# genes

id: YPR170W-B
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_03962":null,"YPR170W-B":null},"has_protein_features":false,"ortholog_annotations":[{"gene_uniquename":"YPR170W-B","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_03962","reference_uniquename":"PMID:29761456"}],"product":"Putative, non-essential component vacuolar ATPase; conserved in fungi; SWAT-GFP fusion protein localizes to vacuole membrane; partially overlaps the dubious genes YPR169W-A, YPR170W-A and YRP170C","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000028515","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR170W-B"}


id: YPR171W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"name":"BSP1","product":"Adapter that links synaptojanins to the cortical actin cytoskeleton; the synaptojanins are Inp52p and Inp53p","secondary_identifier":"SGD:S000006375","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR171W"}


id: YPR172W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_02770":null,"YPR172W":null},"has_protein_features":false,"ortholog_annotations":[{"gene_uniquename":"YPR172W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_02770","reference_uniquename":"PMID:29761456"}],"product":"Protein of unknown function; predicted to encode a pyridoxal 5'-phosphate synthase based on sequence similarity but purified protein does not possess this activity, nor does it bind flavin mononucleotide (FMN); transcriptionally activated by Yrm1p along with genes involved in multidrug resistance; YPR172W has a paralog, YLR456W, that arose from the whole genome duplication","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006376","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR172W"}


id: YPR173C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_03892":null,"YPR173C":null},"has_protein_features":false,"name":"VPS4","ortholog_annotations":[{"gene_uniquename":"YPR173C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_03892","reference_uniquename":"PMID:29761456"}],"product":"AAA-ATPase involved in multivesicular body (MVB) protein sorting; ATP-bound Vps4p localizes to endosomes and catalyzes ESCRT-III disassembly and membrane release; ATPase activity is activated by Vta1p; regulates cellular sterol metabolism","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006377","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR173C"}


id: YPR174C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"name":"CSA1","product":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery; potential Cdc28p substrate; binds phosphatidylinositols and phosphatidylethanolamine in a large-scale study; relative distribution to foci at the nuclear periphery increases upon DNA replication stress; YPR174C has a paralog, NBP1, that arose from the whole genome duplication","secondary_identifier":"SGD:S000006378","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR174C"}


id: YPR175W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_02667":null,"YPR175W":null},"has_protein_features":false,"name":"DPB2","ortholog_annotations":[{"gene_uniquename":"YPR175W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_02667","reference_uniquename":"PMID:29761456"}],"product":"Second largest subunit of DNA polymerase II (DNA polymerase epsilon); required for maintenance of fidelity of chromosomal replication; essential motif in C-terminus is required for formation of the four-subunit Pol epsilon; expression peaks at the G1/S phase boundary; Cdc28p substrate","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006379","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR175W"}


id: YPR176C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_04434":null,"YPR176C":null},"has_protein_features":false,"name":"BET2","ortholog_annotations":[{"gene_uniquename":"YPR176C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_04434","reference_uniquename":"PMID:29761456"}],"product":"Beta subunit of Type II geranylgeranyltransferase; required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p; human homolog RABGGTB can complement yeast BET2 mutant","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006380","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR176C"}


id: YPR177C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"product":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the 5' end of the essential PRP4 gene encoding a component of the U4/U6-U5 snRNP complex","secondary_identifier":"SGD:S000006381","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR177C"}


id: YPR178W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_00531":null,"YPR178W":null},"has_protein_features":false,"name":"PRP4","ortholog_annotations":[{"gene_uniquename":"YPR178W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_00531","reference_uniquename":"PMID:29761456"}],"product":"Splicing factor; component of the U4/U6-U5 snRNP complex","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006382","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR178W"}


id: YPR179C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_03685":null,"YPR179C":null},"has_protein_features":false,"name":"HDA3","ortholog_annotations":[{"gene_uniquename":"YPR179C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_03685","reference_uniquename":"PMID:29761456"}],"product":"Subunit of HDA1 histone deacetylase complex; tetrameric trichostatin A-sensitive class II histone deacetylase complex contains Hda1p homodimer and an Hda2p-Hda3p heterodimer; required for activity of complex; relocalizes to cytosol in response to hypoxia; similar to Hda2p; the HDA1 histone deacetylase complex regulates aging through trehalose metabolism","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006383","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR179C"}


id: YPR180W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_05032":null,"YPR180W":null},"has_protein_features":false,"name":"AOS1","ortholog_annotations":[{"gene_uniquename":"YPR180W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_05032","reference_uniquename":"PMID:29761456"}],"product":"Subunit of heterodimeric nuclear SUMO activating enzyme E1 with Uba2p; activates Smt3p (SUMO) before its conjugation to proteins (sumoylation), which may play a role in protein targeting; essential for viability; relocalizes to the cytosol in response to hypoxia","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006384","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR180W"}


id: YPR181C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_02539":null,"SJAG_03153":null,"YPR181C":null},"has_protein_features":false,"name":"SEC23","ortholog_annotations":[{"gene_uniquename":"YPR181C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_02539","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"YPR181C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_03153","reference_uniquename":"PMID:29761456"}],"product":"GTPase-activating protein, stimulates the GTPase activity of Sar1p; component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat, involved in ER to Golgi transport; substrate of Ubp3/Bre5 complex; ubiquitylated by Ub-ligase Rsp5p; proteasome-mediated degradation of Sec23p is regulated by Cdc48p","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006385","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR181C"}


id: YPR182W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_02843":null,"YPR182W":null},"has_protein_features":false,"name":"SMX3","ortholog_annotations":[{"gene_uniquename":"YPR182W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_02843","reference_uniquename":"PMID:29761456"}],"product":"Core Sm protein Sm F; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Sme1p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm F","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006386","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR182W"}


id: YPR183W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_02903":null,"YPR183W":null},"has_protein_features":false,"name":"DPM1","ortholog_annotations":[{"gene_uniquename":"YPR183W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_02903","reference_uniquename":"PMID:29761456"}],"product":"Dolichol phosphate mannose (Dol-P-Man) synthase of ER membrane; catalyzes formation of Dol-P-Man from Dol-P and GDP-Man; required for biosynthesis of glycosyl phosphatidylinositol (GPI) membrane anchor, as well as O-mannosylation and protein N- and O-linked glycosylation; human homolog DPM1 can complement yeast mutant strains","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006387","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR183W"}


id: YPR184W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"name":"GDB1","product":"Glycogen debranching enzyme; contains glucanotranferase and alpha-1,6-amyloglucosidase activities; required for glycogen degradation; phosphorylated in mitochondria; activity is inhibited by Igd1p; protein abundance increases in response to DNA replication stress","secondary_identifier":"SGD:S000006388","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR184W"}


id: YPR185W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_01274":null,"YPR185W":null},"has_protein_features":false,"name":"ATG13","ortholog_annotations":[{"gene_uniquename":"YPR185W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_01274","reference_uniquename":"PMID:29761456"}],"product":"Regulatory subunit of the Atg1p signaling complex; stimulates Atg1p kinase activity; required for vesicle formation during autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway; contains a HORMA domain required for autophagy and for recruitment of the phosphatidylinositol 3-kinase complex subunit Atg14p to the pre-autophagosomal structure","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006389","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR185W"}


id: YPR186C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_00067":null,"YPR186C":null},"has_protein_features":false,"name":"PZF1","ortholog_annotations":[{"gene_uniquename":"YPR186C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_00067","reference_uniquename":"PMID:29761456"}],"product":"Transcription factor IIIA (TFIIIA); essential DNA binding protein required for transcription of 5S rRNA by RNA polymerase III; not involved in transcription of other RNAP III genes; nine conserved zinc fingers; may also bind 5S rRNA","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006390","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR186C"}


id: YPR187W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_04261":null,"YPR187W":null},"has_protein_features":false,"name":"RPO26","ortholog_annotations":[{"gene_uniquename":"YPR187W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_04261","reference_uniquename":"PMID:29761456"}],"product":"RNA polymerase subunit ABC23; common to RNA polymerases I, II, and III; part of central core; similar to bacterial omega subunit","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006391","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR187W"}


id: YPR188C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_01665":null,"YPR188C":null},"has_protein_features":false,"name":"MLC2","ortholog_annotations":[{"gene_uniquename":"YPR188C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_01665","reference_uniquename":"PMID:29761456"}],"product":"Regulatory light chain for the type II myosin Myo1p; binds to an IQ motif of Myo1p, localization to the bud neck depends on Myo1p; involved in the disassembly of the Myo1p ring","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006392","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR188C"}


id: YPR189W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_03805":null,"YPR189W":null},"has_protein_features":false,"name":"SKI3","ortholog_annotations":[{"gene_uniquename":"YPR189W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_03805","reference_uniquename":"PMID:29761456"}],"product":"Ski complex component and TPR protein; mediates 3'-5' RNA degradation by the cytoplasmic exosome; null mutants have superkiller phenotype of increased viral dsRNAs and are synthetic lethal with mutations in 5'-3' mRNA decay; mutations in the human ortholog, TTC37, causes Syndromic diarrhea/Trichohepatoenteric (SD/THE) syndrome","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006393","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR189W"}


id: YPR190C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_00619":null,"YPR190C":null},"has_protein_features":false,"name":"RPC82","ortholog_annotations":[{"gene_uniquename":"YPR190C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_00619","reference_uniquename":"PMID:29761456"}],"product":"RNA polymerase III subunit C82","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006394","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR190C"}


id: YPR191W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_00755":null,"YPR191W":null},"has_protein_features":false,"name":"QCR2","ortholog_annotations":[{"gene_uniquename":"YPR191W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_00755","reference_uniquename":"PMID:29761456"}],"product":"Subunit 2 of ubiquinol cytochrome-c reductase (Complex III); Complex III is a component of the mitochondrial inner membrane electron transport chain; phosphorylated; transcription is regulated by Hap1p, Hap2p/Hap3p, and heme","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006395","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR191W"}


id: YPR192W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"name":"AQY1","product":"Spore-specific water channel; mediates the transport of water across cell membranes, developmentally controlled; may play a role in spore maturation, probably by allowing water outflow, may be involved in freeze tolerance","secondary_identifier":"SGD:S000006396","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR192W"}


id: YPR193C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_03288":null,"YPR193C":null},"has_protein_features":false,"name":"HPA2","ortholog_annotations":[{"gene_uniquename":"YPR193C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_03288","reference_uniquename":"PMID:29761456"}],"product":"Tetrameric histone acetyltransferase; has similarity to Gcn5p, Hat1p, Elp3p, and Hpa3p; acetylates histones H3 and H4 in vitro and exhibits autoacetylation activity; also acetylates polyamines","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006397","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR193C"}


id: YPR194C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_00922":null,"SJAG_01660":null,"YPR194C":null},"has_protein_features":false,"name":"OPT2","ortholog_annotations":[{"gene_uniquename":"YPR194C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_00922","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"YPR194C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_01660","reference_uniquename":"PMID:29761456"}],"product":"Oligopeptide transporter; localized to peroxisomes and affects glutathione redox homeostasis; also localizes to the plasma membrane (PM) and to the late Golgi, and has a role in maintenance of lipid asymmetry between the inner and outer leaflets of the PM; member of the OPT family, with potential orthologs in S. pombe and C. albicans; also plays a role in formation of mature vacuoles and in polarized cell growth","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006398","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR194C"}


id: YPR195C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"product":"Putative protein of unknown function; conserved across S. cerevisiae strains","secondary_identifier":"SGD:S000006399","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR195C"}


id: YPR196W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"product":"Putative maltose-responsive transcription factor","secondary_identifier":"SGD:S000006400","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR196W"}


id: YPR197C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"product":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps ORF SGE1/YPR198W","secondary_identifier":"SGD:S000006401","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR197C"}


id: YPR198W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_01336":null,"SJAG_01636":null,"SJAG_01923":null,"SJAG_04715":null,"SJAG_04983":null,"YPR198W":null},"has_protein_features":false,"name":"SGE1","ortholog_annotations":[{"gene_uniquename":"YPR198W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_01336","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"YPR198W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_01636","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"YPR198W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_01923","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"YPR198W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_04715","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"YPR198W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_04983","reference_uniquename":"PMID:29761456"}],"product":"Plasma membrane multidrug transporter; member of the major facilitator superfamily; acts as an extrusion permease; partial multicopy suppressor of gal11 mutations","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006402","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR198W"}


id: YPR199C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"name":"ARR1","product":"Transcriptional activator of the basic leucine zipper (bZIP) family; required for transcription of genes involved in resistance to arsenic compounds; directly binds trivalent arsenic (As(III)) as does K. lactis ortholog, KIYAP8","secondary_identifier":"SGD:S000006403","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR199C"}


id: YPR200C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_04166":null,"YPR200C":null},"has_protein_features":false,"name":"ARR2","ortholog_annotations":[{"gene_uniquename":"YPR200C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_04166","reference_uniquename":"PMID:29761456"}],"product":"Arsenate reductase required for arsenate resistance; converts arsenate to arsenite which can then be exported from cells by Arr3p","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006404","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR200C"}


id: YPR201W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"name":"ARR3","product":"Plasma membrane metalloid/H+ antiporter; member of bile/arsenite/riboflavin transporter (BART) superfamily; transports arsenite and antimonite; required for resistance to arsenic compounds; transcription is activated by Arr1p in the presence of arsenite; protein displays 10 transmembrane segments with cytoplasmically oriented N- and C-terminal domains","secondary_identifier":"SGD:S000006405","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR201W"}


id: YPR202W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"product":"Putative protein of unknown function; similar to telomere-encoded helicases; down-regulated at low calcium levels; YPR202W is not an essential gene; transcript is predicted to be spliced but there is no evidence that it is spliced in vivo","secondary_identifier":"SGD:S000006406","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR202W"}


id: YPR203W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"product":"Putative protein of unknown function","secondary_identifier":"SGD:S000006407","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR203W"}


id: YPR204C-A
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"product":"Protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching","secondary_identifier":"SGD:S000028727","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR204C-A"}


id: YPR204W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"product":"DNA helicase encoded within the telomeric Y' element; Y' -helicase protein 1","secondary_identifier":"SGD:S000006408","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR204W"}


# alleles

id: SJAG_00028:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rga6","product":"RhoGAP for Cdc42, Rga6","uniquename":"SJAG_00028"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rga4delta rga6delta","display_uniquename":"rga4delta__rga6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]}]},{"display_name":"rga6delta","display_uniquename":"rga6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]}]},{"display_name":"rga6delta wee1-as8(T582G aa)","display_uniquename":"rga6delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"rga6delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished geometry scaling","termid":"FYPO:0007783"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abolished polar cell growth","termid":"FYPO:0004105"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000005","FYPO:0001320","FYPO:0000004","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"viable vegetative cell with increased cell diameter","termid":"FYPO:0006616"}],"references_by_uniquename":{},"uniquename":"SJAG_00028:allele-1"}


id: SJAG_00118:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mid2","product":"medial ring protein, anillin Mid2","uniquename":"SJAG_00118"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mid1delta mid2delta","display_uniquename":"mid1delta__mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]},{"display_name":"mid2delta","display_uniquename":"mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]}],"name":"mid2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000032","FYPO:0001320","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"multiseptate vegetative cell","termid":"FYPO:0000118"}],"references_by_uniquename":{},"uniquename":"SJAG_00118:allele-1"}


id: SJAG_00124:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"product":"NRG1-like transcriptional repressor, zinc finger C2H2-type","uniquename":"SJAG_00124"},"genes_by_uniquename":{},"genotypes":[{"display_name":"SJAG_00124delta","display_uniquename":"SJAG_00124delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00124:allele-1","expression":"Null"}]}]},{"display_name":"SJAG_00124delta sty1delta","display_uniquename":"SJAG_00124delta__sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00124:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}],"name":"SJAG_00124delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased mycelial expansion","termid":"FYPO:0007779"}],"references_by_uniquename":{},"uniquename":"SJAG_00124:allele-1"}


id: SJAG_00266:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"atf1","product":"DNA-binding transcription factor, Atf-CREB family Atf1","uniquename":"SJAG_00266"},"genes_by_uniquename":{},"genotypes":[{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]}],"name":"atf1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002060","FYPO:0002057","FYPO:0002058","FYPO:0000003","FYPO:0005447","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"abolished cell population growth at high temperature","termid":"FYPO:0004481"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"decreased mating efficiency","termid":"FYPO:0000708"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased quorum sensing response","termid":"FYPO:0007824"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000005","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"elongated vegetative cell","termid":"FYPO:0001122"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased hyphal branching","termid":"FYPO:0007777"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased hyphal length","termid":"FYPO:0007775"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased invasive hyphal growth","termid":"FYPO:0007774"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002683","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to caffeine during vegetative growth","termid":"FYPO:0000097"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0002683","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to latrunculin A","termid":"FYPO:0000107"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to oxidative stress","termid":"FYPO:0000726"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to salt stress","termid":"FYPO:0000271"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0002683","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to sodium dodecyl sulfate","termid":"FYPO:0000841"}],"references_by_uniquename":{},"uniquename":"SJAG_00266:allele-1"}


id: SJAG_00364:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad3","product":"ATR checkpoint kinase Rad3","uniquename":"SJAG_00364"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad3delta","display_uniquename":"rad3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00364:allele-1","expression":"Null"}]}]}],"name":"rad3delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0002683","FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0000003","FYPO:0002683","FYPO:0001985","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002057","FYPO:0002060","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_00364:allele-1"}


id: SJAG_00409:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"gpd1","product":"glycerol-3-phosphate dehydrogenase Gpd1","uniquename":"SJAG_00409"},"genes_by_uniquename":{},"genotypes":[{"display_name":"gpd1delta","display_uniquename":"gpd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00409:allele-1","expression":"Null"}]}]}],"name":"gpd1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0005568","FYPO:0001985"],"is_obsolete":false,"name":"abnormal vegetative cell polarity","termid":"FYPO:0000026"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002058","FYPO:0002060","FYPO:0005447","FYPO:0000139","FYPO:0002057"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000004"],"is_obsolete":false,"name":"inviable vegetative cell","termid":"FYPO:0001489"}],"references_by_uniquename":{},"uniquename":"SJAG_00409:allele-1"}


id: SJAG_00426:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"P363S","gene":{"name":"bbl1","product":"ER phosphatidate cytidylyltransferase Bbl1","uniquename":"SJAG_00426"},"genes_by_uniquename":{},"genotypes":[{"display_name":"bbl1-P363S(aa)","display_uniquename":"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00426:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"bbl1-P363S","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal lipid droplet morphology","termid":"FYPO:0000356"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abnormal tubular endoplasmic reticulum morphology","termid":"FYPO:0006433"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular diglyceride level","termid":"FYPO:0004695"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular triglyceride level during vegetative growth","termid":"FYPO:0002227"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0000003","FYPO:0000257","FYPO:0002057","FYPO:0002060","FYPO:0000139","FYPO:0002058"],"is_obsolete":false,"name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"references_by_uniquename":{},"uniquename":"SJAG_00426:allele-1"}


id: SJAG_00429:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad26","product":"ATRIP, ATR checkpoint kinase regulatory subunit Rad26","uniquename":"SJAG_00429"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad26delta","display_uniquename":"rad26delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00429:allele-1","expression":"Null"}]}]}],"name":"rad26delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0002683","FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002057","FYPO:0002060","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_00429:allele-1"}


id: SJAG_00514:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"scd1","product":"RhoGEF Scd1","uniquename":"SJAG_00514"},"genes_by_uniquename":{},"genotypes":[{"display_name":"scd1delta","display_uniquename":"scd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00514:allele-1","expression":"Null"}]}]}],"name":"scd1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0007773","FYPO:0001985"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abolished polar cell growth","termid":"FYPO:0004105"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002058","FYPO:0002060","FYPO:0005447","FYPO:0000139","FYPO:0002057"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002057","FYPO:0002060","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000005","FYPO:0000004"],"is_obsolete":false,"name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"references_by_uniquename":{},"uniquename":"SJAG_00514:allele-1"}


id: SJAG_00601:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rip1","product":"Rieske iron-sulfur protein, ubiquinol-cytochrome-c reductase complex subunit 5, Rip1","uniquename":"SJAG_00601"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rip1delta","display_uniquename":"rip1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00601:allele-1","expression":"Null"}]}]}],"name":"rip1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000301","FYPO:0000257"],"is_obsolete":false,"name":"normal mating","termid":"FYPO:0000760"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal spore germination","termid":"FYPO:0000579"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal sporulation","termid":"FYPO:0000590"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0000003","FYPO:0000257","FYPO:0002057","FYPO:0002060","FYPO:0000139","FYPO:0002058"],"is_obsolete":false,"name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"references_by_uniquename":{},"uniquename":"SJAG_00601:allele-1"}


