# terms

id: PBO:0089799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Tma23","termid":"PBO:0089799"}


id: PBO:0042581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine dioxygenase type 1","termid":"PBO:0042581"}


id: FYPO:0005532
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 16 of histone H4 is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H4 acetylation during vegetative growth","termid":"FYPO:0002364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0002494","FYPO:0002274","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal histone H4-K16 acetylation during vegetative growth","synonyms":[{"name":"abnormal histone H4-K16 acetylation during mitotic cell cycle","type":"related"},{"name":"abnormal histone H4K16 acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0005532"}


id: PBO:0086746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; potential Cdc28p substrate; null mutant displays increased resistance to antifungal agents gliotoxin, cycloheximide and H2O2","termid":"PBO:0086746"}


id: PBO:0073083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase complex assembly factor 3","termid":"PBO:0073083"}


id: PR:Q9HDW6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- vma5 gene.","definition_xrefs":["UniProtKB:Q9HDW6","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-type proton ATPase subunit C (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB2B4.05","synonyms":[{"name":"Spom972h-vma5","type":"exact"},{"name":"V-ATPase subunit C (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"vacuolar proton pump subunit C (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9HDW6"}


id: GO:0034850
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: isooctane + 1/2 O2 = 2,4,4-trimethyl-1-pentanol.","definition_xrefs":["UM-BBD_reactionID:r1269"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)","termid":"GO:0016703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"isooctane monooxygenase activity","secondary_identifiers":["EC:1.13.12.-"],"termid":"GO:0034850"}


id: MOD:00448
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with an N-acetylaminoglucose group through a glycosidic bond.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetylaminoglucosylated","termid":"MOD:00733"},{"relation_name":"is_a","term_name":"N-acetylaminohexosylated residue","termid":"MOD:01673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"N-acetylaminoglucosylated residue","synonyms":[{"name":"GlcNAcRes","type":"exact"},{"name":"HexNAc","type":"related"}],"termid":"MOD:00448"}


id: PBO:0054145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1512","termid":"PBO:0054145"}


id: MOD:00529
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod N-linked glycosylation","definition_xrefs":["RESID:AA0151#var","Unimod:161"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N4-glycosyl-L-asparagine","termid":"MOD:00160"},{"relation_name":"is_a","term_name":"complex glycosylation","termid":"MOD:00725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"Hex3HexNAc2P1 N4-glycosylated asparagine","synonyms":[{"name":"Hex(3)HexNAc(2)P(1)","type":"related"},{"name":"Hex3HexNAc2P1","type":"related"}],"termid":"MOD:00529"}


id: PATO:0001800
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A composition quality inhering in an bearer by virtue of the quantities or relative ratios of water of the inhering entity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"composition","termid":"PATO:0000025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"water composition","termid":"PATO:0001800"}


id: PBO:0002086
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5.4.99.5","termid":"PBO:0002086"}


id: GO:0070466
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha2-beta1 integrin complex bound to a type VI collagen triple helix containing an alpha3(VI) chain.","definition_xrefs":["PMID:8387021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"alpha2-beta1 integrin-alpha3(VI) complex","synonyms":[{"name":"ITGA2-ITGB1-COL6A3 complex","type":"narrow"}],"termid":"GO:0070466"}


id: GO:0045101
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Glial fibrillary acidic protein forms filaments in the glial cells that surround neurons and in astrocytes.","definition_xrefs":["ISBN:0716731363"],"gene_count":0,"genotype_count":0,"name":"obsolete glial fibrillary acidic protein (obsolete GO:0045101)","synonyms":[{"name":"GFAP","type":"exact"},{"name":"glial fibrillary acidic protein","type":"exact"}],"termid":"GO:0045101"}


id: PBO:0025453
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast cancer","termid":"PBO:0025453"}


id: GO:1903434
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of constitutive secretory pathway.","definition_xrefs":["GOC:als","GOC:TermGenie","PMID:22899725","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of exocytosis","termid":"GO:0045920"},{"relation_name":"is_a","term_name":"regulation of constitutive secretory pathway","termid":"GO:1903433"},{"relation_name":"negatively_regulates","term_name":"constitutive secretory pathway","termid":"GO:0045054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"negative regulation of constitutive secretory pathway","synonyms":[{"name":"down regulation of constitutive secretory pathway","type":"exact"},{"name":"down-regulation of constitutive secretory pathway","type":"exact"},{"name":"downregulation of constitutive secretory pathway","type":"exact"},{"name":"inhibition of constitutive secretory pathway","type":"narrow"}],"termid":"GO:1903434"}


id: MOD:01175
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively results from forming an adduct between a cysteine residue and the tetrapyrrole compound phycourobilin.","definition_xrefs":["PubMed:1903388","PubMed:3838747","RESID:AA0427","PubMed:3208761"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tetrapyrrole modified residue","termid":"MOD:00700"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-phycourobilin-L-cysteine","synonyms":[{"name":"(2S,3R,16R)-18-ethenyl-3-[(1R)-1-([(R)-2-amino-2-carboxyethyl]sulfanyl)ethyl]-8,12-bis(2-carboxyethyl)-2,7,13,17-tetramethyl-4,5,15,16-tetrahydrobiline-1,19(21H,22H,24H)-dione","type":"exact"},{"name":"18-ethenyl-3-[1-(2-amino-2-carboxyethylsulfanyl)ethyl]-2,3,15,16-dihydro-2,7,13,17-tetramethyl-1,19-dioxo-(21H,22H,24H)-bilin-8,12-dipropanoic acid","type":"exact"},{"name":"BINDING Phycourobilin chromophore (covalent; via 1 link)","type":"exact"},{"name":"PUB","type":"exact"},{"name":"PUBCys","type":"exact"},{"name":"S-phycourobilin-L-cysteine","type":"exact"},{"name":"phycourobilin cysteine adduct","type":"exact"}],"termid":"MOD:01175"}


id: GO:0035666
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to a toll-like receptor where the TRIF adaptor mediates transduction of the signal. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate an innate immune response.","definition_xrefs":["GOC:BHF","PMID:12855817"],"direct_ancestors":[{"relation_name":"is_a","term_name":"MyD88-independent toll-like receptor signaling pathway","termid":"GO:0002756"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"TRIF-dependent toll-like receptor signaling pathway","synonyms":[{"name":"TRIF-dependent TLR signaling pathway","type":"exact"},{"name":"TRIF-dependent toll-like receptor signalling pathway","type":"exact"},{"name":"Toll/IL-1 receptor (TIR) domain-containing adaptor-dependent TLR signaling pathway","type":"exact"}],"termid":"GO:0035666"}


id: PBO:0062150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily F member 29","termid":"PBO:0062150"}


id: PBO:0091175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N alpha-acetylation related protein Nat2","termid":"PBO:0091175"}


id: PBO:0084428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Major stress-induced structural GPI-cell wall glycoprotein; associates with translating ribosomes, possible role in mitochondrial genome maintenance; ORF contains two distinct variable minisatellites; SED1 has a paralog, SPI1, that arose from the whole genome duplication","termid":"PBO:0084428"}


id: GO:0030603
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + oxaloacetate = acetate + H+ + oxalate.","definition_xrefs":["RHEA:24432","EC:3.7.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances","termid":"GO:0016823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"oxaloacetase activity","secondary_identifiers":["MetaCyc:OXALOACETASE-RXN","KEGG_REACTION:R00338"],"synonyms":[{"name":"oxalacetic hydrolase activity","type":"related"},{"name":"oxaloacetate acetylhydrolase activity","type":"related"}],"termid":"GO:0030603"}


id: PBO:0078751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA methyltransferase 12 homolog","termid":"PBO:0078751"}


id: PBO:0031851
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_export_from_nucleus","termid":"PBO:0031851"}


id: PBO:0053195
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine zipper and EF-hand containing transmembrane protein 1 pseudogene 3","termid":"PBO:0053195"}


id: PBO:0040678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCAR3 adaptor protein, NSP family member","termid":"PBO:0040678"}


id: FYECO:0000209
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which biochanin A (BCA) was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ biochanin A","synonyms":[{"name":"BCA added","type":"exact"}],"termid":"FYECO:0000209"}


