# terms

id: PBO:0001047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Tsr1 (predicted)","termid":"PBO:0001047"}


id: FYPO:0004494
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is inviable, branched, septated, and has a larger volume and is longer, than normal. In a swollen cell, both length and diameter may be greater than normal, although the cell is only considered elongated if the length:diameter ratio is also greater than normal.","definition_xrefs":["PomBase:jh","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable elongated vegetative cell","termid":"FYPO:0001490"},{"relation_name":"is_a","term_name":"branched, elongated cell","termid":"FYPO:0001512"},{"relation_name":"is_a","term_name":"inviable swollen elongated vegetative cell","termid":"FYPO:0002251"},{"relation_name":"is_a","term_name":"inviable branched, swollen vegetative cell","termid":"FYPO:0006794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000004","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"inviable branched, swollen, elongated vegetative cell","synonyms":[{"name":"inviable branched, elongated, swollen vegetative cell","type":"exact"},{"name":"inviable branched, swollen, elongated cell during vegetative growth","type":"exact"},{"name":"inviable branched, swollen, elongated vegetative cell during mitotic cell cycle","type":"related"},{"name":"lethal; branched, swollen, elongated vegetative cell","type":"exact"}],"termid":"FYPO:0004494"}


id: GO:0022034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of rhombomere cells, resulting in the expansion of the cell population.","definition_xrefs":["GO_REF:0000021","GOC:dgh","GOC:cls","GOC:jid","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neural precursor cell proliferation","termid":"GO:0061351"},{"relation_name":"part_of","term_name":"rhombomere development","termid":"GO:0021546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rhombomere cell proliferation","termid":"GO:0022034"}


id: GO:1905160
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of Factor XII activation.","definition_xrefs":["PMID:617517","GO_REF:0000058","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of Factor XII activation (obsolete GO:1905160)","synonyms":[{"name":"activation of Factor XII activation","type":"narrow"},{"name":"activation of Hageman factor activation","type":"narrow"},{"name":"positive regulation of Hageman factor activation","type":"exact"},{"name":"up regulation of Factor XII activation","type":"exact"},{"name":"up regulation of Hageman factor activation","type":"exact"},{"name":"up-regulation of Factor XII activation","type":"exact"},{"name":"up-regulation of Hageman factor activation","type":"exact"},{"name":"upregulation of Factor XII activation","type":"exact"},{"name":"upregulation of Hageman factor activation","type":"exact"}],"termid":"GO:1905160"}


id: GO:0140664
data:
  {"annotated_genes":["SJAG_02226","SJAG_01419","SJAG_01410","SJAG_01620","SJAG_01807","SJAG_02187","SJAG_00757","SJAG_02708","SJAG_02748","SJAG_02267"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84788,87902,88817,93061,95197,96672,96704,100685,102176,112537],"is_not":false,"summary":null,"term":"GO:0140664"}]},"cv_name":"molecular_function","definition":"A molecule that recognises toxic DNA structures, and initiates a signaling response, driven by ATP hydrolysis.","definition_xrefs":["PMID:33510387","PMID:33302090"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-dependent activity, acting on DNA","termid":"GO:0008094"},{"relation_name":"is_a","term_name":"DNA damage sensor activity","termid":"GO:0140612"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00757":null,"SJAG_01410":null,"SJAG_01419":null,"SJAG_01620":null,"SJAG_01807":null,"SJAG_02187":null,"SJAG_02226":null,"SJAG_02267":null,"SJAG_02708":null,"SJAG_02748":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140299"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0140299","GO:0003674","GO:0140097","GO:0003824"],"is_obsolete":false,"name":"ATP-dependent DNA damage sensor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ATP-dependent DNA damage sensing activity","type":"exact"}],"termid":"GO:0140664","terms_by_termid":{"GO:0140664":null}}


id: PBO:0108624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly protein Cox1101/ mitochondrial ribosome assembly protein Rsm22 fusion protein","termid":"PBO:0108624"}


id: GO:1903287
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of potassium ion import across the plasma membrane.","definition_xrefs":["PMID:10636900","GOC:mtg_cardiac_conduct_nov11","GO_REF:0000058","GOC:rl","GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of potassium ion transmembrane transport","termid":"GO:1901380"},{"relation_name":"is_a","term_name":"regulation of potassium ion import","termid":"GO:1903286"},{"relation_name":"negatively_regulates","term_name":"potassium ion import across plasma membrane","termid":"GO:1990573"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"negative regulation of potassium ion import across plasma membrane","synonyms":[{"name":"down regulation of potassium import","type":"broad"},{"name":"down regulation of potassium ion import","type":"broad"},{"name":"down regulation of potassium ion uptake","type":"broad"},{"name":"down-regulation of potassium import","type":"broad"},{"name":"down-regulation of potassium ion import","type":"broad"},{"name":"down-regulation of potassium ion uptake","type":"broad"},{"name":"downregulation of potassium import","type":"broad"},{"name":"downregulation of potassium ion import","type":"broad"},{"name":"downregulation of potassium ion uptake","type":"broad"},{"name":"inhibition of potassium import","type":"narrow"},{"name":"inhibition of potassium ion import","type":"narrow"},{"name":"inhibition of potassium ion uptake","type":"narrow"},{"name":"negative regulation of potassium import","type":"broad"},{"name":"negative regulation of potassium ion import","type":"broad"},{"name":"negative regulation of potassium ion uptake","type":"broad"}],"termid":"GO:1903287"}


id: PBO:0065546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostaglandin D2 synthase","termid":"PBO:0065546"}


id: GO:0060828
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin, the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes.","definition_xrefs":["GOC:sdb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of Wnt signaling pathway","termid":"GO:0030111"},{"relation_name":"regulates","term_name":"canonical Wnt signaling pathway","termid":"GO:0060070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of canonical Wnt signaling pathway","secondary_identifiers":["GO:0035411","GO:0035412"],"synonyms":[{"name":"catenin import into nucleus","type":"narrow"},{"name":"regulation of Wnt receptor signaling pathway through beta-catenin","type":"exact"},{"name":"regulation of canonical Wnt receptor signaling pathway","type":"exact"},{"name":"regulation of canonical Wnt receptor signalling pathway","type":"exact"},{"name":"regulation of canonical Wnt-activated signaling pathway","type":"exact"},{"name":"regulation of catenin import into nucleus","type":"narrow"},{"name":"regulation of catenin protein nuclear translocation","type":"narrow"}],"termid":"GO:0060828"}


id: PBO:0057995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3919","termid":"PBO:0057995"}


id: GO:0044273
data:
  {"annotated_genes":["SJAG_01612","SJAG_00903","SJAG_03316","SJAG_04858"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104832,95325,94505,98379],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006751"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"cellular catabolic process","termid":"GO:0044248"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00903":null,"SJAG_01612":null,"SJAG_03316":null,"SJAG_04858":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0006790"],"is_obsolete":false,"name":"sulfur compound catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"sulfur catabolic process","type":"narrow"},{"name":"sulfur catabolism","type":"narrow"},{"name":"sulfur compound breakdown","type":"exact"},{"name":"sulfur compound catabolism","type":"exact"},{"name":"sulfur compound degradation","type":"exact"}],"termid":"GO:0044273","terms_by_termid":{"GO:0006751":null}}


id: PBO:0065971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD52 homolog, DNA repair protein","termid":"PBO:0065971"}


id: GO:0050673
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population. Epithelial cells make up the epithelium, the covering of internal and external surfaces of the body, including the lining of vessels and other small cavities. It consists of cells joined by small amounts of cementing substances.","definition_xrefs":["ISBN:0721662544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population proliferation","termid":"GO:0008283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial cell proliferation","termid":"GO:0050673"}


id: FYPO:0002060
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_00364:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00364","name":"rad3delta","uniquename":"SJAG_00364:allele-1"},"SJAG_00409:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00409","name":"gpd1delta","uniquename":"SJAG_00409:allele-1"},"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"},"SJAG_00429:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00429","name":"rad26delta","uniquename":"SJAG_00429:allele-1"},"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"},"SJAG_00601:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00601","name":"rip1delta","uniquename":"SJAG_00601:allele-1"},"SJAG_01242:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01242","name":"vps32delta","uniquename":"SJAG_01242:allele-1"},"SJAG_01355:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01355","name":"cox6delta","uniquename":"SJAG_01355:allele-1"},"SJAG_01794:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01794","name":"scd2delta","uniquename":"SJAG_01794:allele-1"},"SJAG_01946:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01946","name":"cem1delta","uniquename":"SJAG_01946:allele-1"},"SJAG_02527:allele-1":{"allele_type":"disruption","description":"RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage","gene_uniquename":"SJAG_02527","name":"lig4::KanMX6","uniquename":"SJAG_02527:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_02763:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02763","name":"ned1delta","uniquename":"SJAG_02763:allele-1"},"SJAG_03198:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03198","name":"oar2delta","uniquename":"SJAG_03198:allele-1"},"SJAG_03198:allele-2":{"allele_type":"amino_acid_mutation","description":"Y189D cold sensitive","gene_uniquename":"SJAG_03198","name":"oar2-51","uniquename":"SJAG_03198:allele-2"},"SJAG_03198:allele-3":{"allele_type":"amino_acid_mutation","description":"R72A,L75A,R106A,L109A","gene_uniquename":"SJAG_03198","name":"oar2-dm12","synonyms":[{"name":"destruction box mutations","reference":"PMID:23786411","type":"exact"}],"uniquename":"SJAG_03198:allele-3"},"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03453:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03453","name":"ras1delta","uniquename":"SJAG_03453:allele-1"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"},"SJAG_03720:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03720","name":"tel1delta","uniquename":"SJAG_03720:allele-1"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"},"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"},"SJAG_04703:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04703","name":"for3delta","uniquename":"SJAG_04703:allele-1"},"SJAG_05207:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05207","name":"cmp7delta","uniquename":"SJAG_05207:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115293,115294,115292,115296],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000674"}],"single_locus_phenotype":[{"annotations":[115583,115571],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004481"},{"annotations":[115479,115158],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000082"},{"annotations":[115281,115295,115279,115280,115643],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000080"},{"annotations":[115225,115618,115217,115201,115221],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001355"},{"annotations":[115326],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001690"},{"annotations":[115609,115607,115608,115633],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001357"},{"annotations":[115150],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001408"},{"annotations":[115547,115425,115324,115259,115380,115641,115642,115323,115606,115381],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001234"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which cells in the population are viable in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viable cell population","termid":"FYPO:0002058"}],"gene_count":24,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_00364":null,"SJAG_00409":null,"SJAG_00426":null,"SJAG_00429":null,"SJAG_00514":null,"SJAG_00601":null,"SJAG_01242":null,"SJAG_01355":null,"SJAG_01794":null,"SJAG_01946":null,"SJAG_02527":null,"SJAG_02592":null,"SJAG_02763":null,"SJAG_03198":null,"SJAG_03449":null,"SJAG_03453":null,"SJAG_03575":null,"SJAG_03720":null,"SJAG_03892":null,"SJAG_04464":null,"SJAG_04697":null,"SJAG_04703":null,"SJAG_05207":null},"genotype_count":29,"genotypes_by_uniquename":{"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__cem1delta":{"display_name":"apc2-361(E548K ts) cem1delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]},"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts) oar2-51(Y189D cold sensitive)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Not assayed or wild type"}]}]},"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression":{"display_name":"apc2-361(E548K ts) oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]},"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2delta":{"display_name":"apc2-361(E548K ts) oar2delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]},"atf1delta":{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]},"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"bbl1-P363S(aa)","display_uniquename":"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00426:allele-1","expression":"Not assayed or wild type"}]}]},"cem1delta":{"display_name":"cem1delta","display_uniquename":"cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]},"cmp7delta":{"display_name":"cmp7delta","display_uniquename":"cmp7delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]}]},"cox6delta":{"display_name":"cox6delta","display_uniquename":"cox6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01355:allele-1","expression":"Null"}]}]},"for3delta":{"display_name":"for3delta","display_uniquename":"for3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04703:allele-1","expression":"Null"}]}]},"gms1delta":{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]},"gpd1delta":{"display_name":"gpd1delta","display_uniquename":"gpd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00409:allele-1","expression":"Null"}]}]},"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown":{"display_name":"lig4::KanMX6(RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage)[Knockdown]","display_uniquename":"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02527:allele-1","expression":"Knockdown"}]}]},"man1delta":{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]},"ned1delta":{"display_name":"ned1delta","display_uniquename":"ned1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-1","expression":"Null"}]}]},"oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression":{"display_name":"oar2-51(Y189D cold sensitive)[Overexpression]","display_uniquename":"oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Overexpression"}]}]},"oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression":{"display_name":"oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]},"oar2delta":{"display_name":"oar2delta","display_uniquename":"oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]},"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"rad26delta":{"display_name":"rad26delta","display_uniquename":"rad26delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00429:allele-1","expression":"Null"}]}]},"rad3delta":{"display_name":"rad3delta","display_uniquename":"rad3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00364:allele-1","expression":"Null"}]}]},"ras1delta":{"display_name":"ras1delta","display_uniquename":"ras1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03453:allele-1","expression":"Null"}]}]},"rip1delta":{"display_name":"rip1delta","display_uniquename":"rip1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00601:allele-1","expression":"Null"}]}]},"scd1delta":{"display_name":"scd1delta","display_uniquename":"scd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00514:allele-1","expression":"Null"}]}]},"scd2delta":{"display_name":"scd2delta","display_uniquename":"scd2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01794:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]},"tel1delta":{"display_name":"tel1delta","display_uniquename":"tel1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03720:allele-1","expression":"Null"}]}]},"vps32delta":{"display_name":"vps32delta","display_uniquename":"vps32delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01242:allele-1","expression":"Null"}]}]},"vps4delta":{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0002058","FYPO:0000003"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_01946","SJAG_03575","SJAG_03198"],"name":"viable vegetative cell population","references_by_uniquename":{"PMID:23090706":null,"PMID:23786411":null,"PMID:24184107":null,"PMID:25318672":null,"PMID:26774782":null,"PMID:28954740":null,"PMID:29566183":null,"PMID:30664646":null,"PMID:30726171":null,"PMID:31150379":null,"PMID:32109380":null,"PMID:32243490":null,"PMID:36058798":null,"PMID:37164017":null,"PMID:37233261":null},"single_locus_annotated_genes":["SJAG_00426","SJAG_03720","SJAG_00364","SJAG_01946","SJAG_02527","SJAG_03453","SJAG_05207","SJAG_00514","SJAG_04703","SJAG_02592","SJAG_03198","SJAG_04697","SJAG_00266","SJAG_04464","SJAG_03449","SJAG_01355","SJAG_00429","SJAG_03892","SJAG_00409","SJAG_01242","SJAG_00601","SJAG_01794","SJAG_02763"],"single_locus_genotype_uniquenames":["vps32delta","for3delta","rip1delta","cox6delta","sty1delta","tel1delta","pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","scd2delta","cmp7delta","oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression","oar2delta","gpd1delta","cem1delta","scd1delta","man1delta","bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","ned1delta","gms1delta","rad26delta","vps4delta","rad3delta","ras1delta","atf1delta","oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression"],"synonyms":[{"name":"viable cell population during vegetative growth","type":"exact"},{"name":"viable vegetative cell population during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002060","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000103":null,"FYECO:0000117":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYPO:0000080":null,"FYPO:0000082":null,"FYPO:0000674":null,"FYPO:0001234":null,"FYPO:0001355":null,"FYPO:0001357":null,"FYPO:0001408":null,"FYPO:0001690":null,"FYPO:0004481":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"FYPO_EXT:0000003":null}}


id: PBO:0054303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1695","termid":"PBO:0054303"}


id: PBO:0064250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin","termid":"PBO:0064250"}


id: PBO:0071000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 2","termid":"PBO:0071000"}


id: PBO:0087928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transferrin receptor-like protein; plasma membrane protein that binds Bsd2p and regulates ubiquitination and vacuolar degradation of the metal transporter Smf1p; functionally redundant with Tre2p; TRE1 has a paralog, TRE2, that arose from the whole genome duplication","termid":"PBO:0087928"}


id: PR:C6Y4B8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC22F3.15 gene.","definition_xrefs":["UniProtKB:C6Y4B8","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C22F3.15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22F3.15","synonyms":[{"name":"Spom972h-SPAC22F3.15","type":"exact"}],"termid":"PR:C6Y4B8"}


id: GO:0102448
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: rhamnetin + S-adenosyl-L-methionine = ombuin + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["EC:2.1.1.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016741","GO:0016740"],"is_obsolete":false,"name":"rhamnetin 4'-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-13934"],"termid":"GO:0102448"}


id: GO:0020025
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Singlet microtubule that lie underneath the inner membrane pellicle complex and emanate from the basal ring of the conoid.","definition_xrefs":["PMID:24800253","GOC:mb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule","termid":"GO:0005874"},{"relation_name":"part_of","term_name":"apical complex","termid":"GO:0020007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0005575","GO:0015630"],"is_obsolete":false,"name":"subpellicular microtubule","termid":"GO:0020025"}


id: PR:000050483
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the rng2 gene in Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras GTPase-activating-like protein rng2 (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC4F8.13c","synonyms":[{"name":"Ring assembly protein 2 (Schizosaccharomyces pombe)","type":"exact"},{"name":"SPAC4F8.13c","type":"related"},{"name":"Spom-rng2","type":"exact"},{"name":"rng2","type":"related"}],"termid":"PR:000050483"}


id: PBO:0079337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 22","termid":"PBO:0079337"}


id: FYPO:0006236
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain a normal (i.e. indistinguishable from wild type) number of monomeric ribosomes (80S monosomes) in the cytosol.","definition_xrefs":["PomBase:mah","PMID:18065650"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of macromolecular complex","termid":"FYPO:0006235"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal cytosolic monomeric ribosome level","synonyms":[{"name":"cytosolic monomeric ribosomes present at normal level","type":"exact"},{"name":"normal cytosolic 80S monosome level","type":"exact"},{"name":"normal cytosolic monomeric 80S ribosome level","type":"exact"},{"name":"normal cytosolic monomeric ribosome level during mitotic cell cycle","type":"related"},{"name":"normal cytosolic monomeric ribosome level during vegetative growth","type":"exact"},{"name":"normal cytosolic ribosome level","type":"broad"},{"name":"normal level of cytosolic monomeric ribosomes","type":"exact"}],"termid":"FYPO:0006236"}


id: PBO:0069497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 764, pseudogene","termid":"PBO:0069497"}


id: GO:1901881
data:
  {"annotated_genes":["SJAG_04312"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97967],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031117"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein depolymerization.","definition_xrefs":["PMID:12032137","GOC:BHF","GOC:rl","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein-containing complex disassembly","termid":"GO:0043243"},{"relation_name":"is_a","term_name":"regulation of protein depolymerization","termid":"GO:1901879"},{"relation_name":"positively_regulates","term_name":"protein depolymerization","termid":"GO:0051261"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04312":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein depolymerization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of protein depolymerization","type":"narrow"},{"name":"activation of protein polymer breakdown","type":"exact"},{"name":"activation of protein polymer catabolic process","type":"exact"},{"name":"activation of protein polymer catabolism","type":"exact"},{"name":"activation of protein polymer degradation","type":"exact"},{"name":"positive regulation of protein polymer breakdown","type":"exact"},{"name":"positive regulation of protein polymer catabolic process","type":"exact"},{"name":"positive regulation of protein polymer catabolism","type":"exact"},{"name":"positive regulation of protein polymer degradation","type":"exact"},{"name":"up regulation of protein depolymerization","type":"exact"},{"name":"up regulation of protein polymer breakdown","type":"exact"},{"name":"up regulation of protein polymer catabolic process","type":"exact"},{"name":"up regulation of protein polymer catabolism","type":"exact"},{"name":"up regulation of protein polymer degradation","type":"exact"},{"name":"up-regulation of protein depolymerization","type":"exact"},{"name":"up-regulation of protein polymer breakdown","type":"exact"},{"name":"up-regulation of protein polymer catabolic process","type":"exact"},{"name":"up-regulation of protein polymer catabolism","type":"exact"},{"name":"up-regulation of protein polymer degradation","type":"exact"},{"name":"upregulation of protein depolymerization","type":"exact"},{"name":"upregulation of protein polymer breakdown","type":"exact"},{"name":"upregulation of protein polymer catabolic process","type":"exact"},{"name":"upregulation of protein polymer catabolism","type":"exact"},{"name":"upregulation of protein polymer degradation","type":"exact"}],"termid":"GO:1901881","terms_by_termid":{"GO:0031117":null}}


id: FYPO:0004322
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which chromatin containing the histone H3 variant CenH3 (also called CENP-A; Cnp1 in S. pombe) are assembled over a smaller portion of the centromeric region of the chromosome than normal. CENP-A-containing nucleosomes are normally assembled into chromatin at the centromeres, encompassing the central core and centromeric inner repeat regions.","definition_xrefs":["GO:0034080","PMID:18493607","PomBase:vw","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal CENP-A containing chromatin assembly","termid":"FYPO:0003409"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000641"],"is_obsolete":false,"name":"decreased spatial extent of CENP-A containing chromatin assembly","synonyms":[{"name":"decreased extent of CENP-A containing nucleosome","type":"related"},{"name":"decreased spatial extent of CENP-A containing nucleosome assembly","type":"related"},{"name":"decreased spatial extent of CENP-A containing nucleosome assembly at centromere","type":"exact"},{"name":"decreased spatial extent of CENP-A containing nucleosome assembly during mitotic cell cycle","type":"related"},{"name":"decreased spatial extent of CENP-A containing nucleosome assembly during vegetative growth","type":"exact"},{"name":"decreased spatial extent of CENP-A deposition","type":"related"},{"name":"decreased spatial extent of CENP-A loading","type":"related"},{"name":"decreased spatial extent of CenH3-containing nucleosome assembly at centromere","type":"related"},{"name":"decreased spatial extent of DNA replication-independent nucleosome assembly at centromere","type":"exact"},{"name":"decreased spatial extent of centromere-specific histone exchange","type":"exact"},{"name":"decreased spatial extent of centromere-specific nucleosome assembly","type":"exact"},{"name":"decreased spatial extent of centromeric DNA replication-independent nucleosome assembly","type":"exact"},{"name":"reduced spatial extent of CENP-A containing nucleosome assembly","type":"exact"}],"termid":"FYPO:0004322"}


id: PBO:0072322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 8","termid":"PBO:0072322"}


id: PBO:0036370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein, flocculin Pfl9, DIPSY family","termid":"PBO:0036370"}


id: PR:P04909
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H2A-alpha that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PomBase:MAH","PMID:15226425","PMID:19965387","PMID:21516229"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2A-alpha","termid":"PR:000027558"},{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"},{"relation_name":"is_a","term_name":"core histone (Schizosaccharomyces pombe)","termid":"PR:000041293"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A-alpha (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC622.08c","secondary_identifiers":["PR:000027559","UniProtKB:P04909"],"synonyms":[{"name":"SPCC622.08C","type":"related"},{"name":"Spom972h-hta1","type":"exact"}],"termid":"PR:P04909"}


id: GO:0035184
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the transfer of a phosphate group to a threonine residue of a histone.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete histone threonine kinase activity (obsolete GO:0035184)","synonyms":[{"name":"histone-threonine kinase activity","type":"exact"}],"termid":"GO:0035184"}


id: PBO:0041592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbonic anhydrase 5A pseudogene 1","termid":"PBO:0041592"}


id: PBO:0109221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin gamma complex component 2","termid":"PBO:0109221"}


id: PBO:0049575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B.W histone 3, pseudogene","termid":"PBO:0049575"}


id: GO:0047844
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: deoxycytidine + H2O = deoxyuridine + NH3.","definition_xrefs":["MetaCyc:DEOXYCYTIDINE-DEAMINASE-RXN","EC:3.5.4.14"],"gene_count":0,"genotype_count":0,"name":"obsolete deoxycytidine deaminase activity (obsolete GO:0047844)","synonyms":[{"name":"deoxycytidine aminohydrolase activity","type":"related"}],"termid":"GO:0047844"}


id: PBO:0000744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F0-ATPase subunit J (predicted)","termid":"PBO:0000744"}


id: GO:0047293
data:
  {"annotated_genes":["SJAG_06603"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94525],"is_not":false,"summary":null,"term":"GO:0047293"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: p-hydroxybenzoate + solanesyl pyrophosphate = nonaprenyl-4-hydroxybenzoate + diphosphate.","definition_xrefs":["MetaCyc:2.5.1.39-RXN","EC:2.5.1.39"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyprenyltransferase activity","termid":"GO:0002094"}],"gene_count":1,"genes_by_uniquename":{"SJAG_06603":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016765"],"is_obsolete":false,"name":"4-hydroxybenzoate nonaprenyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:17709"],"synonyms":[{"name":"4-hydroxybenzoate transferase activity","type":"related"},{"name":"nonaprenyl-4-hydroxybenzoate transferase activity","type":"related"},{"name":"p-hydroxybenzoate dimethylallyltransferase activity","type":"related"},{"name":"p-hydroxybenzoate polyprenyltransferase activity","type":"related"},{"name":"p-hydroxybenzoic acid-polyprenyl transferase activity","type":"related"},{"name":"p-hydroxybenzoic-polyprenyl transferase activity","type":"related"},{"name":"solanesyl-diphosphate:4-hydroxybenzoate nonaprenyltransferase activity","type":"related"}],"termid":"GO:0047293","terms_by_termid":{"GO:0047293":null}}


id: PBO:0068435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 5, pseudogene","termid":"PBO:0068435"}


id: PBO:0074311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMAD family member 3","termid":"PBO:0074311"}


id: PBO:0081728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 658","termid":"PBO:0081728"}


id: GO:1904935
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell proliferation in midbrain.","definition_xrefs":["GO_REF:0000058","GOC:PARL","GOC:TermGenie","GOC:bf","PMID:24431302"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell proliferation in midbrain","termid":"GO:1904933"},{"relation_name":"is_a","term_name":"positive regulation of neural precursor cell proliferation","termid":"GO:2000179"},{"relation_name":"positively_regulates","term_name":"cell proliferation in midbrain","termid":"GO:0033278"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell proliferation in midbrain","synonyms":[{"name":"activation of cell proliferation in mesencephalon","type":"narrow"},{"name":"activation of cell proliferation in midbrain","type":"narrow"},{"name":"activation of mesencepahalic cell proliferation","type":"related"},{"name":"positive regulation of cell proliferation in mesencephalon","type":"exact"},{"name":"positive regulation of mesencepahalic cell proliferation","type":"related"},{"name":"up regulation of cell proliferation in mesencephalon","type":"exact"},{"name":"up regulation of cell proliferation in midbrain","type":"exact"},{"name":"up regulation of mesencepahalic cell proliferation","type":"related"},{"name":"up-regulation of cell proliferation in mesencephalon","type":"exact"},{"name":"up-regulation of cell proliferation in midbrain","type":"exact"},{"name":"up-regulation of mesencepahalic cell proliferation","type":"related"},{"name":"upregulation of cell proliferation in mesencephalon","type":"exact"},{"name":"upregulation of cell proliferation in midbrain","type":"exact"},{"name":"upregulation of mesencepahalic cell proliferation","type":"related"}],"termid":"GO:1904935"}