id: SJAG_00610:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pck2","product":"protein kinase C (PKC)-like Pck2","uniquename":"SJAG_00610"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pck2delta","display_uniquename":"pck2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00610:allele-1","expression":"Null"}]}]}],"name":"pck2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0002494","FYPO:0002274","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein phosphorylation","termid":"FYPO:0002678"},{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001320","FYPO:0002274","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0002494"],"is_obsolete":false,"name":"decreased protein phosphorylation during vegetative growth","termid":"FYPO:0001838"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0002682","FYPO:0000139","FYPO:0000003","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003","FYPO:0002683","FYPO:0001985","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to caspofungin","termid":"FYPO:0000079"}],"references_by_uniquename":{},"uniquename":"SJAG_00610:allele-1"}


id: SJAG_00871:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"cut3-T19E","gene":{"name":"cut3","product":"condensin complex SMC subunit Smc4","uniquename":"SJAG_00871"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"cut3-T19E","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"abnormal cell cycle arrest in mitotic anaphase","termid":"FYPO:0000619"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000004"],"is_obsolete":false,"name":"inviable vegetative cell","termid":"FYPO:0001489"}],"references_by_uniquename":{},"uniquename":"SJAG_00871:allele-1"}


id: SJAG_00993:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"byr1","product":"MAP kinase kinase Byr1","uniquename":"SJAG_00993"},"genes_by_uniquename":{},"genotypes":[{"display_name":"byr1delta","display_uniquename":"byr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00993:allele-1","expression":"Null"}]}]}],"name":"byr1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_00993:allele-1"}


id: SJAG_01050:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nur1","product":"Lem2-Nur1 complex subunit Nur1","uniquename":"SJAG_01050"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nur1delta","display_uniquename":"nur1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]}]},{"display_name":"nur1delta vps4delta","display_uniquename":"nur1delta__vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}],"name":"nur1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to heterochromatin during vegetative growth","termid":"FYPO:0001132"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to nuclear envelope during vegetative growth","termid":"FYPO:0007073"}],"references_by_uniquename":{},"uniquename":"SJAG_01050:allele-1"}


id: SJAG_01081:allele-1
data:
  {"allele_type":"nonsense_mutation","alleles_by_uniquename":{},"description":"S427>stop","gene":{"name":"ade6","product":"phosphoribosylaminoimidazole carboxylase Ade6","uniquename":"SJAG_01081"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ade6-domE(S427>stop)","display_uniquename":"ade6-domE-S427>stop-nonsense_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01081:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"ade6-domE","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"growth auxotrophic for adenine","termid":"FYPO:0000747"}],"references_by_uniquename":{},"uniquename":"SJAG_01081:allele-1"}


id: SJAG_01081:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"Q262A","gene":{"name":"ade6","product":"phosphoribosylaminoimidazole carboxylase Ade6","uniquename":"SJAG_01081"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ade6-domK(Q262A aa)","display_uniquename":"ade6-domK-Q262A-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01081:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"ade6-domK","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"growth auxotrophic for adenine","termid":"FYPO:0000747"}],"references_by_uniquename":{},"uniquename":"SJAG_01081:allele-2"}


id: SJAG_01081:allele-3
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ade6","product":"phosphoribosylaminoimidazole carboxylase Ade6","uniquename":"SJAG_01081"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ade6delta","display_uniquename":"ade6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01081:allele-3","expression":"Null"}]}]}],"name":"ade6delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"growth auxotrophic for adenine","termid":"FYPO:0000747"}],"references_by_uniquename":{},"uniquename":"SJAG_01081:allele-3"}


id: SJAG_01113:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"R47K","gene":{"product":"mating-type transcription factor (Pc-like)","uniquename":"SJAG_01113"},"genes_by_uniquename":{},"genotypes":[],"name":"mat-Pc-R47K","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_01113:allele-1"}


id: SJAG_01143:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mid1","product":"anillin-related medial ring protein Mid1","uniquename":"SJAG_01143"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cdc15-A(L264P,P442T aa) mid1delta","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type__mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},{"display_name":"mid1delta","display_uniquename":"mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},{"display_name":"mid1delta mid2delta","display_uniquename":"mid1delta__mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]},{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}],"name":"mid1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0004803","FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0001320","FYPO:0000032"],"is_obsolete":false,"name":"abnormal actomyosin contractile ring myosin filament organization","termid":"FYPO:0000231"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"abnormally monopolar protein localization to cell tip","termid":"FYPO:0005503"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to medial cortex during mitotic interphase","termid":"FYPO:0007177"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0004803","FYPO:0001985","FYPO:0000631","FYPO:0005447","FYPO:0001320","FYPO:0000032","FYPO:0000002"],"is_obsolete":false,"name":"delayed onset of actomyosin contractile ring assembly","termid":"FYPO:0000729"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of protein localization to cell division site","termid":"FYPO:0003946"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000032","FYPO:0001320","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"multiseptate vegetative cell","termid":"FYPO:0000118"}],"references_by_uniquename":{},"uniquename":"SJAG_01143:allele-1"}


id: SJAG_01143:allele-2
data:
  {"allele_type":"partial_amino_acid_deletion","alleles_by_uniquename":{},"description":"711-723","gene":{"name":"mid1","product":"anillin-related medial ring protein Mid1","uniquename":"SJAG_01143"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mid1-delta(711-723 a.a.)(aa)","display_uniquename":"mid1-delta(711-723_a.a.)-711-723-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"mid1-delta(711-723 a.a.)","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000257","FYPO:0000138","FYPO:0001320","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"}],"references_by_uniquename":{},"uniquename":"SJAG_01143:allele-2"}


id: SJAG_01181:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pek1","product":"MAP kinase kinase Pek1","uniquename":"SJAG_01181"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pek1delta","display_uniquename":"pek1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01181:allele-1","expression":"Null"}]}]}],"name":"pek1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_01181:allele-1"}


id: SJAG_01205:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"crb2","product":"BRCT and tudor domain DNA checkpoint protein Crb2","uniquename":"SJAG_01205"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chk1delta crb2delta","display_uniquename":"chk1delta__crb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01205:allele-1","expression":"Null"}]}]},{"display_name":"crb2delta","display_uniquename":"crb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01205:allele-1","expression":"Null"}]}]}],"name":"crb2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0002683","FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0000003","FYPO:0002683","FYPO:0001985","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"}],"references_by_uniquename":{},"uniquename":"SJAG_01205:allele-1"}


id: SJAG_01242:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps32","product":"ESCRT III complex subunit Vps32","uniquename":"SJAG_01242"},"genes_by_uniquename":{},"genotypes":[{"display_name":"vps32delta","display_uniquename":"vps32delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01242:allele-1","expression":"Null"}]}]}],"name":"vps32delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002057","FYPO:0002060","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_01242:allele-1"}


id: SJAG_01330:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mad2","product":"mitotic spindle checkpoint protein Mad2","uniquename":"SJAG_01330"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mad2delta","display_uniquename":"mad2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01330:allele-1","expression":"Null"}]}]}],"name":"mad2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0000298","FYPO:0000631","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished mitotic spindle assembly checkpoint","termid":"FYPO:0004318"}],"references_by_uniquename":{},"uniquename":"SJAG_01330:allele-1"}


id: SJAG_01355:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"cox6","product":"cytochrome c oxidase subunit VI","uniquename":"SJAG_01355"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cox6delta","display_uniquename":"cox6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01355:allele-1","expression":"Null"}]}]}],"name":"cox6delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000301","FYPO:0000257"],"is_obsolete":false,"name":"normal mating","termid":"FYPO:0000760"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal spore germination","termid":"FYPO:0000579"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal sporulation","termid":"FYPO:0000590"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0000003","FYPO:0000257","FYPO:0002057","FYPO:0002060","FYPO:0000139","FYPO:0002058"],"is_obsolete":false,"name":"normal vegetative cell population growth","termid":"FYPO:0001357"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002057","FYPO:0002060","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_01355:allele-1"}


id: SJAG_01374:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nup132","product":"nucleoporin, WD repeat Nup132","uniquename":"SJAG_01374"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nup132delta","display_uniquename":"nup132delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01374:allele-1","expression":"Null"}]}]}],"name":"nup132delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal nuclear pore localization","termid":"FYPO:0003973"}],"references_by_uniquename":{},"uniquename":"SJAG_01374:allele-1"}


id: SJAG_01410:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad51","product":"RecA family recombinase Rad51/Rhp51","uniquename":"SJAG_01410"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad51delta","display_uniquename":"rad51delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01410:allele-1","expression":"Null"}]}]}],"name":"rad51delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0002683","FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"}],"references_by_uniquename":{},"uniquename":"SJAG_01410:allele-1"}


id: SJAG_01458:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"acb1","product":"fatty-acyl-CoA binding protein Acb1","uniquename":"SJAG_01458"},"genes_by_uniquename":{},"genotypes":[{"display_name":"acb1delta","display_uniquename":"acb1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01458:allele-1","expression":"Null"}]}]}],"name":"acb1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0000257"],"is_obsolete":false,"name":"normal fatty acid synthase activity","termid":"FYPO:0000719"}],"references_by_uniquename":{},"uniquename":"SJAG_01458:allele-1"}


id: SJAG_01539:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nde1","product":"external mitochondrial NADH dehydrogenase (ubiquinone) Nde1/Nde2","uniquename":"SJAG_01539"},"genes_by_uniquename":{},"genotypes":[],"name":"nde1delta","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_01539:allele-1"}


id: SJAG_01605:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad9","product":"checkpoint clamp complex protein Rad9","uniquename":"SJAG_01605"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad9delta","display_uniquename":"rad9delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01605:allele-1","expression":"Null"}]}]}],"name":"rad9delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0002683","FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"}],"references_by_uniquename":{},"uniquename":"SJAG_01605:allele-1"}


id: SJAG_01680:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"chk1","product":"Chk1 protein kinase","uniquename":"SJAG_01680"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chk1delta","display_uniquename":"chk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-1","expression":"Null"}]}]},{"display_name":"chk1delta crb2delta","display_uniquename":"chk1delta__crb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01205:allele-1","expression":"Null"}]}]}],"name":"chk1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0002683","FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0000003","FYPO:0002683","FYPO:0001985","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"}],"references_by_uniquename":{},"uniquename":"SJAG_01680:allele-1"}


id: SJAG_01680:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"P470L","gene":{"name":"chk1","product":"Chk1 protein kinase","uniquename":"SJAG_01680"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chk1-P470L(aa)","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"chk1-P470L(aa) rad24delta","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}]}],"name":"chk1-P470L","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased invasive hyphal growth","termid":"FYPO:0007774"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"}],"references_by_uniquename":{},"synonyms":[{"name":"chk1- hyperactive (chk1-hyp)","reference":"PMID:23090706","type":"exact"},{"name":"chk1-hyperactive (chk1-hyp)","reference":"PMID:20368354","type":"exact"}],"uniquename":"SJAG_01680:allele-2"}


id: SJAG_01718:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"byr2","product":"MAP kinase kinase kinase Byr2","uniquename":"SJAG_01718"},"genes_by_uniquename":{},"genotypes":[{"display_name":"byr2delta","display_uniquename":"byr2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01718:allele-1","expression":"Null"}]}]}],"name":"byr2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_01718:allele-1"}


id: SJAG_01745:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"lem2","product":"LEM domain nuclear inner membrane protein Heh1/Lem2","uniquename":"SJAG_01745"},"genes_by_uniquename":{},"genotypes":[{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]}],"name":"lem2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0002403","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology during mitosis","termid":"FYPO:0003779"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization","termid":"FYPO:0001375"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"protein mislocalized to endoplasmic reticulum during vegetative growth","termid":"FYPO:0003657"}],"references_by_uniquename":{},"uniquename":"SJAG_01745:allele-1"}


id: SJAG_01753:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mdh1","product":"malate dehydrogenase Mdh1","uniquename":"SJAG_01753"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mdh1delta","display_uniquename":"mdh1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01753:allele-1","expression":"Null"}]}]}],"name":"mdh1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_01753:allele-1"}


id: SJAG_01787:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pck1","product":"protein kinase C (PKC)-like Pck1","uniquename":"SJAG_01787"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pck1delta","display_uniquename":"pck1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]}]},{"display_name":"pck1delta pmk1delta","display_uniquename":"pck1delta__pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]}],"name":"pck1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased hyphal length","termid":"FYPO:0007775"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased mycelial expansion","termid":"FYPO:0007779"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002494","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0002274"],"is_obsolete":false,"name":"increased protein phosphorylation during vegetative growth","termid":"FYPO:0001038"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000003","FYPO:0002682","FYPO:0000139"],"is_obsolete":false,"name":"resistance to caspofungin","termid":"FYPO:0005152"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0002683","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to tacrolimus and magnesium chloride","termid":"FYPO:0007522"}],"references_by_uniquename":{},"uniquename":"SJAG_01787:allele-1"}


id: SJAG_01794:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"scd2","product":"Cdc42 GTPase complex scaffold subunit Scd2","uniquename":"SJAG_01794"},"genes_by_uniquename":{},"genotypes":[{"display_name":"scd2delta","display_uniquename":"scd2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01794:allele-1","expression":"Null"}]}]}],"name":"scd2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0007773","FYPO:0001985"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002058","FYPO:0002060","FYPO:0005447","FYPO:0000139","FYPO:0002057"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000005","FYPO:0000004"],"is_obsolete":false,"name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"references_by_uniquename":{},"uniquename":"SJAG_01794:allele-1"}


id: SJAG_01834:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pom152","product":"nucleoporin, transmembrane ring glycoprotein subunit Pom152","uniquename":"SJAG_01834"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pom152delta","display_uniquename":"pom152delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01834:allele-1","expression":"Null"}]}]}],"name":"pom152delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","termid":"FYPO:0004890"}],"references_by_uniquename":{},"uniquename":"SJAG_01834:allele-1"}


id: SJAG_01906:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nem1","product":"serine/threonine protein phosphatase (Nem1-Spo7 complex) catalytic subunit Nem1","uniquename":"SJAG_01906"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nem1delta","display_uniquename":"nem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01906:allele-1","expression":"Null"}]}]}],"name":"nem1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0002403","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"uniquename":"SJAG_01906:allele-1"}


id: SJAG_01946:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"cem1","product":"3-oxoacyl-[acyl-carrier-protein]-synthase condensing enzyme Cem1","uniquename":"SJAG_01946"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts) cem1delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]},{"display_name":"cem1delta","display_uniquename":"cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]}],"name":"cem1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0002060","FYPO:0001985","FYPO:0000139","FYPO:0000003","FYPO:0002057","FYPO:0002058","FYPO:0005447"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000003","FYPO:0002060","FYPO:0002058","FYPO:0000257","FYPO:0002057","FYPO:0000139"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"}],"references_by_uniquename":{},"uniquename":"SJAG_01946:allele-1"}


id: SJAG_01956:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"E405K ts","gene":{"name":"nuc2","product":"anaphase-promoting complex TPR lobe subcomplex subunit Apc3","uniquename":"SJAG_01956"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"nuc2-1051","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased duration of mitotic anaphase","secondary_identifiers":["FYPO:0000617"],"termid":"FYPO:0000618"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0006551","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"increased protein level during vegetative growth","secondary_identifiers":["FYPO:0000762"],"termid":"FYPO:0001327"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0002057"],"is_obsolete":false,"name":"loss of viability at high temperature","termid":"FYPO:0001387"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"mitotic metaphase/anaphase transition delay","secondary_identifiers":["FYPO:0000393","FYPO:0004309"],"termid":"FYPO:0000324"}],"references_by_uniquename":{},"uniquename":"SJAG_01956:allele-1"}


id: SJAG_02007:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"etr1","product":"enoyl-[acyl-carrier protein] reductase","uniquename":"SJAG_02007"},"genes_by_uniquename":{},"genotypes":[],"name":"etr1delta","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_02007:allele-1"}


id: SJAG_02013:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pyp1","product":"protein tyrosine phosphatase Pyp1","uniquename":"SJAG_02013"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pyp1delta","display_uniquename":"pyp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02013:allele-1","expression":"Null"}]}]}],"name":"pyp1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"decreased hyphal branching","termid":"FYPO:0007778"},{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0000004","FYPO:0000002","FYPO:0001985","FYPO:0000005"],"is_obsolete":false,"name":"viable small vegetative cell","termid":"FYPO:0000648"}],"references_by_uniquename":{},"uniquename":"SJAG_02013:allele-1"}


id: SJAG_02252:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ace2","product":"DNA-binding transcription factor Ace2","uniquename":"SJAG_02252"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ace2delta","display_uniquename":"ace2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02252:allele-1","expression":"Null"}]}]}],"name":"ace2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abolished cell separation after cytokinesis","termid":"FYPO:0006557"}],"references_by_uniquename":{},"uniquename":"SJAG_02252:allele-1"}


id: SJAG_02266:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad24","product":"14-3-3 protein Rad24","uniquename":"SJAG_02266"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chk1-P470L(aa) rad24delta","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}]},{"display_name":"rad24delta","display_uniquename":"rad24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}]}],"name":"rad24delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"}],"references_by_uniquename":{},"uniquename":"SJAG_02266:allele-1"}


id: SJAG_02342:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wis1","product":"MAP kinase kinase Wis1","uniquename":"SJAG_02342"},"genes_by_uniquename":{},"genotypes":[{"display_name":"wis1delta","display_uniquename":"wis1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02342:allele-1","expression":"Null"}]}]}],"name":"wis1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02342:allele-1"}


id: SJAG_02379:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"gap1","product":"RasGAP Gap1","uniquename":"SJAG_02379"},"genes_by_uniquename":{},"genotypes":[{"display_name":"gap1delta","display_uniquename":"gap1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02379:allele-1","expression":"Null"}]}]}],"name":"gap1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0007773","FYPO:0001985"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02379:allele-1"}


id: SJAG_02392:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pom1","product":"DYRK family cell polarity protein kinase Pom1","uniquename":"SJAG_02392"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}],"name":"pom1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein localization to medial cortex during vegetative growth","termid":"FYPO:0000731"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"abnormally monopolar protein localization to cell tip","termid":"FYPO:0005503"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to medial cortex during mitotic interphase","termid":"FYPO:0007177"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0004803","FYPO:0000631","FYPO:0000138","FYPO:0000032","FYPO:0001985"],"is_obsolete":false,"name":"actomyosin contractile ring displaced from midpoint","termid":"FYPO:0002026"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"decreased bipolar index","termid":"FYPO:0003535"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0004803","FYPO:0001985","FYPO:0000631","FYPO:0005447","FYPO:0001320","FYPO:0000032","FYPO:0000002"],"is_obsolete":false,"name":"delayed onset of actomyosin contractile ring assembly","termid":"FYPO:0000729"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"mislocalized hyphal septum","termid":"FYPO:0007801"}],"references_by_uniquename":{},"uniquename":"SJAG_02392:allele-1"}


id: SJAG_02409:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"stc1","product":"CLRC complex-Argonaute linker protein Stc1","uniquename":"SJAG_02409"},"genes_by_uniquename":{},"genotypes":[{"display_name":"stc1delta","display_uniquename":"stc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02409:allele-1","expression":"Null"}]}]}],"name":"stc1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0002059","FYPO:0000003"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_02409:allele-1"}


id: SJAG_02486:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ste6","product":"RasGEF Ste6","uniquename":"SJAG_02486"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ste6delta","display_uniquename":"ste6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02486:allele-1","expression":"Null"}]}]}],"name":"ste6delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02486:allele-1"}


id: SJAG_02527:allele-1
data:
  {"allele_type":"disruption","alleles_by_uniquename":{},"description":"RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage","gene":{"name":"lig4","product":"DNA repair ligase Lig4","uniquename":"SJAG_02527"},"genes_by_uniquename":{},"genotypes":[{"display_name":"lig4::KanMX6(RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage)[Knockdown]","display_uniquename":"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02527:allele-1","expression":"Knockdown"}]}]}],"name":"lig4::KanMX6","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased flocculation during vegetative growth","termid":"FYPO:0009111"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"increased sporulation frequency","termid":"FYPO:0000588"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0002057"],"is_obsolete":false,"name":"loss of viability following cellular response to UV","termid":"FYPO:0005705"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0001985"],"is_obsolete":false,"name":"loss of viability in stationary phase upon glucose starvation","termid":"FYPO:0005231"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002683","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to caffeine during vegetative growth","termid":"FYPO:0000097"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002057","FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0000003","FYPO:0002060","FYPO:0002058"],"is_obsolete":false,"name":"sensitive to heat shock","termid":"FYPO:0001408"}],"references_by_uniquename":{},"uniquename":"SJAG_02527:allele-1"}


id: SJAG_02576:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad25","product":"14-3-3 protein Rad25","uniquename":"SJAG_02576"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad25delta","display_uniquename":"rad25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02576:allele-1","expression":"Null"}]}]}],"name":"rad25delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"}],"references_by_uniquename":{},"uniquename":"SJAG_02576:allele-1"}