id: MOD:01866
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces the N6-amino hydrogen atom of a lysine residue with the Applied Biosystems mTRAQ light reporter+balance group.","definition_xrefs":["OMSSA:209","Unimod:888#K"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mTRAQ light reporter+balance reagent acylated residue","termid":"MOD:01864"},{"relation_name":"is_a","term_name":"N6-acylated L-lysine","termid":"MOD:01875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"mTRAQ light reporter+balance reagent N6-acylated lysine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems mTRAQ(TM) reagent","type":"related"},{"name":"mTRAQ light","type":"related"},{"name":"mTRAQ light on K","type":"exact"}],"termid":"MOD:01866"}


id: PBO:0063248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin alpha 13","termid":"PBO:0063248"}


id: GO:0034212
data:
  {"annotated_genes":["SJAG_02990","SJAG_01826","SJAG_04179","SJAG_02773","SJAG_00676","SJAG_02165","SJAG_04131","SJAG_04631","SJAG_03546","SJAG_01204","SJAG_02571","SJAG_03537","SJAG_02726"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84180],"is_not":false,"summary":null,"term":"GO:0034212"},{"annotations":[108754],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004402"},{"annotations":[114598],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043998"},{"annotations":[87556],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010484"},{"annotations":[87557,86920],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036408"},{"annotations":[87558],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043993"},{"annotations":[95092],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044016"},{"annotations":[105445,105446],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032931"},{"annotations":[87559],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043992"},{"annotations":[114599],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010485"},{"annotations":[84621],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043997"},{"annotations":[95093],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046972"},{"annotations":[84622],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043995"},{"annotations":[84623],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043996"},{"annotations":[111435,114046,99704,106534],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004596"},{"annotations":[85570],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990190"},{"annotations":[114600,85571],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990189"}]},"cv_name":"molecular_function","definition":"Catalysis of the acetylation of an amino acid residue of a peptide or protein, according to the reaction: acetyl-CoA + peptide = CoA + N-acetylpeptide.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetyltransferase activity","termid":"GO:0008080"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00676":null,"SJAG_01204":null,"SJAG_01826":null,"SJAG_02165":null,"SJAG_02571":null,"SJAG_02726":null,"SJAG_02773":null,"SJAG_02990":null,"SJAG_03537":null,"SJAG_03546":null,"SJAG_04131":null,"SJAG_04179":null,"SJAG_04631":null},"genotype_count":0,"in_subsets":["mf_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016746","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"peptide N-acetyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-3371554","Reactome:R-HSA-9760081"],"termid":"GO:0034212","terms_by_termid":{"GO:0004402":null,"GO:0004596":null,"GO:0010484":null,"GO:0010485":null,"GO:0032931":null,"GO:0034212":null,"GO:0036408":null,"GO:0043992":null,"GO:0043993":null,"GO:0043995":null,"GO:0043996":null,"GO:0043997":null,"GO:0043998":null,"GO:0044016":null,"GO:0046972":null,"GO:1990189":null,"GO:1990190":null}}


id: GO:0061604
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: [Molybdopterin-synthase sulfur-carrier protein]-Gly-Gly-AMP + [cysteine desulfurase]-S-sulfanyl-L-cysteine = AMP [molybdopterin-synthase sulfur-carrier protein]-Gly-NH-CH(2)-C(O)SH + cysteine desulfurase.","definition_xrefs":["PMID:18154309","PMID:22370186","GOC:dph","EC:2.8.1.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfurtransferase activity","termid":"GO:0016783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016782","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"molybdopterin-synthase sulfurtransferase activity","secondary_identifiers":["RHEA:48612"],"termid":"GO:0061604"}


id: GO:0033474
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of an indole-3-acetic acid conjugate, a form of indoleacetic acid covalently bound to another molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxin biosynthetic process","termid":"GO:0009851"},{"relation_name":"is_a","term_name":"indoleacetic acid conjugate metabolic process","termid":"GO:0033473"},{"relation_name":"is_a","term_name":"indole-containing compound biosynthetic process","termid":"GO:0042435"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"indoleacetic acid conjugate biosynthetic process","synonyms":[{"name":"IAA conjugate biosynthetic process","type":"exact"},{"name":"indole acetic acid conjugate biosynthesis","type":"exact"},{"name":"indole acetic acid conjugate biosynthetic process","type":"exact"},{"name":"indoleacetic acid conjugate anabolism","type":"exact"},{"name":"indoleacetic acid conjugate biosynthesis","type":"exact"},{"name":"indoleacetic acid conjugate formation","type":"exact"},{"name":"indoleacetic acid conjugate synthesis","type":"exact"}],"termid":"GO:0033474"}


id: PBO:0077159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TLE1 divergent transcript","termid":"PBO:0077159"}


id: FYPO:0001645
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of one protein to another occurs to a lower extent than normal. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein-protein interaction","termid":"FYPO:0000704"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000702","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"decreased protein-protein interaction","secondary_identifiers":["FYPO:0004636"],"synonyms":[{"name":"decreased protein binding","type":"exact"},{"name":"reduced protein-protein interaction","type":"exact"}],"termid":"FYPO:0001645"}


id: GO:0005038
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete death receptor interacting protein activity (obsolete GO:0005038)","synonyms":[{"name":"death receptor interacting protein activity","type":"exact"}],"termid":"GO:0005038"}


id: PBO:0074242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 52 member 2","termid":"PBO:0074242"}


id: PBO:0042463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle associated 4","termid":"PBO:0042463"}


id: PBO:0053867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1142","termid":"PBO:0053867"}


id: PBO:0060249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYCL proto-oncogene, bHLH transcription factor","termid":"PBO:0060249"}


id: PBO:0066010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RALY antisense RNA 1","termid":"PBO:0066010"}


id: GO:0060888
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The pattern specification process that results in the subdivision of the epidermis of the limb in space to define a volume in which specific patterns of basal cell, spinous cell and granular cells will differentiate giving rise to the layers of the limb epidermis.","definition_xrefs":["GOC:sdb_2009","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regionalization","termid":"GO:0003002"},{"relation_name":"is_a","term_name":"limb epidermis development","termid":"GO:0060887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"limb epidermis stratification","termid":"GO:0060888"}


id: PBO:0075076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 126","termid":"PBO:0075076"}


id: PBO:0011103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AdoMet dependent proline dimethyltransferase involved in translation Tae1 (predicted)","termid":"PBO:0011103"}


id: PBO:0074279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"slit guidance ligand 1","termid":"PBO:0074279"}


id: PBO:0089306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMARCAD1 family ATPase Fft1","termid":"PBO:0089306"}


id: PBO:0046492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ETS transcription factor ERG","termid":"PBO:0046492"}


id: PBO:0046815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid 2-hydroxylase","termid":"PBO:0046815"}


id: PBO:0090720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic ATP-dependent RNA helicase Dbp5","termid":"PBO:0090720"}


id: PBO:0029569
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_small_vegetative_cell_population_(obsolete_FYPO:0002152)","termid":"PBO:0029569"}


id: GO:0090141
data:
  {"annotated_genes":["SJAG_01212"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104994],"is_not":false,"summary":null,"term":"GO:0090141"}]},"cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of mitochondrial fission. Mitochondrial fission is the division of a mitochondrion within a cell to form two or more separate mitochondrial compartments.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organelle organization","termid":"GO:0010638"},{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"regulation of mitochondrial fission","termid":"GO:0090140"},{"relation_name":"positively_regulates","term_name":"mitochondrial fission","termid":"GO:0000266"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01212":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007005"},{"rel_name":"positively_regulates","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007005","GO:0008150"],"is_obsolete":false,"name":"positive regulation of mitochondrial fission","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of mitochondrial division","type":"exact"}],"termid":"GO:0090141","terms_by_termid":{"GO:0090141":null}}


id: RO:0002328
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally_related_to","termid":"RO:0002328"}


id: GO:0016322
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmentally regulated remodeling of neuronal projections such as pruning to eliminate the extra dendrites and axons projections set up in early stages of nervous system development.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron maturation","termid":"GO:0042551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuron remodeling","synonyms":[{"name":"axon pruning","type":"narrow"},{"name":"neuron remodelling","type":"exact"},{"name":"neuronal remodeling","type":"exact"}],"termid":"GO:0016322"}