id: PBO:0063644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate mutase 1 pseudogene 1","termid":"PBO:0063644"}


id: GO:0032761
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of lymphotoxin A production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lymphotoxin A production","termid":"GO:0032681"},{"relation_name":"is_a","term_name":"positive regulation of protein metabolic process","termid":"GO:0051247"},{"relation_name":"is_a","term_name":"positive regulation of tumor necrosis factor superfamily cytokine production","termid":"GO:1903557"},{"relation_name":"positively_regulates","term_name":"lymphotoxin A production","termid":"GO:0032641"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of lymphotoxin A production","secondary_identifiers":["GO:0043017"],"synonyms":[{"name":"activation of lymphotoxin A production","type":"narrow"},{"name":"positive regulation of LTA production","type":"exact"},{"name":"positive regulation of TNF-beta production","type":"exact"},{"name":"positive regulation of lymphotoxin A biosynthetic process","type":"narrow"},{"name":"positive regulation of lymphotoxin-alpha production","type":"exact"},{"name":"positive regulation of tumor necrosis factor-beta production","type":"exact"},{"name":"stimulation of lymphotoxin A production","type":"narrow"},{"name":"up regulation of lymphotoxin A production","type":"exact"},{"name":"up-regulation of lymphotoxin A production","type":"exact"},{"name":"upregulation of lymphotoxin A production","type":"exact"}],"termid":"GO:0032761"}


id: PBO:0040825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bridging integrator 3","termid":"PBO:0040825"}


id: PBO:0077076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIAM1 antisense RNA 1","termid":"PBO:0077076"}


id: PBO:0041922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CBR4 divergent transcript","termid":"PBO:0041922"}


id: SO:0001902
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region surrounding a cis_splice site, either within 1-3 bases of the exon or 3-8 bases of the intron.","definition_xrefs":["SO:bm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary_transcript_region","termid":"SO:0000835"},{"relation_name":"part_of","term_name":"primary_transcript","termid":"SO:0000185"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splice_region","synonyms":[{"name":"splice region","type":"related"}],"termid":"SO:0001902"}


id: PBO:0004871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S3 (predicted)","termid":"PBO:0004871"}


id: PBO:0055623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3062","termid":"PBO:0055623"}


id: PBO:0044720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD/H-box helicase 11 like 7 (pseudogene)","termid":"PBO:0044720"}


id: PBO:0070970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L18 pseudogene 8","termid":"PBO:0070970"}


id: GO:0032153
data:
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id: GO:0030841
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of intermediate filament polymerization.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intermediate filament polymerization","termid":"GO:0030839"},{"relation_name":"is_a","term_name":"positive regulation of protein polymerization","termid":"GO:0032273"},{"relation_name":"is_a","term_name":"positive regulation of cytoskeleton organization","termid":"GO:0051495"},{"relation_name":"positively_regulates","term_name":"intermediate filament polymerization","termid":"GO:0045107"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"positively_regulates","termid":"GO:0007010"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0065003","GO:0007010"],"is_obsolete":false,"name":"positive regulation of intermediate filament polymerization","synonyms":[{"name":"activation of intermediate filament polymerization","type":"narrow"},{"name":"positive regulation of intermediate filament polymerization and/or depolymerization","type":"broad"},{"name":"stimulation of intermediate filament polymerization","type":"narrow"},{"name":"up regulation of intermediate filament polymerization","type":"exact"},{"name":"up-regulation of intermediate filament polymerization","type":"exact"},{"name":"upregulation of intermediate filament polymerization","type":"exact"}],"termid":"GO:0030841"}


id: GO:1900836
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of emericellin biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of xanthone-containing compound biosynthetic process","termid":"GO:1900185"},{"relation_name":"is_a","term_name":"positive regulation of secondary metabolite biosynthetic process","termid":"GO:1900378"},{"relation_name":"is_a","term_name":"regulation of emericellin biosynthetic process","termid":"GO:1900834"},{"relation_name":"positively_regulates","term_name":"emericellin biosynthetic process","termid":"GO:1900766"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"positive regulation of emericellin biosynthetic process","termid":"GO:1900836"}


id: MOD:00768
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Oxidation of methionine to methionine sulfone with neutral loss of CH3SO2H.","definition_xrefs":["PubMed:9004526","PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue with a secondary neutral loss","termid":"MOD:00431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionine oxidation with neutral loss of 80 Da","termid":"MOD:00768"}


id: PBO:0069375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 635, pseudogene","termid":"PBO:0069375"}


id: GO:0033002
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of a muscle cell population by cell division.","definition_xrefs":["CL:0000187","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population proliferation","termid":"GO:0008283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"muscle cell proliferation","synonyms":[{"name":"myocyte proliferation","type":"exact"}],"termid":"GO:0033002"}


id: PBO:0044208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cathepsin L pseudogene 8","termid":"PBO:0044208"}


id: GO:0050798
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of a T cell population following activation by an antigenic stimulus.","definition_xrefs":["GOC:add","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell proliferation","termid":"GO:0042098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"activated T cell proliferation","synonyms":[{"name":"activated T lymphocyte proliferation","type":"exact"},{"name":"activated T-cell proliferation","type":"exact"},{"name":"activated T-lymphocyte proliferation","type":"exact"},{"name":"proliferation of activated T cells","type":"exact"}],"termid":"GO:0050798"}


id: PBO:0027452
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_etoposide","termid":"PBO:0027452"}


id: PBO:0048169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G2E3 antisense RNA 1","termid":"PBO:0048169"}


id: PBO:0038560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abl interactor 2","termid":"PBO:0038560"}


id: GO:0060998
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of dendritic spine development, the process whose specific outcome is the progression of the dendritic spine over time, from its formation to the mature structure.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"regulates","term_name":"dendritic spine development","termid":"GO:0060996"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of dendritic spine development","termid":"GO:0060998"}


id: GO:0031547
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a brain-derived neurotrophic factor receptor binding to one of its physiological ligands.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor protein tyrosine kinase signaling pathway","termid":"GO:0007169"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"brain-derived neurotrophic factor receptor signaling pathway","synonyms":[{"name":"BDNF receptor signaling pathway","type":"exact"},{"name":"BDNF signalling pathway","type":"exact"},{"name":"brain-derived neurotrophic factor receptor signalling pathway","type":"exact"}],"termid":"GO:0031547"}


id: GO:0015483
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a long-chain fatty acid from one side of a membrane to the other. A long-chain fatty acid has an aliphatic tail containing 13 to 22 carbons. This transporter is a porin and so enables the energy independent passage of substances, sized less than 1000 Da, across a membrane. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria.","definition_xrefs":["TC:1.B.9.1.1","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long-chain fatty acid transmembrane transporter activity","termid":"GO:0005324"},{"relation_name":"is_a","term_name":"porin activity","termid":"GO:0015288"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"long-chain fatty acid transporting porin activity","termid":"GO:0015483"}


id: PBO:0063707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglucomutase 2","termid":"PBO:0063707"}


id: PATO:0000988
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000988 relative consistency value (obsolete PATO:0000988)","termid":"PATO:0000988"}


id: PBO:0083460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene ILS1/YBL076C","termid":"PBO:0083460"}


id: GO:0060179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The specific behavior of a male organism that is associated with reproduction.","definition_xrefs":["GOC:pr","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mating behavior","termid":"GO:0007617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"male mating behavior","termid":"GO:0060179"}


id: PBO:0110509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 66 member 1 like, pseudogene","termid":"PBO:0110509"}


id: PBO:0055830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich colipase like 1","termid":"PBO:0055830"}


id: FYPO:0003752
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the total amount of polyadenylated messenger RNA (mRNA) measured in the nucleus is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased nuclear polyadenylated mRNA level during vegetative growth","termid":"FYPO:0003119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002403","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"increased total nuclear polyadenylated mRNA level during vegetative growth","synonyms":[{"name":"increased level of bulk nuclear polyadenylated mRNA during vegetative growth","type":"exact"},{"name":"increased level of total nuclear polyadenylated mRNA during vegetative growth","type":"exact"},{"name":"increased nuclear bulk poly(A)+ mRNA level during vegetative growth","type":"exact"},{"name":"increased total nuclear polyadenylated mRNA accumulation during vegetative growth","type":"related"},{"name":"increased total nuclear polyadenylated mRNA level during mitotic cell cycle","type":"related"},{"name":"increased total nuclear polyadenylated mRNA transcript level during vegetative growth","type":"exact"},{"name":"increased total nuclear polyadenylated messenger RNA level during vegetative growth","type":"exact"},{"name":"total nuclear poly(A)+ mRNA accumulation","type":"related"},{"name":"total nuclear poly-A mRNA accumulation","type":"related"}],"termid":"FYPO:0003752"}


id: PBO:0048148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FXYD domain containing ion transport regulator 7","termid":"PBO:0048148"}


id: GO:0035682
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to toll-like receptor 21.","definition_xrefs":["GOC:pde"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toll-like receptor signaling pathway","termid":"GO:0002224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"toll-like receptor 21 signaling pathway","synonyms":[{"name":"TLR21 signaling pathway","type":"exact"},{"name":"toll-like receptor 21 signalling pathway","type":"exact"}],"termid":"GO:0035682"}


id: PBO:0042067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 137","termid":"PBO:0042067"}


id: PBO:0050627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock transcription factor 2","termid":"PBO:0050627"}


id: PBO:0039988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 6 interacting protein 1 pseudogene 2","termid":"PBO:0039988"}


id: GO:0005208
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete amyloid protein (obsolete GO:0005208)","synonyms":[{"name":"amyloid protein","type":"exact"}],"termid":"GO:0005208"}


id: PBO:0082288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARF-like small GTPase of the RAS superfamily; required for recruitment of Arl1p, a GTPase that regulates membrane traffic, to the Golgi apparatus; NatC-catalyzed N-terminal acetylation regulates Golgi membrane association mediated by interaction with membrane receptor, Sys1p; similar to ADP-ribosylation factor and orthologous to mammalian ARFRP1","termid":"PBO:0082288"}


id: PBO:0071629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a pseudogene 48","termid":"PBO:0071629"}


id: SO:0001522
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"When a translocation is simply moving genetic material from one chromosome to another.","direct_ancestors":[{"relation_name":"is_a","term_name":"translocaton_attribute","termid":"SO:0001520"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insertional","termid":"SO:0001522"}


id: GO:0038157
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the binding of the cytokine granulocyte macrophage colony-stimulating factor (GM-CSF) to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription. GM-CSF binds to a heterodimer receptor (CSF2R) consisting of an alpha ligand-binding subunit, and a common beta subunit that is shared with other cytokine receptors.","definition_xrefs":["GOC:signaling","GOC:nhn","PMID:17027509"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"granulocyte-macrophage colony-stimulating factor signaling pathway","synonyms":[{"name":"CSF2 signaling pathway","type":"exact"},{"name":"GM-CSF receptor signaling pathway","type":"exact"},{"name":"GM-CSF signaling pathway","type":"exact"},{"name":"granulocyte-macrophage colony-stimulating factor receptor signaling pathway","type":"exact"},{"name":"granulocyte-macrophage colony-stimulating factor signalling pathway","type":"related"}],"termid":"GO:0038157"}


id: PBO:0063029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAIP1 pseudogene 1","termid":"PBO:0063029"}


id: PBO:0049069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 85","termid":"PBO:0049069"}


id: GO:0003145
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the embryonic heart tube by the cells of the heart field along a linear axis.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic heart tube formation","termid":"GO:0003144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic heart tube formation via epithelial folding","termid":"GO:0003145"}


id: FYPO:0002439
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form actin cables that are shorter and thicker than normal, and abnormally oriented within the cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"thick actin cables","termid":"FYPO:0002437"},{"relation_name":"is_a","term_name":"thick actin cables","termid":"FYPO:0002437"},{"relation_name":"is_a","term_name":"short, misoriented actin cables","termid":"FYPO:0002438"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0004803","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"short, thick, misoriented actin cables","synonyms":[{"name":"short, thick, abnormally oriented actin cables","type":"exact"},{"name":"short, thick, misoriented actin cables during mitotic cell cycle","type":"related"},{"name":"short, thick, misoriented actin cables during vegetative growth","type":"exact"},{"name":"short, thick, misoriented formin-nucleated actin cables","type":"exact"}],"termid":"FYPO:0002439"}


id: GO:0050990
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The carbamoylation of the N-terminal amino acid of proteins.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal protein amino acid modification","termid":"GO:0031365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"N-terminal protein amino acid carbamoylation","synonyms":[{"name":"N-terminal protein amino acid carbamylation","type":"exact"}],"termid":"GO:0050990"}


id: GO:0048560
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that determines the orientation of an anatomical structure with reference to an axis.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axis specification","termid":"GO:0009798"},{"relation_name":"part_of","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"establishment of anatomical structure orientation","termid":"GO:0048560"}


id: PBO:0068379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 180","termid":"PBO:0068379"}


id: PBO:0046797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F2R like thrombin or trypsin receptor 3","termid":"PBO:0046797"}


id: PBO:0084767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial NADH kinase; phosphorylates NADH; also phosphorylates NAD(+) with lower specificity; required for the response to oxidative stress","termid":"PBO:0084767"}


id: SO:0000570
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"D_gene_recombination_feature","termid":"SO:0000492"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three_prime_D_recombination_signal_sequence","synonyms":[{"name":"3'D-RS","type":"exact"},{"name":"three prime D recombination signal sequence","type":"exact"},{"name":"three_prime_D-recombination_signal_sequence","type":"exact"}],"termid":"SO:0000570"}


id: GO:0006680
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glucosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of glucose by a ceramide group.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosylceramide metabolic process","termid":"GO:0006678"},{"relation_name":"is_a","term_name":"glycosylceramide catabolic process","termid":"GO:0046477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"glucosylceramide catabolic process","synonyms":[{"name":"glucosylceramide breakdown","type":"exact"},{"name":"glucosylceramide catabolism","type":"exact"},{"name":"glucosylceramide degradation","type":"exact"}],"termid":"GO:0006680"}


id: GO:0004730
data:
  {"annotated_genes":["SJAG_03213"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101604],"is_not":false,"summary":null,"term":"GO:0004730"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-ribose 5-phosphate + uracil = H2O + pseudouridine 5'-phosphate.","definition_xrefs":["RHEA:18337","EC:4.2.1.70"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03213":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"pseudouridylate synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R01055","MetaCyc:RXN0-5398"],"synonyms":[{"name":"psiUMP synthetase activity","type":"related"},{"name":"5-ribosyluracil 5-phosphate synthetase activity","type":"related"},{"name":"pseudouridine monophosphate synthase activity","type":"exact"},{"name":"pseudouridine monophosphate synthetase activity","type":"related"},{"name":"pseudouridine-5'-phosphate glycosidase activity","type":"exact"},{"name":"pseudouridylate synthetase activity","type":"related"},{"name":"pseudouridylic acid synthetase activity","type":"related"},{"name":"uracil hydro-lyase (adding D-ribose 5-phosphate)","type":"related"},{"name":"uracil hydro-lyase (adding D-ribose 5-phosphate; pseudouridine-5'-phosphate-forming)","type":"related"},{"name":"uracil hydrolyase activity","type":"related"}],"termid":"GO:0004730","terms_by_termid":{"GO:0004730":null}}


id: PBO:0048813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit gamma 2","termid":"PBO:0048813"}


id: PBO:0076901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 55","termid":"PBO:0076901"}


id: GO:0039724
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont interferes with, inhibits or disrupts a cytoplasmic pattern recognition receptor signaling pathway by reducing the activity of host I-kappa-B kinase epsilon (IKBKE/IKK-epsilon/IKK-E).","definition_xrefs":["PMID:24173023","PMID:19153231","PMID:22532683"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of IKBKE activity","secondary_identifiers":["VZ:4478"],"synonyms":[{"name":"inhibition of host IKBKE by virus","type":"related"},{"name":"suppression by virus of host IKBKE activity","type":"related"},{"name":"suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of IKBKE activity","type":"narrow"}],"termid":"GO:0039724"}


id: PBO:0070325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY3 pseudogene 14","termid":"PBO:0070325"}


id: PBO:0042192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin D2 pseudogene 1","termid":"PBO:0042192"}


id: PBO:0053825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1089","termid":"PBO:0053825"}


id: PBO:0003088
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"expressed during S phase","termid":"PBO:0003088"}


id: PBO:0070689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 60","termid":"PBO:0070689"}


id: PBO:0067592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 753, pseudogene","termid":"PBO:0067592"}


id: PBO:0051891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrin subunit alpha 2","termid":"PBO:0051891"}


id: PR:O94663
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A vacuolar-sorting protein SNF8 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02784","PANTHER:PTHR12806:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar-sorting protein dot2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC651.05c","secondary_identifiers":["UniProtKB:O94663"],"synonyms":[{"name":"ELL-associated protein of 30 kDa homolog dot2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SNF8","type":"exact"},{"name":"defective organization of telomere protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94663"}


id: PBO:0060817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-terminal EF-hand calcium binding protein 2","termid":"PBO:0060817"}


id: PBO:0049863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA helicase B","termid":"PBO:0049863"}


id: FYPO:0000430
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which fermentation is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal metabolic process during vegetative growth","termid":"FYPO:0001363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal fermentation","synonyms":[{"name":"abnormal fermentation during mitotic cell cycle","type":"related"},{"name":"abnormal fermentation during vegetative growth","type":"exact"},{"name":"abnormal fermentative metabolism","type":"exact"},{"name":"fermentative metabolism: abnormal","type":"related"}],"termid":"FYPO:0000430"}


id: PATO:0001896
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure, cavities","termid":"PATO:0002014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unlumenized","termid":"PATO:0001896"}


id: PBO:0082755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the septin ring that is required for cytokinesis; present at the ends of rod-like septin hetero-oligomers; C-terminal extension is important for recruitment of Bni5p to the mother-bud neck, which in turn is required for Myo1p recruitment and cytokinesis; septin rings at the mother-bud neck act as scaffolds for recruiting cell division factors and as barriers to prevent diffusion of specific proteins between mother and daughter cells","termid":"PBO:0082755"}


id: PBO:0072503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 32","termid":"PBO:0072503"}


id: PBO:0086791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; transcriptionally regulated by Upc2p via an upstream sterol response element; SWAT-GFP fusion protein localizes to the cell periphery, while mCherry fusion localizes to both the cell periphery and vacuole; YHL026C is not an essential gene; in 2005 the start site was moved 141 nt upstream (see Locus History)","termid":"PBO:0086791"}


id: GO:0097269
data:
  {"annotated_genes":["SJAG_01865","SJAG_04568"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87970,109858,115657,115658],"is_not":false,"summary":null,"term":"GO:0097269"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate + 7 isopentenyl diphosphate = 7 diphosphate + all-trans-decaprenyl diphosphate.","definition_xrefs":["RHEA:27802","PMID:16262699","GOC:mw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prenyltransferase activity","termid":"GO:0004659"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01865":null,"SJAG_04568":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016765","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"all-trans-decaprenyl-diphosphate synthase activity","references_by_uniquename":{"GO_REF:0000107":null,"PMID:29191091":null},"secondary_identifiers":["Reactome:R-HSA-2162253","EC:2.5.1.91"],"synonyms":[{"name":"(2E,6E)-farnesyl-diphosphate:isopentenyl-diphosphate farnesyltranstransferase activity","type":"exact"},{"name":"2-trans,6-trans-farnesyl diphosphate activity","type":"exact"}],"termid":"GO:0097269","terms_by_termid":{"GO:0006743":null,"GO:0006744":null,"GO:0097269":null}}


id: PBO:0069612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 889, pseudogene","termid":"PBO:0069612"}


id: PBO:0030468
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_pantothenate_import","termid":"PBO:0030468"}


id: PBO:0073160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC61G pseudogene 1","termid":"PBO:0073160"}


id: GO:0046813
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which a virion attaches to a host cell by binding to a receptor on the host cell surface.","definition_xrefs":["ISBN:0879694971"],"direct_ancestors":[{"relation_name":"is_a","term_name":"virion attachment to host cell","termid":"GO:0019062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"receptor-mediated virion attachment to host cell","synonyms":[{"name":"virion attachment, binding of host cell surface receptor","type":"exact"}],"termid":"GO:0046813"}


id: PBO:0039350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosylmethionine decarboxylase 1","termid":"PBO:0039350"}


id: PBO:0090870
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial carrier, iron ion","termid":"PBO:0090870"}


id: GO:0140783
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of (M)-viriditoxin, a fungal secondary metabolite with antibacterial activity.","definition_xrefs":["PMID:31304040","PMID:31045362"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyketide biosynthetic process","termid":"GO:0030639"},{"relation_name":"is_a","term_name":"mycotoxin biosynthetic process","termid":"GO:0043386"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"ether biosynthetic process","termid":"GO:1901503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0044281","GO:0019748","GO:0008150"],"is_obsolete":false,"name":"(M)-viriditoxin biosynthetic process","synonyms":[{"name":"(M)-viriditoxin anabolism","type":"exact"},{"name":"(M)-viriditoxin biosynthesis","type":"exact"},{"name":"(M)-viriditoxin formation","type":"exact"},{"name":"(M)-viriditoxin synthesis","type":"exact"},{"name":"viriditoxin anabolism","type":"broad"},{"name":"viriditoxin biosynthesis","type":"broad"},{"name":"viriditoxin formation","type":"broad"},{"name":"viriditoxin synthesis","type":"broad"}],"termid":"GO:0140783"}


id: GO:0140221
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Host-derived membrane of a pathogen-containing vacuole.","definition_xrefs":["PMID:26842840","PMID:10560000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane","termid":"GO:0016020"},{"relation_name":"part_of","term_name":"pathogen-containing vacuole","termid":"GO:0140220"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"pathogen-containing vacuole membrane","synonyms":[{"name":"pathogen inclusion membrane","type":"related"},{"name":"pathogen-containing compartment membrane","type":"exact"}],"termid":"GO:0140221"}


id: PBO:0042266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperonin containing TCP1 subunit 6 pseudogene 1","termid":"PBO:0042266"}


id: PBO:0017471
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-encompasses","termid":"PBO:0017471"}


id: PBO:0027946
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_level_during_mitosis","termid":"PBO:0027946"}


id: MOD:00713
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamic acid residue to a methylated glutamic acid, such as L-glutamate 5-methyl ester.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"},{"relation_name":"is_a","term_name":"modified L-glutamic acid residue","termid":"MOD:00906"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"methylated glutamic acid","synonyms":[{"name":"MeGlu","type":"exact"}],"termid":"MOD:00713"}


id: GO:0098768
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The meiotic cell cycle phase in eukaryotes between meiotic prophase I and meiotic metaphase I. During meiotic prometaphase I, the nuclear envelope breaks down and one kinetochore forms per chromosome. Chromosomes attach to spindle microtubules and begin to move towards the metaphase plate.","definition_xrefs":["PMID:16012859"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiosis I cell cycle phase","termid":"GO:0098764"},{"relation_name":"part_of","term_name":"meiotic M phase","termid":"GO:0051327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0051327"}],"interesting_parent_ids":["GO:0051327","GO:0008150"],"is_obsolete":false,"name":"meiotic prometaphase I","termid":"GO:0098768"}


id: PBO:0004110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF1682 family protein","termid":"PBO:0004110"}


id: PBO:0080273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 36 pseudogene","termid":"PBO:0080273"}


id: GO:0004498
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: calcidiol + H+ + NADPH + O2 = calcitriol + H2O + NADP+.","definition_xrefs":["EC:1.14.15.18","RHEA:20573"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"calcidiol 1-monooxygenase activity","secondary_identifiers":["KEGG_REACTION:R03610","Reactome:R-HSA-5602186","Reactome:R-HSA-209868","MetaCyc:CALCIDIOL-1-MONOOXYGENASE-RXN"],"synonyms":[{"name":"cytochrome P450 CYP27B","type":"narrow"},{"name":"1-hydroxylase-25-hydroxyvitamin D3 activity","type":"related"},{"name":"25-OHD-1 alpha-hydroxylase activity","type":"related"},{"name":"25-hydroxy D3-1alpha-hydroxylase activity","type":"related"},{"name":"25-hydroxy vitamin D3 1-alpha-hydroxylase activity","type":"exact"},{"name":"25-hydroxycholecalciferol 1-hydroxylase activity","type":"exact"},{"name":"25-hydroxycholecalciferol 1-monooxygenase activity","type":"related"},{"name":"25-hydroxycholecalciferol 1alpha-hydroxylase activity","type":"related"},{"name":"25-hydroxycholecalciferol-1-hydroxylase activity","type":"related"},{"name":"25-hydroxyvitamin D-1 alpha hydroxylase activity","type":"related"},{"name":"25-hydroxyvitamin D3 1alpha-hydroxylase activity","type":"related"},{"name":"calcidiol,NADPH:oxygen oxidoreductase (1-hydroxylating)","type":"exact"}],"termid":"GO:0004498"}


id: PBO:0042339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD72 molecule","termid":"PBO:0042339"}


id: PBO:0078907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (anticodon CTG) 16-1","termid":"PBO:0078907"}


id: PBO:0030115
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_RNA_processing","termid":"PBO:0030115"}


id: PBO:0050548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HPS6 biogenesis of lysosomal organelles complex 2 subunit 3","termid":"PBO:0050548"}


id: PBO:0051595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IL21R antisense RNA 1","termid":"PBO:0051595"}


id: MOD:01088
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a 2,4,6-trimethyloxybenzyl group for a hydrogen atom.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2,4,6-trimethyloxybenzyl modified residue","synonyms":[{"name":"Tmob","type":"exact"}],"termid":"MOD:01088"}


