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system process","termid":"GO:0050877"},{"relation_name":"part_of","term_name":"regulation of systemic arterial blood pressure","termid":"GO:0003073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nervous system process involved in regulation of systemic arterial blood pressure","synonyms":[{"name":"blood pressure regulation by neurological process","type":"exact"},{"name":"fast control of arterial pressure","type":"related"},{"name":"neurological process involved in regulation of systemic arterial blood pressure","type":"exact"},{"name":"neurological system process involved in regulation of systemic arterial blood pressure","type":"exact"}],"termid":"GO:0001976"}


id: GO:0043620
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Modulation of the frequency, rate or extent of transcription from a DNA template as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).","definition_xrefs":["GOC:jl","GOC:txnOH"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of DNA-templated transcription in response to stress (obsolete GO:0043620)","synonyms":[{"name":"regulation of DNA-dependent transcription in response to stress","type":"exact"}],"termid":"GO:0043620"}


id: PBO:0050682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family A (Hsp70) member 8 pseudogene 9","termid":"PBO:0050682"}


id: PBO:0062160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily K member 1","termid":"PBO:0062160"}


id: GO:0052915
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + guanosine(2445) in 23S rRNA = N(2)-methylguanosine(2445) in 23S rRNA + S-adenosyl-L-homocysteine.","definition_xrefs":["EC:2.1.1.173"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA (guanine-N2-)-methyltransferase activity","termid":"GO:0008990"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016741","GO:0003824","GO:0140098","GO:0016740"],"is_obsolete":false,"name":"23S rRNA (guanine(2445)-N(2))-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-11574","RHEA:42740","KEGG_REACTION:R07234"],"termid":"GO:0052915"}


id: PR:P41891
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gar2 gene.","definition_xrefs":["UniProtKB:P41891","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein gar2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC140.02","synonyms":[{"name":"Spom972h-gar2","type":"exact"}],"termid":"PR:P41891"}


id: GO:0006305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The addition of alkyl groups to many positions on all four bases of DNA. Alkylating agents can also modify the bases of incoming nucleotides in the course of DNA synthesis.","definition_xrefs":["ISBN:0716735970"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA alkylation (obsolete GO:0006305)","termid":"GO:0006305"}


id: PBO:0080425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS51 pseudogene 9","termid":"PBO:0080425"}


id: PBO:0049050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 45","termid":"PBO:0049050"}


id: PBO:0028620
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_ribonucleoprotein_complex_binding","termid":"PBO:0028620"}


id: PBO:0072065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S11 pseudogene 3","termid":"PBO:0072065"}


id: PBO:0059769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 43","termid":"PBO:0059769"}


id: PBO:0040266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atlastin GTPase 1","termid":"PBO:0040266"}


id: GO:0016855
data:
  {"annotated_genes":["SJAG_00036","SJAG_04298"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[88608,113454],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036361"}]},"cv_name":"molecular_function","definition":"Catalysis of a reaction that alters the configuration of one or more chiral centers in an amino acid.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity","termid":"GO:0016854"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00036":null,"SJAG_04298":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"racemase and epimerase activity, acting on amino acids and derivatives","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:5.1.1.-"],"termid":"GO:0016855","terms_by_termid":{"GO:0036361":null}}


id: PBO:0072245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S20 pseudogene 20","termid":"PBO:0072245"}


id: PATO:0001957
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A variability of size which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"variability of size","termid":"PATO:0001956"},{"relation_name":"is_a","term_name":"decreased process quality","termid":"PATO:0002302"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased variability of size","synonyms":[{"name":"low variability of size","type":"exact"}],"termid":"PATO:0001957"}


id: GO:0031840
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 2 neuromedin U receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuromedin U receptor binding","termid":"GO:0042922"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"type 2 neuromedin U receptor binding","synonyms":[{"name":"type 2 neuromedin U receptor ligand","type":"narrow"}],"termid":"GO:0031840"}


id: PBO:0039764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alu-mediated CDKN1A/p21 transcriptional regulator","termid":"PBO:0039764"}


id: PBO:0044649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynactin subunit 1","termid":"PBO:0044649"}


id: FYPO:0000136
data:
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id: FYPO:0004321
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of DNA measured in a cell differs from normal when the cell is in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell during vegetative growth","termid":"FYPO:0001323"},{"relation_name":"is_a","term_name":"altered DNA level","termid":"FYPO:0004320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"altered DNA level during vegetative growth","synonyms":[{"name":"abnormal DNA content during vegetative growth","type":"exact"},{"name":"abnormal DNA level during vegetative growth","type":"exact"},{"name":"altered DNA content during vegetative growth","type":"exact"},{"name":"altered DNA level during mitotic cell cycle","type":"related"},{"name":"altered cellular DNA level during vegetative growth","type":"exact"}],"termid":"FYPO:0004321"}


id: PBO:0070041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1338, pseudogene","termid":"PBO:0070041"}


id: PBO:0087557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of SEACAT, a subcomplex of the SEA complex; Rtc1p, along with Mtc5p and Sea4p, redundantly inhibit the TORC1 inhibitory role of the Iml1p/SEACIT (Iml1p-Npr2p-Npr3p) subcomplex, a GAP for GTPase Gtr1p (EGOC subunit) in response to amino acid limitation, thereby resulting in activation of TORC1 signaling; SEA is a coatomer-related complex that associates dynamically with the vacuole; has N-terminal WD-40 repeats and a C-terminal RING motif; null suppresses cdc13-1","termid":"PBO:0087557"}


id: MOD:01561
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a serine residue with the Applied Biosystems iTRAQ8plex-117 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iTRAQ8plex-117 reporter+balance reagent acylated residue","termid":"MOD:01556"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent O-acylated residue","termid":"MOD:01714"},{"relation_name":"is_a","term_name":"O3-acylated L-serine","termid":"MOD:02003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ8plex-117 reporter+balance reagent O3-acylated serine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"}],"termid":"MOD:01561"}


id: MOD:01255
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to S-(2-sulfanylethyl)cysteine.","definition_xrefs":["PubMed:11507762","Unimod:200#S"],"direct_ancestors":[{"relation_name":"is_a","term_name":"1,2-ethanedithiol modified residue","termid":"MOD:00553"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-(2-sulfanylethyl)cysteine (Ser)","synonyms":[{"name":"EDT","type":"related"},{"name":"Ethanedithiol","type":"related"},{"name":"S-(2-mercaptoethyl)cysteine","type":"exact"}],"termid":"MOD:01255"}


id: PBO:0011506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence orphan, similar to a region of alpha-galactosidase, melibiase, possible pseudogene","termid":"PBO:0011506"}


id: PBO:0079405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta 8 class VIII","termid":"PBO:0079405"}


id: PBO:0001951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor Ace2","termid":"PBO:0001951"}


id: GO:0042574
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinoid metabolic process","termid":"GO:0001523"},{"relation_name":"is_a","term_name":"cellular aldehyde metabolic process","termid":"GO:0006081"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"retinal metabolic process","synonyms":[{"name":"retinal metabolism","type":"exact"},{"name":"retinaldehyde metabolic process","type":"exact"},{"name":"retinaldehyde metabolism","type":"exact"}],"termid":"GO:0042574"}


id: GO:1902309
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of peptidyl-serine dephosphorylation.","definition_xrefs":["GOC:TermGenie","PMID:11953308","GOC:BHF","GOC:mtg_cardiac_conduct_nov11","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein dephosphorylation","termid":"GO:0035308"},{"relation_name":"is_a","term_name":"regulation of peptidyl-serine dephosphorylation","termid":"GO:1902308"},{"relation_name":"negatively_regulates","term_name":"peptidyl-serine dephosphorylation","termid":"GO:0070262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of peptidyl-serine dephosphorylation","synonyms":[{"name":"down regulation of peptidyl-serine dephosphorylation","type":"exact"},{"name":"down-regulation of peptidyl-serine dephosphorylation","type":"exact"},{"name":"downregulation of peptidyl-serine dephosphorylation","type":"exact"},{"name":"inhibition of peptidyl-serine dephosphorylation","type":"narrow"}],"termid":"GO:1902309"}


id: GO:0047882
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: AH(2) + estradiol-17beta + O2 = 6beta-hydroxyestradiol-17beta + A + H2O.","definition_xrefs":["RHEA:19137","EC:1.14.99.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"estradiol 6-beta-monooxygenase activity","secondary_identifiers":["MetaCyc:ESTRADIOL-6-BETA-MONOOXYGENASE-RXN","KEGG_REACTION:R03086"],"synonyms":[{"name":"estradiol 6-beta-hydroxylase activity","type":"related"},{"name":"estradiol 6b-hydroxylase activity","type":"exact"},{"name":"estradiol 6b-monooxygenase activity","type":"exact"},{"name":"estradiol 6beta-hydroxylase activity","type":"related"},{"name":"estradiol 6beta-monooxygenase activity","type":"related"},{"name":"estradiol-17beta,hydrogen-donor:oxygen oxidoreductase (6beta-hydroxylating)","type":"related"}],"termid":"GO:0047882"}


id: PBO:0001042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RING-box protein 1","termid":"PBO:0001042"}


id: PR:P0CT83
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl1201 gene.","definition_xrefs":["UniProtKB:P0CT83","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L12-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16C4.13c","synonyms":[{"name":"Spom972h-rpl1201","type":"exact"}],"termid":"PR:P0CT83"}


id: GO:0033933
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of (1->2)-alpha-D-glucosidic linkages at the branch points of dextrans and related polysaccharides, producing free D-glucose.","definition_xrefs":["EC:3.2.1.115"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosidase activity","termid":"GO:0015926"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0016798","GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"branched-dextran exo-1,2-alpha-glucosidase activity","secondary_identifiers":["MetaCyc:3.2.1.115-RXN"],"synonyms":[{"name":"1,2-alpha-D-glucosyl-branched-dextran 2-glucohydrolase activity","type":"related"},{"name":"dextran 1,2-alpha-glucosidase activity","type":"related"},{"name":"dextran alpha-1,2 debranching enzyme","type":"related"}],"termid":"GO:0033933"}


id: PBO:0048584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-glutamyltransferase 8 pseudogene","termid":"PBO:0048584"}


id: GO:0047390
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sn-glycero-3-phosphocholine + H2O = choline phosphate + glycerol + H+.","definition_xrefs":["EC:3.1.4.38","RHEA:19545"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoric diester hydrolase activity","termid":"GO:0008081"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016788","GO:0016787"],"is_obsolete":false,"name":"glycerophosphocholine cholinephosphodiesterase activity","secondary_identifiers":["KEGG_REACTION:R02591","MetaCyc:3.1.4.38-RXN","Reactome:R-HSA-6814797"],"synonyms":[{"name":"L-3-glycerylphosphinicocholine cholinephosphohydrolase activity","type":"related"},{"name":"sn-glycero-3-phosphocholine cholinephosphohydrolase activity","type":"related"}],"termid":"GO:0047390"}


id: PBO:0044946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydrofolate reductase pseudogene 1","termid":"PBO:0044946"}


id: PBO:0069160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 412, pseudogene","termid":"PBO:0069160"}


id: GO:0010696
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of the process involving the release of duplicated mitotic spindle pole bodies (SPBs) and their migration away from each other within the nuclear membrane.","definition_xrefs":["PMID:16792804","GOC:tb","PMID:18500339","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitotic spindle pole body separation","termid":"GO:0010695"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle process","termid":"GO:0090068"},{"relation_name":"positively_regulates","term_name":"initial mitotic spindle pole body separation","termid":"GO:0000073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"positive regulation of mitotic spindle pole body separation","synonyms":[{"name":"positive regulation of SPB separation","type":"exact"}],"termid":"GO:0010696"}


id: PATO:0000173
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000173 function (obsolete PATO:0000173)","termid":"PATO:0000173"}


id: PBO:0065239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 13 pseudogene 7","termid":"PBO:0065239"}


id: PBO:0001071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA specific adenosine deaminase subunit Tad3","termid":"PBO:0001071"}


id: PBO:0082243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha subunit of farnesyltransferase and geranylgeranyltransferase-I; farnesyltransferase (Ram2p-Ram1p heterodimer) catalyzes the addition of 15-carbon isoprenoid farnesyl to substrate proteins containing a CAAX consensus motif; type I geranylgeranyltransferase (Ram2p-Cdc43p heterodimer) catalyzes the addition of the 20-carbon isoprenoid geranylgeranyl to substrate proteins containing a CaaL consensus motif; required for membrane localization of Ras proteins and a-factor","termid":"PBO:0082243"}


id: PBO:0047356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box and leucine rich repeat protein, pseudogene","termid":"PBO:0047356"}


id: PBO:0038323
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malacards_displayed_disease_name","termid":"PBO:0038323"}


id: GO:0030001
data:
  {"annotated_genes":["SJAG_04698","SJAG_02877","SJAG_01119","SJAG_04185","SJAG_02473","SJAG_00321","SJAG_04830","SJAG_03401","SJAG_02445","SJAG_01078","SJAG_01353","SJAG_02532","SJAG_00222","SJAG_02735","SJAG_03079","SJAG_04737","SJAG_04167","SJAG_02322","SJAG_02484","SJAG_01541","SJAG_00211","SJAG_00328","SJAG_05229","SJAG_01090","SJAG_03231","SJAG_02399","SJAG_03895","SJAG_04743","SJAG_02578","SJAG_01527","SJAG_02883","SJAG_01990","SJAG_04551","SJAG_04260","SJAG_04675","SJAG_01803","SJAG_03631","SJAG_01400","SJAG_03399","SJAG_04677","SJAG_03528","SJAG_04246","SJAG_00547","SJAG_01007","SJAG_02019","SJAG_03850","SJAG_02968","SJAG_03497","SJAG_04616","SJAG_03516","SJAG_03873","SJAG_04668","SJAG_00296","SJAG_01493","SJAG_04867","SJAG_04096","SJAG_02457","SJAG_02834","SJAG_01639","SJAG_02440","SJAG_04028","SJAG_04757"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92688],"is_not":false,"summary":null,"term":"GO:0030001"},{"annotations":[114267],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036249"},{"annotations":[63484],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070574"},{"annotations":[91776,93496],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036444"},{"annotations":[95753,88546,110554,88493],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098703"},{"annotations":[111667],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140146"},{"annotations":[97755,86863,110050,92124,90952,94463,91825,91595,105507,104796],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070588"},{"annotations":[103985],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060003"},{"annotations":[108918],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015677"},{"annotations":[84137,110703],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098705"},{"annotations":[97607],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097430"},{"annotations":[61730,100745,65804,99920],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035434"},{"annotations":[100835],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006825"},{"annotations":[87349],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061856"},{"annotations":[86865],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032472"},{"annotations":[94220,96612,109921],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048250"},{"annotations":[88593,91466,60735,108919,109342,99929],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034755"},{"annotations":[85450],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140466"},{"annotations":[110745],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990616"},{"annotations":[86391,103720,56762],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903830"},{"annotations":[86866,63485,91467,104798,60734,87350,99930],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071421"},{"annotations":[103444],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045016"},{"annotations":[90356],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140141"},{"annotations":[109491,87367],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1905949"},{"annotations":[112111],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098716"},{"annotations":[112112],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035444"},{"annotations":[98274],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1905665"},{"annotations":[108472],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097623"},{"annotations":[93138,85680],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990573"},{"annotations":[60862,57216,93139,66456,85490],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071805"},{"annotations":[99921,108920,88594,88598],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033215"},{"annotations":[89522],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051209"},{"annotations":[104799],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061454"},{"annotations":[106915,61568,106914,61324],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044718"},{"annotations":[108921],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015891"},{"annotations":[106916,61325,61569,106917],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033214"},{"annotations":[92880],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036376"},{"annotations":[60853,85492,66457],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035725"},{"annotations":[108473],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006814"},{"annotations":[110460],"is_not":fal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directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic cation 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id: PR:P0CS86
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1348.01 gene.","definition_xrefs":["UniProtKB:P0CS86","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0494 membrane protein C1348.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1348.01","synonyms":[{"name":"Spom972h-SPBC1348.01","type":"exact"}],"termid":"PR:P0CS86"}


id: FYPO:0000997
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell is shaped in the form of a pear when the cell is subject to nitrogen starvation. One end is rounded, while the other resembles an end of a normal rod-shaped cell. The normally shaped end has the same diameter as a wild-type cell.","definition_xrefs":["PMID:19366728","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pear-shaped cell","termid":"FYPO:0000020"},{"relation_name":"is_a","term_name":"abnormal cell morphology during nitrogen starvation","termid":"FYPO:0000995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000005"],"is_obsolete":false,"name":"pear-shaped cell during nitrogen starvation","synonyms":[{"name":"cell morphology, pear shaped during nitrogen starvation","type":"exact"},{"name":"ice cream cone-shaped cell during nitrogen starvation","type":"exact"},{"name":"pear-shaped cell during nitrogen depletion","type":"exact"},{"name":"pear-shaped cell during nitrogen deprivation","type":"exact"}],"termid":"FYPO:0000997"}


id: PBO:0077431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM167A pseudogene 2","termid":"PBO:0077431"}


id: PBO:0050563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HRG pseudogene 1","termid":"PBO:0050563"}


id: PBO:0074508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNAP associated protein","termid":"PBO:0074508"}


id: PBO:0043760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10","termid":"PBO:0043760"}


id: PBO:0066398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regenerating family member 1 beta","termid":"PBO:0066398"}


id: GO:0018632
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: p-nitrophenol + O2 + NADPH = H2O + NADP+ + nitrite + p-benzoquinone.","definition_xrefs":["RHEA:34327"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"4-nitrophenol 4-monooxygenase activity","secondary_identifiers":["MetaCyc:RXN-8739","EC:1.14.13.167","UM-BBD_reactionID:r0226"],"termid":"GO:0018632"}


id: PBO:0064098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paired like homeodomain 3","termid":"PBO:0064098"}


id: SO:0001866
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A contig of BAC reads.","definition_xrefs":["GMOD:ea"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"BAC","termid":"SO:0000153"},{"relation_name":"is_a","term_name":"contig","termid":"SO:0000149"},{"relation_name":"part_of","term_name":"BAC","termid":"SO:0000153"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAC_read_contig","synonyms":[{"name":"BAC read contig","type":"exact"}],"termid":"SO:0001866"}


id: PBO:0056515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane bound O-acyltransferase domain containing 1","termid":"PBO:0056515"}


id: PBO:0043989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colony stimulating factor 3","termid":"PBO:0043989"}


id: GO:0070387
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A procollagen-proline 4-dioxygenase complex that contains alpha subunits of the type II isoform; its activity is inhibited by poly(L-proline) only at high concentrations.","definition_xrefs":["PMID:7753822","PMID:14500733"],"direct_ancestors":[{"relation_name":"is_a","term_name":"procollagen-proline 4-dioxygenase complex","termid":"GO:0016222"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005783","GO:0005737"],"is_obsolete":false,"name":"procollagen-proline 4-dioxygenase complex, alpha(II) type","synonyms":[{"name":"procollagen-proline, 2-oxoglutarate-4-dioxygenase complex, alpha(II) type","type":"exact"},{"name":"prolyl 4-hydroxylase complex (alpha(II)-type)","type":"broad"}],"termid":"GO:0070387"}


id: PBO:0077052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THRB intronic transcript 1","termid":"PBO:0077052"}


id: PBO:0036280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate 5-kinase Pro2","termid":"PBO:0036280"}


id: PBO:0053129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lactase","termid":"PBO:0053129"}


id: PBO:0051414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable 1-62 (pseudogene)","termid":"PBO:0051414"}


id: GO:1903713
data:
  {"annotated_genes":["SJAG_04725","SJAG_02029"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98929,106155],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990591"}]},"cv_name":"biological_process","definition":"The directed movement of asparagine across a membrane.","definition_xrefs":["GOC:TermGenie","PMID:18503766","GO_REF:0000069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane transport","termid":"GO:0003333"},{"relation_name":"is_a","term_name":"amide transport","termid":"GO:0042886"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02029":null,"SJAG_04725":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"asparagine transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1903713","terms_by_termid":{"GO:1990591":null}}


id: GO:0061463
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction O-acetyl-ADP-ribose + H2O = ADP-ribose + acetate.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deacetylase activity","termid":"GO:0019213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0019213"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0019213","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"O-acetyl-ADP-ribose deacetylase activity","termid":"GO:0061463"}


id: PBO:0080135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"valyl-tRNA synthetase 1","termid":"PBO:0080135"}


id: PBO:0071624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a pseudogene 43","termid":"PBO:0071624"}


id: GO:0008390
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: testosterone + donor-H2 + O2 = 16-alpha-hydroxytestosterone + H2O.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid hydroxylase activity","termid":"GO:0008395"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"testosterone 16-alpha-hydroxylase activity","synonyms":[{"name":"cytochrome P450 CYP2B10","type":"narrow"},{"name":"cytochrome P450 CYP2B9","type":"narrow"},{"name":"cytochrome P450 CYP2D10","type":"narrow"},{"name":"cytochrome P450 CYP2D11","type":"narrow"},{"name":"cytochrome P450 CYP2D9","type":"narrow"}],"termid":"GO:0008390"}