id: GO:0102922
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: baccatin III + (3R)-3-amino-3-phenylpropanoyl-CoA = N-debenzoyl-(3'-RS)-2'-deoxytaxol + coenzyme A.","definition_xrefs":["EC:2.3.1.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016746","GO:0003824"],"is_obsolete":false,"name":"phenylpropanoyltransferase activity","secondary_identifiers":["RHEA:42488","MetaCyc:RXN-8857"],"termid":"GO:0102922"}


id: PBO:0064160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group IIE","termid":"PBO:0064160"}


id: PBO:0083690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Enzyme of 'de novo' purine biosynthesis; contains both 5-aminoimidazole-4-carboxamide ribonucleotide transformylase and inosine monophosphate cyclohydrolase activities; ADE16 has a paralog, ADE17, that arose from the whole genome duplication; ade16 ade17 mutants require adenine and histidine","termid":"PBO:0083690"}


id: PBO:0027717
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_level_of_transport_gene_mRNA_during_vegetative_growth","termid":"PBO:0027717"}


id: GO:0102444
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: isorhamnetin + S-adenosyl-L-methionine = 3,3'-dimethylquercetin + S-adenosyl-L-homocysteine.","definition_xrefs":["GOC:pz","EC:2.1.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016741"],"is_obsolete":false,"name":"isorhamnetin 3-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-13929"],"termid":"GO:0102444"}


id: FYPO:0007989
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which karyogamy involved in conjugation with cellular fusion does not occur because the nuclei fail to come in physical contact.","definition_xrefs":["PMID:25869666","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear congression during mating","termid":"FYPO:0003062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000301"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0000301","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abolished nuclear congression during mating","termid":"FYPO:0007989"}


id: PBO:0061640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nudix hydrolase 18","termid":"PBO:0061640"}


id: PBO:0042507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cadherin related family member 1","termid":"PBO:0042507"}


id: GO:0006781
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions that utilize succinyl-CoA in the synthesis of protoporphyrin IX.","definition_xrefs":["GOC:isa_complete","ISBN:0879010479"],"direct_ancestors":[{"relation_name":"is_a","term_name":"succinyl-CoA metabolic process","termid":"GO:0006104"},{"relation_name":"is_a","term_name":"porphyrin-containing compound biosynthetic process","termid":"GO:0006779"},{"relation_name":"part_of","term_name":"uroporphyrinogen III biosynthetic process","termid":"GO:0006780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"part_of","termid":"GO:0044281"},{"rel_name":"part_of","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281","GO:0033013","GO:0006790"],"is_obsolete":false,"name":"succinyl-CoA pathway","synonyms":[{"name":"biosynthesis of protoporphyrin IX via succinyl CoA","type":"exact"},{"name":"biosynthesis of protoporphyrin IX via succinyl-CoA","type":"exact"},{"name":"biosynthetic process of protoporphyrin IX via succinyl CoA","type":"exact"},{"name":"biosynthetic process of protoporphyrin IX via succinyl-CoA","type":"exact"},{"name":"succinyl CoA pathway","type":"exact"}],"termid":"GO:0006781"}


id: PBO:0001382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIN3 family co-repressor","termid":"PBO:0001382"}


id: FYPO:0001085
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a polysaccharide measured in a cell differs from normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell during vegetative growth","termid":"FYPO:0001323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"altered polysaccharide level during vegetative growth","synonyms":[{"name":"abnormal polysaccharide level during vegetative growth","type":"exact"},{"name":"altered cellular polysaccharide level during vegetative growth","type":"exact"},{"name":"altered polysaccharide level during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001085"}


id: GO:0045171
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A direct connection between the cytoplasm of two cells that is formed following the completion of cleavage furrow ingression during cell division. They are usually present only briefly prior to completion of cytokinesis. However, in some cases, such as the bridges between germ cells during their development, they become stabilised.","definition_xrefs":["PMID:9635420"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"intercellular bridge","termid":"GO:0045171"}


id: PR:000036302
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A G2/mitotic-specific cyclin cdc13 that is encoded in the genome of Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G2/mitotic-specific cyclin cdc13","termid":"PR:000037485"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G2/mitotic-specific cyclin cdc13 (Schizosaccharomyces pombe)","pombase_gene_id":"SPBC582.03","synonyms":[{"name":"SPBC582.03","type":"related"},{"name":"Spom-cdc13","type":"exact"}],"termid":"PR:000036302"}


id: GO:0030897
data:
  {"annotated_genes":["SJAG_01598","SJAG_05194","SJAG_03005","SJAG_05184","SJAG_00204","SJAG_01772","SJAG_04966","SJAG_00380"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[85885,96368,100742,86347,97237,96430,114478,90447],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902500"}]},"cv_name":"cellular_component","definition":"A multimeric protein complex that associates with the vacuolar membrane, late endosomal (multivesicular body) and lysosomal membranes. HOPS is a tethering complex involved in vesicle fusion.","definition_xrefs":["PMID:23645161","PMID:10944212"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"is_a","term_name":"vesicle tethering complex","termid":"GO:0099023"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00204":null,"SJAG_00380":null,"SJAG_01598":null,"SJAG_01772":null,"SJAG_03005":null,"SJAG_04966":null,"SJAG_05184":null,"SJAG_05194":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"HOPS complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0030897","terms_by_termid":{"GO:1902500":null}}


id: FYPO:0008053
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which an interaction between a protein and mRNA intron acceptor is decreased. One of the relevant gene products may be encoded by the mutated gene, or both the RNA and protein may be encoded by genes other than the mutated one.","direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein-RNA interaction","termid":"FYPO:0002134"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002131"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000707","FYPO:0002131"],"is_obsolete":false,"name":"decreased intron acceptor binding","synonyms":[{"name":"'decreased 3' intron binding'","type":"exact"}],"termid":"FYPO:0008053"}


id: GO:0072259
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a metanephric interstitial fibroblast over time, from its formation to the mature structure.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal interstitial fibroblast development","termid":"GO:0072141"},{"relation_name":"part_of","term_name":"metanephric interstitial fibroblast differentiation","termid":"GO:0072258"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric interstitial fibroblast development","synonyms":[{"name":"metanephros interstitial cell development","type":"exact"}],"termid":"GO:0072259"}


id: GO:0048363
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving the pectin component of mucilage.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pectin metabolic process","termid":"GO:0045488"},{"relation_name":"part_of","term_name":"mucilage metabolic process","termid":"GO:0010191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"mucilage pectin metabolic process","synonyms":[{"name":"mucilage pectin metabolism","type":"exact"}],"termid":"GO:0048363"}


id: PBO:0076763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosyl-DNA phosphodiesterase 2","termid":"PBO:0076763"}


id: MOD:01500
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a protein N-terminal with the Applied Biosystems iTRAQ4plex-116 reporter+balance group.","definition_xrefs":["Unimod:214#N-term","OMSSA:173"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iTRAQ4plex-116 reporter+balance reagent acylated residue","termid":"MOD:01499"},{"relation_name":"is_a","term_name":"iTRAQ4plex reporter+balance reagent acylated N-terminal","termid":"MOD:01711"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ4plex-116 reporter+balance reagent acylated N-terminal","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"Representative mass and accurate mass for 116 & 117","type":"related"},{"name":"iTRAQ","type":"related"},{"name":"iTRAQ116nterm","type":"exact"},{"name":"iTRAQ4plex","type":"related"}],"termid":"MOD:01500"}


id: PBO:0081841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF775 antisense RNA 1","termid":"PBO:0081841"}


id: PBO:0076321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptoporin","termid":"PBO:0076321"}


id: PBO:0041528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 16 open reading frame 90","termid":"PBO:0041528"}


id: PBO:0076331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SYS1-DBNDD2 readthrough (NMD candidate)","termid":"PBO:0076331"}