id: GO:0006782
data:
  {"annotated_genes":["SJAG_02876","SJAG_01372","SJAG_05283","SJAG_00097","SJAG_04109","SJAG_04944","SJAG_02896","SJAG_03961"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[66620,87126,88486,88983,90568,91913,92507,113067],"is_not":false,"summary":null,"term":"GO:0006782"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"porphyrin-containing compound biosynthetic process","termid":"GO:0006779"},{"relation_name":"is_a","term_name":"protoporphyrinogen IX metabolic process","termid":"GO:0046501"},{"relation_name":"part_of","term_name":"heme biosynthetic process","termid":"GO:0006783"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00097":null,"SJAG_01372":null,"SJAG_02876":null,"SJAG_02896":null,"SJAG_03961":null,"SJAG_04109":null,"SJAG_04944":null,"SJAG_05283":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"},{"rel_name":"part_of","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"protoporphyrinogen IX biosynthetic process","references_by_uniquename":{"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"protoporphyrinogen IX anabolism","type":"exact"},{"name":"protoporphyrinogen IX biosynthesis","type":"exact"},{"name":"protoporphyrinogen IX formation","type":"exact"},{"name":"protoporphyrinogen IX synthesis","type":"exact"}],"termid":"GO:0006782","terms_by_termid":{"GO:0006782":null}}


id: PBO:0017671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA snR79 (predicted)","termid":"PBO:0017671"}


id: GO:1905557
data:
  {"annotated_genes":["SJAG_00840","SJAG_00680"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89978,99791],"is_not":false,"summary":null,"term":"GO:1905557"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mitotic nuclear envelope disassembly.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:18765790"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane disassembly","termid":"GO:0010549"},{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"regulates","term_name":"mitotic nuclear membrane disassembly","termid":"GO:0007077"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00680":null,"SJAG_00840":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0061024","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"regulation of mitotic nuclear envelope disassembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of mitotic nuclear envelope breakdown","type":"exact"},{"name":"regulation of mitotic nuclear envelope catabolism","type":"exact"},{"name":"regulation of mitotic nuclear envelope degradation","type":"exact"}],"termid":"GO:1905557","terms_by_termid":{"GO:1905557":null}}


id: PBO:0080639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 87","termid":"PBO:0080639"}


id: PBO:0048845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucosamine-phosphate N-acetyltransferase 1","termid":"PBO:0048845"}


id: GO:1904864
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of beta-catenin-TCF complex assembly.","definition_xrefs":["GO_REF:0000058","PMID:18936100","GOC:bf","GOC:TermGenie","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex assembly","termid":"GO:0031333"},{"relation_name":"is_a","term_name":"regulation of beta-catenin-TCF complex assembly","termid":"GO:1904863"},{"relation_name":"negatively_regulates","term_name":"beta-catenin-TCF complex assembly","termid":"GO:1904837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"negatively_regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"negative regulation of beta-catenin-TCF complex assembly","synonyms":[{"name":"down regulation of beta-catenin-TCF complex assembly","type":"exact"},{"name":"down regulation of beta-catenin-TCF complex formation","type":"exact"},{"name":"down regulation of beta-catenin/LEF complex assembly","type":"narrow"},{"name":"down regulation of beta-catenin/LEF complex formation","type":"narrow"},{"name":"down regulation of beta-catenin/T-cell factor complex assembly","type":"related"},{"name":"down regulation of beta-catenin/T-cell factor complex formation","type":"related"},{"name":"down regulation of beta-catenin/lymphoid enhancer binding factor complex assembly","type":"related"},{"name":"down regulation of beta-catenin/lymphoid enhancer binding factor complex formation","type":"related"},{"name":"down-regulation of beta-catenin-TCF complex assembly","type":"exact"},{"name":"down-regulation of beta-catenin-TCF complex formation","type":"exact"},{"name":"down-regulation of beta-catenin/LEF complex assembly","type":"narrow"},{"name":"down-regulation of beta-catenin/LEF complex formation","type":"narrow"},{"name":"down-regulation of beta-catenin/T-cell factor complex assembly","type":"related"},{"name":"down-regulation of beta-catenin/T-cell factor complex formation","type":"related"},{"name":"down-regulation of beta-catenin/lymphoid enhancer binding factor complex assembly","type":"related"},{"name":"down-regulation of beta-catenin/lymphoid enhancer binding factor complex formation","type":"related"},{"name":"downregulation of beta-catenin-TCF complex assembly","type":"exact"},{"name":"downregulation of beta-catenin-TCF complex formation","type":"exact"},{"name":"downregulation of beta-catenin/LEF complex assembly","type":"narrow"},{"name":"downregulation of beta-catenin/LEF complex formation","type":"narrow"},{"name":"downregulation of beta-catenin/T-cell factor complex assembly","type":"related"},{"name":"downregulation of beta-catenin/T-cell factor complex formation","type":"related"},{"name":"downregulation of beta-catenin/lymphoid enhancer binding factor complex assembly","type":"related"},{"name":"downregulation of beta-catenin/lymphoid enhancer binding factor complex formation","type":"related"},{"name":"inhibition of beta-catenin-TCF complex assembly","type":"narrow"},{"name":"inhibition of beta-catenin-TCF complex formation","type":"narrow"},{"name":"inhibition of beta-catenin/LEF complex assembly","type":"narrow"},{"name":"inhibition of beta-catenin/LEF complex formation","type":"narrow"},{"name":"inhibition of beta-catenin/T-cell factor complex assembly","type":"related"},{"name":"inhibition of beta-catenin/T-cell factor complex formation","type":"related"},{"name":"inhibition of beta-catenin/lymphoid enhancer binding factor complex assembly","type":"related"},{"name":"inhibition of beta-catenin/lymphoid enhancer binding factor complex formation","type":"related"},{"name":"negative regulation of beta-catenin-TCF complex formation","type":"exact"},{"name":"negative regulation of beta-catenin/LEF complex assembly","type":"narrow"},{"name":"negative regulation of beta-catenin/LEF complex formation","type":"narrow"},{"name":"negative regulation of beta-catenin/T-cell factor complex assembly","type":"related"},{"name":"negative regulation of beta-catenin/T-cell factor complex formation","type":"related"},{"name":"negative regulation of beta-catenin/lymphoid enhancer binding factor complex assembly","type":"related"},{"name":"negative regulation of beta-catenin/lymphoid enhancer binding factor complex formation","type":"related"}],"termid":"GO:1904864"}


id: PBO:0088059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-protein ligase (E3); controls septin dynamics and spindle position checkpoint (SPOC) with ligase Dma1p by regulating recruitment of Elm1p to bud neck; regulates levels of eIF2 subunit Gcd11p, as well as abundance, localization, and ubiquitination of Cdk inhibitory kinase Swe1p; ortholog of human RNF8, similar to human Chfr; contains FHA and RING finger domains; DMA2 has a paralog, DMA1, that arose from the whole genome duplication","termid":"PBO:0088059"}


id: PR:Q9UUI2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- shf1 gene.","definition_xrefs":["UniProtKB:Q9UUI2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small histone ubiquitination factor 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22F8.12c","synonyms":[{"name":"Spom972h-shf1","type":"exact"}],"termid":"PR:Q9UUI2"}


id: PBO:0029492
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_cycle_arrest_in_meiosis_II","termid":"PBO:0029492"}


id: PBO:0029200
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_clotrimazole","termid":"PBO:0029200"}


id: GO:1903240
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of positive regulation of the force of heart contraction by chemical signal.","definition_xrefs":["PMID:17242280","GO_REF:0000058","GOC:BHF","GOC:rl","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of positive regulation of the force of heart contraction by chemical signal (obsolete GO:1903240)","synonyms":[{"name":"down regulation of positive regulation of the force of heart contraction by chemical signal","type":"exact"},{"name":"down regulation of positive regulation of the force of heart muscle contraction by chemical signal","type":"exact"},{"name":"down-regulation of positive regulation of the force of heart contraction by chemical signal","type":"exact"},{"name":"down-regulation of positive regulation of the force of heart muscle contraction by chemical signal","type":"exact"},{"name":"downregulation of positive regulation of the force of heart contraction by chemical signal","type":"exact"},{"name":"downregulation of positive regulation of the force of heart muscle contraction by chemical signal","type":"exact"},{"name":"inhibition of positive regulation of the force of heart contraction by chemical signal","type":"narrow"},{"name":"inhibition of positive regulation of the force of heart muscle contraction by chemical signal","type":"narrow"},{"name":"negative regulation of positive regulation of the force of heart contraction by chemical signal","type":"exact"},{"name":"negative regulation of positive regulation of the force of heart muscle contraction by chemical signal","type":"exact"}],"termid":"GO:1903240"}


id: PBO:0046566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 8, envelope","termid":"PBO:0046566"}


id: GO:1901430
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of syringal lignin biosynthetic process.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of secondary metabolite biosynthetic process","termid":"GO:1900378"},{"relation_name":"is_a","term_name":"regulation of syringal lignin biosynthetic process","termid":"GO:1901428"},{"relation_name":"positively_regulates","term_name":"syringal lignin biosynthetic process","termid":"GO:1901066"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"positive regulation of syringal lignin biosynthetic process","synonyms":[{"name":"activation of S-lignin biosynthetic process","type":"exact"},{"name":"activation of syringal lignin anabolism","type":"exact"},{"name":"activation of syringal lignin biosynthesis","type":"exact"},{"name":"activation of syringal lignin biosynthetic process","type":"narrow"},{"name":"activation of syringal lignin formation","type":"exact"},{"name":"activation of syringal lignin synthesis","type":"exact"},{"name":"positive regulation of S-lignin biosynthetic process","type":"exact"},{"name":"positive regulation of syringal lignin anabolism","type":"exact"},{"name":"positive regulation of syringal lignin biosynthesis","type":"exact"},{"name":"positive regulation of syringal lignin formation","type":"exact"},{"name":"positive regulation of syringal lignin synthesis","type":"exact"},{"name":"up regulation of S-lignin biosynthetic process","type":"exact"},{"name":"up regulation of syringal lignin anabolism","type":"exact"},{"name":"up regulation of syringal lignin biosynthesis","type":"exact"},{"name":"up regulation of syringal lignin biosynthetic process","type":"exact"},{"name":"up regulation of syringal lignin formation","type":"exact"},{"name":"up regulation of syringal lignin synthesis","type":"exact"},{"name":"up-regulation of S-lignin biosynthetic process","type":"exact"},{"name":"up-regulation of syringal lignin anabolism","type":"exact"},{"name":"up-regulation of syringal lignin biosynthesis","type":"exact"},{"name":"up-regulation of syringal lignin biosynthetic process","type":"exact"},{"name":"up-regulation of syringal lignin formation","type":"exact"},{"name":"up-regulation of syringal lignin synthesis","type":"exact"},{"name":"upregulation of S-lignin biosynthetic process","type":"exact"},{"name":"upregulation of syringal lignin anabolism","type":"exact"},{"name":"upregulation of syringal lignin biosynthesis","type":"exact"},{"name":"upregulation of syringal lignin biosynthetic process","type":"exact"},{"name":"upregulation of syringal lignin formation","type":"exact"},{"name":"upregulation of syringal lignin synthesis","type":"exact"}],"termid":"GO:1901430"}


id: PBO:0087207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-adenosylmethionine-dependent methyltransferase; novel N-terminal protein methyltransferase that trimethylates the N-terminal glycine residue (G2) and also dimethylates lysine (K3) on elongation factor eEF1A (Tef1p/Tef2p); has a role in rDNA silencing and in lifespan determination","termid":"PBO:0087207"}


id: PBO:0034620
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_Cutin-1","termid":"PBO:0034620"}


id: PBO:0002423
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.17.4.1","termid":"PBO:0002423"}


id: PBO:0035813
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-eMTOC_absent_from_cell","termid":"PBO:0035813"}


id: FYPO:0005013
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 8 of histone H4 occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone H4 acetylation during vegetative growth","termid":"FYPO:0005011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001985","FYPO:0001320","FYPO:0002274","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased histone H4-K8 acetylation during vegetative growth","synonyms":[{"name":"decreased histone H4-K8 acetylation during mitotic cell cycle","type":"related"},{"name":"decreased histone H4K8 acetylation during vegetative growth","type":"exact"},{"name":"reduced histone H4-K8 acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0005013"}


id: PBO:0027559
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_glycerol_level_during_cellular_response_to_osmotic_stress","termid":"PBO:0027559"}


id: PBO:0057819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3139","termid":"PBO:0057819"}


id: PBO:0079933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U6 snRNA biogenesis phosphodiesterase 1","termid":"PBO:0079933"}


id: GO:0006657
data:
  {"annotated_genes":["SJAG_00946","SJAG_03524","SJAG_00812","SJAG_02980","SJAG_01918","SJAG_03154"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[60906,84984,90782,100451,105399,108092,111841],"is_not":false,"summary":null,"term":"GO:0006657"}]},"cv_name":"biological_process","definition":"The phosphatidylcholine biosynthetic process that begins with the phosphorylation of choline and ends with the combination of CDP-choline with diacylglycerol to form phosphatidylcholine.","definition_xrefs":["MetaCyc:PWY3O-450","ISBN:0471331309"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylcholine biosynthetic process","termid":"GO:0006656"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00812":null,"SJAG_00946":null,"SJAG_01918":null,"SJAG_02980":null,"SJAG_03154":null,"SJAG_03524":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"CDP-choline pathway","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"Kennedy pathway","type":"exact"},{"name":"phosphatidylcholine biosynthesis from choline","type":"exact"}],"termid":"GO:0006657","terms_by_termid":{"GO:0006657":null}}


id: PBO:0080852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YdjC chitooligosaccharide deacetylase homolog","termid":"PBO:0080852"}


id: PBO:0085985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; required for efficient 5' processing of mitochondrial tRNAs, for respiratory growth and mitochondrial genome maintenance; null mutation results in a decrease in plasma membrane electron transport; localizes to the matrix side of the inner mitochondrial membrane","termid":"PBO:0085985"}


id: FYPO:0007197
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial fission, the division of a mitochondrion into two or more separate compartments, occurs to a greater extent than normal.","definition_xrefs":["PMID:30602572","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitochondrial fission","termid":"FYPO:0004340"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased mitochondrial fission","synonyms":[{"name":"increased frequency of mitochondrial fission","type":"exact"},{"name":"increased mitochondrial division","type":"exact"},{"name":"increased mitochondrial fission during mitotic cell cycle","type":"related"},{"name":"increased mitochondrial fission during vegetative growth","type":"exact"},{"name":"increased mitochondrial proliferation","type":"related"}],"termid":"FYPO:0007197"}


id: SO:0000487
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene, one J-gene and one C-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"J_gene_segment","termid":"SO:0000470"},{"relation_name":"has_part","term_name":"C_gene_segment","termid":"SO:0000478"},{"relation_name":"has_part","term_name":"VDJ_gene_segment","termid":"SO:0000574"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VDJ_J_C_cluster","synonyms":[{"name":"(VDJ)-J-C-CLUSTER","type":"exact"},{"name":"VDJ J C cluster","type":"exact"}],"termid":"SO:0000487"}


id: GO:0004380
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + glycoprotein-alpha-L-fucosyl-(1,2)-D-galactose = UDP + glycoprotein-N-acetyl-alpha-D-galactosaminyl-(1,3)-(alpha-L-fucosyl-(1,2))-D-galactose.","definition_xrefs":["EC:2.4.1.40"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylgalactosaminyltransferase activity","termid":"GO:0008376"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a glycoprotein","termid":"GO:0140103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016757","GO:0140096","GO:0003824"],"is_obsolete":false,"name":"glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity","secondary_identifiers":["Reactome:R-HSA-9033959","Reactome:R-HSA-9034042","RHEA:19021","MetaCyc:2.4.1.40-RXN"],"synonyms":[{"name":"A transferase activity","type":"related"},{"name":"A-transferase activity","type":"related"},{"name":"UDP-GalNAc:Fucalpha1->2Galalpha1->3-N-acetylgalactosaminyltransferase activity","type":"related"},{"name":"UDP-N-acetyl-D-galactosamine:alpha-L-fucosyl-1,2-D-galactose 3-N-acetyl-D-galactosaminyltransferase activity","type":"related"},{"name":"UDP-N-acetyl-D-galactosamine:glycoprotein-alpha-L-fucosyl-(1,2)-D-galactose 3-N-acetyl-D-galactosaminyltransferase activity","type":"related"},{"name":"alpha-3-N-acetylgalactosaminyltransferase activity","type":"related"},{"name":"blood-group substance A-dependent acetylgalactosaminyltransferase activity","type":"related"},{"name":"blood-group substance alpha-acetyltransferase activity","type":"related"},{"name":"fucosylgalactose acetylgalactosaminyltransferase activity","type":"related"},{"name":"fucosylgalactose alpha-N-acetylgalactosaminyltransferase activity","type":"related"},{"name":"fucosylglycoprotein alpha-N-acetylgalactosaminyltransferase activity","type":"related"},{"name":"histo-blood group A acetylgalactosaminyltransferase activity","type":"narrow"},{"name":"histo-blood group A glycosyltransferase (Fucalpha1->2Galalpha1->3-N-acetylgalactosaminyltransferase)","type":"related"},{"name":"histo-blood group A transferase activity","type":"related"}],"termid":"GO:0004380"}


id: GO:1990667
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex consisting of the serine protease PCSK9 (proprotein convertase subtilisin/kexin-9) and annexin A2 (AnxA2).","definition_xrefs":["GOC:BHF","GOC:nc","PMID:22848640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"PCSK9-AnxA2 complex","synonyms":[{"name":"PCSK9-Annexin A2 complex","type":"exact"},{"name":"PCSK9.AnxA2 complex","type":"exact"},{"name":"PCSK9:ANXA2 complex","type":"exact"}],"termid":"GO:1990667"}


id: PBO:0055468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2901","termid":"PBO:0055468"}


id: PBO:0043869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine rich C-terminal 1","termid":"PBO:0043869"}


id: PBO:0054832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2245","termid":"PBO:0054832"}


id: PBO:0061312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NPHP3 antisense RNA 1","termid":"PBO:0061312"}


id: PBO:0090590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall alpha-amylase homolog Aah3","termid":"PBO:0090590"}


id: GO:0060195
data:
  {"annotated_genes":["SJAG_00266"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104084],"is_not":false,"summary":null,"term":"GO:0060195"}]},"cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of the synthesis of antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis, on a template of DNA.","definition_xrefs":["PMID:18075583","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of DNA-templated transcription","termid":"GO:0045892"},{"relation_name":"is_a","term_name":"regulation of antisense RNA transcription","termid":"GO:0060194"},{"relation_name":"negatively_regulates","term_name":"antisense RNA transcription","termid":"GO:0009300"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00266":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"}],"interesting_parent_ids":["GO:0006355","GO:0010467","GO:0006351","GO:0008150"],"is_obsolete":false,"name":"negative regulation of antisense RNA transcription","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0060195","terms_by_termid":{"GO:0060195":null}}


id: PBO:0027521
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_cycle","termid":"PBO:0027521"}


id: PBO:0055624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3063","termid":"PBO:0055624"}


id: GO:0045747
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the Notch signaling pathway.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of Notch signaling pathway","termid":"GO:0008593"},{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"positively_regulates","term_name":"Notch signaling pathway","termid":"GO:0007219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of Notch signaling pathway","synonyms":[{"name":"activation of Notch signaling pathway","type":"narrow"},{"name":"positive regulation of N signaling pathway","type":"exact"},{"name":"positive regulation of N signalling pathway","type":"exact"},{"name":"positive regulation of Notch signalling pathway","type":"exact"},{"name":"stimulation of Notch signaling pathway","type":"narrow"},{"name":"up regulation of Notch signaling pathway","type":"exact"},{"name":"up-regulation of Notch signaling pathway","type":"exact"},{"name":"upregulation of Notch signaling pathway","type":"exact"}],"termid":"GO:0045747"}


id: PBO:0075772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine and arginine rich splicing factor 3","termid":"PBO:0075772"}


id: PBO:0050947
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon alpha 21","termid":"PBO:0050947"}


id: GO:0102499
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: hydrogenphosphate + a plant soluble heteroglycan = alpha-D-glucose 1-phosphate + a plant soluble heteroglycan.","definition_xrefs":["GOC:pz","RHEA:41732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016757","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"SHG alpha-glucan phosphorylase activity","secondary_identifiers":["EC:2.4.1.1","MetaCyc:RXN-14353"],"termid":"GO:0102499"}


id: GO:0102822
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: quercetin-7-olate + S-adenosyl-L-methionine = H+ + isorhamnetin + S-adenosyl-L-homocysteine.","definition_xrefs":["EC:2.1.1.42","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016741"],"is_obsolete":false,"name":"quercetin 3'-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-8262","RHEA:55332"],"termid":"GO:0102822"}


id: GO:0097436
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The dormancy process that results in entry into dormancy. Dormancy (sometimes called a dormant state) is a suspension of most physiological activity and growth that can be reactivated.","definition_xrefs":["GOC:PO_curators","PO_REF:00009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dormancy process","termid":"GO:0022611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"entry into dormancy","synonyms":[{"name":"induction of dormancy","type":"exact"}],"termid":"GO:0097436"}


id: PBO:0062807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxysterol binding protein like 7","termid":"PBO:0062807"}


id: GO:0012507
data:
  {"annotated_genes":["SJAG_00284","SJAG_04023","SJAG_05345","SJAG_01939","SJAG_03153","SJAG_01633","SJAG_00557","SJAG_04513","SJAG_03558","SJAG_05344","SJAG_00906","SJAG_02539","SJAG_00072","SJAG_03907","SJAG_02349"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[91689,97198,104138,105913,110293],"is_not":false,"summary":null,"term":"GO:0012507"},{"annotations":[74085,112686,70504,108817,102674,108080,89491,104840,91649,106318],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030127"}]},"cv_name":"cellular_component","definition":"The lipid bilayer surrounding a vesicle transporting substances from the endoplasmic reticulum to the Golgi.","definition_xrefs":["GOC:tb","GOC:ascb_2009","GOC:dph","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport vesicle membrane","termid":"GO:0030658"},{"relation_name":"is_a","term_name":"coated vesicle membrane","termid":"GO:0030662"},{"relation_name":"part_of","term_name":"COPII-coated ER to Golgi transport vesicle","termid":"GO:0030134"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00072":null,"SJAG_00284":null,"SJAG_00557":null,"SJAG_00906":null,"SJAG_01633":null,"SJAG_01939":null,"SJAG_02349":null,"SJAG_02539":null,"SJAG_03153":null,"SJAG_03558":null,"SJAG_03907":null,"SJAG_04023":null,"SJAG_04513":null,"SJAG_05344":null,"SJAG_05345":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"ER to Golgi transport vesicle membrane","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0030664"],"synonyms":[{"name":"COPII coated vesicle membrane","type":"exact"},{"name":"ER to Golgi constitutive secretory pathway transport vesicle membrane","type":"exact"},{"name":"ER-Golgi transport vesicle membrane","type":"exact"},{"name":"endoplasmic reticulum to Golgi transport vesicle membrane","type":"exact"},{"name":"endoplasmic reticulum-Golgi transport vesicle membrane","type":"exact"}],"termid":"GO:0012507","terms_by_termid":{"GO:0012507":null,"GO:0030127":null}}


id: GO:0000026
data:
  {"annotated_genes":["SJAG_03082","SJAG_02519","SJAG_00747","SJAG_05327","SJAG_00334","SJAG_03878","SJAG_00598","SJAG_04906","SJAG_01264","SJAG_01021"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94241,96886,100625,101166,102065,105137,111307,114426],"is_not":false,"summary":null,"term":"GO:0000026"},{"annotations":[87277],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052926"},{"annotations":[87278],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052918"},{"annotations":[112833],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004377"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a mannose residue to an oligosaccharide, forming an alpha-(1->2) linkage.","definition_xrefs":["PMID:10521541","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannosyltransferase activity","termid":"GO:0000030"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00334":null,"SJAG_00598":null,"SJAG_00747":null,"SJAG_01021":null,"SJAG_01264":null,"SJAG_02519":null,"SJAG_03082":null,"SJAG_03878":null,"SJAG_04906":null,"SJAG_05327":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"alpha-1,2-mannosyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-446187","Reactome:R-HSA-4720478","Reactome:R-HSA-9035514","Reactome:R-HSA-446215","Reactome:R-HSA-446216","Reactome:R-HSA-4551297"],"termid":"GO:0000026","terms_by_termid":{"GO:0000026":null,"GO:0004377":null,"GO:0052918":null,"GO:0052926":null}}


id: PBO:0077527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 241","termid":"PBO:0077527"}


id: _global:directly_negatively_regulates_activity_of
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B. \\nFor example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.","direct_ancestors":[{"relation_name":"is_a","term_name":"directly_regulates_activity_of","termid":"_global:directly_regulates_activity_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"directly_negatively_regulates_activity_of","secondary_identifiers":["RO:0002449"],"synonyms":[{"name":"molecularly decreases activity of","type":"exact"}],"termid":"_global:directly_negatively_regulates_activity_of"}


id: PBO:0029267
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_serine_phosphorylation_during_cellular_response_to_DNA_damage","termid":"PBO:0029267"}


id: FYPO:0003854
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to an oligomycin antibiotic. Cells stop growing (and may die) at a concentration of oligomycin that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0005447","FYPO:0000139","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to oligomycin","synonyms":[{"name":"hypersensitive to oligomycin","type":"exact"},{"name":"sensitive to oligomycin during mitotic cell cycle","type":"related"},{"name":"sensitive to oligomycin during vegetative growth","type":"exact"}],"termid":"FYPO:0003854"}


id: SO:0001983
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A 5' UTR variant where a premature start codon is introduced, moved or lost.","definition_xrefs":["SANGER:am"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5_prime_UTR_variant","termid":"SO:0001623"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5_prime_UTR_premature_start_codon_variant","synonyms":[{"name":"5' UTR premature start codon variant","type":"exact"}],"termid":"SO:0001983"}


id: PBO:0003009
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteomics data indicates an N terminally extended version of this gene which would contain and upstream stop codon and a frameshift","termid":"PBO:0003009"}


id: FYPO:0000993
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol-3-phosphate measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered cellular phosphatidylinositol-3-phosphate level","termid":"FYPO:0000992"},{"relation_name":"is_a","term_name":"decreased cellular phosphoinositide level","termid":"FYPO:0005588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased cellular phosphatidylinositol-3-phosphate level","synonyms":[{"name":"decreased PI-3-P accumulation","type":"related"},{"name":"decreased cellular PI(3)P level","type":"exact"},{"name":"decreased cellular PI-3-P level","type":"exact"},{"name":"decreased cellular phosphatidylinositol-3-phosphate level during mitotic cell cycle","type":"related"},{"name":"decreased cellular phosphatidylinositol-3-phosphate level during vegetative growth","type":"exact"},{"name":"reduced cellular phosphatidylinositol-3-phosphate level","type":"exact"}],"termid":"FYPO:0000993"}


id: PBO:0051614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 36 receptor antagonist","termid":"PBO:0051614"}