id: GO:0045433
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process during wing vibration where the male insect produces a species-specific acoustic signal called a love song.","definition_xrefs":["GOC:mtg_sensu","PMID:11092827"],"direct_ancestors":[{"relation_name":"is_a","term_name":"male courtship behavior","termid":"GO:0008049"},{"relation_name":"part_of","term_name":"male courtship behavior, veined wing vibration","termid":"GO:0016545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"male courtship behavior, veined wing generated song production","synonyms":[{"name":"male courtship behavior, song production","type":"broad"},{"name":"male courtship behaviour, song production","type":"broad"},{"name":"male courtship behaviour, veined wing generated song production","type":"exact"}],"termid":"GO:0045433"}


id: PBO:0073179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenoprotein K pseudogene 1","termid":"PBO:0073179"}


id: PBO:0064043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 77","termid":"PBO:0064043"}


id: PBO:0042300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD8 subunit beta","termid":"PBO:0042300"}


id: PBO:0031089
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_manganese_depletion","termid":"PBO:0031089"}


id: FYPO:0008078
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which meiotic sister kinetochore association in meiotic metaphase I, is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:34851403"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal meiotic cell cycle process","termid":"FYPO:0007078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal meiotic sister kinetochore association in meiotic metaphase I","termid":"FYPO:0008078"}


id: GO:0047603
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetoacetyl-CoA + H2O = acetoacetate + CoA + H+.","definition_xrefs":["EC:3.1.2.11","RHEA:15673"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyl-CoA hydrolase activity","termid":"GO:0016289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0016788","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"acetoacetyl-CoA hydrolase activity","secondary_identifiers":["KEGG_REACTION:R01358","MetaCyc:ACETOACETYL-COA-HYDROLASE-RXN"],"synonyms":[{"name":"acetoacetyl CoA deacylase activity","type":"related"},{"name":"acetoacetyl coenzyme A deacylase activity","type":"related"},{"name":"acetoacetyl coenzyme A hydrolase activity","type":"related"}],"termid":"GO:0047603"}


id: PBO:0026804
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_meiotic_recombination_double-strand_break_repair","termid":"PBO:0026804"}


id: GO:1902016
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid.","definition_xrefs":["UniPathway:UPA00789","PMID:16735734","UniPathway:UPA00828","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"teichoic acid biosynthetic process","termid":"GO:0019350"},{"relation_name":"is_a","term_name":"poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid metabolic process","termid":"GO:1902015"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0044085","GO:0044281","GO:0008150","GO:0071554"],"is_obsolete":false,"name":"poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid biosynthetic process","synonyms":[{"name":"poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid anabolism","type":"exact"},{"name":"poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid biosynthesis","type":"exact"},{"name":"poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid formation","type":"exact"},{"name":"poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid synthesis","type":"exact"},{"name":"poly(glucosyl N-acetylgalactosamine 1-phosphate) teichoic acid biosynthesis","type":"exact"},{"name":"poly(glucosyl N-acetylgalactosamine 1-phosphate) teichoic acid biosynthetic process","type":"exact"}],"termid":"GO:1902016"}


id: SO:0002039
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A shRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_part","term_name":"pre_miRNA","termid":"SO:0001244"},{"relation_name":"is_a","term_name":"shRNA_primary_transcript","termid":"SO:0002038"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"miR_encoding_shRNA_primary_transcript","synonyms":[{"name":"miR encoding shRNA primary transcript","type":"exact"}],"termid":"SO:0002039"}


id: PBO:0109223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin gamma complex component 4","termid":"PBO:0109223"}


id: PBO:0091674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tgp1 sense interfering RNA","termid":"PBO:0091674"}


id: GO:0019226
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The neurological system process in which a signal is transmitted through the nervous system by a combination of action potential propagation and synaptic transmission.","definition_xrefs":["GOC:curators","ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system process","termid":"GO:0050877"},{"relation_name":"part_of","term_name":"cell communication","termid":"GO:0007154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"transmission of nerve impulse","synonyms":[{"name":"conduction of nerve impulse","type":"exact"},{"name":"signal transmission along a neuron","type":"exact"}],"termid":"GO:0019226"}


id: GO:0052134
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of environmental oxygen on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete negative aerotaxis on or near host (obsolete GO:0052134)","termid":"GO:0052134"}


id: PBO:0031475
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-growth_auxotrophic_for_adenine","termid":"PBO:0031475"}


id: PBO:0038320
data:
  {"annotation_feature_type":"gene","cv_name":"pubprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pubmed_entrez_date","termid":"PBO:0038320"}


id: SO:0001313
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"N6_N6_2prime_O_trimethyladenosine is a modified adenosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_adenosine","termid":"SO:0001273"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N6_N6_2_prime_O_trimethyladenosine","secondary_identifiers":["RNAMOD:089"],"synonyms":[{"name":"N6,N6,2'-O-trimethyladenosine","type":"exact"},{"name":"m62Am","type":"exact"}],"termid":"SO:0001313"}


id: PBO:0108555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication licensing factor Cdt1","termid":"PBO:0108555"}


id: PBO:0006832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin-like protein, Ino80 complex subunit Arp8","termid":"PBO:0006832"}


id: GO:0002942
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whereby a guanine residue in a transfer RNA is methylated twice at the N2 position.","definition_xrefs":["GOC:hjd","ISBN:155581073X"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA methylation","termid":"GO:0030488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006399"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0006399"],"is_obsolete":false,"name":"tRNA m2,2-guanine biosynthesis","termid":"GO:0002942"}


id: PBO:0070107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 21 pseudogene","termid":"PBO:0070107"}


id: PR:P87214
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A uroporphyrinogen-III synthase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12390:SF0","PRO:DNx","OMA:SCHPO01252"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uroporphyrinogen-III synthase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31G5.08","secondary_identifiers":["UniProtKB:P87214"],"synonyms":[{"name":"Spom972h-UROS","type":"exact"},{"name":"UROIIIS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"UROS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"hydroxymethylbilane hydrolyase [cyclizing] (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"uroporphyrinogen-III cosynthase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87214"}


id: PBO:0040931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 interacting protein 3 pseudogene 2","termid":"PBO:0040931"}


id: GO:0050216
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD+ + propane-1,2-diol 1-phosphate = H+ + hydroxyacetone phosphate + NADH.","definition_xrefs":["EC:1.1.1.7","RHEA:21584"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"propanediol-phosphate dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R04236","MetaCyc:PROPANEDIOL-PHOSPHATE-DEHYDROGENASE-RXN"],"termid":"GO:0050216"}


id: MOD:01076
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass - OBSOLETE because redundant and identical to MOD:00414. Remap to MOD:00414.","definition_xrefs":["DeltaMass:215"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:01076 N-methyl arginyl (obsolete MOD:01076)","termid":"MOD:01076"}


id: SO:0001087
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Posttranslationally formed amino acid bonds.","definition_xrefs":["UniProt:curation_manual","EBIBS:GAR"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0001087 cross_link (obsolete SO:0001087)","synonyms":[{"name":"cross link","type":"exact"},{"name":"crosslink","type":"related"}],"termid":"SO:0001087"}


id: GO:0010562
data:
  {"annotated_genes":["SJAG_00685"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85864],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905857"}]},"cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular metabolic process","termid":"GO:0031325"},{"relation_name":"is_a","term_name":"regulation of phosphorus metabolic process","termid":"GO:0051174"},{"relation_name":"positively_regulates","term_name":"phosphorus metabolic process","termid":"GO:0006793"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00685":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of phosphorus metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010562","terms_by_termid":{"GO:1905857":null}}


id: FYPO:0000052
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which a cell does not proceed normally through a meiotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell cycle","termid":"FYPO:0000011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal meiotic cell cycle","synonyms":[{"name":"meiotic cell cycle defects","type":"exact"}],"termid":"FYPO:0000052"}


id: GO:0042490
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a mechanoreceptor, a cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system.","definition_xrefs":["GOC:jl","CL:0000199"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron differentiation","termid":"GO:0030182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mechanoreceptor differentiation","termid":"GO:0042490"}


id: GO:0102335
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N,N'-diacetyl-alpha-D-bacillosaminyl-diphospho-tri-trans,hepta-cis-undecaprenol + UDP-N-acetyl-D-galactosamine = N-acetyl-D-galactosaminyl-alpha-(1->3)-N,N'-diacetyl-alpha-D-bacillosaminyl-diphospho-tri-trans,hepta-cis-undecaprenol + UDP + H+.","definition_xrefs":["GOC:pz","EC:2.4.1.290"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0016757","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"N,N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase activity","secondary_identifiers":["MetaCyc:RXN-13274","RHEA:34511"],"termid":"GO:0102335"}


id: PR:Q9P6S4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- meu25 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P6S4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic expression up-regulated protein 25 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC27.03","synonyms":[{"name":"Spom972h-meu25","type":"exact"}],"termid":"PR:Q9P6S4"}


id: GO:0050242
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + phosphate + pyruvate = AMP + diphosphate + 2 H+ + phosphoenolpyruvate.","definition_xrefs":["EC:2.7.9.1","RHEA:10756"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, paired acceptors","termid":"GO:0016781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"pyruvate, phosphate dikinase activity","secondary_identifiers":["KEGG_REACTION:R00206","MetaCyc:PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN"],"synonyms":[{"name":"ATP:pyruvate, phosphate phosphotransferase activity","type":"related"},{"name":"PPDK","type":"related"},{"name":"orthophosphate dikinase pyruvate","type":"related"},{"name":"pyruvate, Pi dikinase activity","type":"related"},{"name":"pyruvate,orthophosphate dikinase activity","type":"related"},{"name":"pyruvate,phosphate dikinase activity","type":"related"},{"name":"pyruvate-inorganic phosphate dikinase activity","type":"related"},{"name":"pyruvate-phosphate dikinase (phosphorylating)","type":"related"},{"name":"pyruvate-phosphate dikinase activity","type":"related"},{"name":"pyruvate-phosphate ligase activity","type":"related"},{"name":"pyruvic-phosphate dikinase activity","type":"related"},{"name":"pyruvic-phosphate ligase activity","type":"related"}],"termid":"GO:0050242"}


id: FYPO:0002136
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which an RNA catabolic process is abnormal.","definition_xrefs":["PomBase:mah","GO:0006401"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleic acid metabolism phenotype during vegetative growth","termid":"FYPO:0001347"},{"relation_name":"is_a","term_name":"abnormal metabolic process during vegetative growth","termid":"FYPO:0001363"},{"relation_name":"is_a","term_name":"abnormal RNA catabolic process","termid":"FYPO:0003551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000294"],"is_obsolete":false,"name":"abnormal RNA catabolic process during vegetative growth","synonyms":[{"name":"abnormal RNA breakdown during vegetative growth","type":"exact"},{"name":"abnormal RNA catabolic process during mitotic cell cycle","type":"related"},{"name":"abnormal RNA catabolism during vegetative growth","type":"exact"},{"name":"abnormal RNA degradation during vegetative growth","type":"exact"}],"termid":"FYPO:0002136"}


id: GO:0016100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of monoterpenoid compounds, terpenoids having a C10 skeleton.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoterpenoid metabolic process","termid":"GO:0016098"},{"relation_name":"is_a","term_name":"terpenoid catabolic process","termid":"GO:0016115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"monoterpenoid catabolic process","synonyms":[{"name":"monoterpenoid breakdown","type":"exact"},{"name":"monoterpenoid catabolism","type":"exact"},{"name":"monoterpenoid degradation","type":"exact"}],"termid":"GO:0016100"}


id: PBO:0085822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; expression is regulated by phosphate levels","termid":"PBO:0085822"}


id: _global:indirectly_causally_upstream_of
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q.","direct_ancestors":[{"relation_name":"is_a","term_name":"causally_upstream_of","termid":"_global:causally_upstream_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"indirectly_causally_upstream_of","secondary_identifiers":["RO:0012011"],"termid":"_global:indirectly_causally_upstream_of"}


id: PBO:0077699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNKS2 divergent transcript","termid":"PBO:0077699"}


id: GO:0008260
data:
  {"annotated_genes":["SJAG_02769"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87589],"is_not":false,"summary":null,"term":"GO:0008260"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: succinyl-CoA + a 3-oxo acid = succinate + a 3-oxo-acyl-CoA.","definition_xrefs":["RHEA:24564","PMID:10964512","GOC:vw","PMID:8844009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-transferase activity","termid":"GO:0008410"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02769":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016782","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"succinyl-CoA:3-oxo-acid CoA-transferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:3-OXOACID-COA-TRANSFERASE-RXN","EC:2.8.3.5","Reactome:R-HSA-74177","GO:0106424"],"synonyms":[{"name":"3-oxo-CoA transferase activity","type":"related"},{"name":"3-oxoacid CoA dehydrogenase activity","type":"related"},{"name":"3-oxoacid CoA-transferase activity","type":"exact"},{"name":"3-oxoacid coenzyme A-transferase activity","type":"related"},{"name":"Succinyl-CoA:3-ketoacid-CoA transferase","type":"exact"},{"name":"acetoacetate succinyl-CoA transferase activity","type":"related"},{"name":"acetoacetyl coenzyme A-succinic thiophorase activity","type":"related"},{"name":"succinyl coenzyme A-acetoacetyl coenzyme A-transferase activity","type":"related"},{"name":"succinyl-CoA 3-ketoacid-CoA transferase activity","type":"related"},{"name":"succinyl-CoA transferase activity","type":"related"}],"termid":"GO:0008260","terms_by_termid":{"GO:0008260":null}}


id: GO:0030478
data:
  {"annotated_genes":["SJAG_04624"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[85539],"is_not":false,"summary":null,"term":"GO:0030478"}]},"cv_name":"cellular_component","definition":"Polarized accumulation of cytoskeletal proteins (including F-actin) and regulatory proteins in a cell. An example of this is the actin cap found in Saccharomyces cerevisiae.","definition_xrefs":["GOC:mah","PMID:21494665"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cortical actin cytoskeleton","termid":"GO:0030864"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04624":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005938"}],"interesting_parent_ids":["GO:0005737","GO:0015629","GO:0005575","GO:0005938"],"is_obsolete":false,"name":"actin cap","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0000143"],"termid":"GO:0030478","terms_by_termid":{"GO:0030478":null}}


id: PBO:0060542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NAV2 antisense RNA 2","termid":"PBO:0060542"}


id: PBO:0076050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stathmin 4","termid":"PBO:0076050"}


id: PBO:0077892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TP53RK binding protein pseudogene 1","termid":"PBO:0077892"}


id: PBO:0064026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 60","termid":"PBO:0064026"}


id: PBO:0045040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dyskerin pseudouridine synthase 1","termid":"PBO:0045040"}


id: GO:0048761
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a collenchyma cell. This is a plant cell in which the primary cell walls are unevenly thickened, with most thickening occurring at the cell corners. Cells are living and able to grow, they are elongated, and lignin and secondary walls absent. Collenchyma cells make up collenchyma tissue which acts as a supporting tissue in growing shoots, leaves and petioles. This tissue is often arranged in cortical ribs, as seen prominently in celery and rhubarb petioles.","definition_xrefs":["CL:0000330","GOC:jid","PO:0000075"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"collenchyma cell differentiation","termid":"GO:0048761"}


id: PBO:0029980
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_trifluoperazine","termid":"PBO:0029980"}


id: SO:0000976
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A feature_attribute describing a feature that is not manifest under normal conditions.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_attribute","termid":"SO:0000733"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cryptic","termid":"SO:0000976"}


id: PBO:0069354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 614, pseudogene","termid":"PBO:0069354"}


id: GO:0044505
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that activates or increases the frequency, rate or extent of the activity of a G protein-coupled receptor in a second organism.","definition_xrefs":["GOC:jl","PMID:8405712","GOC:fj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of G protein-coupled receptor activity in another organism","termid":"GO:0044503"},{"relation_name":"is_a","term_name":"positive regulation of receptor activity in another organism","termid":"GO:0044507"},{"relation_name":"is_a","term_name":"positive regulation of signaling receptor activity","termid":"GO:2000273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of G protein-coupled receptor activity in another organism","synonyms":[{"name":"positive regulation of G protein-coupled receptor activity in other organism","type":"exact"},{"name":"positive regulation of G-protein coupled receptor activity in other organism","type":"exact"}],"termid":"GO:0044505"}


id: PBO:0016575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF1941 family protein, human neurochondrin ortholog","termid":"PBO:0016575"}


id: PBO:0065949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD17 checkpoint clamp loader component","termid":"PBO:0065949"}


id: GO:1902354
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any blood vessel endothelial cell delamination that is involved in blood vessel lumen ensheathment.","definition_xrefs":["PMID:23698350","GOC:TermGenie","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"blood vessel endothelial cell delamination","termid":"GO:0097497"},{"relation_name":"part_of","term_name":"blood vessel lumen ensheathment","termid":"GO:0097496"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"blood vessel endothelial cell delamination involved in blood vessel lumen ensheathment","termid":"GO:1902354"}


id: PBO:0041394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C5orf64 antisense RNA 1","termid":"PBO:0041394"}


id: GO:0086019
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that mediates the transfer of information from one cell to another and contributes to the heart process that regulates cardiac muscle contraction; beginning with the generation of an action potential in the sinoatrial node and ending with regulation of contraction of the myocardium.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling","termid":"GO:0007267"},{"relation_name":"is_a","term_name":"cell communication involved in cardiac conduction","termid":"GO:0086065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"cell-cell signaling involved in cardiac conduction","synonyms":[{"name":"cell-cell signalling involved in cardiac conduction","type":"exact"}],"termid":"GO:0086019"}


id: PBO:0074687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 67","termid":"PBO:0074687"}


id: GO:0046308
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of Z-phenylacetaldoxime, a member of the glucosinolate group of compounds.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Z-phenylacetaldoxime metabolic process","termid":"GO:0018983"},{"relation_name":"is_a","term_name":"organic substance catabolic process","termid":"GO:1901575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Z-phenylacetaldoxime catabolic process","synonyms":[{"name":"Z-phenylacetaldoxime breakdown","type":"exact"},{"name":"Z-phenylacetaldoxime catabolism","type":"exact"},{"name":"Z-phenylacetaldoxime degradation","type":"exact"}],"termid":"GO:0046308"}


id: GO:1904180
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of membrane depolarization.","definition_xrefs":["PMID:20826763","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane depolarization","termid":"GO:0003254"},{"relation_name":"is_a","term_name":"negative regulation of biological process","termid":"GO:0048519"},{"relation_name":"negatively_regulates","term_name":"membrane depolarization","termid":"GO:0051899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of membrane depolarization","synonyms":[{"name":"down regulation of membrane depolarization","type":"exact"},{"name":"down-regulation of membrane depolarization","type":"exact"},{"name":"downregulation of membrane depolarization","type":"exact"},{"name":"inhibition of membrane depolarization","type":"narrow"}],"termid":"GO:1904180"}


id: PBO:0013002
data:
  {"annotation_feature_type":"gene","cv_name":"feature_relationshipprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"curator_name","termid":"PBO:0013002"}


id: GO:0035052
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of dorsal vessel cardioblast cells to an aortic cell fate and their capacity to differentiate into aortic cells. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["GOC:mtg_sensu","GOC:bf","PMID:12397110"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate commitment involved in pattern specification","termid":"GO:0060581"},{"relation_name":"is_a","term_name":"cardiac cell fate commitment","termid":"GO:0060911"},{"relation_name":"part_of","term_name":"embryonic heart tube anterior/posterior pattern specification","termid":"GO:0035054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dorsal vessel aortic cell fate commitment","termid":"GO:0035052"}


id: PR:Q09865
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 50S ribosomal protein L6 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00126","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"54S ribosomal protein L6, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC12G12.08","secondary_identifiers":["UniProtKB:Q09865"],"synonyms":[{"name":"Spom972h-rplF","type":"exact"}],"termid":"PR:Q09865"}


id: GO:0007083
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The cell cycle process in which chromosome structure is altered from the condensed form taken on during mitosis to the relaxed disperse form held in resting cells.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete mitotic chromosome decondensation (obsolete GO:0007083)","termid":"GO:0007083"}


id: GO:0010525
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of RNA-mediated transposition. RNA-mediated transposition is a type of transpositional recombination which occurs via an RNA intermediate.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transposition, RNA-mediated (obsolete GO:0010525)","termid":"GO:0010525"}


id: PBO:0082349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase of the DEAD-box protein family; has strong preference for dsRNA; remodels RNA-protein complex (RNP) to facilitate efficient transcription termination ; required for assembly of Yra1p, Nab2p and Mex67p onto mRNA and formation of nuclear mRNP; involved in mRNA decay and rRNA processing; may be involved in suppression of transcription from cryptic initiation sites","termid":"PBO:0082349"}


id: PR:Q09829
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- puf5 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09829"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pumilio domain-containing protein C4G8.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4G8.03c","synonyms":[{"name":"Spom972h-puf5","type":"exact"}],"termid":"PR:Q09829"}