id: FYPO:0005551
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cleavage furrow is decreased.","definition_xrefs":["PMID:27082518","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to cell division site","termid":"FYPO:0002869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to cleavage furrow","synonyms":[{"name":"decreased protein localisation to cleavage furrow","type":"exact"},{"name":"decreased protein localization to cleavage furrow during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to cleavage furrow during vegetative growth","type":"exact"},{"name":"reduced protein localization to cleavage furrow","type":"exact"}],"termid":"FYPO:0005551"}


id: PBO:0071970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS6KB2 antisense RNA 1","termid":"PBO:0071970"}


id: GO:0075507
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Viral penetration into the host nucleus where the where a viral capsid docks on the cytoplasmic side of the nuclear pore complex (NPC) and ejects the viral genome through the pore into the nucleoplasm.","definition_xrefs":["PMID:22929056","VZ:989"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral penetration into host nucleus","termid":"GO:0075732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"entry of viral genome into host nucleus via docking of viral capsid to the nuclear pore complex and injection of viral genome","termid":"GO:0075507"}


id: PBO:0065081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich membrane anchor 1","termid":"PBO:0065081"}


id: SO:0001759
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A pseudogene, deactivated from original state by mutation, fixed in a population,where the ortholog in a reference species such as mouse remains functional.","definition_xrefs":["SO:ke","GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non_processed_pseudogene","termid":"SO:0001760"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unitary_pseudogene","synonyms":[{"name":"INSDC_feature:gene","type":"broad"},{"name":"INSDC_qualifier:unitary","type":"exact"},{"name":"disabled gene","type":"related"},{"name":"unitary pseudogene","type":"related"}],"termid":"SO:0001759"}


id: GO:0051976
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of lysine via the intermediates alpha-aminoadipic acid and N2-acetyl-alpha-aminoadipate. This pathway of prokaryotic lysine biosynthesis via alpha-aminoadipate was discovered in the hyper-thermophilic Gram-negative eubacterium Thermus thermophilus. The pathway proceeds as follows: alpha-ketoglutarate is converted to homocitrate, which is metabolized to 3-carboxyhex-2-enedioate and then homoisocitrate. This is then decarboxylated to form alpha-ketoadipate, which is then converted to alpha-aminoadipate. This undergoes acetylation, to form N2-acetyl-alpha-aminoadipate, and is then phosphorylated to give N2-acetyl-alpha-aminoadipyl-delta-phosphate. This is converted to N2-acetyl-alpha-aminoadipate semialdehyde, which is then converted to N2-acetyl-L-lysine. A final deacetylation reaction produces L-lysine.","definition_xrefs":["MetaCyc:PWY-3081"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysine biosynthetic process via aminoadipic acid","termid":"GO:0019878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"lysine biosynthetic process via alpha-aminoadipate and N2-acetyl-alpha-aminoadipate","synonyms":[{"name":"lysine biosynthesis via aminoadipic acid and N2-acetyl-alpha-aminoadipate","type":"exact"},{"name":"lysine biosynthetic process via aminoadipic acid and N2-acetyl-alpha-aminoadipate","type":"exact"}],"termid":"GO:0051976"}


id: GO:0090193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of glomerulus development, the progression of the glomerulus over time from its initial formation until its mature state. The glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney.","definition_xrefs":["GOC:dph","GOC:tb","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of kidney development","termid":"GO:0090184"},{"relation_name":"is_a","term_name":"regulation of glomerulus development","termid":"GO:0090192"},{"relation_name":"positively_regulates","term_name":"glomerulus development","termid":"GO:0032835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of glomerulus development","termid":"GO:0090193"}


id: PATO:0001194
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"responsive to","termid":"PATO:0000487"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyporesponsive to","synonyms":[{"name":"decreased responsivity","type":"exact"},{"name":"hyporesponsive","type":"exact"}],"termid":"PATO:0001194"}


id: PBO:0080528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WASH complex subunit 1","termid":"PBO:0080528"}


id: PBO:0048337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 48","termid":"PBO:0048337"}


id: GO:0099542
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling in either direction across the synaptic cleft, mediated by an endocannabinoid ligand.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trans-synaptic signaling by lipid","termid":"GO:0099541"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"trans-synaptic signaling by endocannabinoid","termid":"GO:0099542"}


id: PBO:0050111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1 pseudogene 21","termid":"PBO:0050111"}


id: PBO:0078494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ile (anticodon GAT) 1-1","termid":"PBO:0078494"}


id: FYPO:0007070
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which binding to a nuclear localization sequence (NLS) in a protein by a gene product (usually a protein) in a mutant does not occur. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"},{"relation_name":"is_a","term_name":"abolished molecular function","termid":"FYPO:0005446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"abolished NLS binding","synonyms":[{"name":"NLS binding abolished","type":"exact"},{"name":"abolished nuclear localisation sequence binding","type":"exact"},{"name":"abolished nuclear localization sequence binding","type":"exact"},{"name":"abolished nuclear localization signal binding","type":"exact"}],"termid":"FYPO:0007070"}


id: PBO:0081988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZSCAN16 antisense RNA 1","termid":"PBO:0081988"}


id: PBO:0005071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase Ria1 (predicted)","termid":"PBO:0005071"}


id: PBO:0036211
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-two_Mei2_nuclear_dots_present_in_cell","termid":"PBO:0036211"}


id: GO:0009773
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP.","definition_xrefs":["GOC:jid","ISBN:0716731363","ISBN:0816017360"],"direct_ancestors":[{"relation_name":"is_a","term_name":"photosynthetic electron transport chain","termid":"GO:0009767"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"part_of","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"photosynthetic electron transport in photosystem I","termid":"GO:0009773"}


id: GO:0043457
data:
  {"annotated_genes":["SJAG_00698","SJAG_02433","SJAG_01062","SJAG_02592"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90508,93759,107990,105811],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903715"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellular respiration, the enzymatic release of energy from organic compounds.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of generation of precursor metabolites and energy","termid":"GO:0043467"},{"relation_name":"regulates","term_name":"cellular respiration","termid":"GO:0045333"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00698":null,"SJAG_01062":null,"SJAG_02433":null,"SJAG_02592":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"regulation of cellular respiration","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0043457","terms_by_termid":{"GO:1903715":null}}


id: SO:0000052
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000052 assortment_derived_deficiency (obsolete SO:0000052)","synonyms":[{"name":"assortment-derived_deficiency","type":"related"}],"termid":"SO:0000052"}


id: PBO:0046390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E1A binding protein p400","termid":"PBO:0046390"}


id: PBO:0051100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 1-3","termid":"PBO:0051100"}


id: GO:0002598
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of antigen processing and presentation of lipid antigen via MHC class Ib.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation via MHC class Ib","termid":"GO:0002592"},{"relation_name":"regulates","term_name":"antigen processing and presentation of lipid antigen via MHC class Ib","termid":"GO:0048003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of antigen processing and presentation of lipid antigen via MHC class Ib","synonyms":[{"name":"regulation of lipid antigen processing and presentation via MHC class Ib","type":"exact"}],"termid":"GO:0002598"}


id: PBO:0088107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Uroporphyrinogen decarboxylase; catalyzes the fifth step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus; a hem12 mutant has phenotypes similar to patients with porphyria cutanea tarda","termid":"PBO:0088107"}


id: PBO:0039348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-1-microglobulin/bikunin precursor","termid":"PBO:0039348"}


id: MOD:01467
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:302#K","PubMed:15939799"],"direct_ancestors":[{"relation_name":"is_a","term_name":"menadione quinone derivative","termid":"MOD:00621"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"menadione quinone derivative - site K","synonyms":[{"name":"Menadione","type":"related"},{"name":"Menadione quinone derivative","type":"related"}],"termid":"MOD:01467"}


id: PBO:0085372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pH sensor molecule, component of the RIM101 pathway; has a role in cell wall construction and alkaline pH response; is glycosylated and phosphorylated; interacts with Dfg16p and Rim9p to form a pH-sensing complex; localization to the plasma membrane is dependent on Dfg16p and Rim9p; has similarity to A. nidulans PalH","termid":"PBO:0085372"}


id: PBO:0069289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 545, pseudogene","termid":"PBO:0069289"}