id: SJAG_02592:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"sty1","product":"MAP kinase Sty1","uniquename":"SJAG_02592"},"genes_by_uniquename":{},"genotypes":[{"display_name":"SJAG_00124delta sty1delta","display_uniquename":"SJAG_00124delta__sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00124:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]},{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}],"name":"sty1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0004803","FYPO:0000032","FYPO:0000631","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abolished actomyosin contractile ring assembly, clumped medial cortical nodes","termid":"FYPO:0002998"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002060","FYPO:0002057","FYPO:0002058","FYPO:0000003","FYPO:0005447","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"abolished cell population growth at high temperature","termid":"FYPO:0004481"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased quorum sensing response","termid":"FYPO:0007824"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000005","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"elongated vegetative cell","termid":"FYPO:0001122"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased hyphal branching","termid":"FYPO:0007777"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased hyphal length","termid":"FYPO:0007775"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased invasive hyphal growth","termid":"FYPO:0007774"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased mycelial expansion","termid":"FYPO:0007779"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0002274","FYPO:0005447","FYPO:0002494","FYPO:0001985"],"is_obsolete":false,"name":"increased protein phosphorylation","termid":"FYPO:0002680"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002683","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to caffeine during vegetative growth","termid":"FYPO:0000097"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0002683","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to latrunculin A","termid":"FYPO:0000107"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to oxidative stress","termid":"FYPO:0000726"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to salt stress","termid":"FYPO:0000271"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02592:allele-1"}


id: SJAG_02594:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"arb1","product":"argonaute inhibitor protein 1","uniquename":"SJAG_02594"},"genes_by_uniquename":{},"genotypes":[{"display_name":"arb1delta","display_uniquename":"arb1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02594:allele-1","expression":"Null"}]}]}],"name":"arb1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0002059","FYPO:0000003"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_02594:allele-1"}


id: SJAG_02621:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ago1","product":"argonaute","uniquename":"SJAG_02621"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ago1delta","display_uniquename":"ago1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]}]},{"display_name":"ago1delta leo1delta","display_uniquename":"ago1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]}],"name":"ago1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased centromeric transcript level","termid":"FYPO:0004982"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"increased telomeric transcript level","termid":"FYPO:0004573"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0002059","FYPO:0000003"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal histone H3-K9 dimethylation at transposable element during vegetative growth","termid":"FYPO:0006989"},{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_02621:allele-1"}


id: SJAG_02668:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"R77W","gene":{"name":"mpe1","product":"mRNA cleavage ubiquitin-protein ligase E3 Mpe1","uniquename":"SJAG_02668"},"genes_by_uniquename":{},"genotypes":[{"display_name":"dcr1delta mpe1-R77W(aa)","display_uniquename":"dcr1delta__mpe1-R77W-R77W-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02668:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"mpe1-R77W","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_02668:allele-1"}


id: SJAG_02695:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"tip1","product":"CLIP170 family protein Tip1","uniquename":"SJAG_02695"},"genes_by_uniquename":{},"genotypes":[{"display_name":"tip1delta","display_uniquename":"tip1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02695:allele-1","expression":"Null"}]}]}],"name":"tip1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"mislocalized septum","termid":"FYPO:0004293"}],"references_by_uniquename":{},"uniquename":"SJAG_02695:allele-1"}


id: SJAG_02763:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1delta","display_uniquename":"ned1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-1","expression":"Null"}]}]}],"name":"ned1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0002403","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002057","FYPO:0002060","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_02763:allele-1"}


id: SJAG_02763:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"D422E,D424E","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1cat(D422E,D424E aa)","display_uniquename":"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"ned1cat","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0002403","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"synonyms":[{"name":"Catalytic mutant","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-2"}


id: SJAG_02763:allele-3
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"S235A; S651","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1S235A/S651(S235A; S651 aa)","display_uniquename":"ned1S235A_S651-S235A__S651-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"ned1S235A/S651","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased lipid droplet formation","termid":"FYPO:0006945"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal nuclear envelope morphology","termid":"FYPO:0003751"}],"references_by_uniquename":{},"synonyms":[{"name":"refractory to phosphorylation","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-3"}


id: SJAG_02763:allele-4
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"S235E; S651E","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1S235E/S651E(S235E; S651E aa)","display_uniquename":"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-4","expression":"Not assayed or wild type"}]}]}],"name":"ned1S235E/S651E","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased lipid droplet formation","termid":"FYPO:0006054"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0002403","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"}


id: SJAG_02763:allele-5
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"S499E; S538E; T620E; T638E; S651E","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1-5E(S499E; S538E; T620E; T638E; S651E aa)","display_uniquename":"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-5","expression":"Not assayed or wild type"}]}]}],"name":"ned1-5E","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased lipid droplet formation","termid":"FYPO:0006054"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0002403","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"uniquename":"SJAG_02763:allele-5"}


id: SJAG_02763:allele-6
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"S499A; S538A; T620A; T638A; S651A","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1-5A(S499A; S538A; T620A; T638A; S651A aa)","display_uniquename":"ned1-5A-S499A__S538A__T620A__T638A__S651A-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-6","expression":"Not assayed or wild type"}]}]}],"name":"ned1-5A","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased lipid droplet formation","termid":"FYPO:0006945"}],"references_by_uniquename":{},"synonyms":[{"name":"refractory to potential proline-directed kinase phosphorylation","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-6"}


id: SJAG_02771:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad1","product":"checkpoint clamp complex protein Rad1","uniquename":"SJAG_02771"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad1delta","display_uniquename":"rad1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02771:allele-1","expression":"Null"}]}]}],"name":"rad1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"}],"references_by_uniquename":{},"uniquename":"SJAG_02771:allele-1"}


id: SJAG_02796:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"A343T","gene":{"name":"pyk1","product":"pyruvate kinase","uniquename":"SJAG_02796"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pyk1-A343T(aa)","display_uniquename":"pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02796:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"pyk1-A343T","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000661","FYPO:0001985","FYPO:0000707","FYPO:0005447","FYPO:0000652","FYPO:0000002","FYPO:0000654"],"is_obsolete":false,"name":"abnormal pyruvate kinase activity","termid":"FYPO:0007363"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal glucose consumption","termid":"FYPO:0004165"}],"references_by_uniquename":{},"uniquename":"SJAG_02796:allele-1"}


id: SJAG_02819:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"efc25","product":"Ras1 GEF Efc25","uniquename":"SJAG_02819"},"genes_by_uniquename":{},"genotypes":[{"display_name":"efc25delta","display_uniquename":"efc25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02819:allele-1","expression":"Null"}]}]}],"name":"efc25delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0007773","FYPO:0001985"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"decreased sporulation frequency","termid":"FYPO:0000584"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000005","FYPO:0000004"],"is_obsolete":false,"name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"references_by_uniquename":{},"uniquename":"SJAG_02819:allele-1"}


id: SJAG_02860:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wcs1","product":"blue light photoreceptor Wcs1","uniquename":"SJAG_02860"},"genes_by_uniquename":{},"genotypes":[{"display_name":"wcs1delta","display_uniquename":"wcs1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02860:allele-1","expression":"Null"}]}]}],"name":"wcs1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000298","FYPO:0000002"],"is_obsolete":false,"name":"abnormal blue light response","termid":"FYPO:0008031"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003"],"is_obsolete":false,"name":"decreased sexual agglutination in response to blue light","termid":"FYPO:0008046"}],"references_by_uniquename":{},"uniquename":"SJAG_02860:allele-1"}


id: SJAG_02923:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"spk1","product":"MAP kinase Spk1","uniquename":"SJAG_02923"},"genes_by_uniquename":{},"genotypes":[{"display_name":"spk1delta","display_uniquename":"spk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02923:allele-1","expression":"Null"}]}]}],"name":"spk1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":25,"genotype_count":31,"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"abnormal hyphal growth","termid":"FYPO:0007773"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02923:allele-1"}


id: SJAG_03048:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"G146D","gene":{"name":"cdc2","product":"cyclin-dependent protein kinase Cdk1/Cdc2","uniquename":"SJAG_03048"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cdc2-1w(G146D aa)","display_uniquename":"cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03048:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"cdc2-1w","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0000004","FYPO:0000002","FYPO:0001985","FYPO:0000005"],"is_obsolete":false,"name":"viable small vegetative cell","termid":"FYPO:0000648"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000004","FYPO:0001985","FYPO:0000005"],"is_obsolete":false,"name":"viable thin vegetative cell","termid":"FYPO:0001877"}],"references_by_uniquename":{},"uniquename":"SJAG_03048:allele-1"}


id: SJAG_03118:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"leo1","product":"RNA polymerase II associated Paf1 complex subunit Leo1","uniquename":"SJAG_03118"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ago1delta leo1delta","display_uniquename":"ago1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},{"display_name":"clr4delta leo1delta","display_uniquename":"clr4delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04574:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},{"display_name":"dcr1delta leo1delta","display_uniquename":"dcr1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]}],"name":"leo1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased centromeric transcript level","termid":"FYPO:0004982"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"increased telomeric transcript level","termid":"FYPO:0004573"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0002059","FYPO:0000003"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal histone H3-K9 dimethylation at transposable element during vegetative growth","termid":"FYPO:0006989"},{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_03118:allele-1"}


id: SJAG_03118:allele-2
data:
  {"allele_type":"nonsense_mutation","alleles_by_uniquename":{},"description":"aa61->stop","gene":{"name":"leo1","product":"RNA polymerase II associated Paf1 complex subunit Leo1","uniquename":"SJAG_03118"},"genes_by_uniquename":{},"genotypes":[{"display_name":"dcr1delta frameshift(aa61->stop)","display_uniquename":"dcr1delta__frameshift-aa61->stop-nonsense_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"frameshift","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_03118:allele-2"}


id: SJAG_03143:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"sep1","product":"DNA-binding forkhead transcription factor Sep1","uniquename":"SJAG_03143"},"genes_by_uniquename":{},"genotypes":[{"display_name":"sep1delta","display_uniquename":"sep1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03143:allele-1","expression":"Null"}]}]}],"name":"sep1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abolished cell separation after cytokinesis","termid":"FYPO:0006557"}],"references_by_uniquename":{},"uniquename":"SJAG_03143:allele-1"}


id: SJAG_03164:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ura4","product":"orotidine 5'-phosphate decarboxylase Ura4","uniquename":"SJAG_03164"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ura4delta","display_uniquename":"ura4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03164:allele-1","expression":"Null"}]}]}],"name":"ura4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"growth auxotrophic for uracil","termid":"FYPO:0001012"}],"references_by_uniquename":{},"uniquename":"SJAG_03164:allele-1"}


id: SJAG_03198:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"oar2","product":"3-oxoacyl-[acyl-carrier-protein] reductase Oar2","uniquename":"SJAG_03198"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts) oar2delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]},{"display_name":"oar2delta","display_uniquename":"oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]}],"name":"oar2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0002060","FYPO:0001985","FYPO:0000139","FYPO:0000003","FYPO:0002057","FYPO:0002058","FYPO:0005447"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000003","FYPO:0002060","FYPO:0002058","FYPO:0000257","FYPO:0002057","FYPO:0000139"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"}],"references_by_uniquename":{},"uniquename":"SJAG_03198:allele-1"}


id: SJAG_03198:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"Y189D cold sensitive","gene":{"name":"oar2","product":"3-oxoacyl-[acyl-carrier-protein] reductase Oar2","uniquename":"SJAG_03198"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts) oar2-51(Y189D cold sensitive)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"oar2-51(Y189D cold sensitive)[Overexpression]","display_uniquename":"oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Overexpression"}]}]}],"name":"oar2-51","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0002060","FYPO:0001985","FYPO:0000139","FYPO:0000003","FYPO:0002057","FYPO:0002058","FYPO:0005447"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000003","FYPO:0002060","FYPO:0002058","FYPO:0000257","FYPO:0002057","FYPO:0000139"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"}],"references_by_uniquename":{},"uniquename":"SJAG_03198:allele-2"}


id: SJAG_03198:allele-3
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"R72A,L75A,R106A,L109A","gene":{"name":"oar2","product":"3-oxoacyl-[acyl-carrier-protein] reductase Oar2","uniquename":"SJAG_03198"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts) oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]},{"display_name":"oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]}],"name":"oar2-dm12","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0002060","FYPO:0001985","FYPO:0000139","FYPO:0000003","FYPO:0002057","FYPO:0002058","FYPO:0005447"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000003","FYPO:0002060","FYPO:0002058","FYPO:0000257","FYPO:0002057","FYPO:0000139"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"}],"references_by_uniquename":{},"synonyms":[{"name":"destruction box mutations","reference":"PMID:23786411","type":"exact"}],"uniquename":"SJAG_03198:allele-3"}


id: SJAG_03250:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"sst4","product":"sorting receptor for ubiquitinated membrane proteins, ESCRT 0 complex subunit Sst4","uniquename":"SJAG_03250"},"genes_by_uniquename":{},"genotypes":[{"display_name":"sst4delta","display_uniquename":"sst4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03250:allele-1","expression":"Null"}]}]}],"name":"sst4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein complex localization","termid":"FYPO:0001440"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal nuclear envelope morphology during mitosis","termid":"FYPO:0003780"}],"references_by_uniquename":{},"uniquename":"SJAG_03250:allele-1"}


id: SJAG_03351:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"A186T ts","gene":{"name":"cut23","product":"anaphase-promoting complex TPR lobe subcomplex subunit Apc8","uniquename":"SJAG_03351"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"cut23-415","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased duration of mitotic anaphase","secondary_identifiers":["FYPO:0000617"],"termid":"FYPO:0000618"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0006551","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"increased protein level during vegetative growth","secondary_identifiers":["FYPO:0000762"],"termid":"FYPO:0001327"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0002057"],"is_obsolete":false,"name":"loss of viability at high temperature","termid":"FYPO:0001387"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"mitotic metaphase/anaphase transition delay","secondary_identifiers":["FYPO:0000393","FYPO:0004309"],"termid":"FYPO:0000324"}],"references_by_uniquename":{},"uniquename":"SJAG_03351:allele-1"}


id: SJAG_03356:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rdp1","product":"RNA-directed RNA polymerase (RDRC) Rdp1","uniquename":"SJAG_03356"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rdp1delta","display_uniquename":"rdp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03356:allele-1","expression":"Null"}]}]}],"name":"rdp1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0002059","FYPO:0000003"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_03356:allele-1"}


id: SJAG_03384:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wis4","product":"MAP kinase kinase kinase Wis4","uniquename":"SJAG_03384"},"genes_by_uniquename":{},"genotypes":[{"display_name":"wis4delta","display_uniquename":"wis4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03384:allele-1","expression":"Null"}]}]}],"name":"wis4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_03384:allele-1"}


id: SJAG_03444:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"agn1","product":"cell wall glucan endo-1,3-alpha-glucosidase Agn1","uniquename":"SJAG_03444"},"genes_by_uniquename":{},"genotypes":[{"display_name":"agn1delta","display_uniquename":"agn1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03444:allele-1","expression":"Null"}]}]}],"name":"agn1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal cell separation after cytokinesis resulting in chained cells","termid":"FYPO:0001971"}],"references_by_uniquename":{},"uniquename":"SJAG_03444:allele-1"}


id: SJAG_03449:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"man1","product":"LEM domain nuclear inner membrane protein Man1, Sad1 interacting factor","uniquename":"SJAG_03449"},"genes_by_uniquename":{},"genotypes":[{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]}],"name":"man1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0002403","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology during mitosis","termid":"FYPO:0003779"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000641","FYPO:0000631","FYPO:0005447","FYPO:0001985","FYPO:0000337"],"is_obsolete":false,"name":"abnormal rDNA separation","termid":"FYPO:0000671"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","termid":"FYPO:0004890"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002057","FYPO:0002060","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"unequal nucleolus inheritance","termid":"FYPO:0004683"}],"references_by_uniquename":{},"uniquename":"SJAG_03449:allele-1"}


id: SJAG_03449:allele-2
data:
  {"allele_type":"partial_amino_acid_deletion","alleles_by_uniquename":{},"description":"man1DHEH","gene":{"name":"man1","product":"LEM domain nuclear inner membrane protein Man1, Sad1 interacting factor","uniquename":"SJAG_03449"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Man1DHEH(man1DHEH)","display_uniquename":"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"Man1DHEH","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0002403","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology during mitosis","termid":"FYPO:0003779"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000641","FYPO:0000631","FYPO:0005447","FYPO:0001985","FYPO:0000337"],"is_obsolete":false,"name":"abnormal rDNA separation","termid":"FYPO:0000671"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","termid":"FYPO:0004890"}],"references_by_uniquename":{},"uniquename":"SJAG_03449:allele-2"}


id: SJAG_03449:allele-3
data:
  {"allele_type":"amino_acid_insertion_and_deletion","alleles_by_uniquename":{},"description":"man1-1-488","gene":{"name":"man1","product":"LEM domain nuclear inner membrane protein Man1, Sad1 interacting factor","uniquename":"SJAG_03449"},"genes_by_uniquename":{},"genotypes":[{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"man1-1-488","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0002403","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology during mitosis","termid":"FYPO:0003779"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000641","FYPO:0000631","FYPO:0005447","FYPO:0001985","FYPO:0000337"],"is_obsolete":false,"name":"abnormal rDNA separation","termid":"FYPO:0000671"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","termid":"FYPO:0004890"}],"references_by_uniquename":{},"uniquename":"SJAG_03449:allele-3"}


id: SJAG_03453:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ras1","product":"GTPase Ras1","uniquename":"SJAG_03453"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ras1delta","display_uniquename":"ras1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03453:allele-1","expression":"Null"}]}]}],"name":"ras1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0007773","FYPO:0001985"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002058","FYPO:0002060","FYPO:0005447","FYPO:0000139","FYPO:0002057"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000005","FYPO:0000004"],"is_obsolete":false,"name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"references_by_uniquename":{},"uniquename":"SJAG_03453:allele-1"}


id: SJAG_03575:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"E548K ts","gene":{"name":"apc2","product":"anaphase-promoting complex cullin family subunit Apc2","uniquename":"SJAG_03575"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"apc2-361(E548K ts) cem1delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]},{"display_name":"apc2-361(E548K ts) oar2-51(Y189D cold sensitive)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"apc2-361(E548K ts) oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]},{"display_name":"apc2-361(E548K ts) oar2delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]}],"name":"apc2-361","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased duration of mitotic anaphase","secondary_identifiers":["FYPO:0000617"],"termid":"FYPO:0000618"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0006551","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"increased protein level during vegetative growth","secondary_identifiers":["FYPO:0000762"],"termid":"FYPO:0001327"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0002057"],"is_obsolete":false,"name":"loss of viability at high temperature","termid":"FYPO:0001387"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"mitotic metaphase/anaphase transition delay","secondary_identifiers":["FYPO:0000393","FYPO:0004309"],"termid":"FYPO:0000324"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000003","FYPO:0002060","FYPO:0002058","FYPO:0000257","FYPO:0002057","FYPO:0000139"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"unequal nucleolus inheritance","termid":"FYPO:0004683"}],"references_by_uniquename":{},"uniquename":"SJAG_03575:allele-1"}


id: SJAG_03581:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"gef1","product":"RhoGEF for Cdc42 (Gef1)","uniquename":"SJAG_03581"},"genes_by_uniquename":{},"genotypes":[{"display_name":"gef1delta","display_uniquename":"gef1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03581:allele-1","expression":"Null"}]}]}],"name":"gef1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000004","FYPO:0001985","FYPO:0000005"],"is_obsolete":false,"name":"viable thin vegetative cell","termid":"FYPO:0001877"}],"references_by_uniquename":{},"uniquename":"SJAG_03581:allele-1"}


id: SJAG_03596:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"L264P,P442T","gene":{"name":"cdc15","product":"F-BAR domain protein Cdc15","uniquename":"SJAG_03596"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cdc15-A(L264P,P442T aa)","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"cdc15-A(L264P,P442T aa) mid1delta","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type__mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]}],"name":"cdc15-A","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0004803","FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0001320","FYPO:0000032"],"is_obsolete":false,"name":"abnormal actomyosin contractile ring myosin filament organization","termid":"FYPO:0000231"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of protein localization to cell division site","termid":"FYPO:0003946"}],"references_by_uniquename":{},"uniquename":"SJAG_03596:allele-1"}