id: MOD:01364
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative -","definition_xrefs":["Unimod:478#S","PubMed:11467524"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fluorescein-5-thiosemicarbazide","termid":"MOD:00626"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fluorescein-5-thiosemicarbazide - site S","synonyms":[{"name":"FTC","type":"related"},{"name":"fluorescein-5-thiosemicarbazide","type":"related"}],"termid":"MOD:01364"}


id: MOD:01426
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that forms an adduct with a particular isotope labeled compound used as a reagent.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isotope tagged reagent derivatized residue","termid":"MOD:01426"}


id: PBO:0053781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1031","termid":"PBO:0053781"}


id: GO:0047849
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sucrose + 1,6-alpha-D-glucosyl(n) = D-fructose + 1,6-alpha-D-glucosyl(n+1).","definition_xrefs":["EC:2.4.1.5","MetaCyc:DEXTRANSUCRASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016757","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"dextransucrase activity","secondary_identifiers":["MetaCyc:2.4.1.125-RXN"],"synonyms":[{"name":"CEP","type":"related"},{"name":"SGE","type":"related"},{"name":"sucrose 6-glucosyltransferase activity","type":"related"},{"name":"sucrose-1,6-alpha-glucan glucosyltransferase activity","type":"related"},{"name":"sucrose:1,6-alpha-D-glucan 6-alpha-D-glucosyltransferase activity","type":"related"}],"termid":"GO:0047849"}


id: PBO:0049325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIA subunit 2","termid":"PBO:0049325"}


id: PBO:0083201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the verified gene RPC34/YNR003C","termid":"PBO:0083201"}


id: FYPO:0004846
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of DNA replication pause sites in telomeric regions at which the protein Rad52 (also called Rad22) accumulates is greater than normal.","definition_xrefs":["PomBase:mah","PMID:26041456"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased number of Rad52 foci during vegetative growth","termid":"FYPO:0000972"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased number of Rad52 foci at telomeres","synonyms":[{"name":"increased number of Rad22 foci at telomeres","type":"exact"},{"name":"increased number of Rad52 foci at telomeres during mitotic cell cycle","type":"related"},{"name":"increased number of Rad52 foci at telomeres during vegetative growth","type":"exact"}],"termid":"FYPO:0004846"}


id: PR:Q02953
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hsf1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q02953"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock factor protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2E12.02","synonyms":[{"name":"HSF (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"HSTF (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-hsf1","type":"exact"},{"name":"heat shock transcription factor (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q02953"}


id: GO:0003269
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, which contributes to the modulation of the frequency, rate or extent of cardioblast proliferation in the secondary heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating.","definition_xrefs":["GOC:mtg_heart"],"gene_count":0,"genotype_count":0,"name":"obsolete BMP signaling pathway involved in regulation of secondary heart field cardioblast proliferation (obsolete GO:0003269)","synonyms":[{"name":"BMP signaling pathway involved in regulation of second heart field cardioblast proliferation","type":"exact"},{"name":"BMP signalling pathway involved in regulation of secondary heart field cardioblast proliferation","type":"exact"}],"termid":"GO:0003269"}


id: PBO:0058979
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"muscular LMNA interacting protein","termid":"PBO:0058979"}


id: GO:0034952
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: malonate semialdehyde + H+ = acetaldehyde + CO2.","definition_xrefs":["UM-BBD_reactionID:r0266"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"malonate semialdehyde decarboxylase activity","termid":"GO:0034952"}


id: PBO:0001488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial respiratory complex assembly protein (predicted)","termid":"PBO:0001488"}


id: PBO:0085653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in mitochondrial fission and peroxisome abundance; may have a distinct role in tethering protein aggregates to mitochondria in order to retain them in the mother cell; required for localization of Dnm1p and Mdv1p during mitochondrial division; mediates ethanol-induced apoptosis and ethanol-induced mitochondrial fragmentation","termid":"PBO:0085653"}


id: PBO:0041786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CAPSL divergent transcript","termid":"PBO:0041786"}


id: FYPO:0006858
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which methylation of lysine at position 37 of histone H3 does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K37 methylation","termid":"FYPO:0006855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0002274","FYPO:0002494","FYPO:0005447"],"is_obsolete":false,"name":"abolished histone H3-K37 methylation","synonyms":[{"name":"abolished histone H3 K37 methylation","type":"exact"},{"name":"abolished histone H3K37me","type":"exact"},{"name":"abolished histone lysine H3 K37 methylation","type":"exact"},{"name":"histone H3-K37 methylation abolished","type":"exact"},{"name":"histone H3-K37 methylation absent","type":"exact"}],"termid":"FYPO:0006858"}


id: PBO:0056140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LZTS1 antisense RNA 1","termid":"PBO:0056140"}


id: _global:acts_upstream_of,_negative_effect
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative","direct_ancestors":[{"relation_name":"is_a","term_name":"acts_upstream_of","termid":"_global:acts_upstream_of"},{"relation_name":"is_a","term_name":"acts_upstream_of_or_within,_negative_effect","termid":"_global:acts_upstream_of_or_within,_negative_effect"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acts_upstream_of,_negative_effect","secondary_identifiers":["RO:0004035"],"termid":"_global:acts_upstream_of,_negative_effect"}


id: GO:0033449
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes a GUU codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003723","GO:0060090","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"GUU codon-amino acid adaptor activity","synonyms":[{"name":"GTT codon-amino acid adaptor activity","type":"exact"},{"name":"valine tRNA","type":"related"}],"termid":"GO:0033449"}


id: GO:0140062
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 5-formylcytosine+ 2-oxoglutarate + O2 = 5-carboxylcytosine + succinate + CO2.","definition_xrefs":["PMID:27918559"],"gene_count":0,"genotype_count":0,"name":"obsolete 5-formylcytosine dioxygenase activity (obsolete GO:0140062)","synonyms":[{"name":"5fC dioxygenase","type":"exact"}],"termid":"GO:0140062"}


id: GO:0070367
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops or decreases the rate or extent of hepatocyte differentiation.","definition_xrefs":["GOC:sl","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of epithelial cell differentiation","termid":"GO:0030857"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of hepatocyte differentiation","termid":"GO:0070366"},{"relation_name":"negatively_regulates","term_name":"hepatocyte differentiation","termid":"GO:0070365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of hepatocyte differentiation","synonyms":[{"name":"down regulation of hepatocyte differentiation","type":"exact"},{"name":"down-regulation of hepatocyte differentiation","type":"exact"},{"name":"downregulation of hepatocyte differentiation","type":"exact"},{"name":"inhibition of hepatocyte differentiation","type":"narrow"},{"name":"negative regulation of liver cell differentiation","type":"exact"}],"termid":"GO:0070367"}


id: PBO:0031431
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_glycerol_dehydrogenase_activity","termid":"PBO:0031431"}


id: GO:1990449
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A G protein-coupled signalling receptor complex consisting of the calcitonin receptor and a receptor activity-modifying protein (RAMP). Amylin is produced in beta-islet cells of the pancreas. It is implicated in selective inhibition of insulin-stimulated glucose utilization and glycogen deposition in muscle, gastric emptying, gastric acid secretion, postprandial glucagon secretion and food intake and aids weight loss.","definition_xrefs":["PMID:10871269","GOC:bhm"],"gene_count":0,"genotype_count":0,"name":"obsolete amylin receptor (obsolete GO:1990449)","synonyms":[{"name":"AMY1 receptor","type":"narrow"},{"name":"AMY2 receptor","type":"narrow"},{"name":"AMY3 receptor","type":"narrow"},{"name":"CALCR-RAMP1 receptor","type":"narrow"},{"name":"CALCR-RAMP2 receptor","type":"narrow"},{"name":"CALCR-RAMP3 receptor","type":"narrow"},{"name":"amylin receptor","type":"exact"}],"termid":"GO:1990449"}


id: SO:0001505
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A collection of sequences (often chromosomes) taken as the standard for a given organism and genome assembly.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"genome","termid":"SO:0001026"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reference_genome","synonyms":[{"name":"reference genome","type":"related"}],"termid":"SO:0001505"}


id: GO:0042202
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of N-cyclopropylmelamine, a triazine compound commonly used as an insecticide.","definition_xrefs":["UM-BBD_pathwayID:cpm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-cyclopropylmelamine metabolic process","termid":"GO:0042201"},{"relation_name":"is_a","term_name":"s-triazine compound catabolic process","termid":"GO:0042204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044248"],"is_obsolete":false,"name":"N-cyclopropylmelamine catabolic process","synonyms":[{"name":"N-cyclopropylmelamine breakdown","type":"exact"},{"name":"N-cyclopropylmelamine catabolism","type":"exact"},{"name":"N-cyclopropylmelamine degradation","type":"exact"},{"name":"cyromazine catabolic process","type":"exact"},{"name":"cyromazine catabolism","type":"exact"}],"termid":"GO:0042202"}


id: PBO:0029114
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_cell_cycle_process","termid":"PBO:0029114"}


id: GO:0046362
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ribitol, a pentitol derived formally by reduction of the -CHO group of either D- or L-ribose.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribitol metabolic process","termid":"GO:0019349"},{"relation_name":"is_a","term_name":"pentitol biosynthetic process","termid":"GO:0019526"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"ribitol biosynthetic process","synonyms":[{"name":"ribitol anabolism","type":"exact"},{"name":"ribitol biosynthesis","type":"exact"},{"name":"ribitol formation","type":"exact"},{"name":"ribitol synthesis","type":"exact"}],"termid":"GO:0046362"}


id: PBO:0051209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 4-55 (pseudogene)","termid":"PBO:0051209"}


id: PBO:0082263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Aminolevulinate dehydratase; a homo-octameric enzyme, catalyzes the conversion of 5-aminolevulinate to porphobilinogen, the second step in heme biosynthesis; enzymatic activity is zinc-dependent; localizes to the cytoplasm and nucleus; human homolog ALAD can complement yeast hem2 mutant","termid":"PBO:0082263"}


id: PBO:0066099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAS protein activator like 3","termid":"PBO:0066099"}


id: PATO:0002416
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Flattened from above downward; below the normal level or the level of the surrounding parts.","definition_xrefs":["PATOC:MPATH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elevation","termid":"PATO:0001687"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sunken","termid":"PATO:0002416"}


id: GO:0001629
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete G-protein receptor 45-like receptor activity (obsolete GO:0001629)","synonyms":[{"name":"G protein receptor 45-like receptor activity","type":"exact"},{"name":"G-protein receptor 45-like receptor activity","type":"exact"},{"name":"GPR45-like receptor","type":"exact"}],"termid":"GO:0001629"}


id: MOD:02075
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that contains an L-tyrosine residue coordinated to one or more metal atoms or metal clusters.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metal or metal cluster coordinated L-tyrosine residue","termid":"MOD:02075"}


id: PBO:0058730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6858","termid":"PBO:0058730"}


id: FYPO:0000600
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which vacuolar transport begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vacuolar transport during vegetative growth","termid":"FYPO:0000597"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"delayed onset of vacuolar transport","synonyms":[{"name":"delayed onset of vacuolar protein transport","type":"narrow"},{"name":"delayed onset of vacuolar transport during mitotic cell cycle","type":"related"},{"name":"delayed onset of vacuolar transport during vegetative growth","type":"exact"},{"name":"delayed vacuolar transport","type":"exact"},{"name":"vacuolar transport: delayed","type":"related"}],"termid":"FYPO:0000600"}


id: GO:0008145
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to phenylalkylamine or one of its derivatives.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amine binding","termid":"GO:0043176"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"phenylalkylamine binding","termid":"GO:0008145"}


id: GO:0050480
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-3-(4-oxo-4,5-dihydro-1H-imidazol-5-yl)propanoic acid + H2O = N-formimidoyl-L-glutamate + H+.","definition_xrefs":["RHEA:23660","EC:3.5.2.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides","termid":"GO:0016812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0003824","GO:0016810","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"imidazolonepropionase activity","secondary_identifiers":["MetaCyc:IMIDAZOLONEPROPIONASE-RXN","KEGG_REACTION:R02288"],"synonyms":[{"name":"3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate amidohydrolase activity","type":"related"},{"name":"4(5)-imidazolone-5(4)-propionic acid hydrolase activity","type":"related"},{"name":"imidazolone propionic acid hydrolase activity","type":"related"},{"name":"imidazolone-5-propionate hydrolase activity","type":"related"}],"termid":"GO:0050480"}


id: PBO:0044487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 27 subfamily C member 1","termid":"PBO:0044487"}


id: PBO:0080474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vitronectin","termid":"PBO:0080474"}


id: PBO:0108686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HOPS complex RabGEF subunit Vam6","termid":"PBO:0108686"}


id: PBO:0108570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein Las1","termid":"PBO:0108570"}


id: PBO:0029923
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-GGPP_absent_from_cell","termid":"PBO:0029923"}


id: PBO:0046937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAM53B antisense RNA 1","termid":"PBO:0046937"}


id: PBO:0055921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 37 member A9, pseudogene","termid":"PBO:0055921"}


id: GO:0009920
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which the cell plate is formed at the equator of the spindle in the dividing cells during early telophase. An example of this is found in Arabidopsis thaliana.","definition_xrefs":["ISBN:0879015322","GOC:mtg_sensu","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell plate assembly","termid":"GO:0000919"},{"relation_name":"is_a","term_name":"mitotic cell cycle process","termid":"GO:1903047"},{"relation_name":"part_of","term_name":"plant-type cell wall biogenesis","termid":"GO:0009832"},{"relation_name":"part_of","term_name":"cytoskeleton-dependent cytokinesis","termid":"GO:0061640"},{"relation_name":"part_of","term_name":"mitotic nuclear division","termid":"GO:0140014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0071554","GO:0044085","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"cell plate formation involved in plant-type cell wall biogenesis","synonyms":[{"name":"cell plate formation involved in cellulose and pectin-containing cell wall biogenesis","type":"exact"}],"termid":"GO:0009920"}


id: PBO:0077720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNPO3 pseudogene 1","termid":"PBO:0077720"}


id: FYPO:0007768
data:
  {"alleles_by_uniquename":{"SJAG_01834:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01834","name":"pom152delta","uniquename":"SJAG_01834:allele-1"},"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03449:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"man1DHEH","gene_uniquename":"SJAG_03449","name":"Man1DHEH","uniquename":"SJAG_03449:allele-2"},"SJAG_03449:allele-3":{"allele_type":"amino_acid_insertion_and_deletion","description":"man1-1-488","gene_uniquename":"SJAG_03449","name":"man1-1-488","uniquename":"SJAG_03449:allele-3"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115283],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007770"},{"annotations":[115598,115600,115597,115596],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0004890"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which heterochromatin tethering at the nuclear periphery is abnormal. Normally, heterochromatic parts of chromosomes, such as centromeres and telomeres, are maintained at the nuclear periphery by tethering to the nuclear envelope during all or part of the cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization phenotype","termid":"FYPO:0000138"},{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01834":null,"SJAG_03449":null,"SJAG_03892":null},"genotype_count":5,"genotypes_by_uniquename":{"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Man1DHEH(man1DHEH)","display_uniquename":"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-2","expression":"Not assayed or wild type"}]}]},"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type":{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]},"man1delta":{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]},"pom152delta":{"display_name":"pom152delta","display_uniquename":"pom152delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01834:allele-1","expression":"Null"}]}]},"vps4delta":{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"abnormal heterochromatin tethering at nuclear periphery","references_by_uniquename":{"PMID:24184107":null,"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_03449","SJAG_03892","SJAG_01834"],"single_locus_genotype_uniquenames":["man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","man1delta","vps4delta","Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","pom152delta"],"synonyms":[{"name":"abnormal heterochromatin localization to nuclear periphery","type":"related"}],"termid":"FYPO:0007768","terms_by_termid":{"FYPO:0004890":null,"FYPO:0007770":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: GO:0061543
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: S-adenosyl-L-methionine + 3-demethylubiquinol-6 = S-adenosyl-L-homocysteine + ubiquinol-6.","definition_xrefs":["GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-demethylubiquinol-6 3-O-methyltransferase activity (obsolete GO:0061543)","termid":"GO:0061543"}


id: GO:0046696
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multiprotein complex that consists of at least three proteins, CD14, TLR4, and MD-2, each of which is glycosylated and which functions as a lipopolysaccharide (LPS) receptor that primes the innate immune response against bacterial pathogens.","definition_xrefs":["PMID:9665271","PMID:11706042"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor complex","termid":"GO:0043235"},{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"lipopolysaccharide receptor complex","synonyms":[{"name":"LPS receptor complex","type":"exact"}],"termid":"GO:0046696"}


id: GO:0010119
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of stomatal movement.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular process","termid":"GO:0050794"},{"relation_name":"regulates","term_name":"stomatal movement","termid":"GO:0010118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of stomatal movement","termid":"GO:0010119"}


id: PBO:0081648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 573","termid":"PBO:0081648"}


id: PBO:0042834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CFAP20 domain containing","termid":"PBO:0042834"}


id: GO:0018402
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Chondroitin sulfate components are covalently linked to a core glycoprotein via O-glycosidic linkages between xylose and serine residues.","definition_xrefs":["RESID:AA0208"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-serine modification","termid":"GO:0018209"},{"relation_name":"is_a","term_name":"chondroitin sulfate metabolic process","termid":"GO:0030204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"protein-chondroitin sulfate linkage via chondroitin sulfate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine","synonyms":[{"name":"protein-chondroitin sulphate linkage via chondroitin sulphate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine","type":"exact"}],"termid":"GO:0018402"}


id: GO:2000960
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellooligosaccharide metabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of carbohydrate metabolic process","termid":"GO:0006109"},{"relation_name":"regulates","term_name":"cellooligosaccharide metabolic process","termid":"GO:2000902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"regulation of cellooligosaccharide metabolic process","synonyms":[{"name":"regulation of cellooligosaccharide metabolism","type":"exact"}],"termid":"GO:2000960"}


id: GO:0002782
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of an antifungal peptide from a cell or a tissue.","definition_xrefs":["PMID:11807545","ISBN:0781735149","PMID:15638771","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antimicrobial peptide secretion","termid":"GO:0002776"},{"relation_name":"part_of","term_name":"antifungal peptide production","termid":"GO:0002781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810","GO:0010467"],"is_obsolete":false,"name":"antifungal peptide secretion","termid":"GO:0002782"}


id: PBO:0090047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone deacetylase complex PHD finger subunit Cti6","termid":"PBO:0090047"}


id: PBO:0072136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 13","termid":"PBO:0072136"}


id: PBO:0002427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"allantoicase (predicted)","termid":"PBO:0002427"}


id: PBO:0063332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene 8","termid":"PBO:0063332"}


id: PATO:0000310
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000310 color value (obsolete PATO:0000310)","termid":"PATO:0000310"}


id: PBO:0014277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tspO homolog, involved in the cytoplasmic to mitochondrial transport of haem (predicted)","termid":"PBO:0014277"}


id: PBO:0031001
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_mercaptoethanol","termid":"PBO:0031001"}


id: PBO:0066870
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 170","termid":"PBO:0066870"}


id: PBO:0090733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"telomerase regulatory factor Ctr1","termid":"PBO:0090733"}


id: SO:0000347
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A match against a nucleotide sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"match","termid":"SO:0000343"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleotide_match","synonyms":[{"name":"nucleotide match","type":"exact"}],"termid":"SO:0000347"}


id: PBO:0048578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-glutamyltransferase 2, pseudogene","termid":"PBO:0048578"}


id: MOD:00766
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Post-translational - C-terminal loss of lysine","definition_xrefs":["Unimod:313","PubMed:16078144"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C terminal -K from HC of MAb","synonyms":[{"name":"Loss of C-terminal K from Heavy Chain of MAb","type":"related"},{"name":"Lys-loss","type":"related"}],"termid":"MOD:00766"}


id: PBO:0110377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IL9R pseudogene 3","termid":"PBO:0110377"}


id: GO:0140210
data:
  {"annotated_genes":["SJAG_01297","SJAG_02336","SJAG_02761","SJAG_03540"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96514,100034,104396,114738],"is_not":false,"summary":null,"term":"GO:0140210"}]},"cv_name":"biological_process","definition":"Any process in which a protein is transported to the kinetochore along a microtubule.","definition_xrefs":["PMID:25472718"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to kinetochore","termid":"GO:0034501"},{"relation_name":"is_a","term_name":"establishment of protein localization to chromosome","termid":"GO:0070199"},{"relation_name":"is_a","term_name":"protein transport along microtubule","termid":"GO:0098840"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01297":null,"SJAG_02336":null,"SJAG_02761":null,"SJAG_03540":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein transport along microtubule to kinetochore","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140210","terms_by_termid":{"GO:0140210":null}}


id: PBO:0091953
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Coiled-Coil protein Quantitatively enriched","termid":"PBO:0091953"}


id: PR:P36606
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sod2 gene.","definition_xrefs":["UniProtKB:P36606","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Na(+)/H(+) antiporter (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC977.10","synonyms":[{"name":"Spom972h-sod2","type":"exact"}],"termid":"PR:P36606"}


id: PBO:0049742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heparin binding EGF like growth factor","termid":"PBO:0049742"}