id: GO:0016127
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid catabolic process","termid":"GO:0006706"},{"relation_name":"is_a","term_name":"sterol metabolic process","termid":"GO:0016125"},{"relation_name":"is_a","term_name":"organic hydroxy compound catabolic process","termid":"GO:1901616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"sterol catabolic process","synonyms":[{"name":"sterol breakdown","type":"exact"},{"name":"sterol catabolism","type":"exact"},{"name":"sterol degradation","type":"exact"}],"termid":"GO:0016127"}


id: GO:0017024
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a class I myosin; myosin I heavy chains are single-headed, possess tails of various lengths, and do not self-associate into bipolar filaments.","definition_xrefs":["GOC:bf","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myosin binding","termid":"GO:0017022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0008092","GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"myosin I binding","termid":"GO:0017024"}


id: PBO:0047679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FLNB antisense RNA 1","termid":"PBO:0047679"}


id: GO:0009046
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the cleavage of the D-alanyl-D-alanine bond in (Ac)2-L-lysyl-D-alanyl-D-alanine.","definition_xrefs":["EC:3.4.17.14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metallocarboxypeptidase activity","termid":"GO:0004181"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0008233","GO:0003674","GO:0140096","GO:0003824"],"is_obsolete":false,"name":"zinc D-Ala-D-Ala carboxypeptidase activity","secondary_identifiers":["MetaCyc:3.4.17.14-RXN"],"synonyms":[{"name":"D-alanyl-D-alanine hydrolase activity","type":"related"},{"name":"D-alanyl-D-alanine-cleaving carboxypeptidase activity","type":"related"},{"name":"DD-carboxypeptidase","type":"broad"},{"name":"DD-carboxypeptidase-transpeptidase activity","type":"related"},{"name":"G enzyme","type":"related"},{"name":"Zn(2+) G peptidase activity","type":"related"},{"name":"Zn2+ G peptidase activity","type":"related"}],"termid":"GO:0009046"}


id: PBO:0028772
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_L-methionine_(R)-S-oxide","termid":"PBO:0028772"}


id: PBO:0070607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 75","termid":"PBO:0070607"}


id: PBO:0002475
data:
  {"annotation_feature_type":"gene","cv_name":"genome_org","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alternative splicing","termid":"PBO:0002475"}


id: GO:0071070
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha4-beta1 integrin complex bound to thrombospondin-2.","definition_xrefs":["PMID:11980922"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"alpha4-beta1 integrin-thrombospondin-2 complex","synonyms":[{"name":"ITGA4-ITGB1-THBS2 complex","type":"narrow"}],"termid":"GO:0071070"}


id: GO:0031390
data:
  {"annotated_genes":["SJAG_02182","SJAG_02373","SJAG_01010","SJAG_02610","SJAG_00729","SJAG_00806","SJAG_00272"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[85737,87848,90096,91397,92439,108376,108839],"is_not":false,"summary":null,"term":"GO:0031390"}]},"cv_name":"cellular_component","definition":"A heptameric complex related to replication factor C, which loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA and plays a vital role in chromosome cohesion. In Saccharomyces the subunits are known as Ctf18p, Rfc2p, Rfc3p, Rfc4p, Rfc5p, Dcc1p, and Ctf8p.","definition_xrefs":["PMID:14614842"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"part_of","term_name":"chromosome","termid":"GO:0005694"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00272":null,"SJAG_00729":null,"SJAG_00806":null,"SJAG_01010":null,"SJAG_02182":null,"SJAG_02373":null,"SJAG_02610":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575","GO:0005694"],"is_obsolete":false,"name":"Ctf18 RFC-like complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Ctf18-RFC","type":"exact"},{"name":"Ctf18-RLC","type":"exact"},{"name":"RFC (Ctf18)","type":"exact"}],"termid":"GO:0031390","terms_by_termid":{"GO:0031390":null}}


id: GO:0038194
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A G protein-coupled receptor signaling pathway initiated by thyroid-stimulating hormone (thyrotropin) binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:gap","PMID:10809230"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor signaling pathway","termid":"GO:0007186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"thyroid-stimulating hormone signaling pathway","synonyms":[{"name":"TSH signaling pathway","type":"exact"},{"name":"thyrotropin signaling pathway","type":"exact"}],"termid":"GO:0038194"}


id: PBO:0073750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 2 member 5","termid":"PBO:0073750"}


id: PBO:0067127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 173, pseudogene","termid":"PBO:0067127"}


id: PBO:0091374
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Multicopy suppressor of RAs","termid":"PBO:0091374"}


id: PBO:0080846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Y-box binding protein 1 pseudogene 10","termid":"PBO:0080846"}


id: PBO:0039121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"allograft inflammatory factor 1","termid":"PBO:0039121"}


id: PBO:0091146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"candidate S. pombe SPBC12C2.01c ortholog, syntenic position","termid":"PBO:0091146"}


id: PBO:0073942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 18 member B1","termid":"PBO:0073942"}


id: PBO:0048776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanosine monophosphate reductase","termid":"PBO:0048776"}


id: PBO:0011974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiamine diphosphokinase Tnr3/ Nudix hydrolase fusion protein","termid":"PBO:0011974"}


id: PBO:0044091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer/testis antigen family 45 member A11, pseudogene","termid":"PBO:0044091"}


id: PBO:0028463
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_kinase_activity_during_mitotic_interphase","termid":"PBO:0028463"}


id: PBO:0080842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Y-box binding protein 1 pseudogene 6","termid":"PBO:0080842"}


id: FYPO:0007623
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mitochondrial respiratory chain complex III assembly is decreased.","definition_xrefs":["PomBase:mah","GO:0034551"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased mitochondrial respiratory chain complex assembly","termid":"FYPO:0007122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased mitochondrial respiratory chain complex III assembly","synonyms":[{"name":"decreased mitochondrial respiratory chain complex III assembly during mitotic cell cycle","type":"related"},{"name":"decreased mitochondrial respiratory chain complex III assembly during vegetative growth","type":"exact"},{"name":"decreased respiratory chain complex III assembly","type":"exact"}],"termid":"FYPO:0007623"}


id: PBO:0056027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LSP1 pseudogene 5","termid":"PBO:0056027"}


id: PBO:0078044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 34","termid":"PBO:0078044"}


id: PATO:0002415
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Single lesion with expansion into surrounding tissue.","definition_xrefs":["PATOC:MPATH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localized","termid":"PATO:0000627"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"focally extensive","termid":"PATO:0002415"}


id: PBO:0057353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR548A1 host gene","termid":"PBO:0057353"}


id: PBO:0055248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2675","termid":"PBO:0055248"}


id: GO:0033743
data:
  {"annotated_genes":["SJAG_00365"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[102715],"is_not":false,"summary":null,"term":"GO:0033743"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: peptide-L-methionine + H2O + thioredoxin disulfide = peptide-L-methionine (R)-S-oxide + thioredoxin. Can act on oxidized methionine in peptide linkage with specificity for the R enantiomer. Thioredoxin disulfide is the oxidized form of thioredoxin.","definition_xrefs":["RHEA:24164","EC:1.8.4.12","GOC:mah","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor","termid":"GO:0016671"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00365":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"peptide-methionine (R)-S-oxide reductase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R07607","MetaCyc:1.8.4.12-RXN","Reactome:R-HSA-5676917","GO:0000318"],"synonyms":[{"name":"MsrB","type":"related"},{"name":"PilB","type":"related"},{"name":"SelR","type":"related"},{"name":"SelX","type":"related"},{"name":"methionine S-oxide reductase (R-form oxidizing) activity","type":"related"},{"name":"methionine S-oxide reductase activity","type":"broad"},{"name":"methionine sulfoxide reductase B activity","type":"narrow"},{"name":"methionine sulfoxide reductase activity","type":"broad"},{"name":"pMRsr","type":"related"},{"name":"pMSR","type":"related"},{"name":"peptide-methionine:thioredoxin-disulfide S-oxidoreductase [methionine (R)-S-oxide-forming] activity","type":"related"},{"name":"protein-methionine-R-oxide reductase activity","type":"exact"},{"name":"selenoprotein R","type":"related"}],"termid":"GO:0033743","terms_by_termid":{"GO:0033743":null}}


id: PBO:0056634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 13","termid":"PBO:0056634"}