id: SJAG_03689:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"dcr1","product":"dicer","uniquename":"SJAG_03689"},"genes_by_uniquename":{},"genotypes":[{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]},{"display_name":"dcr1delta frameshift(aa61->stop)","display_uniquename":"dcr1delta__frameshift-aa61->stop-nonsense_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"dcr1delta leo1delta","display_uniquename":"dcr1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},{"display_name":"dcr1delta mpe1-R77W(aa)","display_uniquename":"dcr1delta__mpe1-R77W-R77W-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02668:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"dcr1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0006551","FYPO:0001320"],"is_obsolete":false,"name":"decreased siRNA level","termid":"FYPO:0004205"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased centromeric transcript level","termid":"FYPO:0004982"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased rate of transposition","termid":"FYPO:0000595"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"increased subtelomere-derived RNA level","termid":"FYPO:0004574"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"increased telomeric transcript level","termid":"FYPO:0004573"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0002059","FYPO:0000003"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal histone H3-K9 dimethylation at transposable element during vegetative growth","termid":"FYPO:0006989"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal transposition","termid":"FYPO:0000596"},{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_03689:allele-1"}


id: SJAG_03720:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"tel1","product":"ATM checkpoint kinase","uniquename":"SJAG_03720"},"genes_by_uniquename":{},"genotypes":[{"display_name":"tel1delta","display_uniquename":"tel1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03720:allele-1","expression":"Null"}]}]}],"name":"tel1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased invasive hyphal growth","termid":"FYPO:0007774"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000139","FYPO:0000257","FYPO:0002060","FYPO:0002057","FYPO:0002058","FYPO:0000003"],"is_obsolete":false,"name":"normal growth on camptothecin","termid":"FYPO:0001690"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000257","FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"normal viability following cellular response to hydroxyurea","termid":"FYPO:0004693"}],"references_by_uniquename":{},"uniquename":"SJAG_03720:allele-1"}


id: SJAG_03753:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mkh1","product":"MEK kinase (MEKK) Mkh1","uniquename":"SJAG_03753"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mkh1delta","display_uniquename":"mkh1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03753:allele-1","expression":"Null"}]}]}],"name":"mkh1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_03753:allele-1"}


id: SJAG_03783:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps24","product":"ESCRT III complex subunit Vps24","uniquename":"SJAG_03783"},"genes_by_uniquename":{},"genotypes":[{"display_name":"vps24delta","display_uniquename":"vps24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03783:allele-1","expression":"Null"}]}]}],"name":"vps24delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":18,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein localization","termid":"FYPO:0001370"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"}],"references_by_uniquename":{},"uniquename":"SJAG_03783:allele-1"}


id: SJAG_03891:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"alx1","product":"ESCRT-III regulator Alx1","uniquename":"SJAG_03891"},"genes_by_uniquename":{},"genotypes":[{"display_name":"alx1delta","display_uniquename":"alx1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03891:allele-1","expression":"Null"}]}]}],"name":"alx1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"}],"references_by_uniquename":{},"uniquename":"SJAG_03891:allele-1"}


id: SJAG_03891:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"E308V","gene":{"name":"alx1","product":"ESCRT-III regulator Alx1","uniquename":"SJAG_03891"},"genes_by_uniquename":{},"genotypes":[],"name":"rim20E308V","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_03891:allele-2"}


id: SJAG_03892:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps4","product":"AAA family ATPase Vps4","uniquename":"SJAG_03892"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nur1delta vps4delta","display_uniquename":"nur1delta__vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]},{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}],"name":"vps4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"abnormal protein localization to heterochromatin","termid":"FYPO:0004718"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to heterochromatin during vegetative growth","termid":"FYPO:0001132"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased telomere tethering at nuclear periphery during mitosis","termid":"FYPO:0007770"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002057","FYPO:0002060","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_03892:allele-1"}


id: SJAG_03892:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"E233Q","gene":{"name":"vps4","product":"AAA family ATPase Vps4","uniquename":"SJAG_03892"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Vps4-EQ(E233Q aa)","display_uniquename":"Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"Vps4-EQ","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"}],"references_by_uniquename":{},"uniquename":"SJAG_03892:allele-2"}


id: SJAG_03892:allele-3
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"I307T L327S","gene":{"name":"vps4","product":"AAA family ATPase Vps4","uniquename":"SJAG_03892"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cmp7delta vps4-ts(I307T L327S aa)","display_uniquename":"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]},{"display_name":"vps4-ts(I307T L327S aa)","display_uniquename":"vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"vps4-ts","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"}],"references_by_uniquename":{},"uniquename":"SJAG_03892:allele-3"}


id: SJAG_03916:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"chp1","product":"heterochromatin (HP1) family chromodomain protein Chp1","uniquename":"SJAG_03916"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chp1delta","display_uniquename":"chp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03916:allele-1","expression":"Null"}]}]}],"name":"chp1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0002059","FYPO:0000003"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_03916:allele-1"}


id: SJAG_03920:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"sdh3","product":"succinate dehydrogenase (ubiquinone) cytochrome b subunit","uniquename":"SJAG_03920"},"genes_by_uniquename":{},"genotypes":[{"display_name":"sdh3delta","display_uniquename":"sdh3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03920:allele-1","expression":"Null"}]}]}],"name":"sdh3delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_03920:allele-1"}


id: SJAG_03940:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nem2","product":"serine/threonine protein phosphatase (Nem1-Spo7 complex) regulatory subunit","uniquename":"SJAG_03940"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nem2delta","display_uniquename":"nem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03940:allele-1","expression":"Null"}]}]}],"name":"nem2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002274","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0002494"],"is_obsolete":false,"name":"decreased protein dephosphorylation during vegetative growth","termid":"FYPO:0005957"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0002403","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"uniquename":"SJAG_03940:allele-1"}


id: SJAG_04009:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ste11","product":"DNA-binding transcription factor Ste11","uniquename":"SJAG_04009"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ste11delta","display_uniquename":"ste11delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04009:allele-1","expression":"Null"}]}]}],"name":"ste11delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_04009:allele-1"}


id: SJAG_04061:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"arb2","product":"argonaute binding protein 2","uniquename":"SJAG_04061"},"genes_by_uniquename":{},"genotypes":[{"display_name":"arb2delta","display_uniquename":"arb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04061:allele-1","expression":"Null"}]}]}],"name":"arb2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0002059","FYPO:0000003"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_04061:allele-1"}


id: SJAG_04152:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ndi1","product":"internal mitochondrial NADH dehydrogenase (ubiquinone) Ndi1","uniquename":"SJAG_04152"},"genes_by_uniquename":{},"genotypes":[],"name":"ndi1delta","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_04152:allele-1"}


id: SJAG_04280:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"T582G","gene":{"name":"wee1","product":"M phase inhibitor protein kinase Wee1","uniquename":"SJAG_04280"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"rga6delta wee1-as8(T582G aa)","display_uniquename":"rga6delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"wee1-as8(T582G aa)","display_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"wee1-as8","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0004803","FYPO:0001985","FYPO:0005568"],"is_obsolete":false,"name":"abnormal establishment or maintenance of actin cytoskeleton polarity during vegetative growth","termid":"FYPO:0000198"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"abnormally monopolar protein localization to cell tip","termid":"FYPO:0005503"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished geometry scaling","termid":"FYPO:0007783"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000138","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"increased protein localization to non-growing cell tip","termid":"FYPO:0002870"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0004803","FYPO:0001320","FYPO:0000032","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"mislocalized actomyosin contractile ring","termid":"FYPO:0001369"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0000004","FYPO:0000002","FYPO:0001985","FYPO:0000005"],"is_obsolete":false,"name":"viable small vegetative cell","termid":"FYPO:0000648"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000004","FYPO:0001985","FYPO:0000005"],"is_obsolete":false,"name":"viable thin vegetative cell","termid":"FYPO:0001877"}],"references_by_uniquename":{},"uniquename":"SJAG_04280:allele-1"}


id: SJAG_04280:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"G788E","gene":{"name":"wee1","product":"M phase inhibitor protein kinase Wee1","uniquename":"SJAG_04280"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rga4delta wee1-G788E(aa)","display_uniquename":"rga4delta__wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"wee1-G788E(aa)","display_uniquename":"wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"wee1-G788E","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"mislocalized septum","termid":"FYPO:0004293"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0000004","FYPO:0000002","FYPO:0001985","FYPO:0000005"],"is_obsolete":false,"name":"viable small vegetative cell","termid":"FYPO:0000648"}],"references_by_uniquename":{},"uniquename":"SJAG_04280:allele-2"}


id: SJAG_04280:allele-3
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wee1","product":"M phase inhibitor protein kinase Wee1","uniquename":"SJAG_04280"},"genes_by_uniquename":{},"genotypes":[],"name":"wee1delta","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_04280:allele-3"}


id: SJAG_04284:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nup61","product":"nucleoporin Nup61","uniquename":"SJAG_04284"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nup61delta","display_uniquename":"nup61delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04284:allele-1","expression":"Null"}]}]}],"name":"nup61delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"abnormal cell cycle arrest in mitotic anaphase","termid":"FYPO:0000619"},{"cv_name":"fission_yeast_phenotype","gene_count":11,"genotype_count":16,"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal nuclear envelope organization","termid":"FYPO:0000815"}],"references_by_uniquename":{},"uniquename":"SJAG_04284:allele-1"}


id: SJAG_04287:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"cds1","product":"DNA replication checkpoint kinase Cds1","uniquename":"SJAG_04287"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cds1delta","display_uniquename":"cds1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04287:allele-1","expression":"Null"}]}]}],"name":"cds1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0000003","FYPO:0002683","FYPO:0001985","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"}],"references_by_uniquename":{},"uniquename":"SJAG_04287:allele-1"}


id: SJAG_04312:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pka1","product":"cAMP-dependent protein kinase catalytic subunit Pka1","uniquename":"SJAG_04312"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pka1delta","display_uniquename":"pka1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04312:allele-1","expression":"Null"}]}]}],"name":"pka1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":25,"genotype_count":31,"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"abnormal hyphal growth","termid":"FYPO:0007773"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000005","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"elongated vegetative cell","termid":"FYPO:0001122"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"loss of viability in stationary phase","termid":"FYPO:0000245"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002683","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to caffeine during vegetative growth","termid":"FYPO:0000097"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002683","FYPO:0001985","FYPO:0000139","FYPO:0000003","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to hydrogen peroxide","termid":"FYPO:0000087"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to potassium chloride","termid":"FYPO:0001214"}],"references_by_uniquename":{},"uniquename":"SJAG_04312:allele-1"}


id: SJAG_04332:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"I30T,T572P","gene":{"name":"cdc25","product":"protein tyrosine phosphatase (M phase inducer) Cdc25","uniquename":"SJAG_04332"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cdc25-D9(I30T,T572P aa)","display_uniquename":"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04332:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"cdc25-D9","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000004","FYPO:0000631","FYPO:0005447","FYPO:0001320","FYPO:0000005","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"inviable elongated mononucleate cell with cell cycle arrest at mitotic G2/M phase transition","termid":"FYPO:0007701"}],"references_by_uniquename":{},"uniquename":"SJAG_04332:allele-1"}


id: SJAG_04349:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps28","product":"ESCRT I complex subunit Vps28","uniquename":"SJAG_04349"},"genes_by_uniquename":{},"genotypes":[{"display_name":"vps28delta","display_uniquename":"vps28delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04349:allele-1","expression":"Null"}]}]}],"name":"vps28delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein complex localization","termid":"FYPO:0001440"}],"references_by_uniquename":{},"uniquename":"SJAG_04349:allele-1"}


id: SJAG_04464:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"R152C","gene":{"name":"pim1","product":"RCC1 family Ran GEF","uniquename":"SJAG_04464"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"pim1-R152C","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"abnormal cell cycle arrest in mitotic anaphase","termid":"FYPO:0000619"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000631"],"is_obsolete":false,"name":"abnormal mitotic cell cycle arrest with condensed chromosomes","termid":"FYPO:0003738"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000139","FYPO:0001985","FYPO:0002057","FYPO:0002060","FYPO:0002058","FYPO:0000003","FYPO:0005447"],"is_obsolete":false,"name":"decreased cell population growth at high temperature","secondary_identifiers":["FYPO:0000247"],"termid":"FYPO:0000082"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000004"],"is_obsolete":false,"name":"inviable vegetative cell","termid":"FYPO:0001489"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0002403","FYPO:0000004","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"inviable vegetative cell with fragmented nuclear envelope during mitotic telophase","termid":"FYPO:0003976"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0002057"],"is_obsolete":false,"name":"loss of viability at high temperature","termid":"FYPO:0001387"}],"references_by_uniquename":{},"synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}


id: SJAG_04489:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"did4","product":"ESCRT III complex subunit Did4","uniquename":"SJAG_04489"},"genes_by_uniquename":{},"genotypes":[{"display_name":"did4delta","display_uniquename":"did4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04489:allele-1","expression":"Null"}]}]}],"name":"did4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":18,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein localization","termid":"FYPO:0001370"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"}],"references_by_uniquename":{},"uniquename":"SJAG_04489:allele-1"}


id: SJAG_04522:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rga4","product":"RhoGAP Rga4","uniquename":"SJAG_04522"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rga4delta","display_uniquename":"rga4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]}]},{"display_name":"rga4delta rga6delta","display_uniquename":"rga4delta__rga6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]}]},{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"rga4delta wee1-G788E(aa)","display_uniquename":"rga4delta__wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"rga4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished geometry scaling","termid":"FYPO:0007783"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abolished polar cell growth","termid":"FYPO:0004105"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0004803","FYPO:0001320","FYPO:0000032","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"mislocalized actomyosin contractile ring","termid":"FYPO:0001369"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"mislocalized septum","termid":"FYPO:0004293"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000005","FYPO:0001320","FYPO:0000004","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"viable vegetative cell with increased cell diameter","termid":"FYPO:0006616"}],"references_by_uniquename":{},"uniquename":"SJAG_04522:allele-1"}


id: SJAG_04551:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pmk1","product":"MAP kinase Pmk1","uniquename":"SJAG_04551"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pck1delta pmk1delta","display_uniquename":"pck1delta__pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]},{"display_name":"pmk1delta","display_uniquename":"pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]}],"name":"pmk1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"multiseptate cell","termid":"FYPO:0004295"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0002682","FYPO:0000139","FYPO:0000003","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003","FYPO:0002683","FYPO:0001985","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to caspofungin","termid":"FYPO:0000079"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_04551:allele-1"}


id: SJAG_04551:allele-2
data:
  {"allele_type":"amino_acid_insertion","alleles_by_uniquename":{},"description":"82-NITCIYDLDIIINPYNFNEVYIYEE-105","gene":{"name":"pmk1","product":"MAP kinase Pmk1","uniquename":"SJAG_04551"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Pmk1Sj(ins82-105)(82-NITCIYDLDIIINPYNFNEVYIYEE-105)","display_uniquename":"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"Pmk1Sj(ins82-105)","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001320","FYPO:0002274","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0002494"],"is_obsolete":false,"name":"decreased protein phosphorylation during vegetative growth","termid":"FYPO:0001838"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0002682","FYPO:0000139","FYPO:0000003","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"}],"references_by_uniquename":{},"uniquename":"SJAG_04551:allele-2"}


id: SJAG_04551:allele-3
data:
  {"allele_type":"other","alleles_by_uniquename":{},"description":"Pmk1 from S. pombe","gene":{"name":"pmk1","product":"MAP kinase Pmk1","uniquename":"SJAG_04551"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Pmk1Sp(Pmk1 from S. pombe)","display_uniquename":"Pmk1Sp-Pmk1_from_S._pombe-other-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"Pmk1Sp","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0002682","FYPO:0000139","FYPO:0000003","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"}],"references_by_uniquename":{},"uniquename":"SJAG_04551:allele-3"}


id: SJAG_04551:allele-4
data:
  {"allele_type":"partial_amino_acid_deletion","alleles_by_uniquename":{},"description":"Pmk1 from S. pombe with deleted residues 82-105","gene":{"name":"pmk1","product":"MAP kinase Pmk1","uniquename":"SJAG_04551"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Pmk1Sp(delta82-105)(Pmk1 from S. pombe with deleted residues 82-105 Δaa)","display_uniquename":"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-4","expression":"Not assayed or wild type"}]}]}],"name":"Pmk1Sp(delta82-105)","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0002494","FYPO:0002274","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein phosphorylation","termid":"FYPO:0002678"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0002274","FYPO:0002494","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein phosphorylation during vegetative growth","termid":"FYPO:0002033"},{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0002682","FYPO:0000139","FYPO:0000003","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"}],"references_by_uniquename":{},"uniquename":"SJAG_04551:allele-4"}


id: SJAG_04574:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"clr4","product":"histone lysine H3-K9 methyltransferase (Suv39) Clr4","uniquename":"SJAG_04574"},"genes_by_uniquename":{},"genotypes":[{"display_name":"clr4delta","display_uniquename":"clr4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04574:allele-1","expression":"Null"}]}]},{"display_name":"clr4delta leo1delta","display_uniquename":"clr4delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04574:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]}],"name":"clr4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0002059","FYPO:0000003"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_04574:allele-1"}


id: SJAG_04671:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mrc1","product":"claspin, Mrc1","uniquename":"SJAG_04671"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mrc1delta","display_uniquename":"mrc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04671:allele-1","expression":"Null"}]}]}],"name":"mrc1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0002683","FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0000003","FYPO:0002683","FYPO:0001985","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"}],"references_by_uniquename":{},"uniquename":"SJAG_04671:allele-1"}


id: SJAG_04697:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"gms1","product":"Golgi UDP-galactose transmembrane transporter Gms1","uniquename":"SJAG_04697"},"genes_by_uniquename":{},"genotypes":[{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]}],"name":"gms1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"cell lysis during hyphal growth phase","termid":"FYPO:0008029"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000139","FYPO:0001985","FYPO:0002057","FYPO:0002060","FYPO:0002058","FYPO:0000003","FYPO:0005447"],"is_obsolete":false,"name":"decreased cell population growth at high temperature","secondary_identifiers":["FYPO:0000247"],"termid":"FYPO:0000082"},{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0003290","FYPO:0002946","FYPO:0005447","FYPO:0002274","FYPO:0000002","FYPO:0002494","FYPO:0001320"],"is_obsolete":false,"name":"galactose absent from cell wall glycoprotein glycan","termid":"FYPO:0003727"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0002683","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to hygromycin B","termid":"FYPO:0000106"}],"references_by_uniquename":{},"uniquename":"SJAG_04697:allele-1"}


id: SJAG_04703:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"for3","product":"formin For3","uniquename":"SJAG_04703"},"genes_by_uniquename":{},"genotypes":[{"display_name":"for3delta","display_uniquename":"for3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04703:allele-1","expression":"Null"}]}]}],"name":"for3delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0004803","FYPO:0000002"],"is_obsolete":false,"name":"actin cables absent from cell","termid":"FYPO:0003315"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002058","FYPO:0002060","FYPO:0005447","FYPO:0000139","FYPO:0002057"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"spherical cell","termid":"FYPO:0001956"}],"references_by_uniquename":{},"uniquename":"SJAG_04703:allele-1"}


id: SJAG_04777:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"win1","product":"MAP kinase kinase kinase Win1","uniquename":"SJAG_04777"},"genes_by_uniquename":{},"genotypes":[{"display_name":"win1delta","display_uniquename":"win1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04777:allele-1","expression":"Null"}]}]}],"name":"win1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_04777:allele-1"}


id: SJAG_04843:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"fum1","product":"fumarate hydratase","uniquename":"SJAG_04843"},"genes_by_uniquename":{},"genotypes":[{"display_name":"fum1delta","display_uniquename":"fum1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04843:allele-1","expression":"Null"}]}]}],"name":"fum1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_04843:allele-1"}


id: SJAG_04883:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ptp4","product":"phosphatidate cytidylyltransferase Ptp4/Dgk1","uniquename":"SJAG_04883"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ptp4delta","display_uniquename":"ptp4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04883:allele-1","expression":"Null"}]}]}],"name":"ptp4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal mitosis","termid":"FYPO:0001007"}],"references_by_uniquename":{},"uniquename":"SJAG_04883:allele-1"}


id: SJAG_04912:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps25","product":"ESCRT II complex subunit Vps25","uniquename":"SJAG_04912"},"genes_by_uniquename":{},"genotypes":[{"display_name":"vps25delta","display_uniquename":"vps25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04912:allele-1","expression":"Null"}]}]}],"name":"vps25delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein complex localization","termid":"FYPO:0001440"}],"references_by_uniquename":{},"uniquename":"SJAG_04912:allele-1"}


id: SJAG_05207:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"cmp7","product":"ESCRT III complex subunit, nuclear envelope specific subunit Cmp7","uniquename":"SJAG_05207"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cmp7delta","display_uniquename":"cmp7delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]}]},{"display_name":"cmp7delta vps4-ts(I307T L327S aa)","display_uniquename":"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"cmp7delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0002060","FYPO:0001985","FYPO:0000139","FYPO:0000003","FYPO:0002057","FYPO:0002058","FYPO:0005447"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002683","FYPO:0000003","FYPO:0001985","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to leptomycin B","termid":"FYPO:0000714"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002057","FYPO:0002060","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_05207:allele-1"}


id: SJAG_05242:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wcs2","product":"blue light signalling transcription factor, zf-GATA type Wcs2","uniquename":"SJAG_05242"},"genes_by_uniquename":{},"genotypes":[{"display_name":"wcs2delta","display_uniquename":"wcs2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05242:allele-1","expression":"Null"}]}]}],"name":"wcs2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000298","FYPO:0000002"],"is_obsolete":false,"name":"abnormal blue light response","termid":"FYPO:0008031"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003"],"is_obsolete":false,"name":"decreased sexual agglutination in response to blue light","termid":"FYPO:0008046"}],"references_by_uniquename":{},"uniquename":"SJAG_05242:allele-1"}