id: GO:0043638
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of puromycin, an aminonucleoside antibiotic that is a potent inhibitor of translation; produced by the bacterium Streptomyces alboniger.","definition_xrefs":["GOC:jl","Wikipedia:Puromycin"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antibiotic biosynthetic process","termid":"GO:0017000"},{"relation_name":"is_a","term_name":"puromycin metabolic process","termid":"GO:0043637"},{"relation_name":"is_a","term_name":"purine ribonucleoside biosynthetic process","termid":"GO:0046129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"puromycin biosynthetic process","termid":"GO:0043638"}


id: FYPO:0004510
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which assembly of the meiotic spindle is abnormal during the second meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic spindle assembly","termid":"FYPO:0000737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000054"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000054"],"is_obsolete":false,"name":"abnormal spindle assembly during meiosis II","synonyms":[{"name":"abnormal meiosis II spindle assembly","type":"exact"},{"name":"abnormal meiosis II spindle formation","type":"exact"},{"name":"abnormal meiotic spindle assembly during meiosis II","type":"exact"},{"name":"abnormal spindle assembly at meiosis II","type":"exact"},{"name":"abnormal spindle assembly during second meiotic nuclear division","type":"exact"},{"name":"abnormal spindle assembly involved in meiosis II","type":"exact"}],"termid":"FYPO:0004510"}


id: PBO:0043750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COX7B pseudogene 4","termid":"PBO:0043750"}


id: GO:0035368
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a selenocysteine insertion sequence (SECIS), a regulatory sequence within mRNA which directs incorporation of a selenocysteine at a stop codon (UGA) during translation.","definition_xrefs":["GOC:imk","PMID:10760958"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA binding","termid":"GO:0003729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003723","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"selenocysteine insertion sequence binding","synonyms":[{"name":"SECIS binding","type":"exact"}],"termid":"GO:0035368"}


id: FYPO:0003850
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing an oligomycin antibiotic.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0002060","FYPO:0000139","FYPO:0000003","FYPO:0000257","FYPO:0002058","FYPO:0002057"],"is_obsolete":false,"name":"normal growth on oligomycin","synonyms":[{"name":"normal cell population growth in presence of oligomycin","type":"exact"},{"name":"normal cell population growth on oligomycin","type":"exact"},{"name":"normal cellular response to oligomycin","type":"related"},{"name":"normal vegetative cell population growth on oligomycin","type":"exact"}],"termid":"FYPO:0003850"}


id: PBO:0064207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasminogen activator, tissue type","termid":"PBO:0064207"}


id: GO:0007227
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals that are initiated by the transmembrane protein Smoothened. In the presence of a Hedgehog signaling molecule, the Patched protein no longer inhibits the activity of Smoothened, and Smoothened signals via the Hedgehog signaling complex to activate downstream components of the Hedgehog signaling pathway.","definition_xrefs":["PMID:15057936"],"gene_count":0,"genotype_count":0,"name":"obsolete signal transduction downstream of smoothened (obsolete GO:0007227)","termid":"GO:0007227"}


id: GO:1903548
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of growth hormone activity.","definition_xrefs":["GOC:mr","PMID:3068266","GOC:TermGenie","GO_REF:0000059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of receptor binding","termid":"GO:1900121"},{"relation_name":"is_a","term_name":"regulation of growth hormone activity","termid":"GO:1903547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of growth hormone activity","synonyms":[{"name":"down regulation of GH activity","type":"exact"},{"name":"down regulation of growth hormone activity","type":"exact"},{"name":"down regulation of pituitary growth hormone activity","type":"narrow"},{"name":"down regulation of placental growth hormone activity","type":"narrow"},{"name":"down-regulation of GH activity","type":"exact"},{"name":"down-regulation of growth hormone activity","type":"exact"},{"name":"down-regulation of pituitary growth hormone activity","type":"narrow"},{"name":"down-regulation of placental growth hormone activity","type":"narrow"},{"name":"downregulation of GH activity","type":"exact"},{"name":"downregulation of growth hormone activity","type":"exact"},{"name":"downregulation of pituitary growth hormone activity","type":"narrow"},{"name":"downregulation of placental growth hormone activity","type":"narrow"},{"name":"inhibition of GH activity","type":"narrow"},{"name":"inhibition of growth hormone activity","type":"narrow"},{"name":"inhibition of pituitary growth hormone activity","type":"narrow"},{"name":"inhibition of placental growth hormone activity","type":"narrow"},{"name":"negative regulation of GH activity","type":"exact"},{"name":"negative regulation of pituitary growth hormone activity","type":"narrow"},{"name":"negative regulation of placental growth hormone activity","type":"narrow"}],"termid":"GO:1903548"}


id: PBO:0031435
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K14_acetylation","termid":"PBO:0031435"}


id: GO:0047713
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: galactitol + NAD+ = D-tagatose + H+ + NADH.","definition_xrefs":["EC:1.1.1.16","RHEA:20685"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"},{"relation_name":"is_a","term_name":"hexitol dehydrogenase activity","termid":"GO:0031320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"galactitol 2-dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R02928","MetaCyc:GALACTITOL-2-DEHYDROGENASE-RXN"],"termid":"GO:0047713"}


id: GO:0004306
data:
  {"annotated_genes":["SJAG_04628"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[85561],"is_not":false,"summary":null,"term":"GO:0004306"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: CTP + ethanolamine phosphate = diphosphate + CDP-ethanolamine.","definition_xrefs":["EC:2.7.7.14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytidylyltransferase activity","termid":"GO:0070567"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04628":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016779","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"ethanolamine-phosphate cytidylyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:2.7.7.14-RXN","Reactome:R-HSA-1483190","RHEA:24592"],"synonyms":[{"name":"CTP-phosphoethanolamine cytidylyltransferase activity","type":"related"},{"name":"CTP:ethanolamine-phosphate cytidylyltransferase activity","type":"exact"},{"name":"CTP:phosphoethanolamine cytidylyltransferase activity","type":"related"},{"name":"ET","type":"related"},{"name":"ethanolamine phosphate cytidylyltransferase activity","type":"related"},{"name":"phosphoethanolamine cytidylyltransferase activity","type":"exact"},{"name":"phosphorylethanolamine transferase activity","type":"broad"}],"termid":"GO:0004306","terms_by_termid":{"GO:0004306":null}}


id: FYPO:0005895
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to centromeric chromatin is decreased during G1 phase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to chromatin during mitotic G1 phase","termid":"FYPO:0005896"},{"relation_name":"is_a","term_name":"decreased protein localization to centromeric chromatin during vegetative growth","termid":"FYPO:0006599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein localization to centromeric chromatin during mitotic G1 phase","synonyms":[{"name":"decreased protein localisation to centromeric chromatin during mitotic G1 phase","type":"exact"},{"name":"decreased protein localization to centromeric chromatin during G1 phase during vegetative growth","type":"exact"},{"name":"decreased protein localization to centromeric chromatin during G1 phase of mitotic cell cycle","type":"related"},{"name":"reduced protein localization to centromeric chromatin during mitotic G1 phase","type":"exact"}],"termid":"FYPO:0005895"}


id: PBO:0055495
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2929","termid":"PBO:0055495"}


id: PBO:0087895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription factor; activated by proteolytic processing in response to signals from the SPS sensor system for external amino acids; activates transcription of amino acid permease genes; STP2 has a paralog, STP1, that arose from the whole genome duplication","termid":"PBO:0087895"}


id: PBO:0080603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 37","termid":"PBO:0080603"}


id: PBO:0027578
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_transposon-derived_cDNA_recombination","termid":"PBO:0027578"}


id: PBO:0066811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 110","termid":"PBO:0066811"}


id: PBO:0047893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(6)(q15)","termid":"PBO:0047893"}


id: PBO:0000439
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.12.1","termid":"PBO:0000439"}


id: PBO:0054209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1589","termid":"PBO:0054209"}


id: PBO:0003066
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.1.1.22","termid":"PBO:0003066"}


id: PATO:0002279
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's being strongly articulated with another entity.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"articulated with","termid":"PATO:0002278"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tightly articulated with","termid":"PATO:0002279"}


id: PBO:0042938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondroadherin like","termid":"PBO:0042938"}


id: PBO:0029843
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_acetylation","termid":"PBO:0029843"}


id: PBO:0013817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S acidic ribosomal protein A4","termid":"PBO:0013817"}


id: PATO:0001229
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color saturation which is of high purity.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"color saturation","termid":"PATO:0000017"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high saturation","synonyms":[{"name":"bright ","type":"exact"},{"name":"vivid","type":"related"}],"termid":"PATO:0001229"}


id: GO:0042852
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of L-alanine, the L-enantiomer of 2-aminopropanoic acid, i.e. (2S)-2-aminopropanoic acid.","definition_xrefs":["GOC:jsg","GOC:mah","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alanine biosynthetic process","termid":"GO:0006523"},{"relation_name":"is_a","term_name":"pyruvate family amino acid biosynthetic process","termid":"GO:0009079"},{"relation_name":"is_a","term_name":"L-alanine metabolic process","termid":"GO:0042851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"L-alanine biosynthetic process","synonyms":[{"name":"L-alanine anabolism","type":"exact"},{"name":"L-alanine biosynthesis","type":"exact"},{"name":"L-alanine formation","type":"exact"},{"name":"L-alanine synthesis","type":"exact"}],"termid":"GO:0042852"}


id: GO:0032109
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of a response to nutrient levels.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to nutrient levels","termid":"GO:0032107"},{"relation_name":"is_a","term_name":"positive regulation of response to stimulus","termid":"GO:0048584"},{"relation_name":"positively_regulates","term_name":"response to nutrient levels","termid":"GO:0031667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to nutrient levels","synonyms":[{"name":"activation of response to nutrient levels","type":"narrow"},{"name":"stimulation of response to nutrient levels","type":"narrow"},{"name":"up regulation of response to nutrient levels","type":"exact"},{"name":"up-regulation of response to nutrient levels","type":"exact"},{"name":"upregulation of response to nutrient levels","type":"exact"}],"termid":"GO:0032109"}


id: PBO:0038749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin related protein 1A","termid":"PBO:0038749"}


id: GO:0031707
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an endothelin A receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bombesin receptor binding","termid":"GO:0031705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"endothelin A receptor binding","synonyms":[{"name":"endothelin A receptor ligand","type":"narrow"},{"name":"endothelin-1 receptor binding","type":"exact"}],"termid":"GO:0031707"}


id: GO:1903419
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a cortical endoplasmic reticulum.","definition_xrefs":["GO_REF:0000087","GOC:TermGenie","PMID:25103238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to cell cortex","termid":"GO:0072697"},{"relation_name":"is_a","term_name":"protein localization to endoplasmic reticulum tubular network","termid":"GO:1903420"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to cortical endoplasmic reticulum","synonyms":[{"name":"protein localisation in cortical endoplasmic reticulum","type":"exact"},{"name":"protein localisation to cortical endoplasmic reticulum","type":"exact"},{"name":"protein localization in cortical endoplasmic reticulum","type":"exact"},{"name":"protein localization to cortical ER","type":"exact"}],"termid":"GO:1903419"}


id: GO:0042636
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the cyclical phases of growth (anagen), regression (catagen), quiescence (telogen), and shedding (exogen) in the life of a hair.","definition_xrefs":["GOC:go_curators","PMID:12230507"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hair cycle","termid":"GO:0042634"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"negatively_regulates","term_name":"hair cycle","termid":"GO:0042633"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of hair cycle","synonyms":[{"name":"down regulation of hair cycle","type":"exact"},{"name":"down-regulation of hair cycle","type":"exact"},{"name":"downregulation of hair cycle","type":"exact"},{"name":"inhibition of hair cycle","type":"narrow"}],"termid":"GO:0042636"}


id: PBO:0051346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 2D-29","termid":"PBO:0051346"}


id: PBO:0078709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon CAG) 1-4","termid":"PBO:0078709"}


id: PBO:0082904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cystathionine beta-synthase; catalyzes synthesis of cystathionine from serine and homocysteine, the first committed step in cysteine biosynthesis; responsible for hydrogen sulfide generation; advances passage through START by promoting cell growth which requires catalytic activity, and reducing critical cell size independent of catalytic activity; mutations in human ortholog CBS cause homocystinuria; human CBS can complement yeast null mutant","termid":"PBO:0082904"}


id: FYPO:0002193
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is inviable, contains one or more septa, is shaped in the form of a spheroid, and has a normal volume.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"normal volume vegetative cell","termid":"FYPO:0000926"},{"relation_name":"has_part","term_name":"spheroid cell","termid":"FYPO:0001955"},{"relation_name":"has_part","term_name":"septated vegetative cell","termid":"FYPO:0002342"},{"relation_name":"is_a","term_name":"normal volume vegetative cell","termid":"FYPO:0000926"},{"relation_name":"is_a","term_name":"inviable vegetative cell, abnormal cell shape, normal cell size","termid":"FYPO:0001511"},{"relation_name":"is_a","term_name":"spheroid cell","termid":"FYPO:0001955"},{"relation_name":"is_a","term_name":"septated vegetative cell","termid":"FYPO:0002342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000257"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000004","FYPO:0001985","FYPO:0001312","FYPO:0000257","FYPO:0000005","FYPO:0001320"],"is_obsolete":false,"name":"inviable normal volume septated spheroid vegetative cell","synonyms":[{"name":"inviable normal volume septated rounded vegetative cell","type":"related"},{"name":"inviable normal volume septated spheroid cell during vegetative growth","type":"exact"},{"name":"inviable normal volume septated spheroid vegetative cell during mitotic cell cycle","type":"related"},{"name":"lethal; normal volume septated spheroid vegetative cell","type":"exact"}],"termid":"FYPO:0002193"}


id: FYPO:0000619
data:
  {"alleles_by_uniquename":{"SJAG_00871:allele-1":{"allele_type":"amino_acid_mutation","description":"cut3-T19E","gene_uniquename":"SJAG_00871","name":"cut3-T19E","uniquename":"SJAG_00871:allele-1"},"SJAG_04284:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04284","name":"nup61delta","uniquename":"SJAG_04284:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115616],"is_not":false,"summary":null,"term":"FYPO:0000619"}],"single_locus_phenotype":[{"annotations":[115617],"is_not":false,"summary":null,"term":"FYPO:0000619"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the mitotic cell cycle is arrested in anaphase under conditions where arrest does not normally occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell cycle arrest in mitotic M phase","termid":"FYPO:0000608"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00871":null,"SJAG_04284":null,"SJAG_04464":null},"genotype_count":2,"genotypes_by_uniquename":{"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"nup61delta":{"display_name":"nup61delta","display_uniquename":"nup61delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04284:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_00871","SJAG_04464"],"name":"abnormal cell cycle arrest in mitotic anaphase","references_by_uniquename":{"PMID:28954740":null},"single_locus_annotated_genes":["SJAG_04284"],"single_locus_genotype_uniquenames":["nup61delta"],"synonyms":[{"name":"abnormal cell cycle arrest in anaphase during mitotic cell cycle","type":"exact"},{"name":"abnormal cell cycle arrest in mitotic anaphase during vegetative growth","type":"exact"},{"name":"abnormal cell cycle arrest in mitotic anaphase with condensed chromosomes","type":"exact"},{"name":"abnormal mitotic cell cycle arrest in anaphase","type":"exact"},{"name":"mitotic cell cycle progression in late anaphase: arrested","type":"narrow"}],"termid":"FYPO:0000619","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0000619":null,"FYPO_EXT:0000001":null}}


id: PBO:0061358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophosmin 1 pseudogene 18","termid":"PBO:0061358"}


id: PBO:0050235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 13","termid":"PBO:0050235"}


id: GO:0071163
data:
  {"annotated_genes":["SJAG_04879","SJAG_00327","SJAG_02908","SJAG_01823","SJAG_02667","SJAG_04995","SJAG_02607"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103476,106077,109694,111511],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140529"},{"annotations":[106694,95549,86609],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902977"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form the DNA replication preinitiation complex, a protein-DNA complex that is assembled at DNA replication origins as part of initiation of DNA replication. The complex consists of proteins that initiate the DNA binding, melt the helix and enable helicase activity.","definition_xrefs":["GOC:mah","PMID:28209641"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"is_a","term_name":"protein-DNA complex assembly","termid":"GO:0065004"},{"relation_name":"part_of","term_name":"nuclear DNA replication","termid":"GO:0033260"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00327":null,"SJAG_01823":null,"SJAG_02607":null,"SJAG_02667":null,"SJAG_02908":null,"SJAG_04879":null,"SJAG_04995":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0007049","GO:0065003","GO:0006260","GO:0044085"],"is_obsolete":false,"name":"DNA replication preinitiation complex assembly","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1902316","GO:1902293"],"synonyms":[{"name":"DNA replication preinitiation complex formation","type":"exact"},{"name":"pre-IC complex assembly","type":"exact"}],"termid":"GO:0071163","terms_by_termid":{"GO:0140529":null,"GO:1902977":null}}


id: PBO:0030478
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_glutamine_level","termid":"PBO:0030478"}


id: GO:0046328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of signal transduction mediated by the JNK cascade.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of MAPK cascade","termid":"GO:0043408"},{"relation_name":"regulates","term_name":"JNK cascade","termid":"GO:0007254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of JNK cascade","synonyms":[{"name":"regulation of SAPK cascade","type":"broad"}],"termid":"GO:0046328"}


id: PBO:0060450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-N-acetylgalactosaminidase","termid":"PBO:0060450"}


id: GO:0002330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process leading up to expression of the pre-B cell receptor on the surface of pre-B cells, starting with the recombination of an immunuglobulin heavy chain locus, including expression of the surrogate light chain, the association of the surrogate light chain with the heavy chain, and expression of the complete pre-B cell receptor on the cell surface. pre-B cell receptor expression is a key checkpoint in the transition of pro-B cell to pre-B cell.","definition_xrefs":["GOC:add","PMID:22949502","GOC:jal","PMID:9834086","PMID:15263090"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular developmental process","termid":"GO:0048869"},{"relation_name":"part_of","term_name":"pre-B cell differentiation","termid":"GO:0002329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pre-B cell receptor expression","termid":"GO:0002330"}


id: GO:0035984
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trichostatin A stimulus.","definition_xrefs":["GOC:yaf","PMID:20181743"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to trichostatin A","termid":"GO:0035983"},{"relation_name":"is_a","term_name":"cellular response to antibiotic","termid":"GO:0071236"},{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"cellular response to organonitrogen compound","termid":"GO:0071417"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to trichostatin A","termid":"GO:0035984"}


id: GO:0019815
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An immunoglobulin complex that is present in the plasma membrane of B cells and that in its canonical form is composed of two identical immunoglobulin heavy chains and two identical immunoglobulin light chains and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin complex","termid":"GO:0019814"},{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005886"],"is_obsolete":false,"name":"B cell receptor complex","secondary_identifiers":["GO:0042570"],"synonyms":[{"name":"B cell receptor accessory molecule complex","type":"related"},{"name":"B lymphocyte receptor complex","type":"exact"},{"name":"B-cell receptor complex","type":"exact"},{"name":"B-lymphocyte receptor complex","type":"exact"},{"name":"BCR complex","type":"exact"},{"name":"antibody","type":"related"},{"name":"immunoglobulin complex, membrane bound","type":"exact"}],"termid":"GO:0019815"}


id: PBO:0066421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RALBP1 associated Eps domain containing 1","termid":"PBO:0066421"}


id: GO:0048566
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"digestive tract development","termid":"GO:0048565"},{"relation_name":"is_a","term_name":"embryonic organ development","termid":"GO:0048568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic digestive tract development","termid":"GO:0048566"}


id: PBO:0045541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydrouridine synthase 1 like","termid":"PBO:0045541"}


id: GO:0015942
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving formate, also known as methanoate, the anion HCOO- derived from methanoic (formic) acid.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"formate metabolic process","synonyms":[{"name":"formate metabolism","type":"exact"}],"termid":"GO:0015942"}


id: GO:0050940
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of late stripe melanocyte differentiation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of melanocyte differentiation","termid":"GO:0045634"},{"relation_name":"regulates","term_name":"late stripe melanocyte differentiation","termid":"GO:0050934"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of late stripe melanocyte differentiation","synonyms":[{"name":"regulation of late stripe melanophore differentiation","type":"exact"}],"termid":"GO:0050940"}


id: PBO:0063105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PARK7 pseudogene 1","termid":"PBO:0063105"}


id: GO:0051318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle 'gap' phase which is the interval between the completion of DNA segregation (usually by mitosis or meiosis) and the beginning of DNA synthesis.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle phase","termid":"GO:0022403"},{"relation_name":"part_of","term_name":"interphase","termid":"GO:0051325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"G1 phase","secondary_identifiers":["Wikipedia:G1_phase"],"termid":"GO:0051318"}


id: PBO:0090853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF1688 family fungal conserved protein, implicated in uracil or riboflavin metabolism","termid":"PBO:0090853"}


id: PBO:0085580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in 5' RNA end processing; substrates include mitochondrial COB, 15S_rRNA, and RPM1 transcripts; may also have a role in 3' end processing of the COB pre-mRNA; displays genetic interaction with cell cycle-regulated kinase Dbf2p","termid":"PBO:0085580"}