id: GO:0047653
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-(+)-allantoin = (R)-(-)-allantoin.","definition_xrefs":["EC:5.1.99.3","RHEA:10804"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity","termid":"GO:0016854"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"allantoin racemase activity","secondary_identifiers":["MetaCyc:ALLANTOIN-RACEMASE-RXN","KEGG_REACTION:R03925"],"termid":"GO:0047653"}


id: PATO:0001834
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A fertility which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"fertile","termid":"PATO:0000955"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased fertility","synonyms":[{"name":"low fertility","type":"exact"}],"termid":"PATO:0001834"}


id: GO:0033812
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: succinyl-CoA + acetyl-CoA = CoA + 3-oxoadipyl-CoA.","definition_xrefs":["EC:2.3.1.174"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase activity","termid":"GO:0102923"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016746","GO:0003824"],"is_obsolete":false,"name":"3-oxoadipyl-CoA thiolase activity","secondary_identifiers":["MetaCyc:RXN-3641","RHEA:19481"],"synonyms":[{"name":"succinyl-CoA:acetyl-CoA C-succinyltransferase activity","type":"related"}],"termid":"GO:0033812"}


id: PBO:0087504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of GPI-GlcNAc transferase involved in synthesis of GlcNAc-PI; N-acetylglucosaminyl phosphatidylinositol (GlcNAc-PI) is the first intermediate in glycosylphosphatidylinositol (GPI) anchor synthesis; shares similarity with mammalian PIG-P","termid":"PBO:0087504"}


id: PBO:0110395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIPAL1 pseudogene 1","termid":"PBO:0110395"}


id: PBO:0035995
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_H2A_phosphorylation_at_subtelomere_during_vegetative_growth","termid":"PBO:0035995"}


id: PBO:0028578
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-septation_following_abnormal_chromosome_segregation,_with_binucleate_and_anucleate_compartment_formation","termid":"PBO:0028578"}


id: PBO:0053886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1166","termid":"PBO:0053886"}


id: SO:0001054
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A portion of a transposon, interrupted by the insertion of another element.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"repeat_component","termid":"SO:0000840"},{"relation_name":"part_of","term_name":"nested_transposon","termid":"SO:0001648"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transposon_fragment","synonyms":[{"name":"transposon fragment","type":"exact"}],"termid":"SO:0001054"}


id: GO:1902156
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of response to G1 DNA damage checkpoint signaling.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of response to DNA damage checkpoint signaling","termid":"GO:1902154"},{"relation_name":"is_a","term_name":"regulation of response to G1 DNA damage checkpoint signaling","termid":"GO:1902155"},{"relation_name":"positively_regulates","term_name":"response to G1 DNA damage checkpoint signaling","termid":"GO:0072432"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to G1 DNA damage checkpoint signaling","synonyms":[{"name":"activation of mitotic cell cycle G1/S transition DNA damage checkpoint effector process","type":"exact"},{"name":"activation of response to G1 DNA damage checkpoint signaling","type":"narrow"},{"name":"activation of response to mitotic cell cycle G1/S transition DNA damage checkpoint signaling","type":"exact"},{"name":"activation of response to signal involved in mitotic cell cycle G1/S transition DNA damage checkpoint","type":"exact"},{"name":"positive regulation of mitotic cell cycle G1/S transition DNA damage checkpoint effector process","type":"exact"},{"name":"positive regulation of response to mitotic cell cycle G1/S transition DNA damage checkpoint signaling","type":"exact"},{"name":"positive regulation of response to signal involved in mitotic cell cycle G1/S transition DNA damage checkpoint","type":"exact"},{"name":"up regulation of mitotic cell cycle G1/S transition DNA damage checkpoint effector process","type":"exact"},{"name":"up regulation of response to G1 DNA damage checkpoint signaling","type":"exact"},{"name":"up regulation of response to mitotic cell cycle G1/S transition DNA damage checkpoint signaling","type":"exact"},{"name":"up regulation of response to signal involved in mitotic cell cycle G1/S transition DNA damage checkpoint","type":"exact"},{"name":"up-regulation of mitotic cell cycle G1/S transition DNA damage checkpoint effector process","type":"exact"},{"name":"up-regulation of response to G1 DNA damage checkpoint signaling","type":"exact"},{"name":"up-regulation of response to mitotic cell cycle G1/S transition DNA damage checkpoint signaling","type":"exact"},{"name":"up-regulation of response to signal involved in mitotic cell cycle G1/S transition DNA damage checkpoint","type":"exact"},{"name":"upregulation of mitotic cell cycle G1/S transition DNA damage checkpoint effector process","type":"exact"},{"name":"upregulation of response to G1 DNA damage checkpoint signaling","type":"exact"},{"name":"upregulation of response to mitotic cell cycle G1/S transition DNA damage checkpoint signaling","type":"exact"},{"name":"upregulation of response to signal involved in mitotic cell cycle G1/S transition DNA damage checkpoint","type":"exact"}],"termid":"GO:1902156"}


id: GO:0002646
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of central tolerance induction.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of tolerance induction","termid":"GO:0002643"},{"relation_name":"regulates","term_name":"central tolerance induction","termid":"GO:0002508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of central tolerance induction","termid":"GO:0002646"}


id: PBO:0038480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily B member 5","termid":"PBO:0038480"}


id: GO:0035563
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of chromatin binding. Chromatin binding is the selective interaction with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.","definition_xrefs":["GOC:bf","PMID:20404130"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of chromatin binding","termid":"GO:0035561"},{"relation_name":"is_a","term_name":"positive regulation of binding","termid":"GO:0051099"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of chromatin binding","termid":"GO:0035563"}


id: GO:0003726
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: adenosine + H2O = inosine + NH3, in a double-stranded RNA molecule.","definition_xrefs":["RHEA:10120","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenosine deaminase activity","termid":"GO:0004000"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016810","GO:0016787"],"is_obsolete":false,"name":"double-stranded RNA adenosine deaminase activity","secondary_identifiers":["Reactome:R-HSA-77615","Reactome:R-HSA-77614","GO:0003971","EC:3.5.4.37"],"synonyms":[{"name":"double-stranded RNA specific editase activity","type":"related"}],"termid":"GO:0003726"}


id: PBO:0034152
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-biomechanically_related_to","termid":"PBO:0034152"}


id: PBO:0028631
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_U6_2'-O-snRNA_methylation","termid":"PBO:0028631"}


id: GO:0004053
data:
  {"annotated_genes":["SJAG_03398"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[93489,109316],"is_not":false,"summary":null,"term":"GO:0004053"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-arginine + H2O = L-ornithine + urea.","definition_xrefs":["EC:3.5.3.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03398":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016810","GO:0003674"],"is_obsolete":false,"name":"arginase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:20569","MetaCyc:ARGINASE-RXN","Reactome:R-HSA-70569","Reactome:R-HSA-452036"],"synonyms":[{"name":"L-arginase activity","type":"related"},{"name":"L-arginine amidinohydrolase activity","type":"related"},{"name":"arginine amidinase activity","type":"related"},{"name":"arginine transamidinase activity","type":"related"},{"name":"canavanase activity","type":"related"}],"termid":"GO:0004053","terms_by_termid":{"GO:0004053":null}}


id: PBO:0001907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial tryptophan-tRNA ligase Msw1 (predicted)","termid":"PBO:0001907"}


id: PR:Q10089
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC11D3.10 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C11D3.10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11D3.10","synonyms":[{"name":"Spom972h-SPAC11D3.10","type":"exact"}],"termid":"PR:Q10089"}


id: PBO:0069051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 297, pseudogene","termid":"PBO:0069051"}


id: PBO:0081037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCCH-type containing 13","termid":"PBO:0081037"}


id: PBO:0111896
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin bimC subfamily","termid":"PBO:0111896"}


id: PBO:0042719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell cycle exit and neuronal differentiation 1 pseudogene 1","termid":"PBO:0042719"}


id: PBO:0039143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylate kinase 2","termid":"PBO:0039143"}