# refs

id: GO_REF:0000061
data:
  {"abstract":"We have created a standard template for classes describing molecular function involved in other biological processes. The underlying equivalence axiom template is \"P and 'part_of' some W\", where P is a molecular function and W is a biological processes.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of a molecular function involved in a biological process in the Gene Ontology","uniquename":"GO_REF:0000061"}


id: PMID:26896847
data:
  {"abstract":"Evolution provides the unifying framework with which to understand biology. The coherent investigation of genic and genomic data often requires comparative genomics analyses based on whole-genome alignments, sets of homologous genes and other relevant datasets in order to evaluate and answer evolutionary-related questions. However, the complexity and computational requirements of producing such data are substantial: this has led to only a small number of reference resources that are used for most comparative analyses. The Ensembl comparative genomics resources are one such reference set that facilitates comprehensive and reproducible analysis of chordate genome data. Ensembl computes pairwise and multiple whole-genome alignments from which large-scale synteny, per-base conservation scores and constrained elements are obtained. Gene alignments are used to define Ensembl Protein Families, GeneTrees and homologies for both protein-coding and non-coding RNA genes. These resources are updated frequently and have a consistent informatics infrastructure and data presentation across all supported species. Specialized web-based visualizations are also available including synteny displays, collapsible gene tree plots, a gene family locator and different alignment views. The Ensembl comparative genomics infrastructure is extensively reused for the analysis of non-vertebrate species by other projects including Ensembl Genomes and Gramene and much of the information here is relevant to these projects. The consistency of the annotation across species and the focus on vertebrates makes Ensembl an ideal system to perform and support vertebrate comparative genomic analyses. We use robust software and pipelines to produce reference comparative data and make it freely available. Database URL: http://www.ensembl.org.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Herrero J, Muffato M, Beal K, Fitzgerald S, Gordon L, Pignatelli M, Vilella AJ, Searle SM, Amode R, Brent S, Spooner W, Kulesha E, Yates A, Flicek P","authors_abbrev":"Herrero J et al.","canto_curator_role":"JaponicusDB","citation":"Database (Oxford) 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id: PMID:2197287
data:
  {"abstract":"Changes in the distribution of microtubules and F-actin through the cell division cycle of the fission yeast Schizosaccharomyces japonicus var. versatilis were investigated by fluorescence microscopy. The fluorescence images obtained with S. japonicus were markedly superior to those previously reported for S. pombe and revealed new details of cytoskeletal organization in this important genus. As in S. pombe, F-actin in S. japonicus was present as a concentration of 'dots' at the growing poles of interphase cells and as a filamentous equatorial ring directing the deposition of the cytokinetic septum. The transition between these two states occurred at late anaphase, in contrast to the situation in S. pombe where the appearance of the equatorial actin ring is tightly coupled to the early events of mitosis. During the course of cytokinesis in S. japonicus the actin ring constricted and broadened, suggesting that it is contractile. Microtubule organization in S. japonicus also revealed interesting differences from S. pombe. Whereas in S. pombe cytoplasmic microtubules are reinitiated from a pair of microtubule organizing centres (MTOCs) at the cell equator, in S. japonicus they arise by extensive microtubule growth from the spindle poles. Western blots of cell extracts enriched for tubulin by DEAE-Sephadex chromatography showed that, like S. pombe, S. japonicus contains two alpha-tubulins and a single beta-tubulin. Whilst the alpha 1- and beta-tubulins from the two species comigrated on one-dimensional polyacrylamide gels, the alpha 2 species were electrophoretically distinct. Although fundamental differences clearly exist between the two species, S. japonicus could prove to be a useful tool in basic studies of fission yeast cell biology.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Alfa CE, Hyams JS","authors_abbrev":"Alfa CE et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"J Cell Sci 1990 May;96 ( Pt 1):71-7","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"1990","pubmed_entrez_date":"1990-05-01","pubmed_publication_date":"May 1990","terms_by_termid":{},"title":"Distribution of tubulin and actin through the cell division cycle of the fission yeast Schizosaccharomyces japonicus var. versatilis: a comparison with Schizosaccharomyces pombe.","uniquename":"PMID:2197287"}


id: PMID:37457408
data:
  {"abstract":"The online version contains supplementary material available at 10.1007/s10068-023-01265-6.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Choi J, Park SY, Park MK, Kim YS, Ahn C, Kim YJ, Park CS","authors_abbrev":"Choi J et al.","canto_added_date":"2023-07-18 00:40:02","canto_curator_role":"JaponicusDB","canto_triage_status":"Biotech","citation":"Food Sci Biotechnol 2023 Sep;32(10):1383-1393","cv_annotations":{},"doi":"10.1007/s10068-023-01265-6","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2023","pubmed_entrez_date":"2023-07-17","pubmed_publication_date":"Sep 2023","terms_by_termid":{},"title":"Application of  Schizosaccharomyces japonicus  in  makgeolli  fermentation and its brewing characteristics.","uniquename":"PMID:37457408"}


id: PMID:34656184
data:
  {"abstract":"In most fungi, quinone-dependent Class-II dihydroorotate dehydrogenases (DHODs) are essential for pyrimidine biosynthesis. Coupling of these Class-II DHODHs to mitochondrial respiration makes their in vivo activity dependent on oxygen availability. Saccharomyces cerevisiae and closely related yeast species harbor a cytosolic Class-I DHOD (Ura1) that uses fumarate as electron acceptor and thereby enables anaerobic pyrimidine synthesis. Here, we investigate DHODs from three fungi (the Neocallimastigomycete Anaeromyces robustus and the yeasts Schizosaccharomyces japonicus and Dekkera bruxellensis) that can grow anaerobically but, based on genome analysis, only harbor a Class-II DHOD.\nHeterologous expression of putative Class-II DHOD-encoding genes from fungi capable of anaerobic, pyrimidine-prototrophic growth (Arura9, SjURA9, DbURA9) in an S. cerevisiae ura1Δ strain supported aerobic as well as anaerobic pyrimidine prototrophy. A strain expressing DbURA9 showed delayed anaerobic growth without pyrimidine supplementation. Adapted faster growing DbURA9-expressing strains showed mutations in FUM1, which encodes fumarase. GFP-tagged SjUra9 and DbUra9 were localized to S. cerevisiae mitochondria, while ArUra9, whose sequence lacked a mitochondrial targeting sequence, was localized to the yeast cytosol. Experiments with cell extracts showed that ArUra9 used free FAD and FMN as electron acceptors. Expression of SjURA9 in S. cerevisiae reproducibly led to loss of respiratory competence and mitochondrial DNA. A cysteine residue (C265 in SjUra9) in the active sites of all three anaerobically active Ura9 orthologs was shown to be essential for anaerobic activity of SjUra9 but not of ArUra9.\nActivity of fungal Class-II DHODs was long thought to be dependent on an active respiratory chain, which in most fungi requires the presence of oxygen. By heterologous expression experiments in S. cerevisiae, this study shows that phylogenetically distant fungi independently evolved Class-II dihydroorotate dehydrogenases that enable anaerobic pyrimidine biosynthesis. Further structure-function studies are required to understand the mechanistic basis for the anaerobic activity of Class-II DHODs and an observed loss of respiratory competence in S. cerevisiae strains expressing an anaerobically active DHOD from Sch. japonicus.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Bouwknegt J, Koster CC, Vos AM, Ortiz-Merino RA, Wassink M, Luttik MAH, van den Broek M, Hagedoorn PL, Pronk JT","authors_abbrev":"Bouwknegt J et al.","canto_added_date":"2023-05-04 00:40:04","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"Fungal Biol Biotechnol 2021 Oct 16;8(1):10","cv_annotations":{},"doi":"10.1186/s40694-021-00117-4","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2021","pubmed_entrez_date":"2021-10-17","pubmed_publication_date":"16 Oct 2021","terms_by_termid":{},"title":"Class-II dihydroorotate dehydrogenases from three phylogenetically distant fungi support anaerobic pyrimidine biosynthesis.","uniquename":"PMID:34656184"}


id: PMID:33947067
data:
  {"abstract":"The fission yeast  Schizosaccharomyces japonicus , comprising  S. japonicus  var.  japonicus  and  S. japonicus  var.  versatilis  varieties, has unique characteristics such as striking hyphal growth not seen in other  Schizosaccharomyces  species; however, information on its diversity and evolution, in particular mating and sporulation, remains limited. Here we compared the growth and mating phenotypes of 17 wild strains of  S. japonicus , including eight  S. japonicus  var.  japonicus  strains newly isolated from an insect ( Drosophila ). Unlike existing wild strains isolated from fruits/plants, the strains isolated from  Drosophila  sporulated at high frequency even under nitrogen-abundant conditions. In addition, one of the strains from  Drosophila  was stained by iodine vapor, although the type strain of  S. japonicus  var.  japonicus  is not stained. Sequence analysis further showed that the nucleotide and amino acid sequences of pheromone-related genes have diversified among the eight strains from  Drosophila , suggesting crossing between  S. japonicus  cells of different genetic backgrounds occurs frequently in this insect. Much of yeast ecology remains unclear, but our findings suggest that insects such as  Drosophila  might be a good niche for mating and sporulation, and will provide a basis for the understanding of sporulation mechanisms via signal transduction, as well as the ecology and evolution of yeast.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Seike T, Sakata N, Matsuda F, Furusawa C","authors_abbrev":"Seike T et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"J Fungi (Basel) 2021 Apr 29;7(5)","cv_annotations":{},"doi":"10.3390/jof7050350","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2021","pubmed_entrez_date":"2021-05-05","pubmed_publication_date":"29 Apr 2021","terms_by_termid":{},"title":"Elevated Sporulation Efficiency in Fission Yeast  Schizosaccharomyces japonicus  Strains Isolated from  Drosophila .","uniquename":"PMID:33947067"}


id: PMID:22586155
data:
  {"abstract":"tRNA genes are interspersed throughout eukaryotic DNA, contributing to genome architecture and evolution in addition to translation of the transcriptome. Codon use correlates with tRNA gene copy number in noncomplex organisms including yeasts. Synonymous codons impact translation with various outcomes, dependent on relative tRNA abundances. Availability of whole-genome sequences allowed us to examine tRNA gene copy number variation (tgCNV) and codon use in four Schizosaccharomyces species and Saccharomyces cerevisiae. tRNA gene numbers vary from 171 to 322 in the four Schizosaccharomyces despite very high similarity in other features of their genomes. In addition, we performed whole-genome sequencing of several related laboratory strains of Schizosaccharomyces pombe and found tgCNV at a cluster of tRNA genes. We examined for the first time effects of wobble rules on correlation of tRNA gene number and codon use and showed improvement for S. cerevisiae and three of the Schizosaccharomyces species. In contrast, correlation in Schizosaccharomyces japonicus is poor due to markedly divergent tRNA gene content, and much worsened by the wobble rules. In japonicus, some tRNA iso-acceptor genes are absent and others are greatly reduced relative to the other yeasts, while genes for synonymous wobble iso-acceptors are amplified, indicating wobble use not apparent in any other eukaryote. We identified a subset of japonicus-specific wobbles that improves correlation of codon use and tRNA gene content in japonicus. We conclude that tgCNV is high among Schizo species and occurs in related laboratory strains of S. pombe (and expectedly other species), and tRNAome-codon analyses can provide insight into species-specific wobble decoding.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Iben JR, Maraia RJ","authors_abbrev":"Iben JR et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Sequence feature or region","citation":"RNA 2012 Jul;18(7):1358-72","cv_annotations":{},"doi":"10.1261/rna.032151.111","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2012","pubmed_entrez_date":"2012-05-16","pubmed_publication_date":"Jul 2012","terms_by_termid":{},"title":"tRNAomics: tRNA gene copy number variation and codon use provide bioinformatic evidence of a new anticodon:codon wobble pair in a eukaryote.","uniquename":"PMID:22586155"}


id: PMID:12527786
data:
  {"abstract":"The fission yeasts are members of the fungal order Schizosaccharomycetales, a candidate deep-diverging group within Ascomycota. Although a great deal of molecular information is available from Schizosaccharomyces pombe, a model eukaryote, very little is available from other members of this group. In order to better characterize mitochondrial genome evolution in this fungal lineage, the mitochondrial DNA (mtDNA) of two additional fission yeasts, Schizosaccharomyces octosporus and Schizosaccharomyces japonicus var. japonicus, was sequenced. Whereas the mtDNA of S.pombe is only 19 431 bp, the mtDNA of S.octosporus is 44 227 bp, and that of S.japonicus var. japonicus is over 80 kb. The size variation of these mtDNAs is due largely to non-coding regions. The gene content in the latter two mtDNAs is almost identical to that of the completely sequenced S.pombe mtDNA, which encodes 25 tRNA species, the large and small mitochondrial ribosomal RNAs (rnl and rns), the RNA component of mitochondrial RNaseP (rnpB), mitochondrial small subunit ribosomal protein 3 (rps3), cytochrome oxidase subunits 1, 2 and 3 (cox1, cox2 and cox3) and ATP-synthase subunits 6, 8 and 9 (atp6, atp8 and atp9). However, trnI2(cau) (C modified to lysidine) is absent in the S.octosporus mtDNA, as are corresponding ATA codons in its protein-coding genes, and rps3 and rnpB are not found in the mtDNA of S.japonicus var. japonicus. The mtDNA of S.octosporus contains five double hairpin elements, the first report of these elements in an ascomycete. This study provides further evidence in favor of the mobility of these elements, and supports their role in mitochondrial genome rearrangement. The results of our phylogenetic analysis support the monophyly of the Schizosaccharomycetales, but question their grouping within the Archiascomycota.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Bullerwell CE, Leigh J, Forget L, Lang BF","authors_abbrev":"Bullerwell CE et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Sequence feature or region","citation":"Nucleic Acids Res 2003 Jan 15;31(2):759-68","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2003","pubmed_entrez_date":"2003-01-16","pubmed_publication_date":"15 Jan 2003","terms_by_termid":{},"title":"A comparison of three fission yeast mitochondrial genomes.","uniquename":"PMID:12527786"}


id: PMID:9396147
data:
  {"abstract":"Both living and fixed cells of Schizosaccharomyces japonicus var. versatilis showed thread-like mitochondria when studied by phase-contrast and fluorescence microscopy. In the interphase cells, mitochondria extended from pole to pole and converged towards the growing tips. The mitochondrial threads did not disrupt but persisted during mitosis and, subsequently, their bundle was split between the two daughter cells by a concentrically growing septum. Mitochondria in the interphase cells were accompanied by cytoplasmic microtubules. These disappeared during mitosis and, instead, spindle microtubules were formed in the nucleus. The cytoplasmic microtubules reappeared after anaphase B, again in coaligment with mitochondria. Protoplasting as well as the action of microtubule inhibitors methyl-1-(butylcarbamoyl)-2-benzimidazolecarbamate (benomyl) and 2-methylbenzimidazole (MBC) resulted in rapid disintegration of microtubules and, suprisingly, also in disruption of mitochondria into small bodies. Removal of the inhibitors or a short regeneration of protoplasts allowed both the cytoplasmic microtubules and the thread-like mitochondria to reaggregate into the original pattern. Cytochalasin D treatment caused a complete disintegration of actin filaments, while the cytoplasmic microtubules and mitochondria remained intact. These findings of a transient close association of mitochondria and microtubules and their relative independence of the arrangement of actin filaments suggest that microtubules, but not actin cables, form supports for positioning or movement of mitochondria along the cylindrical cells. The persistence of mitochondria in the cell centre during mitosis may be accounted for by the fact that disrupted microtubules fail to provide support for mitochondrial movement towards the cell poles.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Svoboda A, Slaninová I","authors_abbrev":"Svoboda A et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"Can J Microbiol 1997 Oct;43(10):945-53","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"1997","pubmed_entrez_date":"1997-12-13","pubmed_publication_date":"Oct 1997","terms_by_termid":{},"title":"Colocalization of microtubules and mitochondria in the yeast Schizosaccharomyces japonicus var. versatilis.","uniquename":"PMID:9396147"}


id: GO_REF:0000092
data:
  {"abstract":"We have created a standard template for classes describing the biosynthesis of a chemical entity from or via an other chemical entity as biological processes. The underlying equivalence axiom templates are \"GO:0009058 and 'has output' some T and 'has input' some F\" (biosynthesis from) and \"GO:0009058 and 'has output' some T and 'has intermediate' some I\" (biosynthesis via), where T,F, and I are chemical entities (CHEBI:24431). The approach to combine GO and ChEBI has been described in the following publication: PMID:23895341.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation for the biosynthesis from or via a chemical as biological process in the Gene Ontology","uniquename":"GO_REF:0000092"}


id: GO_REF:0000058
data:
  {"abstract":"We have created a standard template for the definition of classes for the regulation of a biological process. This includes the definitions for positive and negative regulation. The equivalence axiom templates are \"GO:0065007 and 'regulates' some X\" (regulation), \"GO:0065007 and 'negatively_regulates' some X\" (negative regulation), and \"GO:0065007 and 'positively_regulates' some X\" (positive regulation), where X is a biological process.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of regulation in the Gene Ontology (biological process) ","uniquename":"GO_REF:0000058"}


id: PMID:28655757
data:
  {"abstract":"Cytokinesis in many eukaryotes involves a tension-generating actomyosin-based contractile ring. Many components of actomyosin rings turn over during contraction, although the significance of this turnover has remained enigmatic. Here, using  Schizosaccharomyces japonicus , we investigate the role of turnover of actin and myosin II in its contraction. Actomyosin ring components self-organize into ∼1-µm-spaced clusters instead of undergoing full-ring contraction in the absence of continuous actin polymerization. This effect is reversed when actin filaments are stabilized. We tested the idea that the function of turnover is to ensure actin filament homeostasis in a synthetic system, in which we abolished turnover by fixing rings in cell ghosts with formaldehyde. We found that these rings contracted fully upon exogenous addition of a vertebrate myosin. We conclude that actin turnover is required to maintain actin filament homeostasis during ring contraction and that the requirement for turnover can be bypassed if homeostasis is achieved artificially.","alleles_by_uniquename":{},"annotation_curators":[{"annotation_count":5,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-07-09","authors":"Chew TG, Huang J, Palani S, Sommese R, Kamnev A, Hatano T, Gu Y, Oliferenko S, Sivaramakrishnan S, Balasubramanian MK","authors_abbrev":"Chew TG et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2021-07-09 13:45:34","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-07-09 13:45:34","canto_session_key":"5ead7a365a97d8ab","canto_session_submitted_date":"2021-07-09 13:45:28","canto_triage_status":"Curatable","citation":"J Cell Biol 2017 09 04;216(9):2657-2667","cv_annotations":{"cellular_component":[{"annotations":[115315,115316,115317,115318,115319],"is_not":false,"summary":null,"term":"GO:0005826"}]},"doi":"10.1083/jcb.201701104","gene_count":5,"genes_by_uniquename":{"SJAG_01665":null,"SJAG_02431":null,"SJAG_03596":null,"SJAG_03703":null,"SJAG_04498":null},"genotypes_by_uniquename":{},"ltp_gene_count":5,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2017","pubmed_entrez_date":"2017-06-29","pubmed_publication_date":"04 09 2017","terms_by_termid":{"GO:0005826":null},"title":"Actin turnover maintains actin filament homeostasis during cytokinetic ring contraction.","uniquename":"PMID:28655757"}