id: PBO:0085115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleolar DEAD-box protein required for ribosome assembly and function; including synthesis of 60S ribosomal subunits; constituent of 66S pre-ribosomal particles","termid":"PBO:0085115"}


id: GO:0034219
data:
  {"annotated_genes":["SJAG_00057","SJAG_02958","SJAG_03608","SJAG_03960","SJAG_03820","SJAG_03606","SJAG_04905","SJAG_04068"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57455,58067,60412,60447,62240,64224,88629,110270,113278],"is_not":false,"summary":null,"term":"GO:0034219"},{"annotations":[106763],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140425"},{"annotations":[106764,110275],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046323"},{"annotations":[110276,113282],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098708"},{"annotations":[99105],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008645"},{"annotations":[91906],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106081"},{"annotations":[91907],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106082"}]},"cv_name":"biological_process","definition":"The process in which a carbohydrate is transported across a membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate transport","termid":"GO:0008643"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00057":null,"SJAG_02958":null,"SJAG_03606":null,"SJAG_03608":null,"SJAG_03820":null,"SJAG_03960":null,"SJAG_04068":null,"SJAG_04905":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"carbohydrate transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"carbohydrate membrane transport","type":"exact"},{"name":"transmembrane carbohydrate transport","type":"exact"}],"termid":"GO:0034219","terms_by_termid":{"GO:0008645":null,"GO:0034219":null,"GO:0046323":null,"GO:0098708":null,"GO:0106081":null,"GO:0106082":null,"GO:0140425":null}}


id: PBO:0068723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4atac small nuclear 12, pseudogene","termid":"PBO:0068723"}


id: GO:1901992
data:
  {"annotated_genes":["SJAG_01297","SJAG_03486","SJAG_03602","SJAG_02342","SJAG_04597","SJAG_01901","SJAG_03591","SJAG_02498","SJAG_02404","SJAG_03048","SJAG_03353","SJAG_03126","SJAG_00214","SJAG_01679","SJAG_04486","SJAG_02380","SJAG_01805","SJAG_03067","SJAG_04573","SJAG_01000","SJAG_00256","SJAG_04259","SJAG_01801","SJAG_03592","SJAG_03699","SJAG_02451","SJAG_01401","SJAG_03309","SJAG_02723","SJAG_01456","SJAG_01210","SJAG_01837","SJAG_00082","SJAG_02169","SJAG_03681","SJAG_00883","SJAG_04140","SJAG_01825","SJAG_04968","SJAG_02592","SJAG_00117","SJAG_00666","SJAG_00216","SJAG_02336","SJAG_04332","SJAG_01311"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100015,111993,95707,103343,108066,104366,110368,109891,86884],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902426"},{"annotations":[90332],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140499"},{"annotations":[86166,89891,98495,108068],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031536"},{"annotations":[97740,102071,102763,113150,101914],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1900087"},{"annotations":[112580,90674,89942,107309,87872,106456,92457,90504,103346,99612,112768,94567,88278,97877,84251,104688,95123,84242,90543],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010971"},{"annotations":[84050,97505],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905287"},{"annotations":[107480,110864,110369,93833,96256,89945,98228,98502],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045842"},{"annotations":[87884,111997,105009,102074,111428,97742],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007089"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mitotic cell cycle phase transition.","definition_xrefs":["PMID:22841721","GOC:TermGenie","GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of mitotic cell cycle","termid":"GO:0045931"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle phase transition","termid":"GO:1901989"},{"relation_name":"is_a","term_name":"regulation of mitotic cell cycle phase transition","termid":"GO:1901990"},{"relation_name":"positively_regulates","term_name":"mitotic cell cycle phase transition","termid":"GO:0044772"}],"gene_count":46,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00117":null,"SJAG_00214":null,"SJAG_00216":null,"SJAG_00256":null,"SJAG_00666":null,"SJAG_00883":null,"SJAG_01000":null,"SJAG_01210":null,"SJAG_01297":null,"SJAG_01311":null,"SJAG_01401":null,"SJAG_01456":null,"SJAG_01679":null,"SJAG_01801":null,"SJAG_01805":null,"SJAG_01825":null,"SJAG_01837":null,"SJAG_01901":null,"SJAG_02169":null,"SJAG_02336":null,"SJAG_02342":null,"SJAG_02380":null,"SJAG_02404":null,"SJAG_02451":null,"SJAG_02498":null,"SJAG_02592":null,"SJAG_02723":null,"SJAG_03048":null,"SJAG_03067":null,"SJAG_03126":null,"SJAG_03309":null,"SJAG_03353":null,"SJAG_03486":null,"SJAG_03591":null,"SJAG_03592":null,"SJAG_03602":null,"SJAG_03681":null,"SJAG_03699":null,"SJAG_04140":null,"SJAG_04259":null,"SJAG_04332":null,"SJAG_04486":null,"SJAG_04573":null,"SJAG_04597":null,"SJAG_04968":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044772"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044772"},{"rel_name":"positively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0044772","GO:0007049"],"is_obsolete":false,"name":"positive regulation of mitotic cell cycle phase transition","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of mitotic cell cycle phase transition","type":"narrow"},{"name":"up regulation of mitotic cell cycle phase transition","type":"exact"},{"name":"up-regulation of mitotic cell cycle phase transition","type":"exact"},{"name":"upregulation of mitotic cell cycle phase transition","type":"exact"}],"termid":"GO:1901992","terms_by_termid":{"GO:0007089":null,"GO:0010971":null,"GO:0031536":null,"GO:0045842":null,"GO:0140499":null,"GO:1900087":null,"GO:1902426":null,"GO:1905287":null}}


id: GO:0007568
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).","definition_xrefs":["GOC:PO_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete aging (obsolete GO:0007568)","synonyms":[{"name":"ageing","type":"exact"}],"termid":"GO:0007568"}


id: PBO:0030702
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_during_cellular_response_to_hydrogen_peroxide","termid":"PBO:0030702"}


id: GO:0061040
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a female gonad is generated and organized.","definition_xrefs":["GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gonad morphogenesis","termid":"GO:0035262"},{"relation_name":"part_of","term_name":"female gonad development","termid":"GO:0008585"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"female gonad morphogenesis","synonyms":[{"name":"ovary morphogenesis","type":"related"}],"termid":"GO:0061040"}


id: FYPO:0003013
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which contractile ring disassembly is abnormal. Contractile ring disassembly is the part of cytokinesis in which the actomyosin contractile ring is disaggregated into its constituent components.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cytokinesis","termid":"FYPO:0000032"},{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring organization","termid":"FYPO:0004738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001320","FYPO:0001985","FYPO:0004803","FYPO:0005447","FYPO:0000002","FYPO:0000032"],"is_obsolete":false,"name":"abnormal actomyosin contractile ring disassembly","synonyms":[{"name":"abnormal actomyosin contractile ring disassembly during mitotic cell cycle","type":"related"},{"name":"abnormal actomyosin contractile ring disassembly during vegetative growth","type":"exact"},{"name":"abnormal contractile ring disassembly","type":"exact"},{"name":"abnormal cytokinesis, actomyosin contractile ring disassembly","type":"exact"},{"name":"abnormal cytokinetic contractile ring disassembly","type":"exact"},{"name":"abnormal cytokinetic ring disassembly","type":"related"},{"name":"abnormal mitotic actomyosin contractile ring disassembly","type":"exact"},{"name":"abnormal mitotic contractile ring disassembly","type":"exact"}],"termid":"FYPO:0003013"}


id: GO:0002289
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of a NK T cell population by cell division as part of an immune response.","definition_xrefs":["PMID:15771592","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NK T cell proliferation","termid":"GO:0001866"},{"relation_name":"is_a","term_name":"NK T cell activation involved in immune response","termid":"GO:0002288"},{"relation_name":"is_a","term_name":"alpha-beta T cell proliferation involved in immune response","termid":"GO:0002310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"NK T cell proliferation involved in immune response","synonyms":[{"name":"NK T cell proliferation during immune response","type":"related"},{"name":"NK T lymphocyte proliferation during immune response","type":"related"},{"name":"NK T-cell proliferation during immune response","type":"related"},{"name":"NK T-lymphocyte proliferation during immune response","type":"related"},{"name":"natural killer T lymphocyte proliferation during immune response","type":"related"},{"name":"natural killer T-cell proliferation during immune response","type":"related"},{"name":"natural killer T-lymphocyte proliferation during immune response","type":"related"}],"termid":"GO:0002289"}


id: PR:Q9Y7L6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An AP-2 complex subunit sigma that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11753:SF6","PRO:DNx","OMA:SCHPO03413"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AP-2 complex subunit sigma (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC685.04c","secondary_identifiers":["UniProtKB:Q9Y7L6"],"synonyms":[{"name":"Spom972h-AP2S1","type":"exact"},{"name":"adaptin small chain (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"clathrin assembly protein 2 sigma small chain (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"sigma2-adaptin (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9Y7L6"}


id: GO:0039589
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the activity of the host TAP complex, a heterodimer composed of the subunits TAP1 and TAP2 (transporter associated with antigen presentation). The TAP complex functions in the transport of antigenic peptides from the cytosol to the lumen of the endoplasmic reticulum, where they are loaded onto the MHC class I. By inhibiting the TAP complex, the virus prevents viral particles being presented at the cell surface, and thus evades the host immune response.","definition_xrefs":["VZ:817","UniProtKB-KW:KW-1107","PMID:16691491"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host TAP complex (obsolete GO:0039589)","synonyms":[{"name":"inhibition of host TAP by virus","type":"exact"}],"termid":"GO:0039589"}


id: GO:0140068
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: crotonyl-CoA + histone = CoA + crotonyl-histone.","definition_xrefs":["PMID:25818647"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide crotonyltransferase activity","termid":"GO:0140064"},{"relation_name":"is_a","term_name":"histone modifying activity","termid":"GO:0140993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0003824","GO:0140096","GO:0016746","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"histone crotonyltransferase activity","termid":"GO:0140068"}


id: PBO:0045626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 38 (pseudogene)","termid":"PBO:0045626"}


id: PBO:0079759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncoupling protein 2","termid":"PBO:0079759"}


id: PBO:0042664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEA cell adhesion molecule 20","termid":"PBO:0042664"}


id: GO:0019078
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A form of viral release in which the viral particles bud out through cellular membranes, resulting in cell lysis. It is also a form of viral envelopment.","definition_xrefs":["ISBN:0781702534"],"gene_count":0,"genotype_count":0,"name":"obsolete lytic viral budding (obsolete GO:0019078)","synonyms":[{"name":"lytic viral budding","type":"exact"}],"termid":"GO:0019078"}


id: GO:1904833
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of removal of superoxide radicals.","definition_xrefs":["GOC:BHF_miRNA","GOC:rph","GOC:BHF","GO_REF:0000058","GOC:TermGenie","PMID:22836756"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of removal of superoxide radicals","termid":"GO:2000121"},{"relation_name":"is_a","term_name":"positive regulation of reactive oxygen species metabolic process","termid":"GO:2000379"},{"relation_name":"positively_regulates","term_name":"removal of superoxide radicals","termid":"GO:0019430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0098754"},{"rel_name":"positively_regulates","termid":"GO:0098754"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0098754","GO:0008150"],"is_obsolete":false,"name":"positive regulation of removal of superoxide radicals","synonyms":[{"name":"activation of cellular detoxification of superoxide radicals","type":"narrow"},{"name":"activation of removal of O2-","type":"narrow"},{"name":"activation of removal of oxygen free radicals","type":"narrow"},{"name":"activation of removal of superoxide radicals","type":"narrow"},{"name":"positive regulation of cellular detoxification of superoxide radicals","type":"exact"},{"name":"positive regulation of removal of O2-","type":"exact"},{"name":"positive regulation of removal of oxygen free radicals","type":"exact"},{"name":"up regulation of cellular detoxification of superoxide radicals","type":"exact"},{"name":"up regulation of removal of O2-","type":"exact"},{"name":"up regulation of removal of oxygen free radicals","type":"exact"},{"name":"up regulation of removal of superoxide radicals","type":"exact"},{"name":"up-regulation of cellular detoxification of superoxide radicals","type":"exact"},{"name":"up-regulation of removal of O2-","type":"exact"},{"name":"up-regulation of removal of oxygen free radicals","type":"exact"},{"name":"up-regulation of removal of superoxide radicals","type":"exact"},{"name":"upregulation of cellular detoxification of superoxide radicals","type":"exact"},{"name":"upregulation of removal of O2-","type":"exact"},{"name":"upregulation of removal of oxygen free radicals","type":"exact"},{"name":"upregulation of removal of superoxide radicals","type":"exact"}],"termid":"GO:1904833"}


id: PR:Q09886
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug42 gene.","definition_xrefs":["UniProtKB:Q09886","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 42 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC584.12","synonyms":[{"name":"Spom972h-mug42","type":"exact"}],"termid":"PR:Q09886"}


id: PBO:0055283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2710","termid":"PBO:0055283"}


id: PBO:0032742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-Tyr-tRNA deacylase Dtd1 (predicted)","termid":"PBO:0032742"}


id: PR:O94316
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 116 kDa U5 small nuclear ribonucleoprotein component that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03969","PANTHER:PTHR23115:SF5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-splicing factor cwf10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC215.12","secondary_identifiers":["UniProtKB:O94316"],"synonyms":[{"name":"114 kDa U5 small nuclear ribonucleoprotein component homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-EFTUD2","type":"exact"},{"name":"complexed with cdc5 protein 10 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94316"}


id: GO:1904724
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any membrane-enclosed lumen that is part of a tertiary granule.","definition_xrefs":["PMID:23650620","GO_REF:0000064","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular organelle lumen","termid":"GO:0070013"},{"relation_name":"part_of","term_name":"tertiary granule","termid":"GO:0070820"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0031410","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"tertiary granule lumen","synonyms":[{"name":"gelatinase granule membrane-enclosed lumen","type":"related"},{"name":"membrane-enclosed lumen of gelatinase granule","type":"exact"},{"name":"membrane-enclosed lumen of tertiary granule","type":"exact"},{"name":"tertiary granule membrane-enclosed lumen","type":"exact"}],"termid":"GO:1904724"}


id: FYPO:0004224
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 20 of histone H4 occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone methylation during vegetative growth","termid":"FYPO:0000870"},{"relation_name":"is_a","term_name":"abnormal histone H4-K20 methylation during vegetative growth","termid":"FYPO:0004215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002274","FYPO:0001985","FYPO:0005447","FYPO:0002494","FYPO:0001320"],"is_obsolete":false,"name":"decreased histone H4-K20 trimethylation during vegetative growth","synonyms":[{"name":"decreased H4K20me3 during vegetative growth","type":"exact"},{"name":"decreased histone H4-K20 trimethylation during mitotic cell cycle","type":"related"},{"name":"decreased histone H4K20 trimethylation during vegetative growth","type":"exact"},{"name":"decreased histone lysine H4-K20 trimethylation during vegetative growth","type":"exact"},{"name":"reduced histone H4-K20 trimethylation during vegetative growth","type":"exact"}],"termid":"FYPO:0004224"}


id: PATO:0000065
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000065 relative percentage (obsolete PATO:0000065)","termid":"PATO:0000065"}


id: PBO:0000018
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protease_activator","termid":"PBO:0000018"}


id: PBO:0030081
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_cell_tip","termid":"PBO:0030081"}


id: FYPO:0001867
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of mating projection assembly is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal shmoo formation","termid":"FYPO:0000568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000301"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000301","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased shmoo formation","synonyms":[{"name":"increased conjugation tube formation","type":"exact"},{"name":"increased mating projection assembly","type":"exact"},{"name":"increased mating projection formation","type":"exact"},{"name":"increased shmoo assembly","type":"exact"}],"termid":"FYPO:0001867"}


id: PBO:0027601
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_actomyosin_contractile_ring_morphology","termid":"PBO:0027601"}


id: GO:0005545
data:
  {"annotated_genes":["SJAG_01748","SJAG_01722"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[102130,104321],"is_not":false,"summary":null,"term":"GO:0005545"}]},"cv_name":"molecular_function","definition":"Binding to a phosphatidylinositol, a glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol binding","termid":"GO:0035091"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01722":null,"SJAG_01748":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0008289","GO:0003674"],"is_obsolete":false,"name":"1-phosphatidylinositol binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0005545","terms_by_termid":{"GO:0005545":null}}


id: FYECO:0000272
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"}},"annotation_feature_type":"gene","cv_annotations":{"fission_yeast_phenotype_condition":[{"annotations":[115582,115570],"is_not":false,"summary":null,"term":"FYECO:0000272"}]},"cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in medium containing glucose (typically <2% w/v), salts, water and with no nitrogen source.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_02592":null},"genotype_count":2,"genotypes_by_uniquename":{"atf1delta":{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"is_obsolete":false,"name":"glucose MM, no nitrogen","references_by_uniquename":{"PMID:31150379":null},"single_locus_annotated_genes":["SJAG_00266","SJAG_02592"],"single_locus_genotype_uniquenames":["atf1delta","sty1delta"],"termid":"FYECO:0000272","terms_by_termid":{"FYECO:0000272":null,"FYPO_EXT:0000001":null}}


id: GO:1903127
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of centriole-centriole cohesion.","definition_xrefs":["GOC:als","PMID:24554434","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of centriole-centriole cohesion","termid":"GO:0030997"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle process","termid":"GO:0090068"},{"relation_name":"positively_regulates","term_name":"centriole-centriole cohesion","termid":"GO:0010457"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0000226","GO:0008150","GO:0007010","GO:0007049"],"is_obsolete":false,"name":"positive regulation of centriole-centriole cohesion","synonyms":[{"name":"activation of centriole-centriole cohesion","type":"narrow"},{"name":"up regulation of centriole-centriole cohesion","type":"exact"},{"name":"up-regulation of centriole-centriole cohesion","type":"exact"},{"name":"upregulation of centriole-centriole cohesion","type":"exact"}],"termid":"GO:1903127"}


id: PBO:0017409
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_improper_part","termid":"PBO:0017409"}


id: FYPO:0001489
data:
  {"alleles_by_uniquename":{"SJAG_00409:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00409","name":"gpd1delta","uniquename":"SJAG_00409:allele-1"},"SJAG_00871:allele-1":{"allele_type":"amino_acid_mutation","description":"cut3-T19E","gene_uniquename":"SJAG_00871","name":"cut3-T19E","uniquename":"SJAG_00871:allele-1"},"SJAG_04332:allele-1":{"allele_type":"amino_acid_mutation","description":"I30T,T572P","gene_uniquename":"SJAG_04332","name":"cdc25-D9","uniquename":"SJAG_04332:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115484],"is_not":false,"summary":null,"term":"FYPO:0001489"}],"single_locus_phenotype":[{"annotations":[115620],"is_not":false,"summary":null,"term":"FYPO:0001489"},{"annotations":[115447],"is_not":false,"rel_names":["has_part","is_a"],"summary":null,"term":"FYPO:0007701"},{"annotations":[115481],"is_not":false,"rel_names":["is_a","has_part"],"summary":null,"term":"FYPO:0003976"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a cell is inviable in the phase of the life cycle during which wild type cells undergo vegetative growth.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable cell","termid":"FYPO:0000049"},{"relation_name":"is_a","term_name":"cellular physical quality phenotype during vegetative growth","termid":"FYPO:0001321"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00409":null,"SJAG_00871":null,"SJAG_04332":null,"SJAG_04464":null},"genotype_count":4,"genotypes_by_uniquename":{"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc25-D9(I30T,T572P aa)","display_uniquename":"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04332:allele-1","expression":"Not assayed or wild type"}]}]},"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"gpd1delta":{"display_name":"gpd1delta","display_uniquename":"gpd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00409:allele-1","expression":"Null"}]}]},"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_04464","SJAG_00871"],"name":"inviable vegetative cell","references_by_uniquename":{"PMID:25866389":null,"PMID:28954740":null,"PMID:37164017":null},"single_locus_annotated_genes":["SJAG_04332","SJAG_00409","SJAG_04464"],"single_locus_genotype_uniquenames":["pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","gpd1delta"],"synonyms":[{"name":"inviable cell during vegetative growth","type":"exact"},{"name":"inviable vegetative cell during mitotic cell cycle","type":"related"},{"name":"lethal in vegetative cell","type":"exact"}],"termid":"FYPO:0001489","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYPO:0001489":null,"FYPO:0003976":null,"FYPO:0007701":null,"FYPO_EXT:0000001":null}}


id: SO:0001635
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant located within 5KB 5' of a gene.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"upstream_gene_variant","termid":"SO:0001631"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5KB_upstream_variant","secondary_identifiers":["http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp"],"synonyms":[{"name":"5kb upstream variant","type":"exact"},{"name":"Seattleseq:upstream-gene","type":"exact"},{"name":"upstream","type":"exact"}],"termid":"SO:0001635"}


id: GO:0019416
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the conversion of thiosulfate to tetrathionate, using cytochrome c as an electron acceptor.","definition_xrefs":["MetaCyc:THIOSULFOX-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"polythionate oxidation","termid":"GO:0019416"}


id: PBO:0041119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTB domain containing 2","termid":"PBO:0041119"}


id: PBO:0067302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 387, pseudogene","termid":"PBO:0067302"}


id: PBO:0074572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA host gene 28","termid":"PBO:0074572"}


id: PBO:0051357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 2/OR2-10 (pseudogene)","termid":"PBO:0051357"}


id: PBO:0029029
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_mitotic_spindle_pole_body_during_mitosis","termid":"PBO:0029029"}


id: GO:1903079
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any negative regulation of protein localization to cell tip that is involved in positive regulation of establishment of cell polarity regulating cell shape.","definition_xrefs":["GO_REF:0000060","PMID:24554432","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of protein localization to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape (obsolete GO:1903079)","synonyms":[{"name":"down regulation of protein localisation to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape","type":"exact"},{"name":"down regulation of protein localization to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape","type":"exact"},{"name":"down-regulation of protein localisation to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape","type":"exact"},{"name":"down-regulation of protein localization to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape","type":"exact"},{"name":"downregulation of protein localisation to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape","type":"exact"},{"name":"downregulation of protein localization to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape","type":"exact"},{"name":"inhibition of protein localisation to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape","type":"narrow"},{"name":"inhibition of protein localization to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape","type":"narrow"},{"name":"negative regulation of protein localisation to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape","type":"exact"},{"name":"negative regulation of protein localization to cell tip involved in positive regulation of establishment of cell polarity regulating cell shape","type":"exact"}],"termid":"GO:1903079"}


id: PBO:0042772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 78","termid":"PBO:0042772"}


id: PBO:0016516
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae MID1","termid":"PBO:0016516"}


id: PBO:0004866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine carboxypeptidase (predicted)","termid":"PBO:0004866"}


id: GO:0000459
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Exonucleolytic digestion of a pre-rRNA molecule in the process to generate a mature rRNA molecule.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete exonucleolytic trimming involved in rRNA processing (obsolete GO:0000459)","synonyms":[{"name":"exonucleolytic trimming during rRNA processing","type":"related"}],"termid":"GO:0000459"}


id: PBO:0030445
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_separation_after_cytokinesis","termid":"PBO:0030445"}


id: PR:000050452
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the rnc1 gene in Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein rnc1 (Schizosaccharomyces pombe)","pombase_gene_id":"SPCC757.09c","synonyms":[{"name":"RNA-binding protein that suppresses calcineurin deletion 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"SPCC757.09c","type":"related"},{"name":"Spom-rnc1","type":"exact"},{"name":"rnc1","type":"related"}],"termid":"PR:000050452"}


id: SO:0001160
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162).","definition_xrefs":["PMID:12537576:16827941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"},{"relation_name":"part_of","term_name":"RNApol_II_promoter","termid":"SO:0000170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DMv3_motif","synonyms":[{"name":"DMv3","type":"exact"},{"name":"DMv3 motif","type":"exact"},{"name":"KNNCAKCNCTRNY","type":"narrow"},{"name":"directional motif v3","type":"exact"},{"name":"promoter motif 7","type":"exact"}],"termid":"SO:0001160"}


id: GO:0036013
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The outer, i.e. cytoplasm-facing, lipid bilayer of the cyanelle envelope.","definition_xrefs":["GOC:aa"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid outer membrane","termid":"GO:0009527"},{"relation_name":"is_a","term_name":"cyanelle membrane","termid":"GO:0033113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"cyanelle outer membrane","termid":"GO:0036013"}


id: PBO:0029721
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_wall_galactomannan_level","termid":"PBO:0029721"}


id: PBO:0002684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylyl-sulfate kinase (predicted)","termid":"PBO:0002684"}


id: PBO:0076375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TAB2 antisense RNA 1","termid":"PBO:0076375"}


id: PBO:0050292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hepatocyte nuclear factor 4 gamma","termid":"PBO:0050292"}


id: FYPO:0000269
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to a microtubule-destabilizing substance. Cells stop growing (and may die) at a concentration of a microtubule-depolymerizing drug that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0005447","FYPO:0001985","FYPO:0002683","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to microtubule depolymerizing drugs","synonyms":[{"name":"hypersensitive to microtubule depolymerizing drugs","type":"exact"},{"name":"sensitive to microtubule depolymerizing drugs during mitotic cell cycle","type":"related"},{"name":"sensitive to microtubule depolymerizing drugs during vegetative growth","type":"exact"}],"termid":"FYPO:0000269"}


id: PBO:0038401
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-helper_property_(not_for_use_in_curation)","termid":"PBO:0038401"}


id: GO:0061424
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter and activates or increases the frequency, rate or extent of peroxisome organization.","definition_xrefs":["PMID:7500953","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of peroxisome organization by positive regulation of transcription from RNA polymerase II promoter (obsolete GO:0061424)","synonyms":[{"name":"positive regulation of peroxisome organisation by positive regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:0061424"}


id: GO:1900365
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of mRNA polyadenylation.","definition_xrefs":["GOC:TermGenie","GOC:se","PMID:15121841"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of mRNA polyadenylation (obsolete GO:1900365)","synonyms":[{"name":"activation of cleavage and polyadenylylation specificity factor activity","type":"narrow"},{"name":"activation of mRNA polyadenylation","type":"narrow"},{"name":"activation of mRNA polyadenylylation","type":"narrow"},{"name":"positive regulation of cleavage and polyadenylylation specificity factor activity","type":"narrow"},{"name":"positive regulation of mRNA polyadenylylation","type":"exact"}],"termid":"GO:1900365"}


id: GO:0017013
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of a flavin group to a protein amino acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein flavinylation","synonyms":[{"name":"protein amino acid flavinylation","type":"exact"}],"termid":"GO:0017013"}