id: PBO:0084336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kinetochore-associated protein; required for chromosome segregation and kinetochore clustering; required for normal segregation of chromosomes in meiosis and mitosis; component of the FEAR regulatory network, which promotes Cdc14p release from the nucleolus during anaphase; potential Cdc28p substrate","termid":"PBO:0084336"}


id: GO:1990260
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter using a mechanism that involves the localization of a transcription factor and initiated in response to the DNA damage checkpoint signaling.","definition_xrefs":["PMID:24006488"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transcription from RNA polymerase II promoter by transcription factor localization involved in response to DNA damage checkpoint signaling (obsolete GO:1990260)","termid":"GO:1990260"}


id: GO:0018391
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The ATP-dependent addition of a tyrosine residue to a glutamic acid residue at the C-terminus of a protein.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete C-terminal peptidyl-glutamic acid tyrosinylation (obsolete GO:0018391)","termid":"GO:0018391"}


id: PBO:0043287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-type lectin domain containing 5A","termid":"PBO:0043287"}


id: GO:2000957
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cyclodextrin catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of carbohydrate catabolic process","termid":"GO:0043470"},{"relation_name":"is_a","term_name":"regulation of cyclodextrin metabolic process","termid":"GO:2000954"},{"relation_name":"regulates","term_name":"cyclodextrin catabolic process","termid":"GO:2000901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"regulation of cyclodextrin catabolic process","synonyms":[{"name":"regulation of cyclodextrin catabolism","type":"exact"}],"termid":"GO:2000957"}


id: PBO:0000129
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence error in genomic data","termid":"PBO:0000129"}


id: MOD:00224
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-aspartic acid residue to 1-chondroitin sulfate-L-aspartic acid ester","definition_xrefs":["PubMed:1898736","RESID:AA0219"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-aspartic acid residue","termid":"MOD:00904"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-chondroitin sulfate-L-aspartic acid ester","synonyms":[{"name":"1-aspartic acid ester with 6-chondroitin 4-sulfate","type":"exact"},{"name":"1-chondroitin sulfate-L-aspartic acid ester","type":"exact"},{"name":"MOD_RES Aspartate 1-(chondroitin 4-sulfate)-ester","type":"exact"},{"name":"poly[beta-1,4-D-glucopyranuronosyl-beta-1,3-(2-acetamido-2-deoxy-4-sulfate D-galactosyl)]beta-1,4-D-glucopyranuronosyl-beta-1,3-(2-acetamido-2-deoxy-4-sulfate-6-(1-L-aspartyl)-D-galactose)","type":"exact"},{"name":"protein-glycosaminoglycan-protein cross-link","type":"exact"}],"termid":"MOD:00224"}


id: PBO:0066819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 118","termid":"PBO:0066819"}


id: GO:0006886
data:
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id: GO:0036520
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id: PBO:0082253
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id: FYPO:0001056
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id: GO:0062192
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id: PATO:0000152
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id: PBO:0068008
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id: FYPO:0007003
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id: PBO:0034395
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id: PBO:0058206
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id: GO:0002540
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id: PBO:0045597
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 8 (pseudogene)","termid":"PBO:0045597"}


id: GO:1904823
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id: PBO:0060607
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NCBP2 antisense RNA 1","termid":"PBO:0060607"}


id: GO:0102151
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id: GO:0003099
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id: PBO:0047535
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id: GO:0009844
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The physiological and developmental changes by a seed, spore, pollen grain (microspore), or zygote that occur after release from dormancy, and encompassing events prior to and including the first visible indications of growth.","definition_xrefs":["GOC:lr"],"gene_count":0,"genotype_count":0,"name":"obsolete germination (obsolete GO:0009844)","synonyms":[{"name":"germination","type":"exact"}],"termid":"GO:0009844"}


id: PBO:0040759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BEAN1 antisense RNA 1","termid":"PBO:0040759"}


id: FYPO:0003507
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing zinc ions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0002058","FYPO:0002060","FYPO:0000139","FYPO:0000257","FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"normal growth on zinc","synonyms":[{"name":"normal cell population growth in presence of zinc","type":"exact"},{"name":"normal cell population growth on zinc","type":"exact"},{"name":"normal cell population growth on zinc ion","type":"exact"},{"name":"normal cellular response to zinc","type":"related"},{"name":"normal growth on zinc ions","type":"exact"},{"name":"normal vegetative cell population growth on zinc","type":"exact"}],"termid":"FYPO:0003507"}


id: GO:0006066
data:
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chemical reactions and pathways involving alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small molecule metabolic process","termid":"GO:0044281"},{"relation_name":"is_a","term_name":"organic hydroxy compound metabolic 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id: PBO:0110979
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD44 molecule (IN blood group)","termid":"PBO:0110979"}


id: PBO:0052516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 30","termid":"PBO:0052516"}


id: GO:0060016
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a granulosa cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a granulosa cell fate.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell development","termid":"GO:0002064"},{"relation_name":"part_of","term_name":"granulosa cell differentiation","termid":"GO:0060014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"granulosa cell development","termid":"GO:0060016"}


id: PR:O74781
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An arginine--tRNA ligase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03348","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginine--tRNA ligase, cytoplasmic (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC25B2.09c","secondary_identifiers":["UniProtKB:O74781"],"synonyms":[{"name":"ArgRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-RARS2","type":"exact"},{"name":"arginyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74781"}


id: PBO:0055143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2562","termid":"PBO:0055143"}


id: PBO:0077536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 248 pseudogene 1","termid":"PBO:0077536"}


id: PBO:0028359
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_ATPase_activity","termid":"PBO:0028359"}


id: MOD:00208
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-tyrosine residue and 5'-phosphoadenosine through a phosphodiester bond to form O4'-(phospho-5'-adenosine)-L-tyrosine.","definition_xrefs":["PubMed:5543675","RESID:AA0203","DeltaMass:0","Unimod:405#Y"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"},{"relation_name":"is_a","term_name":"adenylated residue","termid":"MOD:01165"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O4'-(phospho-5'-adenosine)-L-tyrosine","synonyms":[{"name":"(2S)-2-amino-3-[4-(5'-adenosine phosphonoxy)phenyl]propanoic acid","type":"exact"},{"name":"5'-adenylic-O-tyrosine","type":"exact"},{"name":"AMP binding site","type":"related"},{"name":"MOD_RES O-AMP-tyrosine","type":"exact"},{"name":"O-5'-Adenosylation ( of Tyrosine)","type":"exact"},{"name":"O4'-(phospho-5'-adenosine)-L-tyrosine","type":"exact"},{"name":"O4'-L-tyrosine 5'-adenosine phosphodiester","type":"exact"},{"name":"OAMPTyr","type":"exact"},{"name":"Phosphoadenosine","type":"related"},{"name":"hydrogen 5'-adenylate tyrosine ester","type":"exact"}],"termid":"MOD:00208"}


id: GO:0036187
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell switches from growing as a round budding cell to growing as a filament (elongated cells attached end-to-end). An example of this is the yeast-hyphal transition of Candida albicans.","definition_xrefs":["GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of growth of unicellular organism as a thread of attached cells","termid":"GO:0070784"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell growth mode switching, budding to filamentous","synonyms":[{"name":"yeast to hyphal transition","type":"related"}],"termid":"GO:0036187"}


id: PBO:0077155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TLCD4-RWDD3 readthrough","termid":"PBO:0077155"}


id: GO:0006370
data:
  {"annotated_genes":["SJAG_01724","SJAG_04488","SJAG_04034","SJAG_01713"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95109,103829,104351,112862],"is_not":false,"summary":null,"term":"GO:0006370"}]},"cv_name":"biological_process","definition":"The sequence of enzymatic reactions by which the mRNA 5' cap structure, an inverted 7-methylguanosine linked via a 5'-5' triphosphate bridge (m7G(5')ppp(5')X) to the first transcribed residue, is added to a nascent transcript. Additional methylation can occur on the ribose sugars of the first and second nucleotides adjacent to the m7G nRNA cap. These methylations are often referred to as N6,2'-O-dimethyladenosine (m6,2A) and N6,2'-O-dimethylguanosine (m6,2G), respectively.","definition_xrefs":["GOC:mah","PMID:9266685"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA processing","termid":"GO:0006397"},{"relation_name":"is_a","term_name":"7-methylguanosine RNA capping","termid":"GO:0009452"},{"relation_name":"is_a","term_name":"nucleic acid biosynthetic process","termid":"GO:0141187"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01713":null,"SJAG_01724":null,"SJAG_04034":null,"SJAG_04488":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0016071","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"7-methylguanosine mRNA capping","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"5' end capping","type":"broad"},{"name":"5' mRNA capping","type":"exact"},{"name":"5'-end mRNA processing","type":"exact"},{"name":"5'-end processing","type":"broad"},{"name":"mRNA capping","type":"exact"}],"termid":"GO:0006370","terms_by_termid":{"GO:0006370":null}}


id: PBO:0059959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND3 pseudogene 4","termid":"PBO:0059959"}


id: PBO:0082391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Beta regulatory subunit of casein kinase 2 (CK2); a Ser/Thr protein kinase with roles in cell growth and proliferation; CK2, comprised of CKA1, CKA2, CKB1 and CKB2, has many substrates including transcription factors and all RNA polymerases","termid":"PBO:0082391"}


id: PBO:0047061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 120A opposite strand","termid":"PBO:0047061"}


id: GO:0052230
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of the directed movement of substances within the cell or cells of a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation of intracellular transport in other organism involved in symbiotic interaction (obsolete GO:0052230)","synonyms":[{"name":"modulation of intracellular trafficking in other organism","type":"exact"},{"name":"modulation of intracellular transport in other organism during symbiotic interaction","type":"related"}],"termid":"GO:0052230"}


id: GO:0097579
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of binding or confining copper ions in an extracellular area such that they are separated from other components of a biological system.","definition_xrefs":["PMID:3099306","GOC:mr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sequestering of copper ion","termid":"GO:0097578"},{"relation_name":"part_of","term_name":"intracellular copper ion homeostasis","termid":"GO:0006878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0098771"},{"rel_name":"is_a","termid":"GO:0098771"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0098771"],"is_obsolete":false,"name":"extracellular sequestering of copper ion","synonyms":[{"name":"extracellular copper ion retention","type":"exact"},{"name":"extracellular copper ion sequestering","type":"exact"},{"name":"extracellular copper ion sequestration","type":"exact"},{"name":"extracellular copper ion storage","type":"exact"},{"name":"extracellular retention of copper ion","type":"exact"},{"name":"extracellular sequestration of copper ion","type":"exact"},{"name":"extracellular storage of copper ion","type":"exact"}],"termid":"GO:0097579"}


id: GO:0046385
data:
  {"annotated_genes":["SJAG_04627","SJAG_03771","SJAG_04487","SJAG_04657","SJAG_02948","SJAG_00885","SJAG_02874","SJAG_04665"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70947],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009265"},{"annotations":[88582,91629,103390],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006240"},{"annotations":[114098],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006233"},{"annotations":[85552,104508],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006231"},{"annotations":[85553,88583,114099],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006235"},{"annotations":[114100],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006227"},{"annotations":[104509,95116],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006226"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of deoxyribose phosphate, the phosphorylated sugar 2-deoxy-erythro-pentose.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deoxyribose phosphate metabolic process","termid":"GO:0019692"},{"relation_name":"is_a","term_name":"organophosphate biosynthetic process","termid":"GO:0090407"},{"relation_name":"is_a","term_name":"carbohydrate derivative biosynthetic process","termid":"GO:1901137"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00885":null,"SJAG_02874":null,"SJAG_02948":null,"SJAG_03771":null,"SJAG_04487":null,"SJAG_04627":null,"SJAG_04657":null,"SJAG_04665":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"deoxyribose phosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"deoxyribose phosphate anabolism","type":"exact"},{"name":"deoxyribose phosphate biosynthesis","type":"exact"},{"name":"deoxyribose phosphate formation","type":"exact"},{"name":"deoxyribose phosphate synthesis","type":"exact"}],"termid":"GO:0046385","terms_by_termid":{"GO:0006226":null,"GO:0006227":null,"GO:0006231":null,"GO:0006233":null,"GO:0006235":null,"GO:0006240":null,"GO:0009265":null}}


id: PBO:0077969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (AGC) 21-1","termid":"PBO:0077969"}


id: GO:0007221
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The activation of transcription of specific genes as a result of Notch signaling, mediated by the Notch intracellular domain.","definition_xrefs":["PMID:12651094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transcription by RNA polymerase II","termid":"GO:0045944"},{"relation_name":"part_of","term_name":"Notch signaling pathway","termid":"GO:0007219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0010467","GO:0006355","GO:0006351","GO:0008150"],"is_obsolete":false,"name":"positive regulation of transcription of Notch receptor target","synonyms":[{"name":"N receptor target transcription factor activation","type":"related"},{"name":"Notch receptor target transcription factor activation","type":"related"}],"termid":"GO:0007221"}


id: FYPO:0000276
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the mitotic spindle forms with microtubules emanating from only one pole.","definition_xrefs":["PMID:11792803","PomBase:mah","PMID:9763447"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle","termid":"FYPO:0000338"},{"relation_name":"output_of","term_name":"abolished mitotic spindle midzone assembly","termid":"FYPO:0005344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0000641"}],"interesting_parent_ids":["FYPO:0000337","FYPO:0000120","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000641","FYPO:0002399","FYPO:0000054","FYPO:0000631"],"is_obsolete":false,"name":"monopolar mitotic spindle","synonyms":[{"name":"V-shaped mitotic spindle","type":"related"},{"name":"fan-shaped mitotic spindle","type":"exact"},{"name":"monopolar mitotic spindle during vegetative growth","type":"exact"},{"name":"monopolar spindle during mitosis","type":"exact"},{"name":"monopolar spindle during mitotic cell cycle","type":"exact"},{"name":"spindle defects, monopolar mitotic spindle","type":"exact"},{"name":"spindle defects, monopolar spindle","type":"exact"}],"termid":"FYPO:0000276"}


id: GO:0022609
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of a multicellular organism to a surface or material.","definition_xrefs":["GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organism adhesion","termid":"GO:0022608"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"multicellular organism adhesion to substrate","termid":"GO:0022609"}


id: PBO:0003492
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"focus formation at heterochromatic regions, Swi2_dependent","termid":"PBO:0003492"}


id: PR:P40377
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA replication licensing factor MCM2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02759","PANTHER:PTHR11630:SF44"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication licensing factor mcm2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4.04c","secondary_identifiers":["UniProtKB:P40377"],"synonyms":[{"name":"Spom972h-MCM2","type":"exact"},{"name":"cell division control protein 19 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"minichromosome maintenance protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P40377"}


id: GO:0014064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the regulated release of serotonin.","definition_xrefs":["GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of serotonin secretion","termid":"GO:0014062"},{"relation_name":"is_a","term_name":"positive regulation of monoatomic ion transport","termid":"GO:0043270"},{"relation_name":"is_a","term_name":"positive regulation of secretion by cell","termid":"GO:1903532"},{"relation_name":"positively_regulates","term_name":"serotonin secretion","termid":"GO:0001820"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of serotonin secretion","synonyms":[{"name":"activation of serotonin secretion","type":"narrow"},{"name":"positive regulation of serotonin release","type":"related"},{"name":"stimulation of serotonin secretion","type":"narrow"},{"name":"up regulation of serotonin secretion","type":"exact"},{"name":"up-regulation of serotonin secretion","type":"exact"},{"name":"upregulation of serotonin secretion","type":"exact"}],"termid":"GO:0014064"}


id: PBO:0046005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EIF1B antisense RNA 1","termid":"PBO:0046005"}


id: PBO:0082342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DNA helicase, also known as pontin; member of the AAA+ and RuvB-like protein families; similar to Rvb2p; conserved component of multiple complexes including the INO80 complex, the Swr1 complex, and the R2TP complex (Rvb1-Rvb2-Tah1-Pih1); involved in multiple processes such as chromatin remodeling, box C/D snoRNP assembly, and RNA polymerase II assembly","termid":"PBO:0082342"}


id: PBO:0075622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sprouty related EVH1 domain containing 3","termid":"PBO:0075622"}


id: GO:0070515
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphaIIb-beta3 integrin complex bound to talin.","definition_xrefs":["PMID:8663236"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"alphaIIb-beta3 integrin-talin complex","synonyms":[{"name":"ITGA2b-ITGB3-TLN1 complex","type":"narrow"}],"termid":"GO:0070515"}


id: GO:0001530
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a lipopolysaccharide.","definition_xrefs":["PMID:11079463"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid binding","termid":"GO:0008289"},{"relation_name":"is_a","term_name":"carbohydrate derivative binding","termid":"GO:0097367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0008289","GO:0003674"],"is_obsolete":false,"name":"lipopolysaccharide binding","synonyms":[{"name":"LPS binding","type":"exact"},{"name":"endotoxin binding","type":"broad"}],"termid":"GO:0001530"}


id: PBO:0071865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 3","termid":"PBO:0071865"}


id: PBO:0045533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deltex E3 ubiquitin ligase 3L","termid":"PBO:0045533"}


id: PBO:0064262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology domain containing B1","termid":"PBO:0064262"}


id: PBO:0038933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alcohol dehydrogenase 1A (class I), alpha polypeptide","termid":"PBO:0038933"}


id: GO:0018866
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving adamantanone, tricyclo(3.3.1.13,7)decanone, a white crystalline solid used as an intermediate for microelectronics in the production of photoresists.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic metabolic process","termid":"GO:0006805"},{"relation_name":"is_a","term_name":"cellular ketone metabolic process","termid":"GO:0042180"},{"relation_name":"is_a","term_name":"organic cyclic compound metabolic process","termid":"GO:1901360"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"adamantanone metabolic process","secondary_identifiers":["UM-BBD_pathwayID:ada"],"synonyms":[{"name":"adamantanone metabolism","type":"exact"}],"termid":"GO:0018866"}


id: PBO:0072271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S23","termid":"PBO:0072271"}


id: PBO:0077891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TP53RK binding protein","termid":"PBO:0077891"}


id: FYPO:0007515
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which RNA stability is decreased during a cellular response to oxidative stress. RNA molecules are more likely to degrade over a given time period than in wild type. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected.","definition_xrefs":["PMID:14633985","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal RNA stability","termid":"FYPO:0003038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased RNA stability during cellular response to oxidative stress","synonyms":[{"name":"decreased RNA stability during cellular response to oxidative stress during mitotic cell cycle","type":"related"},{"name":"decreased RNA stability during cellular response to oxidative stress during vegetative growth","type":"exact"},{"name":"decreased RNA stability in response to oxidative stress","type":"exact"},{"name":"reduced RNA stability during cellular response to oxidative stress","type":"exact"}],"termid":"FYPO:0007515"}


id: GO:0160175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process in which a somatic muscle attaches to the chitin-based cuticle. In insects, this may occur via a specialized epithelial cell adherence to the chitinous extracellular matrix and to muscle cells through their basement membrane.","definition_xrefs":["PMID:35675426"],"direct_ancestors":[{"relation_name":"is_a","term_name":"somatic muscle development","termid":"GO:0007525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"somatic muscle attachment to chitin-based cuticle","termid":"GO:0160175"}


id: PATO:0002127
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A hardness quality of being rigid and resistant to pressure and fibrous.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hard","termid":"PATO:0000386"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scirrhous","termid":"PATO:0002127"}


id: GO:0000299
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes.","definition_xrefs":["PMID:10512869"],"gene_count":0,"genotype_count":0,"name":"obsolete integral to membrane of membrane fraction (obsolete GO:0000299)","synonyms":[{"name":"integral to membrane of membrane fraction","type":"exact"}],"termid":"GO:0000299"}


id: PR:G2TRM6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- new4 gene.","definition_xrefs":["UniProtKB:G2TRM6","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein new4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H5.13","synonyms":[{"name":"Spom972h-new4","type":"exact"}],"termid":"PR:G2TRM6"}


id: GO:0050399
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5,12-dihydroxanthommatin + NAD+ = H+ + NADH + xanthommatin.","definition_xrefs":["EC:1.3.1.41","RHEA:13417"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"xanthommatin reductase activity","secondary_identifiers":["KEGG_REACTION:R03787","MetaCyc:XANTHOMMATIN-REDUCTASE-RXN"],"synonyms":[{"name":"5,12-dihydroxanthommatin:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0050399"}


id: FYPO:0006896
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of mitochondria to the cell tip is decreased during one or both meiotic nuclear divisions.","definition_xrefs":["PMID:30649994","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during meiosis","termid":"FYPO:0003549"},{"relation_name":"is_a","term_name":"abnormal protein localization to cell tip","termid":"FYPO:0005987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"decreased mitochondrion localization to cell tip during meiosis","synonyms":[{"name":"decreased mitochondrial localization to cell tip during meiosis","type":"exact"},{"name":"decreased mitochondrion localisation to cell tip during meiosis","type":"exact"},{"name":"decreased mitochondrion localization to cell end during meiosis","type":"exact"},{"name":"decreased mitochondrion localization to cell tip during meiotic nuclear division","type":"exact"},{"name":"reduced mitochondrion localization to cell tip during meiosis","type":"exact"}],"termid":"FYPO:0006896"}