id: PMID:25318672
data:
  {"abstract":"Excess fatty acids and sterols are stored as triacylglycerols and sterol esters in specialized cellular organelles, called lipid droplets. Understanding what determines the cellular amount of neutral lipids and their packaging into lipid droplets is of fundamental and applied interest. Using two species of fission yeast, we show that cycling cells deficient in the function of the ER-resident CDP-DG synthase Cds1 exhibit markedly increased triacylglycerol content and assemble large lipid droplets closely associated with the ER membranes. We demonstrate that these unusual structures recruit the triacylglycerol synthesis machinery and grow by expansion rather than by fusion. Our results suggest that interfering with the CDP-DG route of phosphatidic acid utilization rewires cellular metabolism to adopt a triacylglycerol-rich lifestyle reliant on the Kennedy pathway. ","alleles_by_uniquename":{"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"}},"annotation_curators":[{"annotation_count":8,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-05-17","authors":"He Y, Yam C, Pomraning K, Chin JS, Yew JY, Freitag M, Oliferenko S","authors_abbrev":"He Y et al.","canto_added_date":"2021-05-10 02:38:06","canto_annotation_status":"APPROVED","canto_approved_date":"2021-05-17 12:42:41","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-05-17 12:42:41","canto_session_key":"f89ee2d26032c510","canto_session_submitted_date":"2021-05-17 12:42:28","canto_triage_status":"Curatable","citation":"Mol Biol Cell 2014 Dec 15;25(25):4083-95","cv_annotations":{"biological_process":[{"annotations":[115434],"is_not":false,"summary":null,"term":"GO:0016024"}],"cellular_component":[{"annotations":[115435],"is_not":false,"summary":null,"term":"GO:0005783"}],"molecular_function":[{"annotations":[115433],"is_not":false,"summary":null,"term":"GO:0004605"}],"single_locus_phenotype":[{"annotations":[115437],"is_not":false,"summary":null,"term":"FYPO:0000356"},{"annotations":[115436],"is_not":false,"summary":null,"term":"FYPO:0006433"},{"annotations":[115439],"is_not":false,"summary":null,"term":"FYPO:0004695"},{"annotations":[115438],"is_not":false,"summary":null,"term":"FYPO:0002227"},{"annotations":[115440],"is_not":false,"summary":null,"term":"FYPO:0001357"}]},"doi":"10.1091/mbc.E14-03-0832","gene_count":1,"genes_by_uniquename":{"SJAG_00426":null},"genotypes_by_uniquename":{"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"bbl1-P363S(aa)","display_uniquename":"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00426:allele-1","expression":"Not assayed or wild type"}]}]}},"ltp_gene_count":1,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2014","pubmed_entrez_date":"2014-10-17","pubmed_publication_date":"15 Dec 2014","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000006":null,"FYECO:0000162":null,"FYPO:0000356":null,"FYPO:0001357":null,"FYPO:0002227":null,"FYPO:0004695":null,"FYPO:0006433":null,"FYPO_EXT:0000001":null,"GO:0004605":null,"GO:0005783":null,"GO:0008654":null,"GO:0016024":null},"title":"Increase in cellular triacylglycerol content and emergence of large ER-associated lipid droplets in the absence of CDP-DG synthase function.","uniquename":"PMID:25318672"}


id: PMID:28954740
data:
  {"abstract":"After mitosis, nuclear reorganization occurs together with decondensation of mitotic chromosomes and reformation of the nuclear envelope, thereby restoring the Ran-GTP gradient between the nucleus and cytoplasm. The Ran-GTP gradient is dependent on Pim1/RCC1. Interestingly, a defect in Pim1/RCC1 in  Schizosaccharomyces pombe  causes postmitotic condensation of chromatin, namely hypercondensation, suggesting a relationship between the Ran-GTP gradient and chromosome decondensation. However, how Ran-GTP interacts with chromosome decondensation is unresolved. To examine this interaction, we used  Schizosaccharomyces japonicus , which is known to undergo partial breakdown of the nuclear membrane during mitosis. We found that Pim1/RCC1 was localized on nuclear pores, but this localization failed in a temperature-sensitive mutant of Pim1/RCC1. The mutant cells exhibited hypercondensed chromatin after mitosis due to prolonged association of condensin on the chromosomes. Conceivably, a condensin-dephosphorylation defect might cause hypercondensed chromatin, since chromosomal localization of condensin is dependent on phosphorylation by cyclin-dependent kinase (CDK). Indeed, CDK-phospho-mimic mutation of condensin alone caused untimely condensin localization, resulting in hypercondensed chromatin. Together, these results suggest that dephosphorylation of CDK sites of condensin might require the Ran-GTP gradient produced by nuclear pore-localized Pim1/RCC1.","alleles_by_uniquename":{"SJAG_00871:allele-1":{"allele_type":"amino_acid_mutation","description":"cut3-T19E","gene_uniquename":"SJAG_00871","name":"cut3-T19E","uniquename":"SJAG_00871:allele-1"},"SJAG_04284:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04284","name":"nup61delta","uniquename":"SJAG_04284:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}},"annotation_curators":[{"annotation_count":12,"community_curator":true,"file_name":null,"file_type":null,"name":"Sho Okamoto","orcid":null}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2022-11-23","authors":"Aoki K, Niki H","authors_abbrev":"Aoki K et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2022-11-23 15:00:26","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Sho Okamoto","canto_curator_role":"community","canto_first_approved_date":"2022-11-23 15:00:26","canto_session_key":"7c26b8235c98c3eb","canto_session_submitted_date":"2022-11-23 15:00:18","canto_triage_status":"Curatable","citation":"Biol Open 2017 Nov 15;6(11):1614-1628","cv_annotations":{"biological_process":[{"annotations":[115609],"is_not":false,"summary":null,"term":"GO:0101024"},{"annotations":[115614],"is_not":false,"summary":null,"term":"GO:0006998"}],"cellular_component":[{"annotations":[115613],"is_not":false,"summary":null,"term":"GO:0120321"}],"multi_locus_phenotype":[{"annotations":[115616],"is_not":false,"summary":null,"term":"FYPO:0000619"},{"annotations":[115615],"is_not":false,"summary":null,"term":"FYPO:0001489"}],"single_locus_phenotype":[{"annotations":[115617],"is_not":false,"summary":null,"term":"FYPO:0000619"},{"annotations":[115611],"is_not":false,"summary":null,"term":"FYPO:0003738"},{"annotations":[115618],"is_not":false,"summary":null,"term":"FYPO:0000815"},{"annotations":[115610],"is_not":false,"summary":null,"term":"FYPO:0000082"},{"annotations":[115612],"is_not":false,"summary":null,"term":"FYPO:0003976"},{"annotations":[115608],"is_not":false,"summary":null,"term":"FYPO:0001387"}]},"doi":"10.1242/bio.027193","gene_count":4,"genes_by_uniquename":{"SJAG_00471":null,"SJAG_00871":null,"SJAG_04284":null,"SJAG_04464":null},"genotypes_by_uniquename":{"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"nup61delta":{"display_name":"nup61delta","display_uniquename":"nup61delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04284:allele-1","expression":"Null"}]}]},"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}},"ltp_gene_count":4,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[{"evidence":"Affinity Capture-Western","gene_uniquename":"SJAG_04464","interactor_uniquename":"SJAG_00471","reference_uniquename":"PMID:28954740","throughput":"low"}],"publication_year":"2017","pubmed_entrez_date":"2017-09-29","pubmed_publication_date":"15 Nov 2017","references_by_uniquename":{"PMID:28954740":null},"terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0000082":null,"FYPO:0000619":null,"FYPO:0000815":null,"FYPO:0001387":null,"FYPO:0001489":null,"FYPO:0003738":null,"FYPO:0003976":null,"FYPO_EXT:0000001":null,"GO:0006998":null,"GO:0101024":null,"GO:0120321":null},"title":"Release of condensin from mitotic chromosomes requires the Ran-GTP gradient in the reorganized nucleus.","uniquename":"PMID:28954740"}


id: GO_REF:0000091
data:
  {"abstract":"We have created a standard template for classes describing the cell migration process for a cell type as a biological process. The underlying equivalence axiom template is \"'cell migration' and 'alters_location_of' some C\", where C is a native cell (CL:0000004).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of cell migration as biological processes in the Gene Ontology","uniquename":"GO_REF:0000091"}


id: PMID:20737410
data:
  {"abstract":"Schizosaccharomyces japonicus is a fission yeast for which new genetic tools have recently been developed. Here, we report novel plasmid vectors with high transformation efficiency and an electroporation method for Sz. japonicus. We isolated 44 replicating segments from 12 166 transformants of Sz. japonicus genomic fragments and found a chromosomal fragment, RS1, as a new replicating sequence that conferred high transformation activity to Sz. japonicus cells. This sequence was cloned into a pUC19 vector with ura4(+) of Sz. pombe (pSJU11) or the kan gene on the kanMX6 module (pSJK11) as selection markers. These plasmids transformed Sz. japonicus cells in the early-log phase by electroporation at a frequency of 123 cfu/µg for pSJK11 and 301 cfu/µg for pSJU11, which were higher than previously reported autonomously replicating sequences. Although a portion of plasmids remained in host cells by integration into the chromosome via RS1 segment, the plasmids could be recovered from transformants. The plasmid copy number was estimated to be 1.88 copies per cell by Southern blot analysis using a Sz. pombe ura4(+) probe. The plasmid containing ade6(+) suppressed the auxotrophic growth of the ade6-domE mutant, indicating that the plasmid would be useful for suppressor screening and complementation assays in Sz. japonicus. Furthermore, pSJU11 transformed Sz. pombe cells with the same frequency as the pREP2 plasmid. This study is a report to demonstrate practical use of episomal plasmid vectors for genetic research in Sz. japonicus.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Aoki K, Nakajima R, Furuya K, Niki H","authors_abbrev":"Aoki K et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Method or reagent","citation":"Yeast 2010 Dec;27(12):1049-60","cv_annotations":{},"doi":"10.1002/yea.1815","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2010","pubmed_entrez_date":"2010-08-26","pubmed_publication_date":"Dec 2010","terms_by_termid":{},"title":"Novel episomal vectors and a highly efficient transformation procedure for the fission yeast Schizosaccharomyces japonicus.","uniquename":"PMID:20737410"}


id: GO_REF:0000022
data:
  {"abstract":"GO terms describing processes, functions, and cellular components related to the immune system have existed in the GO from its beginning and been used extensively in the annotation of gene products. However, particularly in the biological process ontology, the initial set of terms relating to immunology failed to cover the breadth of known immunological processes, and in many cases diverged from current usage and understanding in their names, definitions, and ontological placement. As part of a larger effort to improve the representation of immunology in the GO, a GO Content Meeting was held November 15-16, 2005, at The Institute for Genomic Research, to discuss improvements to representation of immunology in the biological process ontology of the GO. As a result of the meeting, a number of high level terms for immunological processes were created, an overall structure for immunologically related terms was established, and certain existing terms were renamed or redefined as well to bring them in line with current usage.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Alison Deckhut Augustine (1), Alan Collmer (2), Judith A. Blake (3, 4), Candace W. Collmer (2, 3), Shane C. Burgess (5), Lindsay Grey Cowell (6), Jennifer I. Clark (3, 7), Bernard de Bono (7), Russell T. Collins (8), Alexander D. Diehl (3, 4), Michelle Gwinn Giglio (3, 9), Jamie A. Lee (10), Linda Hannick (3, 9), Jane Lomax (3, 7), Midori A. Harris (3, 7), Christopher J. Mungall (3, 11), David P. Hill (3, 4), Richard H. Scheuermann (10), Amelia Ireland (3, 7), Alessandro Sette (12) (1. NIAID, 2. Cornell University, 3. The GO Consortium, 4. Mouse Genome Informatics, 5. Mississippi State University, 6. Duke University, 7. EMBL-EBI, 8. University of Cambridge, 9. The Institute for Genomic Research, 10. U.T. Southwestern Medical Center, 11. HHMI, 12. La Jolla Institute for Allergy and Immunology)","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Improving the representation of immunology in the biological process Ontology","uniquename":"GO_REF:0000022"}


id: PMID:27734801
data:
  {"abstract":"Many eukaryotes assemble a ring-shaped actomyosin network that contracts to drive cytokinesis. Unlike actomyosin in sarcomeres, which cycles through contraction and relaxation, the cytokinetic ring disassembles during contraction through an unknown mechanism. Here we find in  Schizosaccharomyces japonicus  and  Schizosaccharomyces pombe  that, during actomyosin ring contraction, actin filaments associated with actomyosin rings are expelled as micron-scale bundles containing multiple actomyosin ring proteins. Using functional isolated actomyosin rings we show that expulsion of actin bundles does not require continuous presence of cytoplasm. Strikingly, mechanical compression of actomyosin rings results in expulsion of bundles predominantly at regions of high curvature. Our work unprecedentedly reveals that the increased curvature of the ring itself promotes its disassembly. It is likely that such a curvature-induced mechanism may operate in disassembly of other contractile networks.","alleles_by_uniquename":{},"annotation_curators":[{"annotation_count":2,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-07-09","authors":"Huang J, Chew TG, Gu Y, Palani S, Kamnev A, Martin DS, Carter NJ, Cross RA, Oliferenko S, Balasubramanian MK","authors_abbrev":"Huang J et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2021-07-09 15:10:46","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-07-09 15:10:46","canto_session_key":"f47401f00ac444e0","canto_session_submitted_date":"2021-07-09 15:10:39","canto_triage_status":"Curatable","citation":"Elife 2016 10 13;5","cv_annotations":{"cellular_component":[{"annotations":[115186],"is_not":false,"summary":null,"term":"GO:0032432"},{"annotations":[115185],"is_not":false,"summary":null,"term":"GO:0005826"}]},"doi":"10.7554/eLife.21383","gene_count":1,"genes_by_uniquename":{"SJAG_04887":null},"genotypes_by_uniquename":{},"ltp_gene_count":1,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2016","pubmed_entrez_date":"2016-10-14","pubmed_publication_date":"13 10 2016","terms_by_termid":{"GO:0005826":null,"GO:0032432":null},"title":"Curvature-induced expulsion of actomyosin bundles during cytokinetic ring contraction.","uniquename":"PMID:27734801"}


id: PMID:28733401
data:
  {"abstract":"Haploid yeast cells mate to form heterozygotes and subsequently undergo meiosis to form spores. This process can be used to produce gene combinations and variants that are useful for genetic analysis. For example, these spores can be used to generate double mutants or to measure genetic distances in a mutational analysis. Here, we describe mating and spore dissection procedures for  Schizosaccharomyces japonicus  cells. Although the overall procedures resemble those used in  Schizosaccharomyces pombe , some differences exist, including the use of EMM2 medium without nitrogen (EMM-N) for mating and the shorter incubation time of 16-20 h for  S. japonicus  cells. Furthermore, the  S. japonicus  zygotes produce eight spores and thus require an \"octad\" analysis.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Furuya K, Niki H","authors_abbrev":"Furuya K et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Method or reagent","citation":"Cold Spring Harb Protoc 2017 Dec 01;2017(12):pdb.prot091843","cv_annotations":{},"doi":"10.1101/pdb.prot091843","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2017","pubmed_entrez_date":"2017-07-23","pubmed_publication_date":"01 Dec 2017","terms_by_termid":{},"title":"Mating, Spore Dissection, and Selection of Diploid Cells in  Schizosaccharomyces japonicus .","uniquename":"PMID:28733401"}


id: GO_REF:0000104
data:
  {"abstract":"GO terms are manually assigned to each rule in UniRule. These rules are prepared manually by UniProt curators based on the annotations present in reviewed UniProtKB/Swiss-Prot records that share sequence features, sequence similarity and taxonomy. The assigned GO terms are then transferred to all unreviewed UniProtKB/TrEMBL proteins that meet the conditions given in the UniRule rule. GO annotations using this technique receive the evidence code Inferred from Electronic Annotation (IEA; ECO:0000501). These annotations are updated regularly by UniProt and are available for download on both the GO and GOA EBI ftp sites. To report an annotation error or inconsistency, or for further information, please contact the UniProt Automated Annotation team at automated_annotation@ebi.ac.uk. UniRule is a collaboration between the European Bioinformatics Institute (EMBL-EBI), the Swiss Institute of Bioinformatics (SIB), and the Protein Information Resource at Georgetown University (PIR). For further information, please see UniProt: a hub for protein information Nucleic Acids Res. 2015, 43, D204, doi: 10.1093/nar/gku989 or www.uniprot.org.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"UniProt curators","canto_curator_role":"JaponicusDB","cv_annotations":{"biological_process":[{"annotations":[64206],"is_not":false,"summary":null,"term":"GO:0030041"},{"annotations":[58955],"is_not":false,"summary":null,"term":"GO:0008643"},{"annotations":[61787],"is_not":false,"summary":null,"term":"GO:0006308"},{"annotations":[58470,65246,67711],"is_not":false,"summary":null,"term":"GO:0006281"},{"annotations":[63978],"is_not":false,"summary":null,"term":"GO:0071788"},{"annotations":[56879,60244,62632,63644,66482,66716,67524],"is_not":false,"summary":null,"term":"GO:0006541"},{"annotations":[65007],"is_not":false,"summary":null,"term":"GO:0006071"},{"annotations":[67171],"is_not":false,"summary":null,"term":"GO:0043647"},{"annotations":[67709],"is_not":false,"summary":null,"term":"GO:0016226"},{"annotations":[60976],"is_not":false,"summary":null,"term":"GO:0051321"},{"annotations":[58801],"is_not":false,"summary":null,"term":"GO:0045292"},{"annotations":[61006,63370,64044],"is_not":false,"summary":null,"term":"GO:0006397"},{"annotations":[58088,63926],"is_not":false,"summary":null,"term":"GO:0051028"},{"annotations":[67984],"is_not":false,"summary":null,"term":"GO:1903599"},{"annotations":[63975],"is_not":false,"summary":null,"term":"GO:1903373"},{"annotations":[65697,67556],"is_not":false,"summary":null,"term":"GO:0045901"},{"annotations":[65698,67557],"is_not":false,"summary":null,"term":"GO:0045905"},{"annotations":[60751,67042],"is_not":false,"summary":null,"term":"GO:0097354"},{"annotations":[59863],"is_not":false,"summary":null,"term":"GO:0006612"},{"annotations":[60867,64321],"is_not":false,"summary":null,"term":"GO:0015031"},{"annotations":[68158],"is_not":false,"summary":null,"term":"GO:0006355"},{"annotations":[68143],"is_not":false,"summary":null,"term":"GO:0042176"},{"annotations":[65167],"is_not":false,"summary":null,"term":"GO:0042254"},{"annotations":[59077],"is_not":false,"summary":null,"term":"GO:0031167"}],"cellular_component":[{"annotations":[64324,66769],"is_not":false,"summary":null,"term":"GO:0005737"},{"annotations":[58954],"is_not":false,"summary":null,"term":"GO:0030659"},{"annotations":[59263,61683,62662,66981],"is_not":false,"summary":null,"term":"GO:0005783"},{"annotations":[58957,59567,60970,62134,67234],"is_not":false,"summary":null,"term":"GO:0005789"},{"annotations":[63976],"is_not":false,"summary":null,"term":"GO:0098826"},{"annotations":[60353],"is_not":false,"summary":null,"term":"GO:0010008"},{"annotations":[62320,68122],"is_not":false,"summary":null,"term":"GO:0009331"},{"annotations":[58161,59201,60639,65179,65857],"is_not":false,"summary":null,"term":"GO:0000139"},{"annotations":[56998,57401,57550,64452],"is_not":false,"summary":null,"term":"GO:0016020"},{"annotations":[57885,62933,67514],"is_not":false,"summary":null,"term":"GO:0005743"},{"annotations":[66158,66618],"is_not":false,"summary":null,"term":"GO:0005759"},{"annotations":[59932],"is_not":false,"summary":null,"term":"GO:0031965"},{"annotations":[57172,59651,60316,61245],"is_not":false,"summary":null,"term":"GO:0005634"},{"annotations":[58681],"is_not":false,"summary":null,"term":"GO:0005681"}],"molecular_function":[{"annotations":[67231],"is_not":false,"summary":null,"term":"GO:0030246"},{"annotations":[60317,60320,63087,64065],"is_not":false,"summary":null,"term":"GO:0003677"},{"annotations":[60347,68141],"is_not":false,"summary":null,"term":"GO:0030234"},{"annotations":[64457],"is_not":false,"summary":null,"term":"GO:0003839"},{"annotations":[60510],"is_not":false,"summary":null,"term":"GO:0005525"},{"annotations":[64057],"is_not":false,"summary":null,"term":"GO:0005096"},{"annotations":[60063,67129],"is_not":false,"summary":null,"term":"GO:0016829"},{"annotations":[56798,57431,59064,59929,60189,60192,60421,60720,61099,61789,61863,62407,62711,62871,63085,63614,63950,64928,66107,66464,67173,67899,68392,68618],"is_not":false,"summary":null,"term":"GO:0046872"},{"annotations":[61256,64942],"is_not":false,"summary":null,"term":"GO:0008509"},{"annotations":[64540],"is_not":false,"summary":null,"term":"GO:0045131"},{"annotations":[57064,57144,58674,59079,59725,61203,66206,66733,66927,67069,67568],"is_not":false,"summary":null,"term":"GO:0003723"},{"annotations":[63371],"is_not":false,"summary":null,"term":"GO:0000339"},{"annotations":[59078],"is_not":false,"summary":null,"term":"GO:0000179"},{"annotations":[57889],"is_not":false,"summary":null,"term":"GO:0008270"}]},"gene_count":111,"genes_by_uniquename":{"SJAG_00054":null,"SJAG_00083":null,"SJAG_00097":null,"SJAG_00159":null,"SJAG_00231":null,"SJAG_00249":null,"SJAG_00261":null,"SJAG_00328":null,"SJAG_00339":null,"SJAG_00396":null,"SJAG_00409":null,"SJAG_00471":null,"SJAG_00473":null,"SJAG_00525":null,"SJAG_00530":null,"SJAG_00537":null,"SJAG_00583":null,"SJAG_00616":null,"SJAG_00634":null,"SJAG_00645":null,"SJAG_00691":null,"SJAG_00811":null,"SJAG_00887":null,"SJAG_00903":null,"SJAG_01004":null,"SJAG_01012":null,"SJAG_01044":null,"SJAG_01075":null,"SJAG_01184":null,"SJAG_01260":null,"SJAG_01355":null,"SJAG_01375":null,"SJAG_01385":null,"SJAG_01409":null,"SJAG_01415":null,"SJAG_01455":null,"SJAG_01542":null,"SJAG_01574":null,"SJAG_01630":null,"SJAG_01672":null,"SJAG_01677":null,"SJAG_01702":null,"SJAG_01720":null,"SJAG_01941":null,"SJAG_01949":null,"SJAG_02019":null,"SJAG_02189":null,"SJAG_02203":null,"SJAG_02245":null,"SJAG_02261":null,"SJAG_02275":null,"SJAG_02287":null,"SJAG_02320":null,"SJAG_02345":null,"SJAG_02408":null,"SJAG_02416":null,"SJAG_02425":null,"SJAG_02463":null,"SJAG_02524":null,"SJAG_02532":null,"SJAG_02557":null,"SJAG_02583":null,"SJAG_02627":null,"SJAG_02655":null,"SJAG_02720":null,"SJAG_02794":null,"SJAG_02812":null,"SJAG_02821":null,"SJAG_02866":null,"SJAG_03038":null,"SJAG_03070":null,"SJAG_03092":null,"SJAG_03158":null,"SJAG_03250":null,"SJAG_03289":null,"SJAG_03328":null,"SJAG_03355":null,"SJAG_03396":null,"SJAG_03479":null,"SJAG_03539":null,"SJAG_03574":null,"SJAG_03588":null,"SJAG_03593":null,"SJAG_03594":null,"SJAG_03609":null,"SJAG_03638":null,"SJAG_03650":null,"SJAG_03775":null,"SJAG_03810":null,"SJAG_03812":null,"SJAG_03866":null,"SJAG_03877":null,"SJAG_03997":null,"SJAG_04021":null,"SJAG_04088":null,"SJAG_04096":null,"SJAG_04111":null,"SJAG_04183":null,"SJAG_04208":null,"SJAG_04217":null,"SJAG_04233":null,"SJAG_04350":null,"SJAG_04368":null,"SJAG_04474":null,"SJAG_04502":null,"SJAG_04615":null,"SJAG_04757":null,"SJAG_04837":null,"SJAG_04880":null,"SJAG_05024":null,"SJAG_05323":null},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{"GO:0000139":null,"GO:0000179":null,"GO:0000339":null,"GO:0003677":null,"GO:0003723":null,"GO:0003839":null,"GO:0005096":null,"GO:0005525":null,"GO:0005634":null,"GO:0005681":null,"GO:0005737":null,"GO:0005743":null,"GO:0005759":null,"GO:0005783":null,"GO:0005789":null,"GO:0006071":null,"GO:0006281":null,"GO:0006308":null,"GO:0006355":null,"GO:0006397":null,"GO:0006541":null,"GO:0006612":null,"GO:0008270":null,"GO:0008509":null,"GO:0008643":null,"GO:0009331":null,"GO:0010008":null,"GO:0015031":null,"GO:0016020":null,"GO:0016226":null,"GO:0016829":null,"GO:0030041":null,"GO:0030234":null,"GO:0030246":null,"GO:0030659":null,"GO:0031167":null,"GO:0031965":null,"GO:0042176":null,"GO:0042254":null,"GO:0043647":null,"GO:0045131":null,"GO:0045292":null,"GO:0045901":null,"GO:0045905":null,"GO:0046872":null,"GO:0051028":null,"GO:0051321":null,"GO:0071788":null,"GO:0097354":null,"GO:0098826":null,"GO:1903373":null,"GO:1903599":null},"title":"Electronic Gene Ontology annotations created by transferring manual GO annotations between related proteins based on shared sequence features.","uniquename":"GO_REF:0000104"}