id: GO:0100070
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates fatty acid biosynthetic process.","definition_xrefs":["GOC:cjm","GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete obsolete regulation of fatty acid biosynthetic process by transcription from RNA polymerase II promoter (obsolete GO:0100070)","termid":"GO:0100070"}


id: GO:0035230
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A long, thin, polarized cell projection that contains actin and can extend for distances many times the diameter of the cell. Cytonemes represent extensions of cell cytoplasm and typically have a diameter of approximately 0.2um.","definition_xrefs":["PMID:10367889","PMID:10675901"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection","termid":"GO:0120025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cytoneme","secondary_identifiers":["Wikipedia:Membrane_nanotube"],"synonyms":[{"name":"membrane nanotube","type":"exact"}],"termid":"GO:0035230"}


id: PBO:0018142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein carboxyl methyltransferase, implicated in DNA damage response","termid":"PBO:0018142"}


id: PBO:0082134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Actin filament binding protein that enhances actin ring formation; IQGAP family member required for assembly and contraction of the AMR, prior to cytokinesis; localizes to the contractile ring during anaphase in an Mlc1p-dependent manner, recruiting Myo1p and Hof1p to the site, and promoting cytokinetic core complex assembly; specifies bud-site selection, localizing axial markers Bud4p and Cdc12p; regulated by Cdc28p; relocalizes from the bud neck to the cytoplasm upon replication stress","termid":"PBO:0082134"}


id: PBO:0040376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase peripheral stalk subunit d pseudogene 4","termid":"PBO:0040376"}


id: GO:0035029
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of cells to leading edge cell fate during dorsal closure. Leading edge cells are the dorsal-most cells of the migrating epidermis.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leading edge cell fate commitment","termid":"GO:0035027"},{"relation_name":"part_of","term_name":"dorsal closure, leading edge cell differentiation","termid":"GO:0046663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dorsal closure, leading edge cell fate commitment","termid":"GO:0035029"}


id: PBO:0001344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Utp5 (predicted)","termid":"PBO:0001344"}


id: PBO:0082720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the Paf1p complex involved in transcription elongation; binds to and modulates the activity of RNA polymerases I and II; required for expression of a subset of genes, including cell cycle-regulated genes; involved in SER3 repression by helping to maintain SRG1 transcription-dependent nucleosome occupancy; homolog of human PD2/hPAF1","termid":"PBO:0082720"}


id: PBO:0066683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein, LIM domain interacting pseudogene 1","termid":"PBO:0066683"}


id: GO:0004287
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of Pro-Xaa > Ala-Xaa in oligopeptides.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete prolyl oligopeptidase activity (obsolete GO:0004287)","synonyms":[{"name":"endoprolylpeptidase activity","type":"related"},{"name":"post-proline cleaving enzyme activity","type":"related"},{"name":"post-proline endopeptidase activity","type":"related"},{"name":"proline endopeptidase activity","type":"related"},{"name":"proline-specific endopeptidase activity","type":"related"},{"name":"prolyl endopeptidase activity","type":"related"},{"name":"prolyl oligopeptidase activity","type":"exact"}],"termid":"GO:0004287"}


id: PBO:0069739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1020, pseudogene","termid":"PBO:0069739"}


id: GO:0106378
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-hydroxy-dATP + H2O = 2-hydroxy-dAMP + H+ + diphosphate.","definition_xrefs":["PMID:11139615","RHEA:31583"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside triphosphate diphosphatase activity","termid":"GO:0047429"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0047429"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0047429","GO:0003674"],"is_obsolete":false,"name":"2-hydroxy-dATP hydrolase activity","secondary_identifiers":["Reactome:R-HSA-2395818"],"termid":"GO:0106378"}


id: PBO:0063287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin gamma subfamily B, 1","termid":"PBO:0063287"}


id: PBO:0068157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 464","termid":"PBO:0068157"}


id: PBO:0077820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TP53RK divergent transcript","termid":"PBO:0077820"}


id: PBO:0027360
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_1,3-beta-D-glucan_synthase_activity_during_vegetative_growth","termid":"PBO:0027360"}


id: PBO:0082642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of mRNP complexes associated with polyribosomes; involved in localization of mRNAs to P bodies; implicated in secretion and nuclear segregation; multicopy suppressor of BFA (Brefeldin A) sensitivity","termid":"PBO:0082642"}


id: FYPO:0005680
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sites at which the protein Rad52 (also called Rad22) accumulates is normal (i.e. indistinguishable from wild type) during S phase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah","PMID:27151298"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal number of Rad52 foci during vegetative growth","termid":"FYPO:0007328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal number of Rad52 foci during mitotic S phase","synonyms":[{"name":"normal number of Rad22 foci during mitotic S phase","type":"exact"},{"name":"normal number of Rad52 foci during S phase during vegetative growth","type":"exact"},{"name":"normal number of Rad52 foci during S phase of mitotic cell cycle","type":"exact"}],"termid":"FYPO:0005680"}


id: FYPO:0002504
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the palmitoylation of one or more specific proteins, or of specific protein sites, does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein modification","termid":"FYPO:0002497"},{"relation_name":"is_a","term_name":"abnormal protein palmitoylation","termid":"FYPO:0002503"},{"relation_name":"is_a","term_name":"abolished biological process","termid":"FYPO:0005448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0002494","FYPO:0002274","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein palmitoylation","synonyms":[{"name":"protein palmitoylation abolished","type":"exact"},{"name":"protein palmitoylation absent","type":"exact"}],"termid":"FYPO:0002504"}


id: PBO:0087079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L41A; comprises only 25 amino acids; rpl41a rpl41b double null mutant is viable; homologous to mammalian ribosomal protein L41, no bacterial homolog; RPL41A has a paralog, RPL41B, that arose from the whole genome duplication","termid":"PBO:0087079"}


id: PBO:0071904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 42","termid":"PBO:0071904"}


id: PBO:0041368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 4 open reading frame 46","termid":"PBO:0041368"}


id: PR:000027621
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A transcription factor zip1 ubiquitinated form in Schizosaccharomyces pombe. Ubiquitinated by SCF(Pof1). Example: UniProtKB:Q10424-1, MOD:01148.","definition_xrefs":["PMID:15660136","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription factor zip1","termid":"PR:000027614"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor zip1 ubiquitinated form (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC25G10.03","synonyms":[{"name":"Spom-zip1/UbiqLys+","type":"exact"}],"termid":"PR:000027621"}


id: PR:O74400
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An RNA-binding protein 28 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03388"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized RNA-binding protein C4F6.14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4F6.14","secondary_identifiers":["UniProtKB:O74400"],"synonyms":[{"name":"Spom972h-RBM28","type":"exact"}],"termid":"PR:O74400"}


id: PBO:0057553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 668","termid":"PBO:0057553"}


id: PBO:0040740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCR pseudogene 6","termid":"PBO:0040740"}


id: GO:1901608
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of vesicle transport along microtubule.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organelle transport along microtubule","termid":"GO:1902513"},{"relation_name":"regulates","term_name":"vesicle transport along microtubule","termid":"GO:0047496"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of vesicle transport along microtubule","synonyms":[{"name":"regulation of microtubule-based vesicle localization","type":"exact"}],"termid":"GO:1901608"}


id: PBO:0060614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neutrophil cytosolic factor 1","termid":"PBO:0060614"}


id: GO:0006958
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complement activation","termid":"GO:0006956"},{"relation_name":"part_of","term_name":"humoral immune response mediated by circulating immunoglobulin","termid":"GO:0002455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"complement activation, classical pathway","synonyms":[{"name":"complement cascade, classical pathway","type":"exact"}],"termid":"GO:0006958"}


id: PBO:0059745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 19","termid":"PBO:0059745"}


id: GO:1900122
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor.","definition_xrefs":["GOC:signaling","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein binding","termid":"GO:0032092"},{"relation_name":"is_a","term_name":"regulation of receptor binding","termid":"GO:1900120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of receptor binding","synonyms":[{"name":"activation of receptor binding","type":"narrow"},{"name":"up regulation of receptor binding","type":"exact"},{"name":"upregulation of receptor binding","type":"exact"}],"termid":"GO:1900122"}


id: GO:2000716
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of maintenance of mitotic sister chromatid cohesion along the chromosome arms.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of maintenance of mitotic sister chromatid cohesion","termid":"GO:0034183"},{"relation_name":"is_a","term_name":"regulation of maintenance of mitotic sister chromatid cohesion, arms","termid":"GO:2000715"},{"relation_name":"negatively_regulates","term_name":"maintenance of mitotic sister chromatid cohesion, arms","termid":"GO:0071959"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"negative regulation of maintenance of mitotic sister chromatid cohesion, arms","synonyms":[{"name":"negative regulation of maintenance of mitotic sister chromatin cohesion along arms","type":"exact"},{"name":"negative regulation of maintenance of sister chromatin cohesion along arms at mitosis","type":"exact"}],"termid":"GO:2000716"}


id: FYPO:0004303
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which a phosphatase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal phosphatase activity","termid":"FYPO:0004302"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000707","FYPO:0001985","FYPO:0000652","FYPO:0000661"],"is_obsolete":false,"name":"abolished phosphatase activity","synonyms":[{"name":"phosphatase activity abolished","type":"exact"}],"termid":"FYPO:0004303"}


id: PBO:0077664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF receptor superfamily member 11a","termid":"PBO:0077664"}


id: GO:0008222
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete tumor antigen (obsolete GO:0008222)","synonyms":[{"name":"tumor antigen","type":"exact"}],"termid":"GO:0008222"}


id: PBO:0091308
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human RAB6A","termid":"PBO:0091308"}


id: PBO:0005123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone lysine methyltransferase Set1","termid":"PBO:0005123"}


id: PBO:0030370
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_regulation_of_mitotic_DNA_replication_initiation","termid":"PBO:0030370"}


id: PBO:0052641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 9","termid":"PBO:0052641"}


id: PBO:0062893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OXA1L divergent transcript","termid":"PBO:0062893"}


id: GO:0072718
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cisplatin stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cisplatin","termid":"GO:0072718"}


id: PBO:0087526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase; complex catalyzes the oxidation of isocitrate to alpha-ketoglutarate in the TCA cycle; phosphorylated","termid":"PBO:0087526"}


id: PATO:0000029
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000029 protein composition (obsolete PATO:0000029)","termid":"PATO:0000029"}


id: PBO:0002178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YjeF family pyridoxamine-phosphate oxidase (predicted)","termid":"PBO:0002178"}


id: GO:0106289
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of deadenylation-dependent decapping of nuclear-transcribed mRNA.","definition_xrefs":["PMID:32354837"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA","termid":"GO:0106288"},{"relation_name":"is_a","term_name":"negative regulation of mRNA catabolic process","termid":"GO:1902373"},{"relation_name":"negatively_regulates","term_name":"deadenylation-dependent decapping of nuclear-transcribed mRNA","termid":"GO:0000290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0016071","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA","termid":"GO:0106289"}


id: PBO:0061697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear protein 1, transcriptional regulator","termid":"PBO:0061697"}


id: GO:0035955
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of dipeptide transport by stopping, preventing or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:dgf","PMID:10850718","PMID:17005992","PMID:9427760"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter (obsolete GO:0035955)","synonyms":[{"name":"negative regulation of dipeptide transport by down regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of dipeptide transport by down-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of dipeptide transport by downregulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of dipeptide transport by inhibition of transcription from RNA polymerase II promoter","type":"narrow"},{"name":"negative regulation of dipeptide transport by negative regulation of transcription from Pol II promoter","type":"exact"}],"termid":"GO:0035955"}


id: GO:1901119
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving tobramycin.","definition_xrefs":["UniPathway:UPA00971","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoside metabolic process","termid":"GO:0016137"},{"relation_name":"is_a","term_name":"polyol metabolic process","termid":"GO:0019751"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"tobramycin metabolic process","synonyms":[{"name":"tobramycin metabolism","type":"exact"}],"termid":"GO:1901119"}


id: PBO:0091951
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human protein phosphatase B' delta","termid":"PBO:0091951"}


id: GO:0034592
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by the synaptic vesicle membrane.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle lumen","termid":"GO:0060205"},{"relation_name":"part_of","term_name":"synaptic vesicle","termid":"GO:0008021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0031410","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"synaptic vesicle lumen","termid":"GO:0034592"}


id: GO:0006820
data:
  {"annotated_genes":["SJAG_02463","SJAG_01168","SJAG_00048","SJAG_00547","SJAG_01183","SJAG_00671","SJAG_03401","SJAG_01941","SJAG_01033","SJAG_01973","SJAG_00877"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84606,90183,90729,96467,99906,100729,106237,107073,108831],"is_not":false,"summary":null,"term":"GO:0006820"},{"annotations":[101801,107768],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902476"},{"annotations":[96941,109851],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140116"},{"annotations":[64946,85664,61259],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098656"}]},"cv_name":"biological_process","definition":"The directed movement of a monoatomic anion, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Monatomic anions (also called simple anions) are negatively charged ions consisting of exactly one atom.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic ion transport","termid":"GO:0006811"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00048":null,"SJAG_00547":null,"SJAG_00671":null,"SJAG_00877":null,"SJAG_01033":null,"SJAG_01168":null,"SJAG_01183":null,"SJAG_01941":null,"SJAG_01973":null,"SJAG_02463":null,"SJAG_03401":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"monoatomic anion transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["GO:0006822"],"synonyms":[{"name":"anion transport","type":"broad"}],"termid":"GO:0006820","terms_by_termid":{"GO:0006820":null,"GO:0098656":null,"GO:0140116":null,"GO:1902476":null}}


id: PBO:0053151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lactate dehydrogenase B","termid":"PBO:0053151"}


id: GO:0120203
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by the membrane of a rod photoreceptor cell disc membrane.","definition_xrefs":["PMID:6771304","GOC:pde","PMID:26574505","GOC:krc","PMID:19501669"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle lumen","termid":"GO:0043233"},{"relation_name":"part_of","term_name":"rod photoreceptor outer segment","termid":"GO:0120200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"rod photoreceptor disc lumen","termid":"GO:0120203"}


id: CHEBI:16480
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nitric oxide","termid":"CHEBI:16480"}


id: PBO:0075976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal transducer and activator of transcription 2","termid":"PBO:0075976"}


id: PBO:0083952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gamma subunit of translational elongation factor eEF1B; stimulates the binding of aminoacyl-tRNA (AA-tRNA) to ribosomes by releasing eEF1A (Tef1p/Tef2p) from the ribosomal complex","termid":"PBO:0083952"}


id: PATO:0001680
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A volume quality inhering in a homogeneous substance containing 6.02 x 1023 atoms or molecules by virtue of the amount of 3-dimensional space it occupies.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Molar_volume"],"direct_ancestors":[{"relation_name":"is_a","term_name":"volume","termid":"PATO:0000918"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"molar volume","termid":"PATO:0001680"}


id: PBO:0046108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4E family member 1B","termid":"PBO:0046108"}


id: GO:0000299
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Integral to that fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes; require detergents, such as Triton X-100, to be released from membranes.","definition_xrefs":["PMID:10512869"],"gene_count":0,"genotype_count":0,"name":"obsolete integral to membrane of membrane fraction (obsolete GO:0000299)","synonyms":[{"name":"integral to membrane of membrane fraction","type":"exact"}],"termid":"GO:0000299"}


id: PBO:0052921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 19-4","termid":"PBO:0052921"}


id: PBO:0064883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 2 catalytic subunit beta pseudogene 1","termid":"PBO:0064883"}


id: PBO:0083561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps verified gene SLM3/YDL033C; YDL032W is not an essential gene","termid":"PBO:0083561"}


id: SO:0000106
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000106 non_capped_primary_transcript (obsolete SO:0000106)","termid":"SO:0000106"}


id: PR:Q9Y806
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC146.04 gene.","definition_xrefs":["UniProtKB:Q9Y806","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAD-linked sulfhydryl oxidase erv2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC146.04","synonyms":[{"name":"Spom972h-SPBC146.04","type":"exact"}],"termid":"PR:Q9Y806"}


id: PBO:0074764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 1B","termid":"PBO:0074764"}


id: PBO:0061424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NQO1 divergent transcript","termid":"PBO:0061424"}


id: GO:0141064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that contributes to the onset of de novo transcription from the zygotic genome as part of the maternal-to-zygote transition in gene expression. The zygote overcomes the silencing that has been established. The cause of this silencing could be due to several factors: chromatin modifications leading to repression, or lack of adequate transcription machinery.","definition_xrefs":["PMID:20808952","PMID:19204068"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of gene expression","termid":"GO:0010628"},{"relation_name":"part_of","term_name":"maternal-to-zygotic transition of gene expression","termid":"GO:0160021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"zygotic genome activation","synonyms":[{"name":"ZGA","type":"broad"}],"termid":"GO:0141064"}


id: GO:0015097
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of mercury (Hg2+) ions from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transition metal ion transmembrane transporter activity","termid":"GO:0046915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"mercury ion transmembrane transporter activity","secondary_identifiers":["RHEA:32815"],"termid":"GO:0015097"}


id: GO:1904535
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of telomeric loop disassembly.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:22579284","GOC:BHF_telomere","GOC:nc","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of telomere maintenance","termid":"GO:0032206"},{"relation_name":"is_a","term_name":"regulation of telomeric loop disassembly","termid":"GO:1904533"},{"relation_name":"positively_regulates","term_name":"telomeric loop disassembly","termid":"GO:0090657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0032200"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0032200"}],"interesting_parent_ids":["GO:0032200","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"positive regulation of telomeric loop disassembly","synonyms":[{"name":"activation of T loop disassembly","type":"narrow"},{"name":"activation of telomeric loop disassembly","type":"narrow"},{"name":"positive regulation of T loop disassembly","type":"exact"},{"name":"up regulation of T loop disassembly","type":"exact"},{"name":"up regulation of telomeric loop disassembly","type":"exact"},{"name":"up-regulation of T loop disassembly","type":"exact"},{"name":"up-regulation of telomeric loop disassembly","type":"exact"},{"name":"upregulation of T loop disassembly","type":"exact"},{"name":"upregulation of telomeric loop disassembly","type":"exact"}],"termid":"GO:1904535"}


id: GO:0008904
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + hygromycin B = 7''-O-phosphohygromycin B + ADP + 2 H+.","definition_xrefs":["EC:2.7.1.119","RHEA:23388"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoglycoside phosphotransferase activity","termid":"GO:0034071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016301"],"is_obsolete":false,"name":"hygromycin-B 7''-O-phosphotransferase activity","secondary_identifiers":["KEGG_REACTION:R03770","MetaCyc:HYGROMYCIN-B-KINASE-RXN"],"synonyms":[{"name":"APH(7'') activity","type":"related"},{"name":"ATP:hygromycin-B 7''-O-phosphotransferase activity","type":"related"},{"name":"destomic acid ring 7''-O-phosphotransferase activity","type":"exact"},{"name":"hygromycin B kinase activity","type":"broad"},{"name":"hygromycin B phosphotransferase activity","type":"broad"},{"name":"hygromycin-B kinase activity","type":"broad"}],"termid":"GO:0008904"}


id: FYPO:0001261
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mitotic cytokinesis is decreased during a cellular hyperosmotic response.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cytokinesis","termid":"FYPO:0000418"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0001985","FYPO:0005447","FYPO:0000032","FYPO:0001320"],"is_obsolete":false,"name":"decreased cytokinesis during cellular hyperosmotic response","synonyms":[{"name":"decreased cytokinesis during cellular hyperosmotic response during mitotic cell cycle","type":"related"},{"name":"decreased cytokinesis during cellular hyperosmotic response during vegetative growth","type":"exact"},{"name":"decreased mitotic cytokinesis during cellular hyperosmotic response","type":"exact"},{"name":"reduced cytokinesis during cellular hyperosmotic response","type":"exact"}],"termid":"FYPO:0001261"}


id: PBO:0070584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 50","termid":"PBO:0070584"}


id: PBO:0063607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"platelet factor 4 variant 1","termid":"PBO:0063607"}


id: PBO:0039312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alkB homolog 6","termid":"PBO:0039312"}


id: PBO:0011956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase allele types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleotide_mutation","termid":"PBO:0011956"}


id: PR:Q9UT44
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A gamma-glutamyl phosphate reductase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00398","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-glutamyl phosphate reductase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC821.11","secondary_identifiers":["UniProtKB:Q9UT44"],"synonyms":[{"name":"GPR (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GSA dehydrogenase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-proA","type":"exact"},{"name":"glutamate-5-semialdehyde dehydrogenase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"glutamyl-gamma-semialdehyde dehydrogenase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UT44"}


id: PR:Q9HDW1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12586:SF0","PRO:DNx","OMA:SCHPO03262"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP18G5.02","secondary_identifiers":["UniProtKB:Q9HDW1"],"synonyms":[{"name":"PGP synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PGS1","type":"exact"},{"name":"phosphatidylglycerophosphate synthase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9HDW1"}


id: GO:0106319
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (4R)-limonene + NADH + H+ + O2 = NAD+ + H2O + (4R)-limonene-1,2-epoxide.","definition_xrefs":["RHEA:26093"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(R)-limonene 1,2-monooxygenase activity","termid":"GO:0018635"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"(R)-limonene 1,2-monooxygenase NADH activity","secondary_identifiers":["EC:1.14.13.107"],"termid":"GO:0106319"}


id: GO:0002039
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to one of the p53 family of proteins.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"p53 binding","termid":"GO:0002039"}


id: PBO:0083229
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps YBR223C; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching","termid":"PBO:0083229"}


id: PATO:0001934
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being perfectly circular.","definition_xrefs":["ISBN:0881923214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"circular","termid":"PATO:0000411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orbicular","termid":"PATO:0001934"}


id: GO:0150147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of a cell-cell junction into its constituent components.","definition_xrefs":["GOC:aruk","PMID:25490267"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell junction organization","termid":"GO:0045216"},{"relation_name":"is_a","term_name":"cell junction disassembly","termid":"GO:0150146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell-cell junction disassembly","termid":"GO:0150147"}


id: PBO:0086623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; similar to the petunia WD repeat protein an11; overexpression causes a cell cycle delay or arrest","termid":"PBO:0086623"}


id: SO:0000886
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Recoded mRNA where a block of nucleotides is not translated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"recoded","termid":"SO:0000881"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recoded_by_translational_bypass","synonyms":[{"name":"recoded by translational bypass","type":"exact"}],"termid":"SO:0000886"}


id: GO:0002465
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Tolerance induction in the peripheral lymphoid tissues: blood, lymph nodes, spleen, and mucosal-associated lymphoid tissues.","definition_xrefs":["GO_REF:0000022","ISBN:0781735149","GOC:jal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tolerance induction dependent upon immune response","termid":"GO:0002461"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peripheral tolerance induction","termid":"GO:0002465"}


id: GO:0014725
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of extraocular skeletal muscle development. Extraocular skeletal muscle development is the process whose specific outcome is the progression of the extraocular skeletal muscle over time, from its formation to the mature structure. The extraocular muscle is derived from cranial mesoderm and controls eye movements. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle organ development","termid":"GO:0048634"},{"relation_name":"is_a","term_name":"regulation of skeletal muscle tissue development","termid":"GO:0048641"},{"relation_name":"regulates","term_name":"extraocular skeletal muscle development","termid":"GO:0002074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of extraocular skeletal muscle development","termid":"GO:0014725"}


id: GO:0032030
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a light chain of a myosin I complex.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myosin I binding","termid":"GO:0017024"},{"relation_name":"is_a","term_name":"myosin light chain binding","termid":"GO:0032027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0008092","GO:0003674"],"is_obsolete":false,"name":"myosin I light chain binding","termid":"GO:0032030"}


id: PBO:0012562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteasome complex subunit alpha 5, Pup2 (predicted)","termid":"PBO:0012562"}


id: PBO:0004647
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.1.2.-","termid":"PBO:0004647"}