id: GO:0071805
data:
  {"annotated_genes":["SJAG_04028","SJAG_04616","SJAG_02883","SJAG_04698","SJAG_01353","SJAG_04167","SJAG_02445","SJAG_03401"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57216,60862,66456,85488,93136],"is_not":false,"summary":null,"term":"GO:0071805"},{"annotations":[90353],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140141"},{"annotations":[108452],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097623"},{"annotations":[85678,93135],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990573"}]},"cv_name":"biological_process","definition":"A process in which a potassium ion is transported from one side of a membrane to the other.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"potassium ion transport","termid":"GO:0006813"},{"relation_name":"is_a","term_name":"monoatomic cation transmembrane transport","termid":"GO:0098655"},{"relation_name":"is_a","term_name":"inorganic cation transmembrane transport","termid":"GO:0098662"}],"gene_count":8,"genes_by_uniquename":{"SJAG_01353":null,"SJAG_02445":null,"SJAG_02883":null,"SJAG_03401":null,"SJAG_04028":null,"SJAG_04167":null,"SJAG_04616":null,"SJAG_04698":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"potassium ion transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["GO:0010163"],"synonyms":[{"name":"high affinity potassium ion import","type":"narrow"},{"name":"high affinity potassium ion uptake","type":"narrow"},{"name":"high-affinity potassium ion import","type":"narrow"},{"name":"high-affinity potassium ion uptake","type":"narrow"},{"name":"potassium ion membrane transport","type":"exact"}],"termid":"GO:0071805","terms_by_termid":{"GO:0071805":null,"GO:0097623":null,"GO:0140141":null,"GO:1990573":null}}


id: PBO:0044758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 42","termid":"PBO:0044758"}


id: GO:2001128
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a methane from a methylamine.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methanogenesis","termid":"GO:0015948"},{"relation_name":"is_a","term_name":"methylamine metabolic process","termid":"GO:0030416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"methane biosynthetic process from methylamine","termid":"GO:2001128"}


id: FYPO:0004353
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal during S phase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein phosphorylation during vegetative growth","termid":"FYPO:0001038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0001985","FYPO:0002494","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"increased protein phosphorylation during mitotic S phase","synonyms":[{"name":"increased protein phosphorylation during mitotic S phase during vegetative growth","type":"exact"},{"name":"increased protein phosphorylation during mitotic S-phase","type":"exact"},{"name":"increased protein/peptide phosphorylation during mitotic S phase","type":"exact"}],"termid":"FYPO:0004353"}


id: GO:2000448
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of macrophage migration inhibitory factor signaling pathway.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine-mediated signaling pathway","termid":"GO:0001961"},{"relation_name":"is_a","term_name":"regulation of macrophage migration inhibitory factor signaling pathway","termid":"GO:2000446"},{"relation_name":"positively_regulates","term_name":"macrophage migration inhibitory factor signaling pathway","termid":"GO:0035691"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of macrophage migration inhibitory factor signaling pathway","synonyms":[{"name":"positive regulation of MIF signaling pathway","type":"exact"},{"name":"positive regulation of macrophage migration inhibitory factor signalling pathway","type":"exact"}],"termid":"GO:2000448"}


id: PBO:0090173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone lysine H3-K37 methyltransferase Set7","termid":"PBO:0090173"}


id: GO:0140050
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of endocardial cushion to mesenchymal transition.","definition_xrefs":["GOC:rph","PMID:21778427","GOC:BHF","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cardiac epithelial to mesenchymal transition","termid":"GO:0062044"},{"relation_name":"is_a","term_name":"regulation of endocardial cushion to mesenchymal transition","termid":"GO:0140049"},{"relation_name":"negatively_regulates","term_name":"endocardial cushion to mesenchymal transition","termid":"GO:0090500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of endocardial cushion to mesenchymal transition","termid":"GO:0140050"}


id: GO:1902894
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of microRNA (miRNA) gene transcription.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:kmv","GOC:dph","PMID:24699545"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of DNA-templated transcription","termid":"GO:0045892"},{"relation_name":"is_a","term_name":"regulation of miRNA transcription","termid":"GO:1902893"},{"relation_name":"is_a","term_name":"negative regulation of miRNA metabolic process","termid":"GO:2000629"},{"relation_name":"negatively_regulates","term_name":"miRNA transcription","termid":"GO:0061614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006351","GO:0006355"],"is_obsolete":false,"name":"negative regulation of miRNA transcription","synonyms":[{"name":"down regulation of pri-miRNA transcription from RNA polymerase II promoter","type":"exact"},{"name":"down-regulation of pri-miRNA transcription from RNA polymerase II promoter","type":"exact"},{"name":"downregulation of pri-miRNA transcription from RNA polymerase II promoter","type":"exact"},{"name":"inhibition of pri-miRNA transcription from RNA polymerase II promoter","type":"narrow"},{"name":"negative regulation of miRNA gene transcription","type":"exact"},{"name":"negative regulation of microRNA gene transcription","type":"exact"},{"name":"negative regulation of pri-miRNA transcription by RNA polymerase II","type":"exact"},{"name":"negative regulation of pri-miRNA transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of primary miRNA gene transcription","type":"exact"}],"termid":"GO:1902894"}


id: GO:0044813
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The glycolytic fermentation beginning with the anaerobic conversion of glucose to pyruvate by the glycolytic pathway, continuing with pyruvate:ferredoxin oxidoreductase (PFOR) activity. This pathway is found in strict anaerobes such as Clostridia species.","definition_xrefs":["PMID:20692761","GOC:mengo_curators","PMID:20395274"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycolytic fermentation","termid":"GO:0019660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"glycolytic fermentation via PFOR pathway","secondary_identifiers":["MetaCyc:CENTFERM-PWY"],"termid":"GO:0044813"}


id: PBO:0048944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgi SNAP receptor complex member 2","termid":"PBO:0048944"}


id: GO:0102787
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pelargonidin 3-O-beta-D-glucoside + caffeoyl-CoA = pelargonidin 3-O-beta-D-caffeoylglucoside + coenzyme A.","definition_xrefs":["GOC:pz","EC:2.3.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"caffeoyl-CoA:pelargonidin-3-O-beta-D-glucoside-6''-O-acyltransferase activity","secondary_identifiers":["MetaCyc:RXN-7997"],"termid":"GO:0102787"}


id: FYPO:0006142
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the transition from G0 phase (quiescence) to G1 is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell cycle process","termid":"FYPO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal G0 to G1 transition","synonyms":[{"name":"normal exit from cell quiescence","type":"exact"}],"termid":"FYPO:0006142"}


id: GO:1901034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of L-glutamine import into cell.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of amino acid import across plasma membrane","termid":"GO:0010958"},{"relation_name":"is_a","term_name":"regulation of glutamine transport","termid":"GO:2000485"},{"relation_name":"regulates","term_name":"L-glutamine import across plasma membrane","termid":"GO:1903803"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of L-glutamine import across plasma membrane","synonyms":[{"name":"regulation of L-glutamine import","type":"broad"},{"name":"regulation of L-glutamine uptake","type":"exact"}],"termid":"GO:1901034"}


id: PBO:0064549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POM121 transmembrane nucleoporin like 11, pseudogene","termid":"PBO:0064549"}


id: PBO:0081359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 185 with LIM domain","termid":"PBO:0081359"}


id: GO:0072292
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of epithelial cells within a renal tubule that contributes to metanephric proximal tubule morphogenesis.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell migration involved in proximal tubule morphogenesis","termid":"GO:0072159"},{"relation_name":"is_a","term_name":"epithelial cell migration involved in metanephric nephron tubule morphogenesis","termid":"GO:0072290"},{"relation_name":"part_of","term_name":"metanephric proximal tubule morphogenesis","termid":"GO:0072288"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial cell migration involved in metanephric proximal tubule morphogenesis","termid":"GO:0072292"}


id: PR:P0CS92
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC959.06c gene.","definition_xrefs":["UniProtKB:P0CS92","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C959.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC959.06c","synonyms":[{"name":"Spom972h-SPAC959.06c","type":"exact"}],"termid":"PR:P0CS92"}


id: PR:Q9HDW8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glutaredoxin-related protein 5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01137","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monothiol glutaredoxin-5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB2B4.02","secondary_identifiers":["UniProtKB:Q9HDW8"],"synonyms":[{"name":"Spom972h-GLRX5","type":"exact"}],"termid":"PR:Q9HDW8"}