id: GO_REF:0000021
data:
  {"abstract":"Current genetic and molecular studies in many model organisms are aimed at understanding formation and development of the nervous system. Up until this point, the GO has had a very shallow representation of processes pertaining to the nervous system. In June 2006, curators from MGI and ZFIN met with researchers studying central nervous system development to improve the representation of these processes in GO. In particular, emphasis was placed on three areas that are being addressed actively in current research: forebrain development, hindbrain development and neural tube development. This collaboration resulted in the addition of over 500 terms that reflect the development of the forebrain, the hindbrain, and the neural tube from the perspective of biological process and anatomical structure.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Judith Blake (1, 2), William Bug (3), Rex Chisholm (1, 4), Jennifer Clark (1, 5), Erika Feltrin (6), Jacqueline Finger (2), David Hill (1, 2), Midori Harris (1, 5), Terry Hayamizu (2), Doug Howe (9), Maryanne Martone (7), Kathleen Millen (8), Francis Sele (4) (1. The Gene Ontology Consortium, 2. Mouse Genome Informatics, Bar Harbor, ME, 3. Drexel University, Philadelphia, PA, 4. Northwestern University, Chicago, IL, 5. EMBL-EBI, Hinxton, Cambridgeshire, UK, 6. The University of Padua, Padua, Italy, 7. The University of California at San Diego, San Diego, CA, 8. The University of Chicago, Chicago, IL, 9. The Zebrafish Information Network, University of Oregon, Eugene, OR)","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Improving the representation of central nervous system development in the biological process ontology","uniquename":"GO_REF:0000021"}


id: GO_REF:0000085
data:
  {"abstract":"We have created a standard template for classes describing the apoptotic process for a cell type as a biological process. The underlying equivalence axiom template is \"'apoptotic process' and 'occurs in' some C\", where C is a native cell (CL:0000003).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of cell apoptotic process as biological process in the Gene Ontology","uniquename":"GO_REF:0000085"}


id: GO_REF:0000114
data:
  {"abstract":"Method for transferring manual annotations to an entry based on a curator's judgment of its similarity to a putative homolog that has annotations that are supported with experimental evidence. Annotations are created when a curator judges that the sequence, composition and function of a complex shows high similarity to another complex that has annotation(s) supported by experimental evidence (and therefore display one of the evidence codes ECO:0000353 [IPI] or ECO:0005543). Annotations resulting from the transfer of GO terms display the ECO:0005610, ECO:0005544 or ECO:0005546 evidence codes and include an accession for the complex from which the annotation was projected in the 'with/from' field (column 8). This field MUST contain a Complex Portal accession identifier. Putative homologs are chosen using information combined from a variety of complementary sources. Potential homologs are initially identified using sequence similarity search programs such as BLAST. Homologous relationships are then verified manually using a combination of resources including sequence analysis tools, phylogenetic and comparative genomics databases such as Ensembl Compara, INPARANOID and OrthoMCL, as well as other specialised databases such as species-specific collections (e.g. HGNC's HCOP). In all cases curators check the alignments for each complex component and use their experience to assess whether similarity is considered to be strong enough to infer that the two proteins have a common function so that they can confidently project an annotation. While there is no fixed cut-off point in percentage sequence similarity, generally proteins which have greater than 70% identity that covers greater than 90% of the length of both proteins are examined further. Whilst we expect subunit composition to be conserved between closely related species, this is not an absolute rule and orthologous complexes may differ if a subunit cannot be traced in one species or is experimentally shown not to be present. When there is evidence of multiple paralogs for a single species, multiple variants of the complex can be inferred.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Birgit Meldal and Sandra Orchard (1). (1) European Bioinformatics Institute (EBI), Hinxton, Cambridgeshire, United Kingdom","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Manual transfer of experimentally-verified manual GO annotation data to homologous complexes by curator judgment of sequence, composition and function similarity","uniquename":"GO_REF:0000114"}


id: PMID:23090706
data:
  {"abstract":"DNA damage response includes DNA repair, nucleotide metabolism and even a control of cell fates including differentiation, cell death pathway or some combination of these. The responses to DNA damage differ from species to species. Here we aim to delineate the checkpoint pathway in the dimorphic fission yeast Schizosaccharomyces japonicus, where DNA damage can trigger a differentiation pathway that is a switch from a bidirectional yeast growth mode to an apical hyphal growth mode, and the switching is regulated via a checkpoint kinase, Chk1. This Chk1-dependent switch to hyphal growth is activated with even low doses of agents that damage DNA; therefore, we reasoned that this switch may depend on other genes orthologous to the components of the classical Sz. pombe Chk1-dependent DNA checkpoint pathway. As an initial test of this hypothesis, we assessed the effects of mutations in Sz. japonicus orthologs of Sz. pombe checkpoint genes on this switch from bidirectional to hyphal growth. The same set of DNA checkpoint genes was confirmed in Sz. japonicus. We tested the effect of each DNA checkpoint mutants on hyphal differentiation by DNA damage. We found that the Sz. japonicus hyphal differentiation pathway was dependent on Sz. japonicus orthologs of Sz. pombe checkpoint genes-(SP)rad3, (SP)rad26, (SP)rad9, (SP)rad1, (SP)rad24, (SP)rad25, (SP)crb2, and (SP)chk1-that function in the DNA damage checkpoint pathway, but was not dependent on orthologs of two Sz. pombe genes-(SP)cds1 or (SP)mrc1-that function in the DNA replication checkpoint pathway. These findings indicated that although the role of each component of the DNA damage checkpoint and DNA replication checkpoint is mostly same between the two fission yeasts, the DNA damage checkpoint was the only pathway that governed DNA damage-dependent hyphal growth. We also examined whether DNA damage checkpoint signaling engaged in functional crosstalk with other hyphal differentiation pathways because hyphal differentiation can also be triggered by nutritional stress. Here, we discovered genetic interactions that indicated that the cAMP pathway engaged in crosstalk with Chk1-dependent signaling.","alleles_by_uniquename":{"SJAG_00364:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00364","name":"rad3delta","uniquename":"SJAG_00364:allele-1"},"SJAG_00429:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00429","name":"rad26delta","uniquename":"SJAG_00429:allele-1"},"SJAG_01205:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01205","name":"crb2delta","uniquename":"SJAG_01205:allele-1"},"SJAG_01605:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01605","name":"rad9delta","uniquename":"SJAG_01605:allele-1"},"SJAG_01680:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01680","name":"chk1delta","uniquename":"SJAG_01680:allele-1"},"SJAG_01680:allele-2":{"allele_type":"amino_acid_mutation","description":"P470L","gene_uniquename":"SJAG_01680","name":"chk1-P470L","synonyms":[{"name":"chk1- hyperactive (chk1-hyp)","reference":"PMID:23090706","type":"exact"},{"name":"chk1-hyperactive (chk1-hyp)","reference":"PMID:20368354","type":"exact"}],"uniquename":"SJAG_01680:allele-2"},"SJAG_02266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02266","name":"rad24delta","uniquename":"SJAG_02266:allele-1"},"SJAG_02576:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02576","name":"rad25delta","uniquename":"SJAG_02576:allele-1"},"SJAG_02771:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02771","name":"rad1delta","uniquename":"SJAG_02771:allele-1"},"SJAG_03720:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03720","name":"tel1delta","uniquename":"SJAG_03720:allele-1"},"SJAG_04287:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04287","name":"cds1delta","uniquename":"SJAG_04287:allele-1"},"SJAG_04671:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04671","name":"mrc1delta","uniquename":"SJAG_04671:allele-1"}},"annotation_curators":[{"annotation_count":28,"community_curator":true,"file_name":null,"file_type":null,"name":"Sho Okamoto","orcid":null}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2022-11-21","authors":"Furuya K, Niki H","authors_abbrev":"Furuya K et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2022-11-21 17:21:20","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Sho Okamoto","canto_curator_role":"community","canto_first_approved_date":"2022-11-21 17:21:20","canto_session_key":"5f68f94ee65a99b7","canto_session_submitted_date":"2022-11-21 17:21:13","canto_triage_status":"Curatable","citation":"Curr Genet 2012 Dec;58(5-6):291-303","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115629],"is_not":false,"summary":null,"term":"FYPO:0007790"},{"annotations":[115635],"is_not":false,"summary":null,"term":"FYPO:0000085"},{"annotations":[115632],"is_not":false,"summary":null,"term":"FYPO:0000088"}],"single_locus_phenotype":[{"annotations":[115620,115621,115622,115623,115624,115625,115627,115628],"is_not":false,"summary":null,"term":"FYPO:0007782"},{"annotations":[115646],"is_not":false,"summary":null,"term":"FYPO:0007774"},{"annotations":[115645],"is_not":false,"summary":null,"term":"FYPO:0001690"},{"annotations":[115619,115626],"is_not":false,"summary":null,"term":"FYPO:0007790"},{"annotations":[115644],"is_not":false,"summary":null,"term":"FYPO:0004693"},{"annotations":[115633,115634,115639,115640,115641],"is_not":false,"summary":null,"term":"FYPO:0000085"},{"annotations":[115630,115631,115636,115637,115638],"is_not":false,"summary":null,"term":"FYPO:0000088"},{"annotations":[115642,115643],"is_not":false,"summary":null,"term":"FYPO:0001234"}]},"doi":"10.1007/s00294-012-0384-4","gene_count":11,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_00429":null,"SJAG_01205":null,"SJAG_01605":null,"SJAG_01680":null,"SJAG_02266":null,"SJAG_02576":null,"SJAG_02771":null,"SJAG_03720":null,"SJAG_04287":null,"SJAG_04671":null},"genotypes_by_uniquename":{"cds1delta":{"display_name":"cds1delta","display_uniquename":"cds1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04287:allele-1","expression":"Null"}]}]},"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta":{"display_name":"chk1-P470L(aa) rad24delta","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}]},"chk1delta":{"display_name":"chk1delta","display_uniquename":"chk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-1","expression":"Null"}]}]},"chk1delta__crb2delta":{"display_name":"chk1delta crb2delta","display_uniquename":"chk1delta__crb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01205:allele-1","expression":"Null"}]}]},"crb2delta":{"display_name":"crb2delta","display_uniquename":"crb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01205:allele-1","expression":"Null"}]}]},"mrc1delta":{"display_name":"mrc1delta","display_uniquename":"mrc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04671:allele-1","expression":"Null"}]}]},"rad1delta":{"display_name":"rad1delta","display_uniquename":"rad1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02771:allele-1","expression":"Null"}]}]},"rad24delta":{"display_name":"rad24delta","display_uniquename":"rad24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}]},"rad25delta":{"display_name":"rad25delta","display_uniquename":"rad25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02576:allele-1","expression":"Null"}]}]},"rad26delta":{"display_name":"rad26delta","display_uniquename":"rad26delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00429:allele-1","expression":"Null"}]}]},"rad3delta":{"display_name":"rad3delta","display_uniquename":"rad3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00364:allele-1","expression":"Null"}]}]},"rad9delta":{"display_name":"rad9delta","display_uniquename":"rad9delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01605:allele-1","expression":"Null"}]}]},"tel1delta":{"display_name":"tel1delta","display_uniquename":"tel1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03720:allele-1","expression":"Null"}]}]}},"ltp_gene_count":11,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2012","pubmed_entrez_date":"2012-10-24","pubmed_publication_date":"Dec 2012","references_by_uniquename":{"PMID:20368354":null,"PMID:23090706":null},"terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000314":null,"FYPO:0000085":null,"FYPO:0000088":null,"FYPO:0001234":null,"FYPO:0001690":null,"FYPO:0004693":null,"FYPO:0007774":null,"FYPO:0007782":null,"FYPO:0007790":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"FYPO_EXT:0000003":null},"title":"Hyphal differentiation induced via a DNA damage checkpoint-dependent pathway engaged in crosstalk with nutrient stress signaling in Schizosaccharomyces japonicus.","uniquename":"PMID:23090706"}


id: GO_REF:0000041
data:
  {"abstract":"Transitive assignment of GO terms based on the UniPathway pathway vocabulary. UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways. Descriptions of the pathway(s) that a particular protein is involved in are included in UniProtKB records.<br>UniPathway data are cross-linked to existing pathway resources such as KEGG and MetaCyc. Further information on the UniPathway resource is available at http://www.unipathway.org/obiwarehouse/unipathway.<br>When a UniPathway pathway describes a concept that is within the scope of the Gene Ontology, it is investigated to determine whether it is appropriate to map the term to an equivalent term in GO. The mapping between UniPathway terms and GO terms is carried out manually. Definitions and hierarchies of the terms in the two resources are compared and the mapping generated will reflect the most correct correspondence. The translation table between GO terms and UniPathway pathways is maintained by the UniPathway team and is available at http://www.grenoble.prabi.fr/dev/obiwarehouse/download/unipathway/public/unipathway2go.tsv.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"UniProt-GOA","canto_curator_role":"JaponicusDB","cv_annotations":{"biological_process":[{"annotations":[65154],"is_not":false,"summary":null,"term":"GO:0006021"},{"annotations":[66620],"is_not":false,"summary":null,"term":"GO:0006782"},{"annotations":[57736],"is_not":false,"summary":null,"term":"GO:0006048"}]},"gene_count":3,"genes_by_uniquename":{"SJAG_00097":null,"SJAG_00519":null,"SJAG_03739":null},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{"GO:0006021":null,"GO:0006048":null,"GO:0006782":null},"title":"Gene Ontology annotation based on UniPathway vocabulary mapping. ","uniquename":"GO_REF:0000041"}


id: PMID:33791858
data:
  {"abstract":"Mitogen-activated protein kinase (MAPK) signalling pathways regulate multiple cellular functions in eukaryotic organisms in response to environmental cues, including the dynamic remodeling of the actin cytoskeleton. The fission yeast S. pombe is an optimal model to investigate the conserved regulatory mechanisms of cytokinesis, which relies in an actomyosin-based contractile ring (CAR) that prompts the physical separation of daughter cells during cellular division. Our group has recently shown that p38 MAPK ortholog Sty1, the core component of the stress-activated pathway (SAPK), negatively modulates CAR assembly and integrity in S. pombe during actin cytoskeletal damage induced with Latrunculin A and in response to environmental stress. This response involves downregulation of protein levels of the formin For3, which assembles actin filaments for cables and the CAR, likely through an ubiquitin-mediated degradation mechanism. Contrariwise, Sty1 function positively reinforces CAR assembly during stress in the close relative dimorphic fission yeast S. japonicus. The opposite effect of SAPK signaling on CAR integrity may represent an evolutionary refined adaptation to cope with the marked differences in cytokinesis onset in both fission yeast species.","alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"}},"annotation_curators":[{"annotation_count":4,"community_curator":true,"file_name":null,"file_type":null,"name":"Elisa Gómez Gil","orcid":null}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-09-14","authors":"Madrid M, Gómez-Gil E, Cansado J","authors_abbrev":"Madrid M et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2021-09-14 21:24:28","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Elisa Gómez Gil","canto_curator_role":"community","canto_first_approved_date":"2021-09-14 21:24:28","canto_session_key":"84ac20b0ff20a3cd","canto_session_submitted_date":"2021-09-14 16:45:32","canto_triage_status":"Curatable","citation":"Curr Genet 2021 Oct;67(5):715-721","cv_annotations":{"PSI-MOD":[{"annotations":[115444],"is_not":false,"summary":null,"term":"MOD:00696"}],"single_locus_phenotype":[{"annotations":[115443],"is_not":false,"summary":null,"term":"FYPO:0002998"},{"annotations":[115441,115442],"is_not":false,"summary":null,"term":"FYPO:0000107"}]},"doi":"10.1007/s00294-021-01155-6","gene_count":2,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_02592":null},"genotypes_by_uniquename":{"atf1delta":{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"ltp_gene_count":2,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2021","pubmed_entrez_date":"2021-04-01","pubmed_publication_date":"Oct 2021","terms_by_termid":{"FYECO:0000248":null,"FYPO:0000107":null,"FYPO:0002998":null,"FYPO_EXT:0000001":null,"GO:0120306":null,"MOD:00696":null},"title":"Negative control of cytokinesis by stress-activated MAPK signaling.","uniquename":"PMID:33791858"}