id: GO:0042785
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any mechanism of active immune avoidance which works by regulating host cytokine networks, e.g. by secreting proteins that mimic cytokine receptors that act to sequester host cytokines and inhibit action. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:10620615","PMID:9275219","PMID:9600978"],"gene_count":0,"genotype_count":0,"name":"obsolete evasion of host immune response via modulation of host cytokine network (obsolete GO:0042785)","synonyms":[{"name":"active evasion of host immune response via regulation of host cytokine network","type":"related"},{"name":"active evasion of immune response of other organism via regulation of cytokine network of other organism involved in symbiotic interaction","type":"broad"},{"name":"active immune evasion via modulation of host cytokine network","type":"exact"},{"name":"active immune evasion via regulation of host cytokine network","type":"exact"},{"name":"evasion of host immune response via regulation of host cytokine network","type":"exact"}],"termid":"GO:0042785"}


id: GO:0044159
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A membranous cellular structure within the host cell that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the host plasma membrane. In eukaryotic host cells they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host intracellular organelle","termid":"GO:0033647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host thylakoid","termid":"GO:0044159"}


id: PBO:0040109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with SH3 domain, ankyrin repeat and PH domain 1","termid":"PBO:0040109"}


id: GO:0018159
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The oxidation of peptidyl-L-methionine to peptidyl-L-methionine sulfone.","definition_xrefs":["RESID:AA0251"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein oxidation","termid":"GO:0018158"},{"relation_name":"is_a","term_name":"peptidyl-methionine modification","termid":"GO:0018206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-methionine oxidation","termid":"GO:0018159"}


id: GO:0038156
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by interleukin-3 binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:signaling","GOC:nhn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"interleukin-3-mediated signaling pathway","synonyms":[{"name":"IL-3-mediated signaling pathway","type":"exact"},{"name":"interleukin-3-mediated signalling pathway","type":"exact"}],"termid":"GO:0038156"}


id: PBO:0036189
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mitotic_spindle_elongation_without_chromosome_separation_with_centromeric_DNA_dissociated_from_spindle","termid":"PBO:0036189"}


id: PBO:0085067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nonfunctional homolog of Gpm1p phosphoglycerate mutase; if functional, would convert 3-phosphoglycerate to 2-phosphoglycerate in glycolysis; GPM2 has a paralog, GPM3, that arose from the whole genome duplication","termid":"PBO:0085067"}


id: PBO:0014273
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUppressor of Cdc2 ts-mutations","termid":"PBO:0014273"}


id: PBO:0034717
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endosulfine Igo1","termid":"PBO:0034717"}


id: PBO:0081997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and SCAN domain containing 30","termid":"PBO:0081997"}


id: PBO:0069701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 980, pseudogene","termid":"PBO:0069701"}


id: GO:0060506
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of activation of the transmembrane Smoothened-type protein. This process contributes to lung development.","definition_xrefs":["GOC:dph","GOC:mtg_lung"],"direct_ancestors":[{"relation_name":"is_a","term_name":"smoothened signaling pathway","termid":"GO:0007224"},{"relation_name":"part_of","term_name":"cell-cell signaling involved in lung development","termid":"GO:0060495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"smoothened signaling pathway involved in lung development","synonyms":[{"name":"hedgehog signaling pathway involved in lung development","type":"exact"},{"name":"hh signaling pathway involved in lung development","type":"exact"},{"name":"smoothened signalling pathway involved in lung development","type":"exact"}],"termid":"GO:0060506"}


id: GO:1990917
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The cytoplasm of an ovum.","definition_xrefs":["PMID:19022436"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"ooplasm","termid":"GO:1990917"}


id: PBO:0090511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unconventional prefoldin chaperone involved protein complex assembly Uri1","termid":"PBO:0090511"}


id: GO:0099536
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling to, from or within a synapse.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling","termid":"GO:0007267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"synaptic signaling","termid":"GO:0099536"}


id: PBO:0001533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear transport factor Nxt2","termid":"PBO:0001533"}


id: GO:0044837
data:
  {"annotated_genes":["SJAG_03703","SJAG_03025","SJAG_01943","SJAG_04703","SJAG_04498","SJAG_04077","SJAG_00082","SJAG_03048","SJAG_00228","SJAG_02592","SJAG_03379","SJAG_03045","SJAG_04621","SJAG_02864","SJAG_04887","SJAG_02831","SJAG_00938","SJAG_01143","SJAG_04930","SJAG_02431","SJAG_01894","SJAG_01732","SJAG_00279","SJAG_00700","SJAG_01665","SJAG_02700","SJAG_01805","SJAG_04982","SJAG_03088","SJAG_04597","SJAG_03596","SJAG_00268"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101265,106933],"is_not":false,"summary":null,"term":"GO:0044837"},{"annotations":[106932],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000915"},{"annotations":[94425,85503,94170,104267],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071520"},{"annotations":[88471,88684,94171,98553,88730,113137,114533,84454,91425,107999,114712,115190,94060,113959,108433,95028,93787,93863,98690,97387,104269,73854],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903475"},{"annotations":[94172],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1903479"},{"annotations":[95029,94173,98554,84455,91426,113960,93788,97056,108434,96824],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1902404"},{"annotations":[86166],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902406"},{"annotations":[98498],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1903500"},{"annotations":[90547,86170],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1903501"},{"annotations":[115449,89953,90513],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1903499"}]},"cv_name":"biological_process","definition":"A process which results in the assembly, arrangement of constituent parts, or disassembly of an actomyosin contractile ring.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"is_a","term_name":"cortical actin cytoskeleton organization","termid":"GO:0030866"},{"relation_name":"is_a","term_name":"actomyosin structure organization","termid":"GO:0031032"},{"relation_name":"part_of","term_name":"cytoskeleton-dependent cytokinesis","termid":"GO:0061640"}],"gene_count":32,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00228":null,"SJAG_00268":null,"SJAG_00279":null,"SJAG_00700":null,"SJAG_00938":null,"SJAG_01143":null,"SJAG_01665":null,"SJAG_01732":null,"SJAG_01805":null,"SJAG_01894":null,"SJAG_01943":null,"SJAG_02431":null,"SJAG_02592":null,"SJAG_02700":null,"SJAG_02831":null,"SJAG_02864":null,"SJAG_03025":null,"SJAG_03045":null,"SJAG_03048":null,"SJAG_03088":null,"SJAG_03379":null,"SJAG_03596":null,"SJAG_03703":null,"SJAG_04077":null,"SJAG_04498":null,"SJAG_04597":null,"SJAG_04621":null,"SJAG_04703":null,"SJAG_04887":null,"SJAG_04930":null,"SJAG_04982":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0008150","GO:0007010","GO:0030036","GO:0007049"],"is_obsolete":false,"name":"actomyosin contractile ring organization","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:27059155":null,"PMID:32915139":null},"synonyms":[{"name":"cytokinesis, actomyosin contractile ring organization","type":"exact"}],"termid":"GO:0044837","terms_by_termid":{"GO:0000915":null,"GO:0044837":null,"GO:0071520":null,"GO:0120306":null,"GO:1902404":null,"GO:1902406":null,"GO:1903475":null,"GO:1903479":null,"GO:1903499":null,"GO:1903500":null,"GO:1903501":null}}


id: PBO:0027801
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_JM335","termid":"PBO:0027801"}


id: PBO:0041536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 17 open reading frame 67","termid":"PBO:0041536"}


id: PBO:0036110
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_actin_cable_assembly","termid":"PBO:0036110"}


id: FYPO:0001609
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-ornithine measured in the vacuole is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular ornithine level","termid":"FYPO:0001564"},{"relation_name":"is_a","term_name":"decreased level of substance in vacuole","termid":"FYPO:0001602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased vacuolar ornithine level","synonyms":[{"name":"decreased level of ornithine in vacuole","type":"exact"},{"name":"decreased vacuolar L-ornithine level","type":"exact"},{"name":"decreased vacuolar ornithine level during mitotic cell cycle","type":"related"},{"name":"decreased vacuolar ornithine level during vegetative growth","type":"exact"},{"name":"reduced level of ornithine in vacuole","type":"exact"},{"name":"reduced vacuolar ornithine level","type":"exact"}],"termid":"FYPO:0001609"}


id: GO:0001001
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a single subunit mitochondrial RNA polymerase enzyme, which is composed of a single catalytic subunit similar to the RNA polymerase enzymes from phages T3, T7, and SP6.","definition_xrefs":["PMID:20701995","GOC:txnOH","PMID:2088182"],"direct_ancestors":[{"relation_name":"is_a","term_name":"single-subunit type RNA polymerase binding","termid":"GO:0001050"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"mitochondrial single-subunit type RNA polymerase binding","termid":"GO:0001001"}


id: PBO:0069958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1251, pseudogene","termid":"PBO:0069958"}


id: GO:0004925
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with prolactin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor activity","termid":"GO:0004896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"prolactin receptor activity","termid":"GO:0004925"}


id: GO:1900234
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of Kit signaling pathway.","definition_xrefs":["GOC:signaling","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine-mediated signaling pathway","termid":"GO:0001959"},{"relation_name":"regulates","term_name":"Kit signaling pathway","termid":"GO:0038109"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of Kit signaling pathway","synonyms":[{"name":"regulation of Kit signalling pathway","type":"exact"},{"name":"regulation of stem cell factor receptor signaling pathway","type":"exact"},{"name":"regulation of stem cell factor signaling pathway","type":"exact"}],"termid":"GO:1900234"}


id: PBO:0057397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548f-5","termid":"PBO:0057397"}


id: PBO:0091448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small non-coding RNA, meiosis specific","termid":"PBO:0091448"}


id: GO:0035689
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by chemokine CCL5 binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:18337562","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine-mediated signaling pathway","termid":"GO:0070098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"chemokine (C-C motif) ligand 5 signaling pathway","synonyms":[{"name":"CCL5-mediated signaling pathway","type":"exact"},{"name":"RANTES-mediated signaling pathway","type":"exact"},{"name":"chemokine (C-C motif) ligand 5 signalling pathway","type":"exact"}],"termid":"GO:0035689"}


id: PBO:0041293
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C2 antisense RNA 1","termid":"PBO:0041293"}


id: PBO:0080468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vesicle transport through interaction with t-SNAREs 1A","termid":"PBO:0080468"}


id: PBO:0083504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF ARG81/YML099C","termid":"PBO:0083504"}


id: PBO:0073961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 22 member 10","termid":"PBO:0073961"}


id: GO:0022038
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the corpus callosum over time, from its formation to the mature structure. The corpus callosum is a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provide communication between the right and left cerebral hemispheres.","definition_xrefs":["GOC:dph","GOC:cls","GOC:curators","GOC:dgh","GOC:jid","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"telencephalon development","termid":"GO:0021537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"corpus callosum development","termid":"GO:0022038"}


id: GO:0032535
data:
  {"annotated_genes":["SJAG_00279","SJAG_04668","SJAG_01943","SJAG_01805","SJAG_04703","SJAG_02019","SJAG_04479","SJAG_03401","SJAG_01993","SJAG_00521","SJAG_04982","SJAG_03086","SJAG_01894","SJAG_02532","SJAG_02566","SJAG_04100","SJAG_04332","SJAG_02700","SJAG_00409"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88654,110439,114710,95026,84452,88470],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051016"},{"annotations":[91826,101817,110051],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006884"},{"annotations":[88550,102622],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009992"},{"annotations":[89944],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045793"},{"annotations":[85999,97878,101284,98868,86843],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030833"},{"annotations":[90680],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008361"},{"annotations":[110442,93864],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042989"}]},"cv_name":"biological_process","definition":"A process that modulates the size of a cellular component.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component organization","termid":"GO:0016043"},{"relation_name":"is_a","term_name":"regulation of anatomical structure size","termid":"GO:0090066"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_00409":null,"SJAG_00521":null,"SJAG_01805":null,"SJAG_01894":null,"SJAG_01943":null,"SJAG_01993":null,"SJAG_02019":null,"SJAG_02532":null,"SJAG_02566":null,"SJAG_02700":null,"SJAG_03086":null,"SJAG_03401":null,"SJAG_04100":null,"SJAG_04332":null,"SJAG_04479":null,"SJAG_04668":null,"SJAG_04703":null,"SJAG_04982":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular component size","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0032535","terms_by_termid":{"GO:0006884":null,"GO:0008361":null,"GO:0009992":null,"GO:0030833":null,"GO:0042989":null,"GO:0045793":null,"GO:0051016":null}}


id: PBO:0090635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial cardiolipin-specific phospholipase Cld1","termid":"PBO:0090635"}


id: PBO:0070291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, variant U1 small nuclear 32","termid":"PBO:0070291"}


id: PBO:0026791
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_pneumocandin_B0","termid":"PBO:0026791"}


id: FYPO:0002366
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 4 of histone H3 occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone methylation during vegetative growth","termid":"FYPO:0000870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0001985","FYPO:0000002","FYPO:0002494","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"decreased histone H3-K4 methylation during vegetative growth","synonyms":[{"name":"decreased histone H3 K4 methylation during vegetative growth","type":"exact"},{"name":"decreased histone H3-K4 methylation during mitotic cell cycle","type":"related"},{"name":"decreased histone H3K4me during vegetative growth","type":"exact"},{"name":"decreased histone lysine H3 K4 methylation during vegetative growth","type":"exact"},{"name":"reduced histone H3-K4 methylation during vegetative growth","type":"exact"}],"termid":"FYPO:0002366"}


id: PBO:0059581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metastasis associated 1 family member 3","termid":"PBO:0059581"}


id: PBO:0049764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA complex group 4 pseudogene 1","termid":"PBO:0049764"}


id: SO:0000483
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript that is never translated into a protein.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary_transcript","termid":"SO:0000185"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nc_primary_transcript","synonyms":[{"name":"nc primary transcript","type":"exact"},{"name":"noncoding primary transcript","type":"exact"}],"termid":"SO:0000483"}


id: GO:0015616
data:
  {"annotated_genes":["SJAG_03832","SJAG_02460","SJAG_00871","SJAG_00980"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[85473,89384,99309,109518],"is_not":false,"summary":null,"term":"GO:0015616"}]},"cv_name":"molecular_function","definition":"Generation of movement along a single- or double-stranded DNA molecule, driven by ATP hydrolysis.","definition_xrefs":["PMID:16428451","GOC:mah","PMID:17631491"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-dependent activity, acting on DNA","termid":"GO:0008094"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00871":null,"SJAG_00980":null,"SJAG_02460":null,"SJAG_03832":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0003674","GO:0140097","GO:0003824"],"is_obsolete":false,"name":"DNA translocase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0015616","terms_by_termid":{"GO:0015616":null}}


id: GO:0002158
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of osteoclasts, resulting in the expansion of an osteoclast cell population. An osteoclast is a specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue, which typically differentiates from monocytes.","definition_xrefs":["GOC:hjd","CL:0000092"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte proliferation","termid":"GO:0070661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"osteoclast proliferation","termid":"GO:0002158"}


id: PBO:0067670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 850, pseudogene","termid":"PBO:0067670"}


id: PBO:0083177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps TEL14L-XC, which is a telomeric X element core sequence on the left arm of chromosome XIV","termid":"PBO:0083177"}


id: GO:0140676
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Fluctuation in the extracellular cAMP levels due to the alternate activation of adenylate cyclase, which produces cAMP, and phosphodiesterase, which degrades it. Occurs in Dictyostelium during early sorocarp development. Oscillation in signaling result is directional chemotaxis of cells towards the center of the aggregate.","definition_xrefs":["PMID:18657484"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling","termid":"GO:0007267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"oscillatory cAMP signaling","synonyms":[{"name":"cAMP relay","type":"exact"}],"termid":"GO:0140676"}


id: PBO:0078137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 16","termid":"PBO:0078137"}


id: PBO:0043010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chitinase 1","termid":"PBO:0043010"}


id: PBO:0078490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ile (anticodon AAT) 9-1","termid":"PBO:0078490"}


id: PBO:0003941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin Nup85","termid":"PBO:0003941"}


id: PBO:0077256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane p24 trafficking protein 7","termid":"PBO:0077256"}


id: GO:0008346
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The behavior of a larval organism relating to the progression of that organism along the ground by the process of lifting and setting down each leg.","definition_xrefs":["GOC:pr","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"larval locomotory behavior","termid":"GO:0008345"},{"relation_name":"is_a","term_name":"walking behavior","termid":"GO:0090659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"larval walking behavior","synonyms":[{"name":"larval walking behaviour","type":"exact"}],"termid":"GO:0008346"}


id: GO:0006524
data:
  {"annotated_genes":["SJAG_04145"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107360],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042853"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of alanine, 2-aminopropanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alanine metabolic process","termid":"GO:0006522"},{"relation_name":"is_a","term_name":"alpha-amino acid catabolic process","termid":"GO:1901606"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04145":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520","GO:0044248"],"is_obsolete":false,"name":"alanine catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"alanine breakdown","type":"exact"},{"name":"alanine catabolism","type":"exact"},{"name":"alanine degradation","type":"exact"}],"termid":"GO:0006524","terms_by_termid":{"GO:0042853":null}}


id: GO:1990418
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin-like growth factor stimulus.","definition_xrefs":["PMID:21932665"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to hormone","termid":"GO:0009725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to insulin-like growth factor stimulus","termid":"GO:1990418"}


id: PBO:0052059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysyl-tRNA synthetase 1 pseudogene 3","termid":"PBO:0052059"}


id: PBO:0030451
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-growth_auxotrophic_for_lysine_and_methionine","termid":"PBO:0030451"}


id: PBO:0076707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor 7 like 1","termid":"PBO:0076707"}


id: GO:0008728
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + GTP = AMP + guanosine 3'-diphosphate 5'-triphosphate.","definition_xrefs":["EC:2.7.6.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diphosphotransferase activity","termid":"GO:0016778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"GTP diphosphokinase activity","secondary_identifiers":["RHEA:22088","MetaCyc:GTPPYPHOSKIN-RXN"],"synonyms":[{"name":"(p)ppGpp synthetase I","type":"related"},{"name":"(p)ppGpp synthetase II","type":"related"},{"name":"ATP-GTP 3'-diphosphotransferase activity","type":"related"},{"name":"ATP:GTP 3'-diphosphotransferase activity","type":"related"},{"name":"GPSI","type":"related"},{"name":"GPSII","type":"related"},{"name":"GTP pyrophosphokinase activity","type":"exact"},{"name":"guanosine 3',5'-polyphosphate synthase activity","type":"related"},{"name":"guanosine 5',3'-polyphosphate synthetase activity","type":"related"},{"name":"guanosine pentaphosphate synthetase activity","type":"related"},{"name":"ppGpp synthetase I activity","type":"related"},{"name":"stringent factor activity","type":"related"}],"termid":"GO:0008728"}


id: PBO:0065391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate enriched lncRNA","termid":"PBO:0065391"}


id: PBO:0044294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CXXC finger protein 4","termid":"PBO:0044294"}


id: GO:0070881
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of proline transport.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organic acid transport","termid":"GO:0032890"},{"relation_name":"is_a","term_name":"regulation of amino acid transport","termid":"GO:0051955"},{"relation_name":"regulates","term_name":"proline transport","termid":"GO:0015824"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of proline transport","termid":"GO:0070881"}


id: PBO:0028617
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_U2_snRNP_binding","termid":"PBO:0028617"}


id: PBO:0070543
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 9","termid":"PBO:0070543"}


id: PBO:0041705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calmodulin 2","termid":"PBO:0041705"}


id: PBO:0067554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 705, pseudogene","termid":"PBO:0067554"}


id: PBO:0087296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Single-stranded DNA endonuclease (with Rad10p); cleaves single-stranded DNA during nucleotide excision repair and double-strand break repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); homolog of human XPF protein","termid":"PBO:0087296"}


id: PBO:0063158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paired box 4","termid":"PBO:0063158"}


id: GO:1905480
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of glutamate-ammonia ligase activity.","definition_xrefs":["GO_REF:0000059","PMID:10377385","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of glutamate-ammonia ligase activity (obsolete GO:1905480)","synonyms":[{"name":"activation of L-glutamate:ammonia ligase (ADP-forming)","type":"narrow"},{"name":"activation of L-glutamine synthetase activity","type":"narrow"},{"name":"activation of glutamate-ammonia ligase activity","type":"narrow"},{"name":"activation of glutamine synthetase activity","type":"narrow"},{"name":"activation of glutamylhydroxamic synthetase activity","type":"narrow"},{"name":"positive regulation of L-glutamate:ammonia ligase (ADP-forming)","type":"exact"},{"name":"positive regulation of L-glutamine synthetase activity","type":"exact"},{"name":"positive regulation of glutamine synthetase activity","type":"exact"},{"name":"positive regulation of glutamylhydroxamic synthetase activity","type":"exact"},{"name":"up regulation of L-glutamate:ammonia ligase (ADP-forming)","type":"exact"},{"name":"up regulation of L-glutamine synthetase activity","type":"exact"},{"name":"up regulation of glutamate-ammonia ligase activity","type":"exact"},{"name":"up regulation of glutamine synthetase activity","type":"exact"},{"name":"up regulation of glutamylhydroxamic synthetase activity","type":"exact"},{"name":"up-regulation of L-glutamate:ammonia ligase (ADP-forming)","type":"exact"},{"name":"up-regulation of L-glutamine synthetase activity","type":"exact"},{"name":"up-regulation of glutamate-ammonia ligase activity","type":"exact"},{"name":"up-regulation of glutamine synthetase activity","type":"exact"},{"name":"up-regulation of glutamylhydroxamic synthetase activity","type":"exact"},{"name":"upregulation of L-glutamate:ammonia ligase (ADP-forming)","type":"exact"},{"name":"upregulation of L-glutamine synthetase activity","type":"exact"},{"name":"upregulation of glutamate-ammonia ligase activity","type":"exact"},{"name":"upregulation of glutamine synthetase activity","type":"exact"},{"name":"upregulation of glutamylhydroxamic synthetase activity","type":"exact"}],"termid":"GO:1905480"}