id: GO:0022618
data:
  {"annotated_genes":["SJAG_03798","SJAG_00859","SJAG_02455","SJAG_02304","SJAG_02759","SJAG_05248","SJAG_03080","SJAG_00722","SJAG_04744","SJAG_02263","SJAG_01200","SJAG_00058","SJAG_04911","SJAG_00147","SJAG_03466","SJAG_04492","SJAG_04304","SJAG_02915","SJAG_02628","SJAG_00572","SJAG_05979","SJAG_01568","SJAG_03214","SJAG_02295","SJAG_05223","SJAG_04940","SJAG_02376","SJAG_04998","SJAG_01548","SJAG_04108","SJAG_01440","SJAG_04214","SJAG_05003","SJAG_03070","SJAG_01811","SJAG_00498","SJAG_04891","SJAG_01870","SJAG_03617","SJAG_04669","SJAG_00323","SJAG_03773","SJAG_02868","SJAG_04847","SJAG_02185","SJAG_01339","SJAG_02164","SJAG_02335","SJAG_00752","SJAG_01214","SJAG_03279","SJAG_02952","SJAG_01654","SJAG_02058","SJAG_02508","SJAG_00949","SJAG_02754","SJAG_02427","SJAG_03496","SJAG_00841","SJAG_02558","SJAG_04180","SJAG_01169","SJAG_01606","SJAG_03995","SJAG_04900","SJAG_02390","SJAG_00474","SJAG_02081","SJAG_00689","SJAG_00523","SJAG_00882","SJAG_01217","SJAG_03894","SJAG_04586","SJAG_03472","SJAG_03424","SJAG_04746","SJAG_04004","SJAG_04599","SJAG_02436","SJAG_04395","SJAG_00313","SJAG_01152","SJAG_03012","SJAG_04898","SJAG_02830","SJAG_01487","SJAG_01547","SJAG_04497","SJAG_00087","SJAG_03458","SJAG_00912","SJAG_01315","SJAG_02340","SJAG_01296","SJAG_02469","SJAG_03983","SJAG_02479","SJAG_04981","SJAG_01761","SJAG_01454","SJAG_04992","SJAG_04093","SJAG_04538","SJAG_00513","SJAG_04529","SJAG_00278","SJAG_01839","SJAG_02477","SJAG_00643","SJAG_05679","SJAG_03323","SJAG_05009","SJAG_01504","SJAG_03125","SJAG_02843","SJAG_02803","SJAG_02184","SJAG_00466","SJAG_01567","SJAG_01420","SJAG_01301","SJAG_00911","SJAG_02573","SJAG_02279","SJAG_01327","SJAG_03954","SJAG_00322","SJAG_01161","SJAG_01008","SJAG_01819","SJAG_04230","SJAG_03036","SJAG_04163","SJAG_03666","SJAG_01122","SJAG_04355","SJAG_02840","SJAG_01015","SJAG_04066","SJAG_00225","SJAG_04176","SJAG_00662","SJAG_03469","SJAG_02535","SJAG_05231","SJAG_03551","SJAG_05240","SJAG_04524","SJAG_05195","SJAG_02995","SJAG_02749","SJAG_00414","SJAG_04534","SJAG_03147"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92329,92330,107218,107219],"is_not":false,"summary":null,"term":"GO:0022618"},{"annotations":[88946,95303,105125,112258,102105,94112,99629,109005,89338,96526,98637,107546,108249,112745,88530,114943,96853,103547,111862,111863,85795,106921,96710],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:1902626"},{"annotations":[108348,113731,97808,93621,100172,94081],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000492"},{"annotations":[104718,108782],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000493"},{"annotations":[113892],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0000354"},{"annotations":[83848,98638,106850,100251,98022,95581,98021,112669,101316,88239,100909,94113,106851,93205,111444,112668,100173,90967,100400,111445],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180023"},{"annotations":[106814,92991,95055,92005,107445,90920,93868,86112,101422,96220,101714,93928],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001732"},{"annotations":[92221,92719,100177,104884,101518,114110],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001731"},{"annotations":[101875,102506,96809],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0000349"},{"annotations":[105667,100956,104981,110460],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0000350"},{"annotations":[104495],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902775"},{"annotations":[97368,104982],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0000389"},{"annotations":[91745,101978,109385,87705,93971,90143,91060,98666,98827,106760,108475,111340,106770,106179,106745,91317],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0000395"},{"annotations":[99332],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0000348"},{"annotations":[103051,73365],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0006376"},{"annotations":[111737,113836,93615,114239,111804,98604,99796,93616,89500,101657,97328,98603],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000027"},{"annotations":[107721,108184,92704,99983,96588,102914,107517,107720,93554,101777,97847,97848,107722,107886,102915,114660,107518,112528,97849,90890,86049,73923,93555,101776],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000028"},{"annotations":[110405],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904802"},{"annotations":[109182,103737],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0034462"},{"annotations":[89511,101595,91475,74889,107244,97861,99334,107037,104882],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000245"},{"annotations":[94153,96751],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000393"},{"annotations":[101980,92118,109386,105102,111210,97423,98668,106181,91319,85643,100658,92979,104652,87789,106747,91747],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000387"},{"annotations":[98308,101596,94154,108357,93543,110486,107815,102661],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000244"},{"annotations":[96752],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0000388"},{"annotations":[86799,104047,86800],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904868"},{"annotations":[104653,91966,111033,111964,112504,102449],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905323"},{"annotations":[108558,109961,102872],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903241"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of proteins and RNA molecules to form a ribonucleoprotein complex.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"is_a","term_name":"protein-RNA complex organization","termid":"GO:0071826"},{"relation_name":"part_of","term_name":"ribonucleoprotein complex 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complex assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"RNA-protein complex assembly","type":"exact"},{"name":"RNP complex assembly","type":"exact"},{"name":"ribonucleoprotein complex assembly","type":"exact"}],"termid":"GO:0022618","terms_by_termid":{"GO:0000027":null,"GO:0000028":null,"GO:0000244":null,"GO:0000245":null,"GO:0000348":null,"GO:0000349":null,"GO:0000350":null,"GO:0000354":null,"GO:0000387":null,"GO:0000388":null,"GO:0000389":null,"GO:0000393":null,"GO:0000395":null,"GO:0000492":null,"GO:0000493":null,"GO:0001731":null,"GO:0001732":null,"GO:0006376":null,"GO:0022618":null,"GO:0034462":null,"GO:0180023":null,"GO:1902626":null,"GO:1902775":null,"GO:1903241":null,"GO:1904802":null,"GO:1904868":null,"GO:1905323":null}}


id: GO:0015060
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete green-sensitive opsin (obsolete GO:0015060)","synonyms":[{"name":"green-sensitive opsin","type":"exact"}],"termid":"GO:0015060"}


id: GO:2000937
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cellotriose catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of catabolic process","termid":"GO:0009895"},{"relation_name":"is_a","term_name":"negative regulation of cellotriose metabolic process","termid":"GO:2000934"},{"relation_name":"is_a","term_name":"regulation of cellotriose catabolic process","termid":"GO:2000936"},{"relation_name":"negatively_regulates","term_name":"cellotriose catabolic process","termid":"GO:2000894"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"negative regulation of cellotriose catabolic process","synonyms":[{"name":"negative regulation of cellotriose catabolism","type":"exact"}],"termid":"GO:2000937"}


id: GO:0007432
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Determination of where the salivary gland forms, the total number of salivary gland cells and how many cells are allocated to each of the specialised cell types within the salivary gland.","definition_xrefs":["PMID:11598957"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formation of animal organ boundary","termid":"GO:0010160"},{"relation_name":"part_of","term_name":"salivary gland development","termid":"GO:0007431"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"salivary gland boundary specification","synonyms":[{"name":"salivary gland determination","type":"exact"}],"termid":"GO:0007432"}


id: PATO:0000203
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000203 short term memory (obsolete PATO:0000203)","termid":"PATO:0000203"}


id: GO:0043035
data:
  {"annotated_genes":["SJAG_00585","SJAG_02815","SJAG_03354","SJAG_01827"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95699,103035,105252,111454],"is_not":false,"summary":null,"term":"GO:0043035"}]},"cv_name":"molecular_function","definition":"Binding to a chromatin insulator sequence, a DNA sequence that prevents enhancer-mediated activation or repression of transcription.","definition_xrefs":["PMID:12783795","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromatin DNA binding","termid":"GO:0031490"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00585":null,"SJAG_01827":null,"SJAG_02815":null,"SJAG_03354":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0003677","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"chromatin insulator sequence binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0043035","terms_by_termid":{"GO:0043035":null}}


id: GO:0010995
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which free ubiquitin chains, compounds composed of a large number of ubiquitin monomers, are broken down.","definition_xrefs":["GOC:dph","GOC:BHF","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein depolymerization","termid":"GO:0051261"},{"relation_name":"part_of","term_name":"ubiquitin recycling","termid":"GO:0010992"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"free ubiquitin chain depolymerization","termid":"GO:0010995"}


id: GO:0097664
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An SCF ubiquitin ligase complex in which the F-box protein is Grr1 in S. cerevisiae (Pof2 in S. pombe).","definition_xrefs":["PMID:10213692","PMID:15147268","GOC:vw","GOC:jd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SCF ubiquitin ligase complex","termid":"GO:0019005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"SCF-Grr1/Pof2 ubiquitin ligase complex","termid":"GO:0097664"}


id: PBO:0053496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 474","termid":"PBO:0053496"}


id: GO:0030870
data:
  {"annotated_genes":["SJAG_00640","SJAG_01677","SJAG_05373"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[84728,85335,107828],"is_not":false,"summary":null,"term":"GO:0030870"}]},"cv_name":"cellular_component","definition":"Trimeric protein complex that possesses endonuclease activity; involved in meiotic recombination, DNA repair and checkpoint signaling. In Saccharomyces cerevisiae, the complex comprises Mre11p, Rad50p, and Xrs2p; complexes identified in other species generally contain proteins orthologous to the Saccharomyces cerevisiae proteins.","definition_xrefs":["PMID:17674145","PMID:11988766","GOC:vw","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00640":null,"SJAG_01677":null,"SJAG_05373":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"Mre11 complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"MRN complex","type":"exact"},{"name":"MRX complex","type":"exact"},{"name":"RAD50-MRE11-NBN complex","type":"exact"},{"name":"RMX complex","type":"exact"},{"name":"Rad50 complex","type":"exact"},{"name":"Rad50-Rad32-Nbs1 complex","type":"exact"}],"termid":"GO:0030870","terms_by_termid":{"GO:0030870":null}}


id: PBO:0088591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lys48-specific deubiquitinase Ubp14","termid":"PBO:0088591"}


id: GO:0102440
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3',4',5'-trimethylmyricetin + S-adenosyl-L-methionine = 3,3',4',5'-tetramethylmyricetin + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["EC:2.1.1.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016741","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"3',4',5'-trimethylmyricetin 3-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-13918"],"termid":"GO:0102440"}


id: PBO:0041423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C8orf34 antisense RNA 1","termid":"PBO:0041423"}


id: PBO:0071762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein lateral stalk subunit P1 pseudogene 9","termid":"PBO:0071762"}


id: GO:0103058
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: kaempferol 3-O-glucoside + UDP-L-rhamnose = kaempferol-3-glucoside-7-rhamnoside + UDP.","definition_xrefs":["EC:2.4.1.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"kaempferol 3-glucoside 7-O-rhamnosyltransferase activity","secondary_identifiers":["MetaCyc:RXN1F-443"],"termid":"GO:0103058"}


id: FYPO:0001064
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of glycine into the cell occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal glycine import","termid":"FYPO:0001063"},{"relation_name":"is_a","term_name":"decreased amino acid import during vegetative growth","termid":"FYPO:0001360"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased glycine import","synonyms":[{"name":"decreased glycine import across plasma membrane","type":"exact"},{"name":"decreased glycine import during mitotic cell cycle","type":"related"},{"name":"decreased glycine import during vegetative growth","type":"exact"},{"name":"decreased glycine import into cell","type":"exact"},{"name":"decreased glycine uptake","type":"exact"},{"name":"reduced glycine import","type":"exact"}],"termid":"FYPO:0001064"}


id: FYPO:0009075
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cell growth is decreased relative to normal in a medium containing fructose as the carbon source.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased vegetative cell population growth","termid":"FYPO:0001355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002060","FYPO:0001985","FYPO:0002058","FYPO:0000003","FYPO:0002057","FYPO:0000139","FYPO:0005447"],"is_obsolete":false,"name":"decreased cell population growth on fructose carbon source","synonyms":[{"name":"decreased growth on fructose carbon source","type":"broad"},{"name":"decreased vegetative cell growth on fructose carbon source","type":"exact"},{"name":"reduced cell growth on fructose carbon source","type":"related"},{"name":"slow cell growth on fructose carbon source","type":"narrow"}],"termid":"FYPO:0009075"}


id: PBO:0052447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kruppel like factor 2 pseudogene 4","termid":"PBO:0052447"}


id: PBO:0051378
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 5-2","termid":"PBO:0051378"}


id: GO:0038095
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the binding of the Fc portion of immunoglobulin E (IgE) to an Fc-epsilon receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region.","definition_xrefs":["GOC:phg","PMID:12413516","PMID:15048725"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Fc receptor signaling pathway","termid":"GO:0038093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"Fc-epsilon receptor signaling pathway","synonyms":[{"name":"Fc-epsilon receptor signalling pathway","type":"exact"}],"termid":"GO:0038095"}


id: PBO:0086527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved across S. cerevisiae strains; YFL019C is not an essential gene","termid":"PBO:0086527"}


id: GO:0141033
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change that impairs the structure or function of the host actin cytoskeleton by polymerizing the host filamentous actin. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:18331467","PMID:25293534"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host actin cytoskeleton","termid":"GO:0141027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host actin cytoskeleton via actin polymerization","synonyms":[{"name":"perturbation by symbiont of host actin cytoskeleton via actin polymerization","type":"exact"}],"termid":"GO:0141033"}


id: SO:0000516
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non functional descendant of a transcript, part of a pseudogene.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pseudogenic_region","termid":"SO:0000462"},{"relation_name":"non_functional_homolog_of","term_name":"transcript","termid":"SO:0000673"},{"relation_name":"part_of","term_name":"pseudogene","termid":"SO:0000336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogenic_transcript","synonyms":[{"name":"INSDC_feature:misc_RNA","type":"broad"},{"name":"INSDC_qualifier:pseudo","type":"exact"},{"name":"pseudogenic transcript","type":"exact"}],"termid":"SO:0000516"}


id: GO:0140372
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by the addition of one or more ubiquitin groups.","definition_xrefs":["PMID:31468675","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3 ubiquitination (obsolete GO:0140372)","synonyms":[{"name":"histone H3 ubiquitylation","type":"exact"}],"termid":"GO:0140372"}


id: PBO:0087891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional repressor that regulates middle-sporulation genes; required for mitotic repression of middle sporulation-specific genes; also acts as general replication initiation factor; involved in telomere maintenance, chromatin silencing; regulated by pachytene checkpoint","termid":"PBO:0087891"}


id: FYECO:0000099
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Recovery from nitrogen starvation: cells are first grown in minimal medium containing no nitrogen for 72h-7days. This medium is then replaced with nitrogen containing rich medium and cells are allowed to grow for 4-7 days.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrogen starvation and recovery","termid":"FYECO:0000110"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"72h-7days nitrogen starvation followed by 4-7 days recovery in rich medium","termid":"FYECO:0000099"}


id: PBO:0086574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; contains a BTB/POZ domain which generally function in protein interactions; deletion slightly improved competitive fitness in rich media; GFP-tagged protein is localized to the cytoplasm","termid":"PBO:0086574"}


id: PBO:0004976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogene malic enzyme (predicted)","termid":"PBO:0004976"}


id: PBO:0050534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"15-hydroxyprostaglandin dehydrogenase","termid":"PBO:0050534"}


id: PBO:0002428
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.5.3.4","termid":"PBO:0002428"}


id: GO:0043505
data:
  {"annotated_genes":["SJAG_00307"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[98177],"is_not":false,"summary":null,"term":"GO:0043505"}]},"cv_name":"cellular_component","definition":"A form of nucleosome located only at the centromere, in which the histone H3 is replaced by the variant form CENP-A (sometimes known as CenH3).","definition_xrefs":["GOC:go_curators","PMID:15175412","PMID:16183641"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleosome","termid":"GO:0000786"},{"relation_name":"part_of","term_name":"CENP-A containing chromatin","termid":"GO:0061638"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00307":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005694","GO:0005575"],"is_obsolete":false,"name":"CENP-A containing nucleosome","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"CENP-S-T-W-X","type":"exact"},{"name":"CNP-T-W-S-X complex","type":"exact"},{"name":"CenH3 containing nucleosome","type":"exact"},{"name":"centromere specific nucleosome","type":"related"},{"name":"centromere-specific nucleosome","type":"related"},{"name":"centromeric nucleosome","type":"related"}],"termid":"GO:0043505","terms_by_termid":{"GO:0043505":null}}


id: GO:0106264
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: GTP + L-seryl-[protein] = GDP + H+ + O-phospho-L-seryl-[protein].","definition_xrefs":["RHEA:64020","GOC:sp","PMID:32322062"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein kinase activity","termid":"GO:0004672"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016740","GO:0016301","GO:0003824","GO:0003674","GO:0140096","GO:0004672"],"is_obsolete":false,"name":"protein serine kinase activity (using GTP as donor)","termid":"GO:0106264"}


id: PBO:0054994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2409","termid":"PBO:0054994"}


id: FYPO:0003979
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the mitotic cell cycle is arrested when cells have condensed chromosomes, a single, normally located septum, and 1C DNA content in each nucleus, under conditions where arrest does not normally occur.","definition_xrefs":["PomBase:mah","PMID:8313905","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle arrest with condensed chromosomes, septated cell","termid":"FYPO:0004719"},{"relation_name":"output_of","term_name":"abnormal exit from mitosis","termid":"FYPO:0003972"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000337"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000337","FYPO:0000002","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"abnormal mitotic cell cycle arrest with condensed chromosomes, septated cell with 1C DNA content per nucleus","synonyms":[{"name":"abnormal cell cycle arrest with condensed chromosomes, septated cell with 1C DNA content per nucleus during mitotic cell cycle","type":"exact"},{"name":"abnormal mitotic cell cycle arrest with condensed chromosomes, septated cell with 1C DNA content per nucleus during vegetative growth","type":"exact"},{"name":"abnormal mitotic cell cycle arrest with condensed chromosomes, septated cell with 1C nuclei","type":"exact"}],"termid":"FYPO:0003979"}


id: PBO:0049623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 26","termid":"PBO:0049623"}


id: FYPO:0004011
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of degradation of one or more ribosomal proteins is increased.","definition_xrefs":["PMID:2839305","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein degradation during vegetative growth","termid":"FYPO:0000847"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0002274","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased degradation of ribosomal proteins during vegetative growth","synonyms":[{"name":"increased degradation of ribosomal proteins during mitotic cell cycle","type":"related"},{"name":"increased ribosomal protein breakdown during vegetative growth","type":"exact"},{"name":"increased ribosomal protein catabolic process during vegetative growth","type":"exact"},{"name":"increased ribosomal protein catabolism during vegetative growth","type":"exact"},{"name":"increased ribosomal protein degradation cycle during vegetative growth","type":"related"}],"termid":"FYPO:0004011"}


id: PBO:0090795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCAAT-binding factor complex repressor Php4","termid":"PBO:0090795"}


id: PATO:0002162
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch of an increased apical height.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"arched","termid":"PATO:0001594"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high-arched","termid":"PATO:0002162"}


id: PBO:0049919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hes related family bHLH transcription factor with YRPW motif like","termid":"PBO:0049919"}


id: GO:0047150
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-homocysteine + glycine betaine = N,N-dimethylglycine + L-methionine.","definition_xrefs":["RHEA:22336","EC:2.1.1.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-methyltransferase activity","termid":"GO:0008172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016741"],"is_obsolete":false,"name":"betaine-homocysteine S-methyltransferase activity","secondary_identifiers":["Reactome:R-HSA-1614654","KEGG_REACTION:R02821","MetaCyc:2.1.1.5-RXN"],"synonyms":[{"name":"betaine-homocysteine methyltransferase activity","type":"related"},{"name":"betaine-homocysteine transmethylase activity","type":"related"},{"name":"trimethylammonioacetate:L-homocysteine S-methyltransferase activity","type":"related"}],"termid":"GO:0047150"}


id: PBO:0091450
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"was previously incorrectly named as mtx1 with MTX1 human ortholog","termid":"PBO:0091450"}


id: GO:0008824
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cyanate + H2O = carbamate.","definition_xrefs":["RHEA:11120","EC:4.2.1.104"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-nitrogen lyase activity","termid":"GO:0016840"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"cyanate hydratase activity","secondary_identifiers":["UM-BBD_reactionID:r0608","MetaCyc:R524-RXN"],"synonyms":[{"name":"carbamate hydro-lyase activity","type":"related"},{"name":"cyanase activity","type":"exact"},{"name":"cyanate C-N-lyase activity","type":"related"},{"name":"cyanate aminohydrolase activity","type":"related"},{"name":"cyanate hydrolase activity","type":"related"},{"name":"cyanate lyase activity","type":"exact"}],"termid":"GO:0008824"}


id: PBO:0085730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in the regulation of endocytosis; transiently recruited to actin cortical patches in a SLA1-dependent manner after late coat component assembly; GFP-fusion protein localizes to the periphery, cytoplasm, bud, and bud neck","termid":"PBO:0085730"}


id: PATO:0001360
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's having thin filamentous extensions at its edge.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"filamentous","termid":"PATO:0001360"}


id: PBO:0082962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic protein of unknown function; induced in response to mycotoxin patulin; ubiquitinated protein similar to the human ring finger motif protein RNF10; predicted to be involved in repair of alkylated DNA due to interaction with MAG1","termid":"PBO:0082962"}


id: GO:0102550
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + 2-methyl-6-geranylgeranyl-1,4-benzoquinol = S-adenosyl-L-homocysteine + 2,3-dimethyl-6-geranylgeranyl-1,4-benzoquinol + H+.","definition_xrefs":["GOC:pz","EC:2.1.1.295"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016741","GO:0003824"],"is_obsolete":false,"name":"2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity","secondary_identifiers":["RHEA:38007","MetaCyc:RXN-14917"],"termid":"GO:0102550"}


id: PBO:0085977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; proposed role as a basic amino acid permease based on phylogeny; GFP-fusion protein localizes to vacuolar membrane; physical interaction with Atg27p suggests a possible role in autophagy; non-essential gene","termid":"PBO:0085977"}


id: GO:0075321
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that leads to the development of an oomycete sporangium, a single-celled or many-celled structure that germinates directly to form an infection hypha or differentiates, through specialized cleavage vesicles, into between 10 and 30 zoospores, which are laterally flagellated.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asexual sporulation","termid":"GO:0030436"},{"relation_name":"is_a","term_name":"sporangium development","termid":"GO:0043582"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oomycete sporangium development","termid":"GO:0075321"}


id: PBO:0016893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin-dependent kinase/ cyclin-dependent kinase activating kinase Csk1","termid":"PBO:0016893"}


id: PBO:0075044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-7","termid":"PBO:0075044"}


id: FYECO:0000358
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in rich medium containing yeast extract, galactose, glucose, and other components. The concentrations of galactose and glucose are typically around 2-3% each.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping rich medium","termid":"FYECO:0000080"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YES + galactose","synonyms":[{"name":"rich medium with glucose and galactose","type":"related"}],"termid":"FYECO:0000358"}


id: FYPO:0000856
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleosome positioning is normal (i.e. indistinguishable from wild type). Nucleosome positioning is the ordering of successions of nucleosomes into regular arrays so that nucleosomes are positioned at defined distances from one another.","definition_xrefs":["GO:0016584","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal nucleosome positioning","synonyms":[{"name":"normal nucleosome occupancy","type":"related"},{"name":"normal nucleosome positioning during mitotic cell cycle","type":"related"},{"name":"normal nucleosome positioning during vegetative growth","type":"exact"},{"name":"normal nucleosome spacing","type":"exact"}],"termid":"FYPO:0000856"}


id: FYECO:0000051
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which linolenic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ fatty acid","termid":"FYECO:0000042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ linolenic acid","termid":"FYECO:0000051"}


id: GO:0071551
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a RIP homotypic interaction motif (RHIM) of a protein. The RHIM is a 16-amino-acid motif found in some members, including RIP3, of a family of related kinases.","definition_xrefs":["PMID:11734559","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"RIP homotypic interaction motif binding","synonyms":[{"name":"RHIM binding","type":"exact"}],"termid":"GO:0071551"}


id: GO:0008558
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalyses the reaction: ATP + H2O + guanine(out) = ADP + phosphate + guanine(in).","definition_xrefs":["RHEA:20832"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanine transmembrane transporter activity","termid":"GO:0015208"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"ABC-type guanine transporter activity","secondary_identifiers":["MetaCyc:3.6.3.37-RXN","EC:7.6.2.6"],"synonyms":[{"name":"ATP-dependent guanine transmembrane transporter activity","type":"related"},{"name":"ATPase-coupled guanine transmembrane transporter activity","type":"related"},{"name":"guanine ABC transporter","type":"exact"},{"name":"guanine-transporting ATPase activity","type":"related"}],"termid":"GO:0008558"}


id: FYPO:0007447
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which autophagic degradation of the endoplasmic reticulum does not occur during a cellular response to endoplasmic reticulum stress.","definition_xrefs":["PomBase:mah","PMID:32735772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished macroautophagy","termid":"FYPO:0000380"},{"relation_name":"is_a","term_name":"abnormal reticulophagy during vegetative growth","termid":"FYPO:0007445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished reticulophagy during cellular response to endoplasmic reticulum stress","synonyms":[{"name":"abolished ER autophagy during cellular response to endoplasmic reticulum stress","type":"exact"},{"name":"abolished ER degradation","type":"related"},{"name":"abolished ER-phagy during cellular response to endoplasmic reticulum stress","type":"exact"},{"name":"abolished endoplasmic reticulum autophagy during cellular response to endoplasmic reticulum stress","type":"exact"},{"name":"abolished reticulophagy during cellular response to ER stress","type":"exact"},{"name":"abolished reticulophagy during cellular response to endoplasmic reticulum stress during mitotic cell cycle","type":"related"},{"name":"abolished reticulophagy during cellular response to endoplasmic reticulum stress during vegetative growth","type":"exact"},{"name":"reticulophagy abolished during cellular response to endoplasmic reticulum stress","type":"exact"}],"termid":"FYPO:0007447"}


id: PBO:0046949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 74 member A3","termid":"PBO:0046949"}


id: GO:0005721
data:
  {"annotated_genes":["SJAG_01067","SJAG_04253","SJAG_01579","SJAG_03989","SJAG_02119","SJAG_00934","SJAG_01332","SJAG_04039","SJAG_04030","SJAG_02846","SJAG_03789","SJAG_03543","SJAG_03916","SJAG_02927","SJAG_01601","SJAG_04412","SJAG_01075","SJAG_00678","SJAG_00302","SJAG_03356","SJAG_01873","SJAG_04574","SJAG_03042","SJAG_02866","SJAG_02778","SJAG_04670","SJAG_02773","SJAG_03350","SJAG_04186","SJAG_03926","SJAG_03844","SJAG_01540","SJAG_03635","SJAG_03982","SJAG_03942","SJAG_01745","SJAG_04141","SJAG_02990","SJAG_03689","SJAG_05329","SJAG_04623","SJAG_03418","SJAG_04508","SJAG_00335","SJAG_00414","SJAG_05372","SJAG_00756","SJAG_02409","SJAG_03664"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[83839,84064,85533,86217,87078,87414,87482,87550,87926,88211,88519,89968,90225,92864,95085,95244,95679,95727,97951,98118,98119,98120,98896,100208,100303,102401,102650,103438,103934,104271,106596,107315,108209,108314,108707,108708,108709,109164,109335,109395,109779,110380,110518,110662,112075,112950,113756,113766,113812,114607,114740,114859],"is_not":false,"summary":null,"term":"GO:0005721"}]},"cv_name":"cellular_component","definition":"Heterochromatin that is located adjacent to the CENP-A rich centromere 'central core' and characterized by methylated H3 histone at lysine 9 (H3K9me2/H3K9me3).","definition_xrefs":["PMID:21437270","PMID:22729156","PMID:9413993","PMID:20206496","PMID:12019236"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterochromatin","termid":"GO:0000792"},{"relation_name":"part_of","term_name":"chromosome, centromeric region","termid":"GO:0000775"}],"gene_count":49,"genes_by_uniquename":{"SJAG_00302":null,"SJAG_00335":null,"SJAG_00414":null,"SJAG_00678":null,"SJAG_00756":null,"SJAG_00934":null,"SJAG_01067":null,"SJAG_01075":null,"SJAG_01332":null,"SJAG_01540":null,"SJAG_01579":null,"SJAG_01601":null,"SJAG_01745":null,"SJAG_01873":null,"SJAG_02119":null,"SJAG_02409":null,"SJAG_02773":null,"SJAG_02778":null,"SJAG_02846":null,"SJAG_02866":null,"SJAG_02927":null,"SJAG_02990":null,"SJAG_03042":null,"SJAG_03350":null,"SJAG_03356":null,"SJAG_03418":null,"SJAG_03543":null,"SJAG_03635":null,"SJAG_03664":null,"SJAG_03689":null,"SJAG_03789":null,"SJAG_03844":null,"SJAG_03916":null,"SJAG_03926":null,"SJAG_03942":null,"SJAG_03982":null,"SJAG_03989":null,"SJAG_04030":null,"SJAG_04039":null,"SJAG_04141":null,"SJAG_04186":null,"SJAG_04253":null,"SJAG_04412":null,"SJAG_04508":null,"SJAG_04574":null,"SJAG_04623":null,"SJAG_04670":null,"SJAG_05329":null,"SJAG_05372":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005694","GO:0032991"],"is_obsolete":false,"name":"pericentric heterochromatin","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0031618","GO:0002137","GO:0034507","GO:0062199"],"synonyms":[{"name":"centric heterochromatin","type":"exact"},{"name":"centromeric heterochromatin","type":"exact"},{"name":"chromosome, centric outer repeat region","type":"related"},{"name":"chromosome, centromeric inner repeat region","type":"related"},{"name":"chromosome, centromeric outer repeat region","type":"related"},{"name":"nuclear centric heterochromatin","type":"narrow"},{"name":"nuclear cluster","type":"narrow"},{"name":"nuclear pericentric heterochromatin","type":"narrow"}],"termid":"GO:0005721","terms_by_termid":{"GO:0005721":null}}