id: PMID:24699070
data:
  {"abstract":"The post-cytokinetic separation of cells in cell-walled organisms involves enzymic processes that degrade a specific layer of the division septum and the region of the mother cell wall that edges the septum. In the fission yeast Schizosaccharomyces pombe, the 1,3-α-glucanase Agn1p, originally identified as a mutanase-like glycoside hydrolase family 71 (GH71) enzyme, dissolves the mother cell wall around the septum edge. Our search in the genomes of completely sequenced fungi identified GH71 hydrolases in Basidiomycota, Taphrinomycotina and Pezizomycotina, but not in Saccharomycotina. The most likely Agn1p orthologues in Pezizomycotina species are not mutanases having mutanase-binding domains, but experimentally non-characterized hypothetical proteins that have no carbohydrate-binding domains. The analysis of the GH71 domains corroborated the phylogenetic relationships of the Schizosaccharomyces species determined by previous studies, but suggested a closer relationship to the Basidiomycota proteins than to the Ascomycota proteins. In the Schizosaccharomyces genus, the Agn1p proteins are structurally conserved: their GH71 domains are flanked by N-terminal secretion signals and C-terminal sequences containing the conserved block YNFNA(Y)/HTG. The inactivation of the agn1(Sj) gene in Schizosaccharomyces japonicus, the only true dimorphic member of the genus, caused a severe cell-separation defect in its yeast phase, but had no effect on the hyphal growth and yeast-to-mycelium transition. It did not affect the mycelium-to-yeast transition either, only delaying the separation of the yeast cells arising from the fragmenting hyphae. The heterologous expression of agn1(Sj) partially rescued the separation defect of the agn1Δ cells of Schizosaccharomyces pombe. The results presented indicate that the fission yeast Agn1p 1,3-α-glucanases of Schizosaccharomyces japonicus and Schizosaccharomyces pombe share conserved functions in the yeast phase. ","alleles_by_uniquename":{"SJAG_03444:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03444","name":"agn1delta","uniquename":"SJAG_03444:allele-1"}},"annotation_curators":[{"annotation_count":1,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"},{"annotation_count":1,"community_curator":false,"file_name":null,"file_type":null,"name":"Val Wood","orcid":"0000-0001-6330-7526"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-07-09","authors":"Sipiczki M, Balazs A, Monus A, Papp L, Horvath A, Sveiczer A, Miklos I","authors_abbrev":"Sipiczki M et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2021-09-01 07:35:20","canto_approver_orcid":"0000-0001-6330-7526","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-07-09 13:16:43","canto_session_key":"b8bc1733e6f2c600","canto_session_submitted_date":"2021-07-09 13:16:35","canto_triage_status":"Curatable","citation":"Microbiology (Reading) 2014 Jun;160(Pt 6):1063-1074","cv_annotations":{"biological_process":[{"annotations":[115184],"is_not":false,"summary":null,"term":"GO:0030995"}],"single_locus_phenotype":[{"annotations":[115183],"is_not":false,"summary":null,"term":"FYPO:0001971"}]},"doi":"10.1099/mic.0.077511-0","gene_count":1,"genes_by_uniquename":{"SJAG_03444":null},"genotypes_by_uniquename":{"agn1delta":{"display_name":"agn1delta","display_uniquename":"agn1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03444:allele-1","expression":"Null"}]}]}},"ltp_gene_count":1,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2014","pubmed_entrez_date":"2014-04-05","pubmed_publication_date":"Jun 2014","terms_by_termid":{"FYPO:0001971":null,"GO:0030995":null},"title":"Phylogenetic and comparative functional analysis of the cell-separation α-glucanase Agn1p in Schizosaccharomyces.","uniquename":"PMID:24699070"}


id: PMID:10379403
data:
  {"abstract":"The order Schizosaccharomycetales contains a dimorphic and two yeast species. Sch. japonicus can form both yeast cells and mycelium, depending on the substrate and the culturing conditions. Sch. pombe is a strictly unicellular organism, but it can be forced to form mycelial cell chains by inactivating members of the sep gene family. The mutations in most of the sep genes confer pleitropic phenotypes indicating functional involvement in MAP-kinase-mediated signalling pathways. Two of them were found to encode transcription factor homologues of other eukaryotes.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Sipiczki M, Grallert A, Miklós I, Zilahi E, Bozsik A, Szilágyi Z","authors_abbrev":"Sipiczki M et al.","canto_added_date":"2023-05-04 00:40:04","canto_annotation_status":"SESSION_CREATED","canto_curator_role":"JaponicusDB","canto_session_key":"eb5db4e2ead0caf4","canto_triage_status":"Cell composition or WT feature","citation":"Acta Microbiol Immunol Hung 1999;46(2-3):297-302","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"1999","pubmed_entrez_date":"1999-06-24","pubmed_publication_date":"1999","terms_by_termid":{},"title":"Genetics, physiology and cytology of yeast-mycelial dimorphism in fission yeasts.","uniquename":"PMID:10379403"}


id: PMID:9884240
data:
  {"abstract":"Fission yeast cells grow by extension at the ends (poles) and divide by transverse fission. It has previously been reported that Schizosaccharomyces japonicus var. japonicus can switch to unipolar, filamentous growth. Here it is shown that the yeast-to-mycelium transition is a gradual process involving a changeover to unipolar growth associated with asymmetric divisions, the development of large polarly located vacuoles, the modifications of the actin and microtubular cytoskeleton and the repression of cell separation after division. High concentrations of glucose in the medium or supplementation of the medium with caffeine or cAMP support the bipolar yeast phase, inhibit the transition to the mycelial phase and induce the conversion of hyphae to yeasts. These effects suggest that cAMP may be involved in the regulation of dimorphism. Temperatures below 18 degrees C or over 35 degrees C are restrictive for the mycelial phase and provoke a return to yeast phase.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-10-07","authors":"Sipiczki M, Takeo K, Grallert A","authors_abbrev":"Sipiczki M et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2021-10-07 12:31:51","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-10-07 12:31:51","canto_session_key":"5ac54d09f220d215","canto_session_submitted_date":"2021-09-30 09:01:47","canto_triage_status":"Curatable","citation":"Microbiology (Reading) 1998 Dec;144 ( Pt 12):3475-3485","cv_annotations":{},"doi":"10.1099/00221287-144-12-3475","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"1998","pubmed_entrez_date":"1999-01-12","pubmed_publication_date":"Dec 1998","terms_by_termid":{},"title":"Growth polarity transitions in a dimorphic fission yeast.","uniquename":"PMID:9884240"}


id: PMID:37233261
data:
  {"abstract":"Gene targeting is a commonly used method to reveal the function of genes. Although it is an attractive tool for molecular studies, it can frequently be a challenge because its efficiency can be low and it requires the screening of a large number of transformants. Generally, these problems originate from the elevated level of ectopic integration caused by non-homologous DNA end joining (NHEJ). To eliminate this problem, NHEJ-related genes are frequently deleted or disrupted. Although these manipulations can improve gene targeting, the phenotype of the mutant strains raised the question of whether mutations have side effects. The aim of this study was to disrupt the  lig4  gene in the dimorphic fission yeast,  S. japonicus , and investigate the phenotypic changes of the mutant strain. The mutant cells have shown various phenotypic changes, such as increased sporulation on complete medium, decreased hyphal growth, faster chronological aging, and higher sensitivity to heat shock, UV light, and caffeine. In addition, higher flocculation capacity has been observed, especially at lower sugar concentrations. These changes were supported by transcriptional profiling. Many genes belonging to metabolic and transport processes, cell division, or signaling had altered mRNA levels compared to the control strain. Although the disruption improved the gene targeting, we assume that the  lig4  inactivation can cause unexpected physiological side effects, and we have to be very careful with the manipulations of the NHEJ-related genes. To reveal the exact mechanisms behind these changes, further investigations are required.","alleles_by_uniquename":{"SJAG_02527:allele-1":{"allele_type":"disruption","description":"RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage","gene_uniquename":"SJAG_02527","name":"lig4::KanMX6","uniquename":"SJAG_02527:allele-1"}},"annotation_curators":[{"annotation_count":7,"community_curator":true,"file_name":null,"file_type":null,"name":"Ida Miklos","orcid":"0000-0002-7074-4019"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2023-08-08","authors":"Acs-Szabo L, Papp LA, Takacs S, Miklos I","authors_abbrev":"Acs-Szabo L et al.","canto_added_date":"2023-05-27 00:40:04","canto_annotation_status":"APPROVED","canto_approved_date":"2023-08-08 20:07:33","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Ida Miklos","canto_curator_role":"community","canto_first_approved_date":"2023-08-08 20:07:33","canto_session_key":"c74bdd0a67b132f8","canto_session_submitted_date":"2023-08-08 20:07:15","canto_triage_status":"Curatable","citation":"J Fungi (Basel) 2023 May 10;9(5)","cv_annotations":{"single_locus_phenotype":[{"annotations":[115489],"is_not":false,"summary":null,"term":"FYPO:0007776"},{"annotations":[115491],"is_not":false,"summary":null,"term":"FYPO:0009111"},{"annotations":[115488],"is_not":false,"summary":null,"term":"FYPO:0000588"},{"annotations":[115494],"is_not":false,"summary":null,"term":"FYPO:0005705"},{"annotations":[115492],"is_not":false,"summary":null,"term":"FYPO:0005231"},{"annotations":[115490],"is_not":false,"summary":null,"term":"FYPO:0000097"},{"annotations":[115493],"is_not":false,"summary":null,"term":"FYPO:0001408"}]},"doi":"10.3390/jof9050550","gene_count":1,"genes_by_uniquename":{"SJAG_02527":null},"genotypes_by_uniquename":{"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown":{"display_name":"lig4::KanMX6(RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage)[Knockdown]","display_uniquename":"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02527:allele-1","expression":"Knockdown"}]}]}},"ltp_gene_count":1,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2023","pubmed_entrez_date":"2023-05-26","pubmed_publication_date":"10 May 2023","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000081":null,"FYECO:0000117":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000315":null,"FYPO:0000097":null,"FYPO:0000588":null,"FYPO:0001408":null,"FYPO:0005231":null,"FYPO:0005705":null,"FYPO:0007776":null,"FYPO:0009111":null},"title":"Disruption of the  Schizosaccharomyces japonicus lig4  Disturbs Several Cellular Processes and Leads to a Pleiotropic Phenotype.","uniquename":"PMID:37233261"}


id: PMID:22300943
data:
  {"abstract":"The fission yeasts (Schizosaccharomyces) representing a highly divergent phylogenetic branch of Fungi evolved from filamentous ancestors by gradual transition from mycelial growth to yeast morphology. For the transition, a mechanism had been developed that separates the sister cells after the completion of cytokinesis. Numerous components of the separation mechanism have been characterised in Schizosaccharomycespombe, including the zinc-finger transcription factor Ace2p and the fork-head transcription factor Sep1p. Here we show that both regulators have regions conserved within the genus. The most conserved parts contain the DNA-binding domains whose amino-acid sequences perfectly reflect the phylogenetic positions of the species. The less conserved parts of the proteins contain sequence blocks specific for the whole genus or only for the species propagating predominantly or exclusively as yeasts. Inactivation of either gene in the dimorphic species Schizosaccharomycesjaponicus abolished cell separation in the yeast phase conferring hypha-like morphology but did not change the growth pattern to unipolar and did not cause extensive polar vacuolation characteristic of the true mycelium. Neither mutation affected the mycelial phase, but both mutations hampered the hyphal fragmentation at the mycelium-to-yeast transition. Ace2p(Sj) acts downstream of Sep1p(Sj) and regulates the orthologues of the Ace2p-dependent S.pombe genes agn1(+) (1,3-alpha-glucanase) and eng1(+) (1,3-beta-glucanase) but does not regulate the orthologue of cfh4(+) (chitin synthase regulatory factor). These results and the complementation of the cell separation defects of the ace2(-) and sep1(-) mutations of S.pombe by heterologously expressed ace2(Sj) and sep1(Sj) indicate that the cell separation mechanism is conserved in the Schizosaccharomyces genus.","alleles_by_uniquename":{"SJAG_02252:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02252","name":"ace2delta","uniquename":"SJAG_02252:allele-1"},"SJAG_03143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03143","name":"sep1delta","uniquename":"SJAG_03143:allele-1"}},"annotation_curators":[{"annotation_count":7,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2022-12-09","authors":"Balazs A, Batta G, Miklos I, Acs-Szabo L, Vazquez de Aldana CR, Sipiczki M","authors_abbrev":"Balazs A et al.","canto_added_date":"2022-12-09 17:19:01","canto_annotation_status":"APPROVED","canto_approved_date":"2022-12-09 17:39:12","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2022-12-09 17:39:12","canto_session_key":"f106e12e6366fbad","canto_session_submitted_date":"2022-12-09 17:38:34","canto_triage_status":"Curatable","citation":"Fungal Genet Biol 2012 Mar;49(3):235-49","cv_annotations":{"single_locus_phenotype":[{"annotations":[115262,115263],"is_not":false,"summary":null,"term":"FYPO:0006557"}]},"doi":"10.1016/j.fgb.2012.01.003","gene_count":2,"genes_by_uniquename":{"SJAG_02252":null,"SJAG_03143":null},"genotypes_by_uniquename":{"ace2delta":{"display_name":"ace2delta","display_uniquename":"ace2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02252:allele-1","expression":"Null"}]}]},"sep1delta":{"display_name":"sep1delta","display_uniquename":"sep1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03143:allele-1","expression":"Null"}]}]}},"ltp_gene_count":2,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2012","pubmed_entrez_date":"2012-02-04","pubmed_publication_date":"Mar 2012","terms_by_termid":{"FYECO:0000137":null,"FYPO:0006557":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null},"title":"Conserved regulators of the cell separation process in Schizosaccharomyces.","uniquename":"PMID:22300943"}


id: PMID:33495454
data:
  {"abstract":"The endoplasmic reticulum (ER) network consists of tubules with high membrane curvature in cross-section, generated by the reticulons and REEPs. These proteins have two pairs of trans-membrane (TM) segments, followed by an amphipathic helix (APH), but how they induce curvature is poorly understood. Here, we show that REEPs form homodimers by interaction within the membrane. When overexpressed or reconstituted at high concentrations with phospholipids, REEPs cause extreme curvature through their TMs, generating lipoprotein particles instead of vesicles. The APH facilitates curvature generation, as its mutation prevents ER network formation of reconstituted proteoliposomes, and synthetic L- or D-amino acid peptides abolish ER network formation in Xenopus egg extracts. In Schizosaccharomyces japonicus, the APH is required for reticulon's exclusive ER-tubule localization and restricted mobility. Thus, the TMs and APH cooperate to generate high membrane curvature. We propose that the formation of splayed REEP/reticulon dimers is responsible for ER tubule formation.","alleles_by_uniquename":{"SJAG_01374:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01374","name":"nup132delta","uniquename":"SJAG_01374:allele-1"}},"annotation_curators":[{"annotation_count":8,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-07-09","authors":"Wang N, Clark LD, Gao Y, Kozlov MM, Shemesh T, Rapoport TA","authors_abbrev":"Wang N et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2021-07-09 16:24:24","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-07-09 16:24:24","canto_session_key":"23c6ae79d435aba5","canto_session_submitted_date":"2021-07-09 16:24:16","canto_triage_status":"Curatable","citation":"Nat Commun 2021 01 25;12(1):568","cv_annotations":{"biological_process":[{"annotations":[115479,115485],"is_not":false,"summary":null,"term":"GO:0097753"}],"cellular_component":[{"annotations":[115480,115481],"is_not":false,"summary":null,"term":"GO:0032541"},{"annotations":[115482,115483],"is_not":false,"summary":null,"term":"GO:0005643"}],"single_locus_phenotype":[{"annotations":[115484],"is_not":false,"summary":null,"term":"FYPO:0003973"}]},"doi":"10.1038/s41467-020-20625-y","gene_count":4,"genes_by_uniquename":{"SJAG_01374":null,"SJAG_01834":null,"SJAG_01848":null,"SJAG_03795":null},"genotypes_by_uniquename":{"nup132delta":{"display_name":"nup132delta","display_uniquename":"nup132delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01374:allele-1","expression":"Null"}]}]}},"ltp_gene_count":4,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[{"evidence":"Reconstituted Complex","gene_uniquename":"SJAG_03795","interactor_uniquename":"SJAG_03795","reference_uniquename":"PMID:33495454","throughput":"low"}],"publication_year":"2021","pubmed_entrez_date":"2021-01-26","pubmed_publication_date":"25 01 2021","terms_by_termid":{"FYPO:0003973":null,"GO:0005643":null,"GO:0032541":null,"GO:0097753":null},"title":"Mechanism of membrane-curvature generation by ER-tubule shaping proteins.","uniquename":"PMID:33495454"}


id: GO_REF:0000067
data:
  {"abstract":"We have created a standard template for classes describing the binding to a chemical entity (ChEBI) as a molecular function. The underlying equivalence axiom template is \"GO:0005488 and 'has input' some X\", where X is a chemical entity (CHEBI:24431). The approach to combine GO and ChEBI has been described in the following publication: PMID:23895341.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of binding to a chemical entity as molecular function in the Gene Ontology","uniquename":"GO_REF:0000067"}


id: PMID:28733403
data:
  {"abstract":"This protocol describes the use of electroporation to transform  Schizosaccharomyces japonicus  with plasmids or linear DNA. Plasmids are helpful for the complementation testing of mutations and for the expression of specific genes. Linear DNA fragments integrated into chromosomal DNA by homologous recombination are useful for gene deletion or to fuse a gene with a tag sequence (e.g., encoding a fluorescent protein). To introduce DNA into  S. japonicus , electroporation methods are recommended because  S. japonicus  is sensitive to lithium acetate (LiOAc).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Aoki K, Niki H","authors_abbrev":"Aoki K et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Method or reagent","citation":"Cold Spring Harb Protoc 2017 Dec 01;2017(12):pdb.prot091850","cv_annotations":{},"doi":"10.1101/pdb.prot091850","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2017","pubmed_entrez_date":"2017-07-23","pubmed_publication_date":"01 Dec 2017","terms_by_termid":{},"title":"Transformation of  Schizosaccharomyces japonicus .","uniquename":"PMID:28733403"}


id: PMID:36148799
data:
  {"abstract":"Tropomyosins are structurally conserved α-helical coiled-coil proteins that bind along the length of filamentous actin (F-actin) in fungi and animals. Tropomyosins play essential roles in the stability of actin filaments and in regulating myosin II contractility. Despite the crucial role of tropomyosin in actin cytoskeletal regulation, in vivo investigations of tropomyosin are limited, mainly due to the suboptimal live-cell imaging tools currently available. Here, we report on an mNeonGreen (mNG)-tagged tropomyosin, with native promoter and linker length configuration, that clearly reports tropomyosin dynamics in Schizosaccharomyces pombe (Cdc8), Schizosaccharomyces japonicus (Cdc8) and Saccharomyces cerevisiae (Tpm1 and Tpm2). We also describe a fluorescent probe to visualize mammalian tropomyosin (TPM2 isoform). Finally, we generated a camelid nanobody against S. pombe Cdc8, which mimics the localization of mNG-Cdc8 in vivo. Using these tools, we report the presence of tropomyosin in previously unappreciated patch-like structures in fission and budding yeasts, show flow of tropomyosin (F-actin) cables to the cytokinetic actomyosin ring and identify rearrangements of the actin cytoskeleton during mating. These powerful tools and strategies will aid better analyses of tropomyosin and F-actin cables in vivo.","alleles_by_uniquename":{},"annotation_curators":[{"annotation_count":3,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2022-11-25","authors":"Hatano T, Lim TC, Billault-Chaumartin I, Dhar A, Gu Y, Massam-Wu T, Scott W, Adishesha S, Chapa-Y-Lazo B, Springall L, Sivashanmugam L, Mishima M, Martin SG, Oliferenko S, Palani S, Balasubramanian MK","authors_abbrev":"Hatano T et al.","canto_added_date":"2022-11-25 12:03:53","canto_annotation_status":"APPROVED","canto_approved_date":"2022-11-25 12:11:22","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2022-11-25 12:11:22","canto_session_key":"d572e8fc7f8a7a38","canto_session_submitted_date":"2022-11-25 12:11:07","canto_triage_status":"Curatable","citation":"J Cell Sci 2022 Sep 15;135(18)","cv_annotations":{"cellular_component":[{"annotations":[115180],"is_not":false,"summary":null,"term":"GO:0070648"},{"annotations":[115182],"is_not":false,"summary":null,"term":"GO:1990819"},{"annotations":[115181],"is_not":false,"summary":null,"term":"GO:0110085"}]},"doi":"10.1242/jcs.260288","gene_count":1,"genes_by_uniquename":{"SJAG_04887":null},"genotypes_by_uniquename":{},"ltp_gene_count":1,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2022","pubmed_entrez_date":"2022-09-23","pubmed_publication_date":"15 Sep 2022","terms_by_termid":{"GO:0070648":null,"GO:0110085":null,"GO:1990819":null},"title":"mNG-tagged fusion proteins and nanobodies to visualize tropomyosins in yeast and mammalian cells.","uniquename":"PMID:36148799"}