id: PBO:0066600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ras homolog family member Q pseudogene 3","termid":"PBO:0066600"}


id: GO:0001956
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the regulated release of a neurotransmitter.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neurotransmitter secretion","termid":"GO:0046928"},{"relation_name":"is_a","term_name":"positive regulation of synaptic transmission","termid":"GO:0050806"},{"relation_name":"is_a","term_name":"positive regulation of neurotransmitter transport","termid":"GO:0051590"},{"relation_name":"is_a","term_name":"positive regulation of secretion by cell","termid":"GO:1903532"},{"relation_name":"positively_regulates","term_name":"neurotransmitter secretion","termid":"GO:0007269"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0023052"],"is_obsolete":false,"name":"positive regulation of neurotransmitter secretion","synonyms":[{"name":"activation of neurotransmitter secretion","type":"narrow"},{"name":"stimulation of neurotransmitter secretion","type":"narrow"},{"name":"up regulation of neurotransmitter secretion","type":"exact"},{"name":"up-regulation of neurotransmitter secretion","type":"exact"},{"name":"upregulation of neurotransmitter secretion","type":"exact"}],"termid":"GO:0001956"}


id: GO:1990819
data:
  {"annotated_genes":["SJAG_00938","SJAG_03444","SJAG_01888","SJAG_03011","SJAG_01171","SJAG_00677","SJAG_01017","SJAG_03357","SJAG_04781","SJAG_05001","SJAG_02718","SJAG_02486","SJAG_00667","SJAG_01943","SJAG_04887","SJAG_03453","SJAG_03646"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[84473,85270,87001,88652,89964,90161,91421,91503,95671,96264,98070,98071,104200,104260,107437,110734,112290,115182],"is_not":false,"summary":null,"term":"GO:1990819"}]},"cv_name":"cellular_component","definition":"A focus at the mating projection tip where the cell wall is degraded during conjugation with cellular fusion. Actin filaments form an aster-like structure from this location.","definition_xrefs":["PMID:25825517"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"actin cytoskeleton","termid":"GO:0015629"},{"relation_name":"part_of","term_name":"mating projection tip","termid":"GO:0043332"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00667":null,"SJAG_00677":null,"SJAG_00938":null,"SJAG_01017":null,"SJAG_01171":null,"SJAG_01888":null,"SJAG_01943":null,"SJAG_02486":null,"SJAG_02718":null,"SJAG_03011":null,"SJAG_03357":null,"SJAG_03444":null,"SJAG_03453":null,"SJAG_03646":null,"SJAG_04781":null,"SJAG_04887":null,"SJAG_05001":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0015629","GO:0005575"],"is_obsolete":false,"name":"mating projection actin fusion focus","references_by_uniquename":{"GO_REF:0000107":null,"PMID:36148799":null},"synonyms":[{"name":"actin fusion focus","type":"broad"}],"termid":"GO:1990819","terms_by_termid":{"GO:1990819":null}}


id: FYPO:0007153
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the breakdown of polyphosphate is normal (i.e. indistinguishable from wild type) during a cellular response to phosphate starvation.","definition_xrefs":["PMID:1318242","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal metabolic process during vegetative growth","termid":"FYPO:0000859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal polyphosphate catabolism during cellular response to phosphate starvation","synonyms":[{"name":"normal polyphosphate catabolic process during cellular response to phosphate starvation","type":"exact"},{"name":"normal polyphosphate catabolism during cellular response to phosphate starvation during mitotic cell cycle","type":"related"},{"name":"normal polyphosphate catabolism during cellular response to phosphate starvation during vegetative growth","type":"exact"},{"name":"normal polyphosphate degradation during cellular response to phosphate starvation","type":"exact"}],"termid":"FYPO:0007153"}


id: PBO:0083650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endochitinase; required for cell separation after mitosis; transcriptional activation during the G1 phase of the cell cycle is mediated by transcription factor Ace2p","termid":"PBO:0083650"}


id: PBO:0051713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insulin induced gene 1","termid":"PBO:0051713"}


id: GO:0046162
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving heme c, a derivative of heme found in cytochromes c, b4, and f.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heme metabolic process","termid":"GO:0042168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"heme C metabolic process","synonyms":[{"name":"haem C metabolic process","type":"exact"},{"name":"haem C metabolism","type":"exact"},{"name":"heme C metabolism","type":"exact"}],"termid":"GO:0046162"}


id: PBO:0051343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 2D-24 (non-functional)","termid":"PBO:0051343"}


id: GO:0009648
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species.","definition_xrefs":["GOC:pj","ISBN:0697037754","GOC:jid","ISBN:0709408862","ISBN:0582015952"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to light stimulus","termid":"GO:0009416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"photoperiodism","secondary_identifiers":["Wikipedia:Photoperiodism"],"synonyms":[{"name":"response to day length","type":"exact"},{"name":"response to night length","type":"exact"},{"name":"response to photoperiod","type":"exact"}],"termid":"GO:0009648"}


id: PBO:0001642
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alternative splicing possible. Evidence of transcript missing final intron","termid":"PBO:0001642"}


id: PBO:0057665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1256","termid":"PBO:0057665"}


id: GO:1905225
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thyrotropin-releasing hormone (TRH) stimulus. TRH increases the secretion of thyroid-stimulating hormone by the anterior pituitary.","definition_xrefs":["GOC:TermGenie","GOC:sl","PMID:21382270","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to peptide hormone","termid":"GO:0043434"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to thyrotropin-releasing hormone","synonyms":[{"name":"response to TRH","type":"related"},{"name":"response to protirelin","type":"exact"}],"termid":"GO:1905225"}


id: GO:0014905
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which non-proliferating myoblasts, after migrating to the site of injury, fuse into existing damaged fibers or fuse to myotubes to form new fibers, as part of the process of skeletal muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.","definition_xrefs":["GOC:mtg_muscle","CL:0000056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myoblast fusion","termid":"GO:0007520"},{"relation_name":"part_of","term_name":"myotube differentiation involved in skeletal muscle regeneration","termid":"GO:0014908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myoblast fusion involved in skeletal muscle regeneration","termid":"GO:0014905"}


id: PBO:0030664
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_leucine_import","termid":"PBO:0030664"}


id: PBO:0047627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FOXO induced long non-coding RNA 1","termid":"PBO:0047627"}


id: PBO:0086383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative ATP-dependent RNA helicase of the DEAD-box protein family; constituent of 66S pre-ribosomal particles; essential protein involved in ribosome biogenesis","termid":"PBO:0086383"}


id: PBO:0046537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group 18 member 1","termid":"PBO:0046537"}


id: PBO:0064600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POU class 2 homeobox 2","termid":"PBO:0064600"}


id: PBO:0029255
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_regulation_of_DNA_replication","termid":"PBO:0029255"}


id: PBO:0061216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar protein 8","termid":"PBO:0061216"}


id: PBO:0108920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIPIN pseudogene 2","termid":"PBO:0108920"}


id: PBO:0029627
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_meiotic_sister_chromatid_cohesion","termid":"PBO:0029627"}


id: GO:0043642
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of novobiocin, a coumarin antibiotic produced by the bacterium Gyrasestreptomyces spheroides, that acts by inhibiting DNA gyrase.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coumarin biosynthetic process","termid":"GO:0009805"},{"relation_name":"is_a","term_name":"glycoside biosynthetic process","termid":"GO:0016138"},{"relation_name":"is_a","term_name":"antibiotic biosynthetic process","termid":"GO:0017000"},{"relation_name":"is_a","term_name":"amide biosynthetic process","termid":"GO:0043604"},{"relation_name":"is_a","term_name":"novobiocin metabolic process","termid":"GO:0043641"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"ether biosynthetic process","termid":"GO:1901503"},{"relation_name":"is_a","term_name":"organonitrogen compound biosynthetic process","termid":"GO:1901566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"novobiocin biosynthetic process","secondary_identifiers":["Wikipedia:Novobiocin"],"termid":"GO:0043642"}


id: PBO:0084860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosomal protein of the large subunit; two mitochondrial ribosomal proteins, YmL14 and YmL24, have been assigned to the same gene","termid":"PBO:0084860"}


id: GO:0045991
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transcription regulation process in which the presence of one carbon source leads to an increase in the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other carbon sources.","definition_xrefs":["GOC:mah","PMID:10559153"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of DNA-templated transcription","termid":"GO:0045893"},{"relation_name":"is_a","term_name":"carbon catabolite regulation of transcription","termid":"GO:0045990"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0006351","GO:0006355","GO:0010467"],"is_obsolete":false,"name":"carbon catabolite activation of transcription","synonyms":[{"name":"positive regulation of transcription by carbon catabolites","type":"exact"}],"termid":"GO:0045991"}


id: FYPO:0008001
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which cells show increased sensitivity to menadione when the cell population is in stationary phase. Cells stop growing (and may die) at a concentration of menadione that allows wild type cells to grow.","definition_xrefs":["PomBase:mlr","PMID:35618649"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical in stationary phase","termid":"FYPO:0008000"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002683","FYPO:0000003","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to menadione in stationary phase","synonyms":[{"name":"sensitive to menadione during stationary phase","type":"exact"}],"termid":"FYPO:0008001"}


id: PBO:0080554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WBP1 pseudogene 1","termid":"PBO:0080554"}


id: PBO:0061230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-POU domain containing, octamer-binding pseudogene 2","termid":"PBO:0061230"}


id: FYPO:0004674
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to dimethyl sulfoxide. Cells stop growing (and may die) at a concentration of dimethyl sulfoxide that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002683","FYPO:0000003","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to dimethyl sulfoxide","synonyms":[{"name":"hypersensitive to dimethyl sulfoxide","type":"exact"},{"name":"sensitive to DMSO","type":"exact"},{"name":"sensitive to dimethyl sulfoxide during mitotic cell cycle","type":"related"},{"name":"sensitive to dimethyl sulfoxide during vegetative growth","type":"exact"},{"name":"sensitive to dimethyl sulphoxide","type":"exact"}],"termid":"FYPO:0004674"}


id: PBO:0077605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane serine protease 11G, pseudogene","termid":"PBO:0077605"}


id: PBO:0046140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 5A pseudogene 3","termid":"PBO:0046140"}


id: PBO:0089406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S7","termid":"PBO:0089406"}


id: PBO:0015711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"external invertase, beta-fructofuranosidase","termid":"PBO:0015711"}


id: PBO:0049594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 clustered histone 12","termid":"PBO:0049594"}


id: PBO:0033759
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_exit_from_meiosis","termid":"PBO:0033759"}


id: PBO:0072056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 26","termid":"PBO:0072056"}


id: PBO:0066847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 147","termid":"PBO:0066847"}


id: PBO:0051664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"INAVA pseudogene 1","termid":"PBO:0051664"}


id: GO:0045715
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of low-density lipoprotein particle receptors.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of low-density lipoprotein particle receptor biosynthetic process (obsolete GO:0045715)","synonyms":[{"name":"down regulation of low-density lipoprotein receptor biosynthetic process","type":"exact"},{"name":"down-regulation of low-density lipoprotein receptor biosynthetic process","type":"exact"},{"name":"downregulation of low-density lipoprotein receptor biosynthetic process","type":"exact"},{"name":"inhibition of low-density lipoprotein receptor biosynthetic process","type":"narrow"},{"name":"negative regulation of low-density lipoprotein receptor anabolism","type":"exact"},{"name":"negative regulation of low-density lipoprotein receptor biosynthesis","type":"exact"},{"name":"negative regulation of low-density lipoprotein receptor biosynthetic process","type":"exact"},{"name":"negative regulation of low-density lipoprotein receptor formation","type":"exact"},{"name":"negative regulation of low-density lipoprotein receptor synthesis","type":"exact"}],"termid":"GO:0045715"}


id: PBO:0004075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAK-related kinase Nak1","termid":"PBO:0004075"}


id: GO:0003790
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete actin modulating activity (obsolete GO:0003790)","synonyms":[{"name":"actin modulating activity","type":"exact"}],"termid":"GO:0003790"}


id: GO:2000159
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of planar cell polarity pathway involved in heart morphogenesis.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of Wnt signaling pathway involved in heart development","termid":"GO:0003307"},{"relation_name":"is_a","term_name":"regulation of Wnt signaling pathway, planar cell polarity pathway","termid":"GO:2000095"},{"relation_name":"regulates","term_name":"planar cell polarity pathway involved in heart morphogenesis","termid":"GO:0061346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of planar cell polarity pathway involved in heart morphogenesis","termid":"GO:2000159"}


id: PBO:0070060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 17, pseudogene","termid":"PBO:0070060"}


id: PBO:0057404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548i-1","termid":"PBO:0057404"}


id: PBO:0057356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548aa-1","termid":"PBO:0057356"}


id: GO:0034477
data:
  {"annotated_genes":["SJAG_01798"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89869],"is_not":false,"summary":null,"term":"GO:0034477"}]},"cv_name":"biological_process","definition":"Any process involved in forming the mature 3' end of a U6 snRNA molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snRNA 3'-end processing","termid":"GO:0034472"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01798":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0016073"}],"interesting_parent_ids":["GO:0016073","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"U6 snRNA 3'-end processing","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"U6 snRNA 3' end processing","type":"exact"}],"termid":"GO:0034477","terms_by_termid":{"GO:0034477":null}}


id: PBO:0068641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 22, pseudogene","termid":"PBO:0068641"}


id: PBO:0053812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1072","termid":"PBO:0053812"}


id: PBO:0049143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione peroxidase pseudogene 1","termid":"PBO:0049143"}


id: PBO:0086534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; overlaps verified ORF LSM5/YER146W","termid":"PBO:0086534"}


id: GO:0034885
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: gamma-N-formylaminovinylacetate + H2O = gamma-aminovinylacetate + HCOOH.","definition_xrefs":["UM-BBD_reactionID:r1350"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787","GO:0016810"],"is_obsolete":false,"name":"gamma-N-formylaminovinylacetate hydrolase activity","termid":"GO:0034885"}


id: PBO:0017652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-aminoadipate transaminase (predicted)","termid":"PBO:0017652"}


id: PBO:0051635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inner membrane mitochondrial protein","termid":"PBO:0051635"}


id: PBO:0012065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pig-F/3-ketosphinganine reductase fusion protein (predicted)","termid":"PBO:0012065"}


id: PBO:0075958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal transducing adaptor family member 2","termid":"PBO:0075958"}


id: PBO:0059532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded tRNA-Asp (GAU/C)","termid":"PBO:0059532"}


id: GO:0042150
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process of DNA recombination occurring within a plasmid or between plasmids and other plasmids or DNA molecules.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA recombination","termid":"GO:0006310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006310","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"plasmid recombination","termid":"GO:0042150"}


id: PBO:0110196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperonin-containing T-complex associated protein","termid":"PBO:0110196"}


id: GO:0102843
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-18:2-2-16:0-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor = 1-18:2-2-16:1-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["RHEA:46756","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"1-18:2-2-16:0-monogalactosyldiacylglycerol desaturase activity (SN2-16:1 forming)","secondary_identifiers":["EC:1.14.19.42","MetaCyc:RXN-8304"],"termid":"GO:0102843"}


id: PBO:0063749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHB1 pseudogene 14","termid":"PBO:0063749"}


id: PBO:0078522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 13","termid":"PBO:0078522"}


id: PR:O14067
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1687.08 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14067"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1687.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1687.08","synonyms":[{"name":"Spom972h-SPAC1687.08","type":"exact"}],"termid":"PR:O14067"}


id: GO:0001964
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An action or movement due to the application of a sudden unexpected stimulus.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to external stimulus","termid":"GO:0009605"},{"relation_name":"is_a","term_name":"neuromuscular process","termid":"GO:0050905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"startle response","secondary_identifiers":["Wikipedia:Startle_reaction"],"termid":"GO:0001964"}


id: PBO:0077604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane serine protease 11F","termid":"PBO:0077604"}


id: PBO:0055875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 3B","termid":"PBO:0055875"}


id: PBO:0076357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptotagmin like 4","termid":"PBO:0076357"}


id: GO:0102982
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-alpha-D-glucose + NAD = H+ + UDP-3-keto-alpha-D-glucose + NADH.","definition_xrefs":["PMID:11278540","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"UDP-3-dehydro-alpha-D-glucose dehydrogenase activity","secondary_identifiers":["MetaCyc:RXN-9578","RHEA:35755"],"termid":"GO:0102982"}


id: GO:0005801
data:
  {"annotated_genes":["SJAG_04739","SJAG_02525","SJAG_02750","SJAG_03690","SJAG_01415","SJAG_03467","SJAG_03552","SJAG_03953","SJAG_04406","SJAG_04358","SJAG_01459","SJAG_00816","SJAG_00072","SJAG_02495","SJAG_02168","SJAG_04837"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[84849,89237,89493,93446,94231,95876,98650,99592,108804,110846,112537,115648],"is_not":false,"summary":null,"term":"GO:0005801"},{"annotations":[95230,113600,86896,91871],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0033106"}]},"cv_name":"cellular_component","definition":"The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum.","definition_xrefs":["ISBN:0815316194","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"},{"relation_name":"part_of","term_name":"Golgi apparatus","termid":"GO:0005794"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00072":null,"SJAG_00816":null,"SJAG_01415":null,"SJAG_01459":null,"SJAG_02168":null,"SJAG_02495":null,"SJAG_02525":null,"SJAG_02750":null,"SJAG_03467":null,"SJAG_03552":null,"SJAG_03690":null,"SJAG_03953":null,"SJAG_04358":null,"SJAG_04406":null,"SJAG_04739":null,"SJAG_04837":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0005794"],"is_obsolete":false,"name":"cis-Golgi network","references_by_uniquename":{"GO_REF:0000107":null,"PMID:31956022":null},"secondary_identifiers":["NIF_Subcellular:sao632188024"],"synonyms":[{"name":"Golgi cis face","type":"related"},{"name":"Golgi cis-face","type":"related"},{"name":"cis Golgi network","type":"exact"},{"name":"cis face","type":"broad"},{"name":"forming face","type":"related"}],"termid":"GO:0005801","terms_by_termid":{"GO:0005801":null,"GO:0033106":null}}


id: PBO:0038433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetoacetyl-CoA synthetase pseudogene 1","termid":"PBO:0038433"}


id: FYECO:0000218
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which beta-estradiol was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ beta-estradiol","termid":"FYECO:0000218"}


id: GO:0052318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of phytoalexin metabolism, the chemical reactions and pathways involving phytoalexins, any of a range of substances produced by plants as part of their defense response.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular metabolic process","termid":"GO:0031323"},{"relation_name":"is_a","term_name":"regulation of secondary metabolic process","termid":"GO:0043455"},{"relation_name":"regulates","term_name":"phytoalexin metabolic process","termid":"GO:0052314"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"regulation of phytoalexin metabolic process","synonyms":[{"name":"regulation of phytoalexin metabolism","type":"exact"}],"termid":"GO:0052318"}


id: PR:Q96VG1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A TP53-regulated inhibitor of apoptosis 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR21329:SF8","PRO:DNx","OMA:SCHPO02571"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C119.18 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC119.18","secondary_identifiers":["UniProtKB:Q96VG1"],"synonyms":[{"name":"Spom972h-TRIAP1","type":"exact"}],"termid":"PR:Q96VG1"}


id: PBO:0073500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small glutamine rich tetratricopeptide repeat co-chaperone alpha","termid":"PBO:0073500"}


id: GO:0019054
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a virus effects a change in the processes and activities of its host organism.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation by virus of host process","termid":"GO:0019048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation by virus of host cellular process","synonyms":[{"name":"modification by virus of host cellular process","type":"exact"},{"name":"modulation by virus of host process","type":"broad"},{"name":"modulation of cellular process in host by virus","type":"related"},{"name":"regulation by virus of host cellular process","type":"exact"},{"name":"regulation of cellular process in host by virus","type":"exact"},{"name":"regulation of host cellular process by virus","type":"exact"},{"name":"viral host cell process manipulation","type":"exact"}],"termid":"GO:0019054"}