id: PBO:0092027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F1-FO ATP synthase subunit 8","termid":"PBO:0092027"}


id: GO:0045221
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of FasL.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of glycoprotein biosynthetic process","termid":"GO:0010561"},{"relation_name":"is_a","term_name":"regulation of FasL production","termid":"GO:0045219"},{"relation_name":"negatively_regulates","term_name":"FasL biosynthetic process","termid":"GO:0045210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of FasL production","synonyms":[{"name":"down regulation of FasL biosynthetic process","type":"exact"},{"name":"down-regulation of FasL biosynthetic process","type":"exact"},{"name":"downregulation of FasL biosynthetic process","type":"exact"},{"name":"inhibition of FasL biosynthetic process","type":"narrow"},{"name":"negative regulation of FasL anabolism","type":"exact"},{"name":"negative regulation of FasL biosynthesis","type":"exact"},{"name":"negative regulation of FasL biosynthetic process","type":"exact"},{"name":"negative regulation of FasL formation","type":"exact"},{"name":"negative regulation of FasL synthesis","type":"exact"}],"termid":"GO:0045221"}


id: _global:capable_of
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. ","direct_ancestors":[{"relation_name":"is_a","term_name":"capable_of_part_of","termid":"_global:capable_of_part_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capable_of","secondary_identifiers":["RO:0002215"],"termid":"_global:capable_of"}


id: PBO:0091654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane uricil/uridine transmembrane transporter transmembrane transporter family","termid":"PBO:0091654"}


id: PBO:0076250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUZ12 pseudogene 1","termid":"PBO:0076250"}


id: GO:0036007
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A body present in the cytoplasm of some dinoflagellates, which is the source of bioluminescence; emits light on acidification in the presence of oxygen.","definition_xrefs":["PMID:4501583","PMID:5642469","GOC:pr","GOC:mag"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"scintillon","termid":"GO:0036007"}


id: GO:0051344
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops or reduces the rate of cyclic nucleotide phosphodiesterase activity, the catalysis of the reaction: nucleotide 3',5'-cyclic phosphate + H2O = nucleotide 5'-phosphate.","definition_xrefs":["GOC:ai","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cyclic-nucleotide phosphodiesterase activity","termid":"GO:0051342"},{"relation_name":"is_a","term_name":"negative regulation of hydrolase activity","termid":"GO:0051346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cyclic-nucleotide phosphodiesterase activity","synonyms":[{"name":"3',5' cyclic nucleotide phosphodiesterase inhibitor","type":"exact"},{"name":"3',5'-cyclic-AMP phosphodiesterase inhibitor","type":"narrow"},{"name":"cAMP phosphodiesterase inhibitor","type":"narrow"},{"name":"down regulation of cyclic nucleotide phosphodiesterase activity","type":"exact"},{"name":"down-regulation of cyclic nucleotide phosphodiesterase activity","type":"exact"},{"name":"downregulation of cyclic nucleotide phosphodiesterase activity","type":"exact"},{"name":"inhibition of cyclic nucleotide phosphodiesterase activity","type":"narrow"},{"name":"negative regulation of 3',5' cyclic nucleotide phosphodiesterase activity","type":"exact"},{"name":"negative regulation of 3',5'-cyclic-AMP phosphodiesterase activity","type":"narrow"},{"name":"negative regulation of cAMP phosphodiesterase activity","type":"narrow"},{"name":"negative regulation of cGMP phosphodiesterase activity","type":"narrow"},{"name":"negative regulation of cyclic nucleotide phosphodiesterase activity","type":"exact"},{"name":"phosphodiesterase inhibitor","type":"related"}],"termid":"GO:0051344"}


id: GO:0042915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of group A colicins (colicins E1, E2, E3, A, K, and N) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:jl","PMID:9171417"],"direct_ancestors":[{"relation_name":"is_a","term_name":"colicin transport","termid":"GO:0042914"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"group A colicin transport","termid":"GO:0042915"}


id: PBO:0016513
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-causally_upstream_of","termid":"PBO:0016513"}


id: PBO:0075459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPATA8 antisense RNA 1 (head to head)","termid":"PBO:0075459"}


id: GO:0019443
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of tryptophan, catalyzed by the enzyme tryptophanase (EC:4.1.99.1).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete tryptophan catabolic process, using tryptophanase (obsolete GO:0019443)","synonyms":[{"name":"tryptophan breakdown, using tryptophanase","type":"exact"},{"name":"tryptophan catabolic process, using tryptophanase","type":"exact"},{"name":"tryptophan degradation, using tryptophanase","type":"exact"}],"termid":"GO:0019443"}


id: PBO:0030811
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-unequal_meiotic_chromosome_segregation","termid":"PBO:0030811"}


id: PBO:0014604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease II (RNB) family, involved in nuclear-transcribed mRNA catabolic process (predicted)","termid":"PBO:0014604"}


id: PBO:0061788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteoclast stimulatory transmembrane protein","termid":"PBO:0061788"}


id: GO:0004126
data:
  {"annotated_genes":["SJAG_01673"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[85374],"is_not":false,"summary":null,"term":"GO:0004126"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: cytidine + H+ + H2O = uridine + NH4 and deoxycytidine + H+ + H2O = deoxyuridine + NH4+.","definition_xrefs":["EC:3.5.4.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"},{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01673":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016810","GO:0016787"],"is_obsolete":false,"name":"cytidine deaminase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-73608","Reactome:R-HSA-83677","EC:3.5.4.14","Reactome:R-HSA-9817513"],"synonyms":[{"name":"(deoxy)cytidine deaminase activity","type":"exact"},{"name":"cytidine aminohydrolase activity","type":"related"},{"name":"cytosine nucleoside deaminase activity","type":"related"},{"name":"deoxycytidine deaminase activity","type":"related"}],"termid":"GO:0004126","terms_by_termid":{"GO:0004126":null}}


id: PBO:0047888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(6)(p25.1)","termid":"PBO:0047888"}


id: PBO:0073909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC16A1 antisense RNA 1","termid":"PBO:0073909"}


id: GO:0075116
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont activates, maintains or increases the frequency, rate or extent of host transmembrane receptor-mediated cAMP signal transduction. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by symbiont of host transmembrane receptor-mediated cAMP signal transduction (obsolete GO:0075116)","synonyms":[{"name":"activation by symbiont of host transmembrane receptor-mediated cAMP signal transduction","type":"narrow"},{"name":"positive regulation by symbiont of host transmembrane receptor-mediated cAMP signal transduction","type":"exact"},{"name":"positive regulation by symbiont of host transmembrane receptor-mediated cAMP signaling","type":"exact"},{"name":"promotion by symbiont of host transmembrane receptor-mediated cAMP signal transduction","type":"exact"},{"name":"stimulation by symbiont of host transmembrane receptor-mediated cAMP signal transduction","type":"narrow"},{"name":"upregulation by symbiont of host transmembrane receptor-mediated cAMP signal transduction","type":"exact"}],"termid":"GO:0075116"}


id: GO:2001264
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of C-C chemokine binding.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein binding","termid":"GO:0032091"},{"relation_name":"is_a","term_name":"regulation of C-C chemokine binding","termid":"GO:2001263"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of C-C chemokine binding","termid":"GO:2001264"}


id: GO:0031688
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an A2B adenosine receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenosine receptor binding","termid":"GO:0031685"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"A2B adenosine receptor binding","synonyms":[{"name":"A2B adenosine receptor ligand","type":"narrow"}],"termid":"GO:0031688"}


id: PBO:0064793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase, Mg2+/Mn2+ dependent 1L","termid":"PBO:0064793"}


id: GO:0160025
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A sensory perception which causes the desire or reflex to scratch.","definition_xrefs":["PMID:29723501","Wikipedia:Itch","PMID:30734045","PMID:26015312"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory perception","termid":"GO:0007600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sensory perception of itch","synonyms":[{"name":"pruritus","type":"exact"}],"termid":"GO:0160025"}


id: PBO:0059183
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melanoregulin pseudogene 1","termid":"PBO:0059183"}


id: PR:Q10171
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- uch1 gene.","definition_xrefs":["UniProtKB:Q10171","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin carboxyl-terminal hydrolase Uch1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC27F1.03c","synonyms":[{"name":"SPAC27F1.03c","type":"related"},{"name":"Spom972h-uch1","type":"exact"},{"name":"ubiquitin carboxyl-terminal hydrolase 1 (Schizosaccharomyces pombe 972h-)","type":"related"}],"termid":"PR:Q10171"}


id: GO:0051219
data:
  {"annotated_genes":["SJAG_03118","SJAG_04933"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71518,76926],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990269"}]},"cv_name":"molecular_function","definition":"Binding to a phosphorylated protein.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03118":null,"SJAG_04933":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"phosphoprotein binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"phosphorylated protein binding","type":"exact"}],"termid":"GO:0051219","terms_by_termid":{"GO:1990269":null}}


id: GO:0070123
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with transforming growth factor beta to initiate a change in cell activity; facilitates ligand binding to type I and type II TGF-beta receptors.","definition_xrefs":["PMID:9759503","GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transforming growth factor beta receptor activity","termid":"GO:0005024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0004672"}],"interesting_parent_ids":["GO:0016301","GO:0140096","GO:0004672","GO:0003674","GO:0016740","GO:0038023","GO:0003824"],"is_obsolete":false,"name":"transforming growth factor beta receptor activity, type III","synonyms":[{"name":"betaglycan","type":"narrow"},{"name":"endoglin","type":"narrow"},{"name":"transforming growth factor beta ligand binding to type III receptor","type":"related"},{"name":"type III TGF-beta receptor activity","type":"exact"},{"name":"type III TGFbeta receptor activity","type":"exact"},{"name":"type III transforming growth factor beta receptor activity","type":"exact"}],"termid":"GO:0070123"}


id: PR:O74477
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pca1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74477"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metacaspase-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1840.04","synonyms":[{"name":"Spom972h-pca1","type":"exact"}],"termid":"PR:O74477"}


id: PBO:0056864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MICA antisense RNA 1","termid":"PBO:0056864"}


id: GO:1901003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of fermentation.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular metabolic process","termid":"GO:0031324"},{"relation_name":"is_a","term_name":"regulation of fermentation","termid":"GO:0043465"},{"relation_name":"negatively_regulates","term_name":"fermentation","termid":"GO:0006113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"negatively_regulates","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"negative regulation of fermentation","synonyms":[{"name":"down regulation of fermentation","type":"exact"},{"name":"down-regulation of fermentation","type":"exact"},{"name":"downregulation of fermentation","type":"exact"},{"name":"inhibition of fermentation","type":"narrow"}],"termid":"GO:1901003"}


id: PBO:0063402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDCL2 pseudogene 1","termid":"PBO:0063402"}


id: PBO:0061429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor subfamily 1 group H member 2","termid":"PBO:0061429"}


id: PBO:0031425
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-phenotype","termid":"PBO:0031425"}


id: PBO:0086499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative plasma membrane phosphatase; involved in the general stress response and inactivating dephosphorylation of Mep2p; required along with Psr1p and binding partner Whi2p for full activation of STRE-mediated gene expression, possibly through Msn2p dephosphorylation, and for inhibition of TORC1 in response to limiting amino acids; regulates the sodium ion stress response with Psr1p; member of the HAD family of protein phosphatases","termid":"PBO:0086499"}


id: GO:0097673
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An SCF ubiquitin ligase complex in which the F-box protein is YLR224W in S. cerevisiae.","definition_xrefs":["PMID:14747994","GOC:jd","PMID:25982115","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SCF ubiquitin ligase complex","termid":"GO:0019005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"SCF-Ucc1 ubiquitin ligase complex","synonyms":[{"name":"SCF-YLR224W ubiquitin ligase complex","type":"exact"}],"termid":"GO:0097673"}


id: PBO:0029985
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_ubiquitin_ligase_activity","termid":"PBO:0029985"}


id: PBO:0084008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycogen debranching enzyme; contains glucanotranferase and alpha-1,6-amyloglucosidase activities; required for glycogen degradation; phosphorylated in mitochondria; activity is inhibited by Igd1p; protein abundance increases in response to DNA replication stress","termid":"PBO:0084008"}


id: GO:0097048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process in a dendritic cell, a cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation.","definition_xrefs":["GOC:BHF","PMID:15059845","GOC:mtg_apoptosis","CL:0000451"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte apoptotic process","termid":"GO:0071887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dendritic cell apoptotic process","synonyms":[{"name":"dendritic cell apoptosis","type":"narrow"}],"termid":"GO:0097048"}


id: GO:0097513
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A bipolar filament composed of myosin II molecules.","definition_xrefs":["GOC:cjm","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myosin filament","termid":"GO:0032982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"myosin II filament","termid":"GO:0097513"}


id: PR:Q10173
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A kinetochore protein Nuf2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR21650:SF2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein nuf2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC27F1.04c","secondary_identifiers":["UniProtKB:Q10173"],"synonyms":[{"name":"NMS complex subunit nuf2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPAC27F1.04c","type":"related"},{"name":"Spom972h-NUF2","type":"exact"}],"termid":"PR:Q10173"}


id: PBO:0080684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain, phosphoinositide interacting 1","termid":"PBO:0080684"}


id: GO:0034441
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of a lipid or protein within a plasma lipoprotein particle by oxidation of the lipid or one or more amino acids.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma lipoprotein particle remodeling","termid":"GO:0034369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"plasma lipoprotein particle oxidation","synonyms":[{"name":"plasma lipoprotein oxidation","type":"related"}],"termid":"GO:0034441"}


id: PBO:0058662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6790","termid":"PBO:0058662"}


id: FYPO:0000711
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cell cycle arrest in response to nitrogen starvation occurs in G1 phase, but its occurrence is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of mitotic cell cycle","termid":"FYPO:0000148"},{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle arrest in response to nitrogen starvation","termid":"FYPO:0000710"},{"relation_name":"is_a","term_name":"abnormal cell cycle arrest in mitotic G1 phase","termid":"FYPO:0005097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0000298","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased cell cycle arrest in mitotic G1 phase in response to nitrogen starvation","synonyms":[{"name":"decreased cell cycle arrest in mitotic G1 phase during cellular response to nitrogen starvation","type":"exact"},{"name":"decreased cell cycle arrest in mitotic G1 phase in response to nitrogen depletion","type":"exact"},{"name":"decreased cell cycle arrest in mitotic G1 phase in response to nitrogen deprivation","type":"exact"},{"name":"decreased mitotic G1 arrest in response to nitrogen starvation","type":"exact"},{"name":"decreased mitotic cell cycle arrest in G1 phase in response to nitrogen starvation","type":"exact"},{"name":"decreased nitrogen deprivation-induced G1 arrest","type":"exact"},{"name":"reduced cell cycle arrest in mitotic G1 phase in response to nitrogen starvation","type":"exact"}],"termid":"FYPO:0000711"}


id: PBO:0080660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WAP four-disulfide core domain 5","termid":"PBO:0080660"}


id: PBO:0085735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in threonylcarbamoyl adenosine biosynthesis; Sua5p and Qri7p are necessary and sufficient for RNA t6A modification in vitro; null mutant lacks N6-threonylcarbamoyl adenosine (t6A) modification in the anticodon loop of ANN-decoding tRNA; member of conserved YrdC/Sua5 family; binds single-stranded telomeric DNA and null mutant has abnormal telomere length","termid":"PBO:0085735"}


id: PBO:0083553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps verified gene DID2/YKR035W-A","termid":"PBO:0083553"}


id: FYPO:0002476
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell is viable, cell shape is altered, and cell size remains normal, and in which vacuoles are more visible (usually by microscopy) than normal.","definition_xrefs":["PomBase:vw","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"vacuolated","termid":"FYPO:0001581"},{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"is_a","term_name":"viable vegetative cell, abnormal cell shape, normal cell size","termid":"FYPO:0001510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"has_part","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0001985","FYPO:0001312","FYPO:0001320","FYPO:0000257","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable vacuolated vegetative cell, abnormal cell shape, normal cell size","synonyms":[{"name":"viable vacuolated vegetative cell with abnormal cell shape and normal cell size","type":"related"},{"name":"viable vacuolated vegetative cell, abnormal cell shape, normal cell length","type":"narrow"},{"name":"viable vacuolated vegetative cell, abnormal cell shape, normal cell size during mitotic cell cycle","type":"related"},{"name":"viable vegetative misshapen vacuolated cell","type":"related"},{"name":"viable, vacuolated, abnormal cell shape, normal cell size during vegetative growth","type":"exact"}],"termid":"FYPO:0002476"}


id: FYPO:0002787
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which vacuoles are smaller than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vacuolar morphology","termid":"FYPO:0002257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"small vacuoles","synonyms":[{"name":"decreased vacuole size","type":"exact"},{"name":"reduced vacuole size","type":"exact"}],"termid":"FYPO:0002787"}


id: PBO:0054859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2273","termid":"PBO:0054859"}


id: GO:0141014
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular process that results in the silencing of ribosomes in quiescent cells. Quiescence takes place when cells encounter unfavorable conditions and cease to grow in bacteria and yeast. It also takes place in some specialized cells in higher eukaryotes, such as eggs. Ribosomes in a hibernation state are kept silent via association with proteins with inhibitory and protective functions.","definition_xrefs":["PMID:36653451","PMID:30177741","PMID:28468753"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of translation","termid":"GO:0017148"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"ribosome hibernation","termid":"GO:0141014"}


id: PBO:0086592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; expression directly regulated by the metabolic and meiotic transcriptional regulator Ume6p; overexpression causes a cell cycle delay or arrest; non-essential gene; YIR016W has a paralog, YOL036W, that arose from the whole genome duplication","termid":"PBO:0086592"}


id: PBO:0060624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NCK associated protein 1 like","termid":"PBO:0060624"}


id: PBO:0069987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1282, pseudogene","termid":"PBO:0069987"}


id: PBO:0081562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 486","termid":"PBO:0081562"}


id: FYPO:0003473
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An inviable phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation despite abnormal chromosome segregation, producing inviable daughter cells, and in which the septum forms in a position that partitions both nuclei into one compartment, when the cell is subject to salt stress. Cell separation may or may not be completed.","definition_xrefs":["PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoseptate vegetative cell with binucleate and anucleate compartments","termid":"FYPO:0003166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"septation following abnormal chromosome segregation, with binucleate and anucleate compartment formation during cellular response to salt stress","synonyms":[{"name":"septation following abnormal chromosome segregation, with anucleate cell formation during cellular response to salt stress during mitotic cell cycle","type":"related"},{"name":"septation following abnormal chromosome segregation, with anucleate cell formation during cellular response to salt stress during vegetative growth","type":"exact"},{"name":"septation following abnormal chromosome segregation, with binucleate cell formation during cellular response to salt stress","type":"exact"}],"termid":"FYPO:0003473"}


id: GO:0050368
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-tyrosine = 3-amino-3-(4-hydroxyphenyl)propanoate.","definition_xrefs":["RHEA:15781"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular aminotransferase activity","termid":"GO:0016869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"L-tyrosine 2,3-aminomutase activity","secondary_identifiers":["MetaCyc:TYROSINE-23-AMINOMUTASE-RXN","KEGG_REACTION:R00739","EC:5.4.3.6"],"synonyms":[{"name":"tyrosine 2,3-aminomutase activity","type":"related"},{"name":"tyrosine alpha,beta-mutase activity","type":"related"}],"termid":"GO:0050368"}


id: PBO:0048683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GLI family zinc finger 2","termid":"PBO:0048683"}


id: PBO:0000506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperonin-containing T-complex beta subunit Cct2","termid":"PBO:0000506"}


id: GO:1902408
data:
  {"annotated_genes":["SJAG_01215","SJAG_00807","SJAG_02380","SJAG_02838","SJAG_03596","SJAG_01889","SJAG_00845","SJAG_03309","SJAG_00256","SJAG_02392","SJAG_01787"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84467,92452,104967,106877,115459],"is_not":false,"summary":null,"term":"GO:1902408"},{"annotations":[115458],"is_not":true,"summary":null,"term":"GO:1902408"},{"annotations":[99824,86930,115460,91991,106879],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1903617"},{"annotations":[84052,107481,97507],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1902472"}]},"cv_name":"biological_process","definition":"The process in which a contractile ring is positioned in a specific location during the mitotic cell cycle. This process is critical for both for both symmetric and asymmetric cell divisions.","definition_xrefs":["PMID:28162898","PMID:26553932"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokinesis, division site positioning","termid":"GO:0007105"},{"relation_name":"is_a","term_name":"mitotic cytokinetic process","termid":"GO:1902410"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00256":null,"SJAG_00807":null,"SJAG_00845":null,"SJAG_01143":null,"SJAG_01215":null,"SJAG_01787":null,"SJAG_01889":null,"SJAG_02380":null,"SJAG_02392":null,"SJAG_02838":null,"SJAG_03309":null,"SJAG_03596":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0000281"}],"interesting_parent_ids":["GO:0000281","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"mitotic cytokinesis, division site positioning","references_by_uniquename":{"GO_REF:0000107":null,"PMID:25866389":null},"synonyms":[{"name":"mitotic cytokinesis, site selection","type":"exact"}],"termid":"GO:1902408","terms_by_termid":{"GO:1902408":null,"GO:1902472":null,"GO:1903617":null}}


id: PBO:0072042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 12","termid":"PBO:0072042"}


id: PBO:0040226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"activating transcription factor 2","termid":"PBO:0040226"}


id: PBO:0073101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase complex subunit D pseudogene 5","termid":"PBO:0073101"}


id: PBO:0087122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RING-H2 domain core subunit of multiple ubiquitin ligase complexes; subunit of Skp1-Cullin-F-box (SCF) that tethers the Cdc34p (E2) and Cdc53p (cullin) SCF subunits, and is required for degradation of Gic2p, Far1p, Sic1p and Cln2p; subunit of the Rtt101p-Mms1p-Mms22p ubiquitin ligase that stabilizes replication forks after DNA lesions; subunit of the Cul3p-Elc1p-Ela1p ubiquitin ligase involved in Rpb1p degradation as part of transcription-coupled repair","termid":"PBO:0087122"}


id: PBO:0088674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrestin-related substrate adaptor Rod1","termid":"PBO:0088674"}


id: PBO:0050443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein R pseudogene 1","termid":"PBO:0050443"}


id: PBO:0004438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIM22 inner membrane protein import complex subunit Tim22 (predicted)","termid":"PBO:0004438"}


id: GO:0098865
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change that impairs the structure or temporarily subverts the tight cell-cell junctions between cells of the host. Tight cell-cell junctions, a cell-cell junction that seals cells together in an epithelium in a way that prevents even small molecules from leaking from one side of the sheet to the other.","definition_xrefs":["PMID:24287273"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host cell-cell junction","termid":"GO:0044067"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host tight cell-cell junction","synonyms":[{"name":"disruption by symbiont of host tight cell-cell junction","type":"exact"},{"name":"disruption of host tight cell-cell junction","type":"broad"},{"name":"modification by symbiont of host bicellular tight junctions","type":"related"},{"name":"symbiont-mediated disruption of host tight cell-cell junction","type":"related"}],"termid":"GO:0098865"}


id: PR:O13815
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC17H9.18c gene.","definition_xrefs":["UniProtKB:O13815","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 52 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17H9.18c","synonyms":[{"name":"Spom972h-SPAC17H9.18c","type":"exact"}],"termid":"PR:O13815"}


id: GO:0102522
data:
  {"annotated_genes":["SJAG_04735"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94208],"is_not":false,"summary":null,"term":"GO:0102522"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + 4-demethylwyosine37 in tRNAPhe = 5'-S-methyl-5'-thioadenosine + H+ + 7-[(3S)-3-amino-3-carboxypropyl]-4-demethylwyosine37 in tRNAPhe.","definition_xrefs":["EC:2.5.1.114","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04735":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140101","GO:0003824","GO:0016740","GO:0140098","GO:0003674","GO:0016765"],"is_obsolete":false,"name":"tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:36355","MetaCyc:RXN-14518"],"termid":"GO:0102522","terms_by_termid":{"GO:0102522":null}}


id: FYPO:0000835
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell is lower than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered protein level","termid":"FYPO:0000834"},{"relation_name":"is_a","term_name":"decreased level of substance in cell","termid":"FYPO:0000991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0006551","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein level","synonyms":[{"name":"decreased protein accumulation","type":"related"},{"name":"protein/peptide accumulation: decreased","type":"related"},{"name":"reduced protein level","type":"exact"}],"termid":"FYPO:0000835"}


id: GO:0090287
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stimulus","termid":"GO:0048583"},{"relation_name":"regulates","term_name":"cellular response to growth factor stimulus","termid":"GO:0071363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular response to growth factor stimulus","termid":"GO:0090287"}


id: PBO:0110391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTMR9 pseudogene 1","termid":"PBO:0110391"}


id: GO:0032083
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops or reduces the rate of type IV restriction endodeoxyribonuclease activity.","definition_xrefs":["GOC:dph","GOC:mah","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of restriction endodeoxyribonuclease activity","termid":"GO:0032073"},{"relation_name":"is_a","term_name":"regulation of type IV site-specific deoxyribonuclease activity","termid":"GO:0032087"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0006259"],"is_obsolete":false,"name":"negative regulation of type IV site-specific deoxyribonuclease activity","synonyms":[{"name":"down regulation of type IV restriction endodeoxyribonuclease activity","type":"exact"},{"name":"down-regulation of type IV restriction endodeoxyribonuclease activity","type":"exact"},{"name":"downregulation of type IV restriction endodeoxyribonuclease activity","type":"exact"},{"name":"inhibition of type IV restriction endodeoxyribonuclease activity","type":"narrow"},{"name":"negative regulation of type IV restriction endodeoxyribonuclease activity","type":"exact"},{"name":"type IV restriction endodeoxyribonuclease inhibitor","type":"related"},{"name":"type IV restriction enzyme inhibitor","type":"related"}],"termid":"GO:0032083"}


id: GO:0030863
data:
  {"annotated_genes":["SJAG_03681","SJAG_02245","SJAG_00807","SJAG_03704","SJAG_01894","SJAG_03703","SJAG_03465","SJAG_03374","SJAG_02336","SJAG_00750","SJAG_01889","SJAG_02838","SJAG_00229","SJAG_03119","SJAG_03025","SJAG_00185","SJAG_03380","SJAG_01613","SJAG_04517","SJAG_02707","SJAG_03379","SJAG_03455","SJAG_02282","SJAG_04498","SJAG_01384","SJAG_02202","SJAG_02320","SJAG_04621","SJAG_01993","SJAG_01787","SJAG_04624","SJAG_05285","SJAG_03631","SJAG_04077","SJAG_02831","SJAG_02864","SJAG_00521","SJAG_03887","SJAG_04703","SJAG_02266","SJAG_00228","SJAG_01224","SJAG_03581","SJAG_04375","SJAG_00663","SJAG_02511","SJAG_01297","SJAG_04724","SJAG_04465","SJAG_04644","SJAG_01748","SJAG_01268","SJAG_04461","SJAG_02561","SJAG_00405","SJAG_04509","SJAG_02177","SJAG_03086","SJAG_02392","SJAG_03146","SJAG_04479","SJAG_00152","SJAG_02700","SJAG_00907","SJAG_00113","SJAG_04982","SJAG_00700","SJAG_00938","SJAG_00279","SJAG_02737","SJAG_04052","SJAG_03375","SJAG_02228","SJAG_02566","SJAG_03564","SJAG_00140","SJAG_03088","SJAG_00851","SJAG_04781","SJAG_04001","SJAG_04887","SJAG_01964","SJAG_01732","SJAG_04100","SJAG_02431","SJAG_01370","SJAG_03011","SJAG_04886","SJAG_01114","SJAG_02626","SJAG_02087","SJAG_03596","SJAG_00920","SJAG_02045","SJAG_00268","SJAG_00082","SJAG_00970","SJAG_03044","SJAG_02075","SJAG_03145","SJAG_01143","SJAG_01665","SJAG_02286","SJAG_00649","SJAG_00845","SJAG_02169","SJAG_02278","SJAG_01277","SJAG_00677","SJAG_04597","SJAG_03625"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[91497,113926],"is_not":false,"summary":null,"term":"GO:0030863"},{"annotations":[85537],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030478"},{"annotations":[109007,98626,90923,93853,94955,102955,114898,86832,87029,112263,89958,114541,110414,103265,88714,99181,103143,95796,85989,91413,97864,99426,84444,88673,95973,97833,101449,107128,99364,104110,91021,98854,102994,108295,89785,95434,97068,84340,101237,101255,106799,107771,110973,105169,102123,107971,95015,108269,94049,97038,104851],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030479"},{"annotations":[115489,98538,115490,115653,115492,115488,115213,115491],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005826"},{"annotations":[104354,94744,100001,95328,87517],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0055028"},{"annotations":[83948,87139,93703,107503],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030981"},{"annotations":[99864,93704,91335],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1903754"},{"annotations":[93043,114201,88042,99035],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0036286"},{"annotations":[87142],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032117"},{"annotations":[97051,97381,99818,104244,115336,115465,115468,103151,115470,106870,85981,97388,114878,85498,86926,89962,111905,113950,88463,102997,115463,113113,113702,84465,88722,109465,106910,92448,94164,96817,111990,88677,114686,98542,108408,101453,115472,113932,86153,86880,90537,91068,90709,93780,94420,102304,91420,93340,84083],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0110085"},{"annotations":[96818,96648,101242,105175,113933],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0120106"},{"annotations":[86154,91980,93341,86927,99819,106911,97052,105176,92449,102305,113951,113934,90538,91069,84466,109466,108409],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0120105"},{"annotations":[105177,113935,103152,88723,93781,113023,100040,97078,98543,104245,88464,94030,96229,94165,113114],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0120104"}]},"cv_name":"cellular_component","definition":"The portion of the cytoskeleton that lies just beneath the plasma membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeleton","termid":"GO:0005856"},{"relation_name":"part_of","term_name":"cell 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cytoskeleton","references_by_uniquename":{"GO_REF:0000107":null,"PMID:25866389":null,"PMID:27059155":null,"PMID:27734801":null,"PMID:28655757":null,"PMID:36148799":null},"termid":"GO:0030863","terms_by_termid":{"GO:0005826":null,"GO:0030478":null,"GO:0030479":null,"GO:0030863":null,"GO:0030981":null,"GO:0032117":null,"GO:0036286":null,"GO:0055028":null,"GO:0110085":null,"GO:0120104":null,"GO:0120105":null,"GO:0120106":null,"GO:1903754":null}}


id: PBO:0083420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized gene YNL144C","termid":"PBO:0083420"}


id: GO:0045915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving catecholamine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of amine metabolic process","termid":"GO:0033240"},{"relation_name":"is_a","term_name":"regulation of catecholamine metabolic process","termid":"GO:0042069"},{"relation_name":"positively_regulates","term_name":"catecholamine metabolic process","termid":"GO:0006584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of catecholamine metabolic process","synonyms":[{"name":"activation of catecholamine metabolic process","type":"narrow"},{"name":"positive regulation of catecholamine metabolism","type":"exact"},{"name":"stimulation of catecholamine metabolic process","type":"narrow"},{"name":"up regulation of catecholamine metabolic process","type":"exact"},{"name":"up-regulation of catecholamine metabolic process","type":"exact"},{"name":"upregulation of catecholamine metabolic process","type":"exact"}],"termid":"GO:0045915"}


id: GO:0033776
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + NADPH + O2 + phenylacetone = benzyl acetate + H2O + NADP+.","definition_xrefs":["EC:1.14.13.92","RHEA:10124"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"phenylacetone monooxygenase activity","secondary_identifiers":["MetaCyc:1.14.13.92-RXN","KEGG_REACTION:R07201"],"synonyms":[{"name":"PAMO","type":"related"},{"name":"phenylacetone,NADPH:oxygen oxidoreductase activity","type":"related"}],"termid":"GO:0033776"}


id: PBO:0034776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanyl-nucleotide exchange factor Vps902","termid":"PBO:0034776"}


id: PBO:0048505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDF5 antisense RNA 1","termid":"PBO:0048505"}


id: GO:0005946
data:
  {"annotated_genes":["SJAG_00129","SJAG_00182","SJAG_01862","SJAG_01646","SJAG_01531","SJAG_01427","SJAG_04859"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[73407,87987,89476,92656,93277,97177,107613],"is_not":false,"summary":null,"term":"GO:0005946"}]},"cv_name":"cellular_component","definition":"A protein complex that possesses alpha,alpha-trehalose-phosphate synthase (UDP-forming) and trehalose-phosphatase activities, and thus catalyzes two reactions in trehalose biosynthesis. In the complex identified in Saccharomyces, Tps1p has alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity, Tps2p has trehalose 6-phosphate phosphatase activity; Tps3p is a regulatory subunit, and an additional subunit, Tsl1p, may be present.","definition_xrefs":["PMID:9837904"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00129":null,"SJAG_00182":null,"SJAG_01427":null,"SJAG_01531":null,"SJAG_01646":null,"SJAG_01862":null,"SJAG_04859":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"UDP-glucose-glucosephosphate glucosyltransferase complex","type":"exact"},{"name":"trehalose-6-phosphate synthase complex","type":"exact"},{"name":"trehalose-6-phosphate synthase/phosphatase","type":"exact"}],"termid":"GO:0005946","terms_by_termid":{"GO:0005946":null}}


id: PATO:0002486
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a process by virtue of that process having two or more organisms as participants.","definition_xrefs":["PATOC:DS"],"direct_ancestors":[{"relation_name":"is_a","term_name":"process quality","termid":"PATO:0001236"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multi-organismal process quality","termid":"PATO:0002486"}


id: GO:0000757
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation without cellular fusion.","definition_xrefs":["GOC:clt"],"gene_count":0,"genotype_count":0,"name":"obsolete signal transduction involved in regulation of conjugation with mutual genetic exchange (obsolete GO:0000757)","synonyms":[{"name":"signal transduction involved in conjugation without cellular fusion","type":"exact"}],"termid":"GO:0000757"}


id: GO:0045475
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The rhythm of the locomotor activity of an organism during its 24 hour activity cycle.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"locomotory behavior","termid":"GO:0007626"},{"relation_name":"is_a","term_name":"circadian behavior","termid":"GO:0048512"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"locomotor rhythm","synonyms":[{"name":"circadian locomotor activity rhythm","type":"narrow"}],"termid":"GO:0045475"}


id: PBO:0000925
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase, NIMA related Fin1","termid":"PBO:0000925"}


id: PBO:0052954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KTN1 antisense RNA 1","termid":"PBO:0052954"}


id: PBO:0005899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Cysteine, mitochondrial","termid":"PBO:0005899"}


id: PBO:0082993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytosolic inhibitor of vacuolar proteinase B (PRB1); required for efficient vacuole inheritance; with thioredoxin forms protein complex LMA1, which assists in priming SNARE molecules and promotes vacuole fusion; protein abundance increases in response to DNA replication stress","termid":"PBO:0082993"}


id: PR:O60161
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cirhin that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR22841:SF4","OMA:SCHPO03817","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 small nucleolar RNA-associated protein 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19F5.02c","secondary_identifiers":["UniProtKB:O60161"],"synonyms":[{"name":"Spom972h-CIRH1A","type":"exact"},{"name":"U3 protein 4 required for transcription (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"U3 snoRNA-associated protein 4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60161"}


id: GO:1904553
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of chemotaxis to arachidonic acid.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:16382163"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of chemotaxis","termid":"GO:0050922"},{"relation_name":"is_a","term_name":"regulation of chemotaxis to arachidonic acid","termid":"GO:1904552"},{"relation_name":"negatively_regulates","term_name":"chemotaxis to arachidonic acid","termid":"GO:0034670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of chemotaxis to arachidonic acid","synonyms":[{"name":"down regulation of chemotaxis to arachidonic acid","type":"exact"},{"name":"down-regulation of chemotaxis to arachidonic acid","type":"exact"},{"name":"downregulation of chemotaxis to arachidonic acid","type":"exact"},{"name":"inhibition of chemotaxis to arachidonic acid","type":"narrow"}],"termid":"GO:1904553"}


id: GO:0072585
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: xanthosine + H2O = D-ribose + xanthine.","definition_xrefs":["GOC:kad","PMID:21235647","MetaCyc:RXN0-363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleosidase activity","termid":"GO:0008477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016798"],"is_obsolete":false,"name":"xanthosine nucleotidase activity","secondary_identifiers":["RHEA:27994"],"synonyms":[{"name":"xanthosine ribohydrolase activity","type":"exact"}],"termid":"GO:0072585"}


id: PR:O74526
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A myosin light chain kinase 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase C70.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC70.05c","secondary_identifiers":["UniProtKB:O74526"],"synonyms":[{"name":"Spom972h-MYLK3","type":"exact"}],"termid":"PR:O74526"}


id: MOD:01362
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to O-thiophospho-L-serine.","definition_xrefs":["Unimod:260#S","PubMed:11507762","PubMed:12110917"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiophosphorylated residue","termid":"MOD:00583"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-thiophospho-L-serine","synonyms":[{"name":"Thiophospho","type":"related"},{"name":"Thiophosphorylation","type":"related"}],"termid":"MOD:01362"}


id: PBO:0077260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane p24 trafficking protein 10","termid":"PBO:0077260"}


id: FYPO:0002447
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the N-glycosylation of one or more specific proteins, or of specific protein sites, is abnormal. Protein N-linked glycosylation is the addition of a carbohydrate or carbohydrate derivative unit to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan.","definition_xrefs":["GO:0006487","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein glycosylation during vegetative growth","termid":"FYPO:0001910"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0005447","FYPO:0001320","FYPO:0002274","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal protein N-linked glycosylation during vegetative growth","synonyms":[{"name":"abnormal protein N-glycosylation during vegetative growth","type":"exact"},{"name":"abnormal protein N-linked glycosylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002447"}


id: GO:0072591
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + citrate + L-glutamate = ADP + phosphate + beta-citryl-L-glutamate.","definition_xrefs":["PMID:20657015"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-nitrogen bonds","termid":"GO:0016879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"citrate-L-glutamate ligase activity","termid":"GO:0072591"}


id: GO:0098812
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end of a rRNA, occurring as part of the process of polyadenylation-dependent rRNA catabolism in the nucleus.","definition_xrefs":["GOC:dph","GOC:tb","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete nuclear rRNA polyadenylation involved in polyadenylation-dependent rRNA catabolic process (obsolete GO:0098812)","synonyms":[{"name":"nuclear rRNA polyadenylation during polyadenylation-dependent rRNA catabolic process","type":"related"},{"name":"nuclear rRNA polyadenylation involved in poly(A)-dependent rRNA catabolic process","type":"related"}],"termid":"GO:0098812"}


id: PBO:0078844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily A member 1","termid":"PBO:0078844"}


id: GO:0032341
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving aldosterone, a corticosteroid hormone that is produced by the zona glomerulosa of the adrenal cortex and regulates salt (sodium and potassium) and water balance.","definition_xrefs":["PMID:16527843"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular aldehyde metabolic process","termid":"GO:0006081"},{"relation_name":"is_a","term_name":"C21-steroid hormone metabolic process","termid":"GO:0008207"},{"relation_name":"is_a","term_name":"mineralocorticoid metabolic process","termid":"GO:0008212"},{"relation_name":"is_a","term_name":"primary alcohol metabolic process","termid":"GO:0034308"},{"relation_name":"is_a","term_name":"cellular ketone metabolic process","termid":"GO:0042180"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"aldosterone metabolic process","synonyms":[{"name":"aldosterone metabolism","type":"exact"}],"termid":"GO:0032341"}


id: PBO:0075374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRY-box transcription factor 11","termid":"PBO:0075374"}


id: PBO:0031874
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Deletion Bleomycin Sensitive","termid":"PBO:0031874"}


id: PBO:0050885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"indoleamine 2,3-dioxygenase 2","termid":"PBO:0050885"}


id: PBO:0059901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND1 pseudogene 24","termid":"PBO:0059901"}


id: PBO:0049209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate ionotropic receptor NMDA type subunit 2C","termid":"PBO:0049209"}


id: PBO:0061482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NRG1 intronic transcript 3","termid":"PBO:0061482"}


id: GO:0072021
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of an ascending thin limb over time, from its formation to the mature structure. The ascending thin limb is a segment of a nephron tubule lying in the inner medulla that is permeable to ions but not to water and has a simple epithelium; active transepithelial solute transport is absent.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron tubule development","termid":"GO:0072080"},{"relation_name":"part_of","term_name":"loop of Henle development","termid":"GO:0072070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ascending thin limb development","termid":"GO:0072021"}


id: PBO:0088349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hexitol dehydrogenase","termid":"PBO:0088349"}


id: PBO:0063626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"profilin 1 pseudogene 2","termid":"PBO:0063626"}


id: PBO:0077166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TLE family member 7","termid":"PBO:0077166"}


id: PBO:0034446
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_okadaic_acid","termid":"PBO:0034446"}


id: PR:O60124
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An exosome complex component RRP42 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04043","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome complex component rrp42 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16G5.10","secondary_identifiers":["UniProtKB:O60124"],"synonyms":[{"name":"Spom972h-EXOSC7","type":"exact"},{"name":"ribosomal RNA-processing protein 42 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60124"}


id: PBO:0050850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intercellular adhesion molecule 3","termid":"PBO:0050850"}


id: PBO:0079686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin family domain containing 1","termid":"PBO:0079686"}


id: GO:0018982
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving vanillin, an aromatic hydrocarbon which occurs naturally in black vanilla bean pods and can be obtained as a by-product of the pulp and paper industry by the oxidative breakdown of lignin.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular aldehyde metabolic process","termid":"GO:0006081"},{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"},{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"vanillin metabolic process","secondary_identifiers":["UM-BBD_pathwayID:van"],"synonyms":[{"name":"vanillic aldehyde metabolic process","type":"exact"},{"name":"vanillic aldehyde metabolism","type":"exact"},{"name":"vanillin metabolism","type":"exact"}],"termid":"GO:0018982"}


id: PBO:0044223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cortexin 3","termid":"PBO:0044223"}


id: GO:0050781
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,4,6-trichlorophenol + 2 H+ + 2 e- = 2,4-dichlorophenol + HCl.","definition_xrefs":["GOC:ai","PMID:12697029"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"ortho-trichlorophenol reductive dehalogenase activity","synonyms":[{"name":"2,4,6-TCP reductive dehalogenase activity","type":"exact"},{"name":"2,4,6-trichlorophenol reductive dehalogenase activity","type":"exact"}],"termid":"GO:0050781"}


id: GO:0002308
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a precursor cell type acquires the specialized features of a CD8-positive, alpha-beta cytotoxic T cell.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CD8-positive, alpha-beta T cell differentiation","termid":"GO:0043374"},{"relation_name":"is_a","term_name":"cytotoxic T cell differentiation","termid":"GO:0045065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CD8-positive, alpha-beta cytotoxic T cell differentiation","synonyms":[{"name":"CD8-positive, alpha-beta cytotoxic T cell development","type":"related"},{"name":"CD8-positive, alpha-beta cytotoxic T lymphocyte differentiation","type":"exact"},{"name":"CD8-positive, alpha-beta cytotoxic T-cell differentiation","type":"exact"},{"name":"CD8-positive, alpha-beta cytotoxic T-lymphocyte differentiation","type":"exact"}],"termid":"GO:0002308"}


id: PR:O42848
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl1602 gene.","definition_xrefs":["UniProtKB:O42848","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L16-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23A1.11","synonyms":[{"name":"Spom972h-rpl1602","type":"exact"}],"termid":"PR:O42848"}


id: PBO:0048047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"follistatin like 5","termid":"PBO:0048047"}


id: GO:0018134
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of a peptidyl serine-peptidyl glycine cross-link by the condensation of a serine hydroxyl with the carbonyl of the preceding residue and alpha-beta dehydrogenation.","definition_xrefs":["RESID:AA0240"],"gene_count":0,"genotype_count":0,"name":"obsolete peptide cross-linking via glycine oxazolecarboxylic acid (obsolete GO:0018134)","termid":"GO:0018134"}


id: PBO:0070591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 57","termid":"PBO:0070591"}


id: GO:0019942
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by covalent attachment of the ubiquitin-like protein NEDD8 (RUB1) to the target protein.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete NEDD8 class-dependent protein catabolic process (obsolete GO:0019942)","synonyms":[{"name":"NEDD8 class-dependent protein breakdown","type":"exact"},{"name":"NEDD8 class-dependent protein catabolic process","type":"exact"},{"name":"NEDD8 class-dependent protein catabolism","type":"exact"},{"name":"NEDD8 class-dependent protein degradation","type":"exact"},{"name":"RUB1-dependent protein catabolic process","type":"exact"},{"name":"RUB1-dependent protein catabolism","type":"exact"},{"name":"RUB1-dependent protein degradation","type":"exact"}],"termid":"GO:0019942"}


id: PBO:0078339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (CTC) 5-1","termid":"PBO:0078339"}


id: FYPO:0001711
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of iron-sulfur cluster binding by a gene product (usually a protein) in a mutant is stabilized, i.e. interactions between the iron-sulfur cluster and the gene product do not last as long as in wild type under any given set of conditions. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal iron-sulfur cluster binding","termid":"FYPO:0001709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"destabilized iron-sulfur cluster binding","synonyms":[{"name":"decreased duration of iron-sulfur cluster binding","type":"exact"},{"name":"destabilised iron-sulfur cluster binding","type":"exact"},{"name":"destabilized iron-sulphur cluster binding","type":"exact"}],"termid":"FYPO:0001711"}


id: PBO:0003606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial lipoic acid synthetase Lip5 (predicted)","termid":"PBO:0003606"}


id: FYPO:0006390
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which a cell contains more than one meiotic spindle during one or both meiotic nuclear divisions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic spindle","termid":"FYPO:0000734"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002399","FYPO:0000054","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000120"],"is_obsolete":false,"name":"multiple meiotic spindles","synonyms":[{"name":"additional meiotic spindles present","type":"exact"},{"name":"extra meiotic spindles","type":"exact"},{"name":"increased number of meiotic spindles","type":"exact"},{"name":"meiotic spindles present in greater numbers","type":"exact"},{"name":"multiple spindles during meiosis","type":"exact"}],"termid":"FYPO:0006390"}


id: FYPO:0006805
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a galactosyltransferase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0001985","FYPO:0000661","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"abnormal galactosyltransferase activity","termid":"FYPO:0006805"}


id: PATO:0000819
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000819 quantity (obsolete PATO:0000819)","termid":"PATO:0000819"}


id: GO:0014714
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process, taking place in the head, whereby the developmental fate of a cell becomes restricted such that it will develop into a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.","definition_xrefs":["CL:0000056","GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myoblast fate commitment","termid":"GO:0048625"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myoblast fate commitment in head","termid":"GO:0014714"}


id: PBO:0034572
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_telomerase_RNA_reverse_transcriptase_activity","termid":"PBO:0034572"}


id: GO:0150173
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of phosphatidylcholine metabolic process.","definition_xrefs":["GOC:aruk","PMID:30074985","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phosphatidylcholine metabolic process","termid":"GO:0150172"},{"relation_name":"is_a","term_name":"positive regulation of phospholipid metabolic process","termid":"GO:1903727"},{"relation_name":"positively_regulates","term_name":"phosphatidylcholine metabolic process","termid":"GO:0046470"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"positive regulation of phosphatidylcholine metabolic process","termid":"GO:0150173"}


id: GO:0030137
data:
  {"annotated_genes":["SJAG_04402","SJAG_01508","SJAG_04569","SJAG_01285","SJAG_01927","SJAG_03368","SJAG_04391","SJAG_02482","SJAG_04070","SJAG_04474","SJAG_00192","SJAG_02234","SJAG_04002"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[87746,89269,95637,110237],"is_not":false,"summary":null,"term":"GO:0030137"},{"annotations":[99387,113470,103231,94585,94676,89353,112469,100237,109859],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030126"}]},"cv_name":"cellular_component","definition":"A vesicle with a coat formed of the COPI coat complex proteins. COPI-coated vesicles are found associated with Golgi membranes at steady state, are involved in Golgi to endoplasmic reticulum (retrograde) vesicle transport, and possibly also in intra-Golgi transport.","definition_xrefs":["PMID:11252894","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi-associated vesicle","termid":"GO:0005798"},{"relation_name":"is_a","term_name":"coated vesicle","termid":"GO:0030135"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00192":null,"SJAG_01285":null,"SJAG_01508":null,"SJAG_01927":null,"SJAG_02234":null,"SJAG_02482":null,"SJAG_03368":null,"SJAG_04002":null,"SJAG_04070":null,"SJAG_04391":null,"SJAG_04402":null,"SJAG_04474":null,"SJAG_04569":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"COPI-coated vesicle","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"coatomer","type":"related"}],"termid":"GO:0030137","terms_by_termid":{"GO:0030126":null,"GO:0030137":null}}


id: PBO:0044641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decapping enzyme, scavenger","termid":"PBO:0044641"}


id: PBO:0111764
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rrm RNA recognition motif","termid":"PBO:0111764"}


id: PBO:0052914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 13-6, pseudogene","termid":"PBO:0052914"}


id: PBO:0030358
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cytokinesis_during_cellular_hyperosmotic_response","termid":"PBO:0030358"}


id: PBO:0061197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nitric oxide associated 1","termid":"PBO:0061197"}


id: PATO:0001888
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a liquid inhering in a bearer by virtue of the bearer's ability to mix with (dissolve in) another liquid.","definition_xrefs":["Chemicool:Chemicool"],"direct_ancestors":[{"relation_name":"is_a","term_name":"quality of a liquid","termid":"PATO:0001548"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"miscibility","termid":"PATO:0001888"}


id: GO:0002827
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of a T-helper 1 type immune response.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains","termid":"GO:0002824"},{"relation_name":"is_a","term_name":"regulation of T-helper 1 type immune response","termid":"GO:0002825"},{"relation_name":"positively_regulates","term_name":"T-helper 1 type immune response","termid":"GO:0042088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of T-helper 1 type immune response","synonyms":[{"name":"activation of T-helper 1 type immune response","type":"narrow"},{"name":"stimulation of T-helper 1 type immune response","type":"narrow"},{"name":"up regulation of T-helper 1 type immune response","type":"exact"},{"name":"up-regulation of T-helper 1 type immune response","type":"exact"},{"name":"upregulation of T-helper 1 type immune response","type":"exact"}],"termid":"GO:0002827"}


id: PBO:0056125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LysM domain containing 2","termid":"PBO:0056125"}


id: PBO:0005433
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"previously annotated as Med9","termid":"PBO:0005433"}


id: PR:P26659
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A TFIIH basal transcription factor complex helicase XPD subunit that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00261","PANTHER:PTHR11472:SF1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair helicase rad15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1D4.12","secondary_identifiers":["UniProtKB:P26659"],"synonyms":[{"name":"DNA repair helicase RAD3 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ERCC2","type":"exact"},{"name":"protein rhp3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P26659"}


id: PBO:0090372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane P-type ATPase, calcium transporting Pmr1","termid":"PBO:0090372"}


id: PR:P79051
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rhp16 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P79051"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent helicase rhp16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC330.01c","synonyms":[{"name":"DNA repair protein rhp16 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RAD16 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rhp16","type":"exact"}],"termid":"PR:P79051"}


id: GO:0035835
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of an indole alkaloid, an alkaloid containing an indole skeleton.","definition_xrefs":["GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkaloid biosynthetic process","termid":"GO:0009821"},{"relation_name":"is_a","term_name":"indole alkaloid metabolic process","termid":"GO:0035834"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"indole alkaloid biosynthetic process","synonyms":[{"name":"indole alkaloid anabolism","type":"exact"},{"name":"indole alkaloid biosynthesis","type":"exact"},{"name":"indole alkaloid formation","type":"exact"},{"name":"indole alkaloid synthesis","type":"exact"}],"termid":"GO:0035835"}