id: PBO:0068237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 18S ribosomal N3","termid":"PBO:0068237"}


id: PBO:0050511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeobox C11","termid":"PBO:0050511"}


id: FYPO:0000129
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is formed in the shape of a sphere.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spheroid vegetative cell","termid":"FYPO:0000021"},{"relation_name":"is_a","term_name":"spherical cell","termid":"FYPO:0001956"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000005"],"is_obsolete":false,"name":"spherical vegetative cell","synonyms":[{"name":"orb during vegetative growth","type":"exact"},{"name":"spherical cells during vegetative growth","type":"exact"},{"name":"spherical vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000129"}


id: PBO:0053731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 945","termid":"PBO:0053731"}


id: GO:0032804
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of low-density lipoprotein receptors.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of low-density lipoprotein particle receptor catabolic process","termid":"GO:0032803"},{"relation_name":"is_a","term_name":"negative regulation of protein catabolic process","termid":"GO:0042177"},{"relation_name":"is_a","term_name":"negative regulation of receptor catabolic process","termid":"GO:2000645"},{"relation_name":"negatively_regulates","term_name":"low-density lipoprotein particle receptor catabolic process","termid":"GO:0032802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0030163"},{"rel_name":"negatively_regulates","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0030163","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"negative regulation of low-density lipoprotein particle receptor catabolic process","synonyms":[{"name":"down regulation of low-density lipoprotein receptor catabolic process","type":"exact"},{"name":"down-regulation of low-density lipoprotein receptor catabolic process","type":"exact"},{"name":"downregulation of low-density lipoprotein receptor catabolic process","type":"exact"},{"name":"inhibition of low-density lipoprotein receptor catabolic process","type":"narrow"},{"name":"negative regulation of low-density lipoprotein receptor breakdown","type":"exact"},{"name":"negative regulation of low-density lipoprotein receptor catabolic process","type":"exact"},{"name":"negative regulation of low-density lipoprotein receptor catabolism","type":"exact"},{"name":"negative regulation of low-density lipoprotein receptor degradation","type":"exact"}],"termid":"GO:0032804"}


id: PR:O94302
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein RFT1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR13117:SF5","PRO:DNx","OMA:SCHPO03770"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligosaccharide translocation protein rft1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC887.19","secondary_identifiers":["UniProtKB:O94302"],"synonyms":[{"name":"Spom972h-RFT1","type":"exact"}],"termid":"PR:O94302"}


id: PBO:0078635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thyroid hormone receptor interactor 6","termid":"PBO:0078635"}


id: GO:0160044
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: chloride(in) + sulfate(out) = chloride(out) + sulfate(in).","definition_xrefs":["PMID:17442754"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:inorganic anion antiporter activity","termid":"GO:0005452"},{"relation_name":"is_a","term_name":"secondary active sulfate transmembrane transporter activity","termid":"GO:0008271"},{"relation_name":"is_a","term_name":"chloride transmembrane transporter activity","termid":"GO:0015108"},{"relation_name":"is_a","term_name":"active monoatomic ion transmembrane transporter activity","termid":"GO:0022853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"sulfate:chloride antiporter activity","termid":"GO:0160044"}


id: GO:1900079
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of arginine biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:dgf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glutamine family amino acid metabolic process","termid":"GO:0000820"},{"relation_name":"is_a","term_name":"regulation of arginine metabolic process","termid":"GO:0000821"},{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of cellular amino acid biosynthetic process","termid":"GO:2000282"},{"relation_name":"regulates","term_name":"arginine biosynthetic process","termid":"GO:0006526"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"regulation of arginine biosynthetic process","synonyms":[{"name":"regulation of arginine anabolism","type":"exact"},{"name":"regulation of arginine biosynthesis","type":"exact"},{"name":"regulation of arginine formation","type":"exact"},{"name":"regulation of arginine synthesis","type":"exact"}],"termid":"GO:1900079"}


id: GO:0040008
data:
  {"annotated_genes":["SJAG_02392","SJAG_03705","SJAG_02169","SJAG_04724","SJAG_04322","SJAG_02723","SJAG_00514","SJAG_02838","SJAG_03581","SJAG_03486","SJAG_01456","SJAG_00216","SJAG_00244"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90713,86035,91986],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051519"},{"annotations":[106894,95858,112595,99619,113982,102979,84251],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051523"},{"annotations":[86890],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051517"},{"annotations":[102779],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030307"},{"annotations":[111162],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051516"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development.","definition_xrefs":["GOC:mah","GOC:ems"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biological process","termid":"GO:0050789"},{"relation_name":"regulates","term_name":"growth","termid":"GO:0040007"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00216":null,"SJAG_00244":null,"SJAG_00514":null,"SJAG_01456":null,"SJAG_02169":null,"SJAG_02392":null,"SJAG_02723":null,"SJAG_02838":null,"SJAG_03486":null,"SJAG_03581":null,"SJAG_03705":null,"SJAG_04322":null,"SJAG_04724":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of growth","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0040008","terms_by_termid":{"GO:0030307":null,"GO:0051516":null,"GO:0051517":null,"GO:0051519":null,"GO:0051523":null}}


id: GO:0051457
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a protein is maintained in the nucleus and prevented from moving elsewhere. These include sequestration within the nucleus, protein stabilization to prevent transport elsewhere and the active retrieval of proteins that escape the nucleus.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of protein localization in organelle","termid":"GO:0072595"},{"relation_name":"part_of","term_name":"protein localization to nucleus","termid":"GO:0034504"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"maintenance of protein location in nucleus","synonyms":[{"name":"maintenance of nuclear protein localization","type":"exact"},{"name":"maintenance of protein localization in nucleus","type":"related"},{"name":"maintenance of protein location in cell nucleus","type":"exact"},{"name":"nuclear protein retention","type":"narrow"},{"name":"nuclear protein sequestering","type":"narrow"},{"name":"nuclear protein sequestration","type":"narrow"},{"name":"protein retention in nucleus","type":"narrow"},{"name":"protein sequestration in nucleus","type":"narrow"},{"name":"protein storage in nucleus","type":"narrow"},{"name":"protein-nuclear retention","type":"narrow"},{"name":"sequestration of protein in nucleus","type":"narrow"},{"name":"storage of protein in nucleus","type":"narrow"}],"termid":"GO:0051457"}


id: PATO:0002430
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality in which the bearer is shaped like a narrow band; ligulate.","definition_xrefs":["thefreedictionary:thefreedictionary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"strap-shaped","termid":"PATO:0002430"}


id: PBO:0061442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NR2F1 antisense RNA 1","termid":"PBO:0061442"}


id: PBO:0057902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3529","termid":"PBO:0057902"}


id: GO:0007440
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the foregut are generated and organized.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"digestive tract morphogenesis","termid":"GO:0048546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"foregut morphogenesis","termid":"GO:0007440"}


id: PBO:0067329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 420, pseudogene","termid":"PBO:0067329"}


id: PBO:0063047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PALM2 and AKAP2 fusion","termid":"PBO:0063047"}


id: PBO:0068569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 20, pseudogene","termid":"PBO:0068569"}


id: PBO:0052218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium sodium-activated channel subfamily T member 2","termid":"PBO:0052218"}


id: PBO:0042065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 134","termid":"PBO:0042065"}


id: PBO:0079627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 O","termid":"PBO:0079627"}


id: PBO:0017856
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrolysis rate of PNPG to glucose is 20.3(uM min-1 ml-2)","termid":"PBO:0017856"}


id: PBO:0043194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CKAP2L pseudogene 1","termid":"PBO:0043194"}


id: PR:O60106
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC14F5.10c gene.","definition_xrefs":["UniProtKB:O60106","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LON peptidase N-terminal domain and RING finger protein C14F5.10c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC14F5.10c","synonyms":[{"name":"Spom972h-SPBC14F5.10c","type":"exact"}],"termid":"PR:O60106"}


id: GO:0070197
data:
  {"annotated_genes":["SJAG_01777","SJAG_01263"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85935,102070],"is_not":false,"summary":null,"term":"GO:0070197"}]},"cv_name":"biological_process","definition":"The meiotic cell cycle process in which physical connections are formed between telomeric heterochromatin and the nuclear envelope, facilitating bouquet formation.","definition_xrefs":["GOC:pr","GOC:vw","PMID:18818742","GOC:jp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome attachment to the nuclear envelope","termid":"GO:0097240"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"meiotic telomere tethering at nuclear periphery","termid":"GO:0044821"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01263":null,"SJAG_01777":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0140013","GO:0007049","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"meiotic attachment of telomere to nuclear envelope","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"attachment of telomeres to nuclear envelope","type":"broad"},{"name":"attachment of telomeric chromatin to nuclear envelope","type":"broad"}],"termid":"GO:0070197","terms_by_termid":{"GO:0070197":null}}


id: GO:0033794
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl phosphate + methylamine + thioredoxin disulfide = N-methylglycine + phosphate + thioredoxin.","definition_xrefs":["EC:1.21.4.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor","termid":"GO:0050485"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"sarcosine reductase activity","secondary_identifiers":["RHEA:12825"],"synonyms":[{"name":"acetyl-phosphate methylamine:thioredoxin disulfide oxidoreductase (N-methylglycine-forming) activity","type":"related"}],"termid":"GO:0033794"}


id: PBO:0088862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA N-glycosylase activity","termid":"PBO:0088862"}


id: GO:0002406
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of antigen samples carried out by M cells in the mucosal-associated lymphoid tissue.","definition_xrefs":["GOC:jal","PMID:11896763"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen sampling in mucosal-associated lymphoid tissue","termid":"GO:0002404"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen sampling by M cells in mucosal-associated lymphoid tissue","synonyms":[{"name":"antigen sampling by M cells in MALT","type":"exact"}],"termid":"GO:0002406"}


id: PBO:0060244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYC binding protein","termid":"PBO:0060244"}


id: PBO:0004444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NRDE-2 family protein (predicted)","termid":"PBO:0004444"}


id: PBO:0001366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrolase (inferred_from_context)","termid":"PBO:0001366"}


id: PBO:0060992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NHERF family PDZ scaffold protein 4","termid":"PBO:0060992"}


id: PBO:0028123
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-lateral_cortical_nodes_absent_from_cell","termid":"PBO:0028123"}


id: PBO:0045953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EGF like, fibronectin type III and laminin G domains","termid":"PBO:0045953"}


id: GO:1903585
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of histone deubiquitination.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:24526689"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone deubiquitination (obsolete GO:1903585)","synonyms":[{"name":"down regulation of histone deubiquitination","type":"exact"},{"name":"down regulation of histone deubiquitinylation","type":"exact"},{"name":"down regulation of histone deubiquitylation","type":"exact"},{"name":"down-regulation of histone deubiquitination","type":"exact"},{"name":"down-regulation of histone deubiquitinylation","type":"exact"},{"name":"down-regulation of histone deubiquitylation","type":"exact"},{"name":"downregulation of histone deubiquitination","type":"exact"},{"name":"downregulation of histone deubiquitinylation","type":"exact"},{"name":"downregulation of histone deubiquitylation","type":"exact"},{"name":"inhibition of histone deubiquitination","type":"narrow"},{"name":"inhibition of histone deubiquitinylation","type":"narrow"},{"name":"inhibition of histone deubiquitylation","type":"narrow"},{"name":"negative regulation of histone deubiquitinylation","type":"exact"},{"name":"negative regulation of histone deubiquitylation","type":"exact"}],"termid":"GO:1903585"}


id: PBO:0056951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 17","termid":"PBO:0056951"}


id: GO:0034199
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that initiates the activity of the inactive enzyme protein kinase A.","definition_xrefs":["GOC:pde"],"direct_ancestors":[{"relation_name":"is_a","term_name":"activation of protein kinase activity","termid":"GO:0032147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"activation of protein kinase A activity","synonyms":[{"name":"protein kinase A activation","type":"exact"}],"termid":"GO:0034199"}


id: PBO:0002397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-pseudouridine synthase (predicted)","termid":"PBO:0002397"}


id: PBO:0066015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"receptor activity modifying protein 2","termid":"PBO:0066015"}


id: PBO:0012603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteasome complex subunit beta 3, Pup3 (predicted)","termid":"PBO:0012603"}


id: GO:1902002
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any protein phosphorylation that is involved in cellular protein catabolic process.","definition_xrefs":["PMID:21993622","PMID:23264631","GOC:TermGenie","GOC:rb","PMID:21098119"],"gene_count":0,"genotype_count":0,"name":"obsolete protein phosphorylation involved in cellular protein catabolic process (obsolete GO:1902002)","synonyms":[{"name":"protein amino acid phosphorylation involved in cellular protein breakdown","type":"exact"},{"name":"protein amino acid phosphorylation involved in cellular protein catabolic process","type":"exact"},{"name":"protein amino acid phosphorylation involved in cellular protein catabolism","type":"exact"},{"name":"protein amino acid phosphorylation involved in cellular protein degradation","type":"exact"},{"name":"protein phosphorylation involved in cellular protein breakdown","type":"exact"},{"name":"protein phosphorylation involved in cellular protein catabolism","type":"exact"},{"name":"protein phosphorylation involved in cellular protein degradation","type":"exact"}],"termid":"GO:1902002"}


id: PBO:0087971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Trichostatin A-insensitive homodimeric histone deacetylase (HDAC); specificity in vitro for histones H3, H4, H2A, and H2B; similar to Hda1p, Rpd3p, Hos1p, and Hos2p; deletion results in increased histone acetylation at rDNA repeats","termid":"PBO:0087971"}


id: PBO:0056405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane associated ring-CH-type finger 3","termid":"PBO:0056405"}


id: PBO:0051267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa locus","termid":"PBO:0051267"}


id: GO:0099538
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling to or from a synapse, mediated by a peptide.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synaptic signaling","termid":"GO:0099536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"synaptic signaling via neuropeptide","termid":"GO:0099538"}


id: PBO:0002132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S24 (predicted)","termid":"PBO:0002132"}


id: GO:0043574
data:
  {"annotated_genes":["SJAG_02797","SJAG_01854","SJAG_01165","SJAG_00891","SJAG_03324","SJAG_00326","SJAG_03440","SJAG_02997","SJAG_00702","SJAG_02619","SJAG_02693","SJAG_02034","SJAG_05315","SJAG_04763","SJAG_03781"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106179,92610,94370,86396,86599,107516,101359,62839],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016558"},{"annotations":[107980,93098,99223],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0016560"},{"annotations":[97429,113399],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0016562"},{"annotations":[91568,107517,86591],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045046"}]},"cv_name":"biological_process","definition":"Transport of substances into, out of or within a peroxisome, a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular transport","termid":"GO:0046907"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00326":null,"SJAG_00702":null,"SJAG_00891":null,"SJAG_01165":null,"SJAG_01854":null,"SJAG_02034":null,"SJAG_02619":null,"SJAG_02693":null,"SJAG_02797":null,"SJAG_02997":null,"SJAG_03324":null,"SJAG_03440":null,"SJAG_03781":null,"SJAG_04763":null,"SJAG_05315":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"peroxisomal transport","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"termid":"GO:0043574","terms_by_termid":{"GO:0016558":null,"GO:0016560":null,"GO:0016562":null,"GO:0045046":null}}


id: GO:0032444
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A transcriptionally active complex that binds to an activin response element (ARE) in the promoter of target genes, and is composed of two SMAD2 proteins, one SMAD4 protein and a Forkhead activin signal transducer (FAST) transcription factor.","definition_xrefs":["PMID:12374795","PMID:9288972"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription regulator complex","termid":"GO:0090575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"activin responsive factor complex","synonyms":[{"name":"ARF complex","type":"exact"}],"termid":"GO:0032444"}


id: GO:0062108
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to a non-growing cell tip.","definition_xrefs":["PMID:18328707"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to non-growing cell tip","termid":"GO:0062107"},{"relation_name":"is_a","term_name":"negative regulation of protein localization to cell tip","termid":"GO:1903067"},{"relation_name":"negatively_regulates","term_name":"protein localization to non-growing cell tip","termid":"GO:1902487"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein localization to non-growing cell tip","termid":"GO:0062108"}


id: PBO:0048796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GNAO1 divergent transcript","termid":"PBO:0048796"}


id: FYPO:0000588
data:
  {"alleles_by_uniquename":{"SJAG_02527:allele-1":{"allele_type":"disruption","description":"RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage","gene_uniquename":"SJAG_02527","name":"lig4::KanMX6","uniquename":"SJAG_02527:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115488],"is_not":false,"summary":null,"term":"FYPO:0000588"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which the frequency of occurrence of ascospore formation is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population phenotype","termid":"FYPO:0000003"},{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02527":null},"genotype_count":1,"genotypes_by_uniquename":{"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown":{"display_name":"lig4::KanMX6(RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage)[Knockdown]","display_uniquename":"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02527:allele-1","expression":"Knockdown"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"increased sporulation frequency","references_by_uniquename":{"PMID:37233261":null},"single_locus_annotated_genes":["SJAG_02527"],"single_locus_genotype_uniquenames":["lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown"],"synonyms":[{"name":"increased frequency of ascospore formation","type":"exact"},{"name":"increased sporulation","type":"exact"},{"name":"sporulation: increased","type":"related"}],"termid":"FYPO:0000588","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0000588":null}}


id: GO:0018872
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving arsonoacetate, a synthetic, organic compound containing a single arsenic atom. Arsonoacetate and other arsenic containing compounds are used in agricultural applications as animal feed additives, cotton defoliants and post-emergence grass herbicides.","definition_xrefs":["UM-BBD_pathwayID:ara"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic metabolic process","termid":"GO:0006805"},{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"arsonoacetate metabolic process","synonyms":[{"name":"arsonoacetate metabolism","type":"exact"}],"termid":"GO:0018872"}


id: PBO:0040055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin related protein 2/3 complex subunit 3 pseudogene 3","termid":"PBO:0040055"}


id: PBO:0048280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polypeptide N-acetylgalactosaminyltransferase 15","termid":"PBO:0048280"}


id: GO:0015319
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + phosphate(out) = Na+(in) + phosphate(in).","definition_xrefs":["TC:2.A.1.14.6"],"gene_count":0,"genotype_count":0,"name":"obsolete sodium:inorganic phosphate symporter activity (obsolete GO:0015319)","synonyms":[{"name":"sodium:phosphate symporter activity","type":"exact"}],"termid":"GO:0015319"}


id: PBO:0033814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"substrate-specific mitotic metaphase/anaphase APC coactivator Slp1","termid":"PBO:0033814"}


id: PBO:0059436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane spanning 4-domains A6A","termid":"PBO:0059436"}


id: PBO:0043968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crystallin zeta like 1","termid":"PBO:0043968"}


id: GO:0033637
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism modulates a change in state or activity of a host cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by symbiont of host response to cold (obsolete GO:0033637)","synonyms":[{"name":"freezing tolerance","type":"related"}],"termid":"GO:0033637"}


id: GO:0000153
data:
  {"annotated_genes":["SJAG_01051","SJAG_01134","SJAG_04384","SJAG_03345","SJAG_05274","SJAG_01709","SJAG_03841"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[113245,100095,100938,103808,105703,85431,101415],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000836"}]},"cv_name":"cellular_component","definition":"A ubiquitin ligase complex found in the cytoplasm.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin ligase complex","termid":"GO:0000151"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01051":null,"SJAG_01134":null,"SJAG_01709":null,"SJAG_03345":null,"SJAG_03841":null,"SJAG_04384":null,"SJAG_05274":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"cytoplasmic ubiquitin ligase complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0000153","terms_by_termid":{"GO:0000836":null}}


id: PBO:0071316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L27a","termid":"PBO:0071316"}


id: PBO:0079596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBE2E1 antisense RNA 1","termid":"PBO:0079596"}


id: GO:0019168
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-octaprenylphenol + NADPH + O2 + H+ = 2-octaprenyl-6-hydroxyphenol + NADP+ + H2O.","definition_xrefs":["MetaCyc:2-OCTAPRENYLPHENOL-HYDROX-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"2-octaprenylphenol hydroxylase activity","secondary_identifiers":["RHEA:27790"],"termid":"GO:0019168"}


id: GO:0004906
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with interferon-gamma (a type II interferon) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:ai","PMID:15546383","GOC:add","GOC:signaling","ISBN:0126896631"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interferon receptor activity","termid":"GO:0004904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"type II interferon receptor activity","synonyms":[{"name":"IFN-gamma receptor activity","type":"exact"},{"name":"IFNG receptor activity","type":"exact"},{"name":"interferon-gamma receptor activity","type":"exact"}],"termid":"GO:0004906"}


id: GO:0075215
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of spore encystment on host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell development","termid":"GO:0060284"},{"relation_name":"regulates","term_name":"spore encystment","termid":"GO:0075214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation of spore encystment on host","termid":"GO:0075215"}


id: PBO:0090492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane anchored protein, claudin family, predicted membrane sensor Mac1","termid":"PBO:0090492"}


id: PBO:0072200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S17 pseudogene 17","termid":"PBO:0072200"}


id: PBO:0068312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 14","termid":"PBO:0068312"}


id: PBO:0090997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome assembly protein Rsa3","termid":"PBO:0090997"}