id: PBO:0039446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat and IBR domain containing 1","termid":"PBO:0039446"}


id: PBO:0066455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"REXO1 like 8, pseudogene","termid":"PBO:0066455"}


id: PBO:0047532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FGD5 antisense RNA 1","termid":"PBO:0047532"}


id: SO:0000588
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A self spliced intron.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"ribozymic","termid":"SO:0001186"},{"relation_name":"is_a","term_name":"intron","termid":"SO:0000188"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autocatalytically_spliced_intron","synonyms":[{"name":"INSDC_feature:ncRNA","type":"broad"},{"name":"INSDC_qualifier:autocatalytically_spliced_intron","type":"exact"},{"name":"autocatalytically spliced intron","type":"exact"}],"termid":"SO:0000588"}


id: PBO:0076025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine kinase 24","termid":"PBO:0076025"}


id: PBO:0004257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RSC complex subunit Rsc9","termid":"PBO:0004257"}


id: RO:0000301
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relation that holds between a neuron that is synapsed_to another neuron or a neuron that is connected indirectly to another by a chain of neurons, each synapsed_to the next.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_neural_circuit_with","termid":"RO:0000300"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"upstream_in_neural_circuit_with","termid":"RO:0000301"}


id: GO:0009292
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The introduction of genetic information into a cell to create a genetically different individual, without production of new individuals.","definition_xrefs":["PMID:26184597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process","termid":"GO:0009987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"horizontal gene transfer","synonyms":[{"name":"genetic exchange","type":"broad"},{"name":"genetic transfer","type":"exact"},{"name":"lateral gene transfer","type":"exact"}],"termid":"GO:0009292"}


id: PBO:0082652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of Shu complex (aka PCSS complex); Shu complex also includes Shu1, Csm2, Shu2, and promotes error-free DNA repair; promotes Rad51p filament assembly; Shu complex mediates inhibition of Srs2p function; Psy3p and Csm2p contain similar DNA-binding regions which work together to form a single DNA binding site; deletion of PSY3 results in a mutator phenotype; deletion increases sensitivity to anticancer drugs oxaliplatin and cisplatin but not mitomycin C","termid":"PBO:0082652"}


id: PBO:0054547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1947","termid":"PBO:0054547"}


id: PBO:0012261
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA Elimination Defective","termid":"PBO:0012261"}


id: PBO:0082274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Anchorage subunit of a-agglutinin of a-cells; highly O-glycosylated protein with N-terminal secretion signal and C-terminal signal for addition of GPI anchor to cell wall, linked to adhesion subunit Aga2p via two disulfide bonds; AGA1 has a paralog, FIG2, that arose from the whole genome duplication","termid":"PBO:0082274"}


id: GO:0032185
data:
  {"annotated_genes":["SJAG_01658","SJAG_03146","SJAG_00663","SJAG_00118","SJAG_01143","SJAG_04375","SJAG_00514"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106805],"is_not":false,"summary":null,"term":"GO:0032185"},{"annotations":[96234,100043],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000921"},{"annotations":[97887,93957,113119,86043],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031106"}]},"cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising septin complexes and their associated proteins.","definition_xrefs":["GOC:mah","GOC:dph","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeleton organization","termid":"GO:0007010"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00118":null,"SJAG_00514":null,"SJAG_00663":null,"SJAG_01143":null,"SJAG_01658":null,"SJAG_03146":null,"SJAG_04375":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007010","GO:0008150"],"is_obsolete":false,"name":"septin cytoskeleton organization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"septin cytoskeleton organisation","type":"exact"},{"name":"septin cytoskeleton organization and biogenesis","type":"related"}],"termid":"GO:0032185","terms_by_termid":{"GO:0000921":null,"GO:0031106":null,"GO:0032185":null}}


id: PBO:0091944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal cell surface protein, Kre9/Knh1 family, Knh2","termid":"PBO:0091944"}


id: PBO:0041072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BMP/retinoic acid inducible neural specific 1","termid":"PBO:0041072"}


id: GO:0061685
data:
  {"annotated_genes":["SJAG_04846"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[111811],"is_not":false,"summary":null,"term":"GO:0061685"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: diphthine methyl ester + H2O = diphthine + H+ + methanol.","definition_xrefs":["RHEA:42656","GOC:dph","PMID:24739148"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04846":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016787","GO:0016788","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"diphthine methylesterase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:3.1.1.97"],"termid":"GO:0061685","terms_by_termid":{"GO:0061685":null}}


id: GO:1990638
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a granulocyte colony-stimulating factor stimulus.","definition_xrefs":["PMID:9488469"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cytokine","termid":"GO:0034097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to granulocyte colony-stimulating factor","synonyms":[{"name":"response to G-CSF","type":"exact"}],"termid":"GO:1990638"}


id: GO:0036348
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-5-monosubstituted hydantoin = L-5-monosubstituted hydantoin.","definition_xrefs":["EC:5.1.99.5","InterPro:IPR015942"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity","termid":"GO:0016854"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"hydantoin racemase activity","secondary_identifiers":["KEGG_REACTION:R09704","MetaCyc:RXN-9781","RHEA:46624"],"termid":"GO:0036348"}


id: PBO:0029330
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H2A_phosphorylation","termid":"PBO:0029330"}


id: PBO:0027893
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-incomplete_mitotic_sister_chromatid_segregation,_with_unseparated_DNA_and_centromeric_DNA_dissociated_from_spindle","termid":"PBO:0027893"}


id: PBO:0060276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYH9 divergent transcript","termid":"PBO:0060276"}


id: FYPO:0007751
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a short spindle assembles during the first meiotic nuclear division, and may begin elongation, but does not elongate normally or completely, and collapses during prometaphase I. Upon collapse the spindle may break or shrink.","definition_xrefs":["PMID:32723864","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle collapse during meiosis I","termid":"FYPO:0007103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"spindle collapse during meiotic prometaphase I","synonyms":[{"name":"broken meiotic spindle during prometaphase I","type":"related"},{"name":"meiosis I spindle collapse during prometaphase","type":"exact"},{"name":"meiotic spindle breakage during prometaphase I","type":"exact"},{"name":"meiotic spindle collapse during prometaphase I","type":"exact"},{"name":"spindle collapse during prometaphase I","type":"exact"},{"name":"spindle collapse during prometaphase of meiosis I","type":"exact"}],"termid":"FYPO:0007751"}


id: PR:P87150
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC25H2.09 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87150"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MICOS complex subunit mic19 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC25H2.09","synonyms":[{"name":"Spom972h-SPBC25H2.09","type":"exact"}],"termid":"PR:P87150"}


id: PBO:0028845
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_Mmi1_focus","termid":"PBO:0028845"}


id: PBO:0077843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPD52 like 2","termid":"PBO:0077843"}


id: PBO:0064431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patatin like phospholipase domain containing 8","termid":"PBO:0064431"}


id: GO:0019135
data:
  {"annotated_genes":["SJAG_02285"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[92216],"is_not":false,"summary":null,"term":"GO:0019135"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: protein N6-(4-aminobutyl)-L-lysine + donor-H2 + O2 = protein N6-((R)-4-amino-2-hydroxybutyl)-L-lysine + acceptor + H2O.","definition_xrefs":["EC:1.14.99.29"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140096","GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"deoxyhypusine monooxygenase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:DEOXYHYPUSINE-MONOOXYGENASE-RXN","Reactome:R-HSA-204662","RHEA:14101"],"synonyms":[{"name":"DOHH activity","type":"related"},{"name":"deoxyhypusine dioxygenase activity","type":"related"},{"name":"deoxyhypusine hydroxylase activity","type":"exact"},{"name":"deoxyhypusine,hydrogen-donor:oxygen oxidoreductase (2-hydroxylating)","type":"related"}],"termid":"GO:0019135","terms_by_termid":{"GO:0019135":null}}


id: PBO:0066727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 24","termid":"PBO:0066727"}


id: GO:0071425
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of a hematopoietic stem cell population by cell division. A hematopoietic stem cell is a stem cell from which all cells of the lymphoid and myeloid lineages develop.","definition_xrefs":["GOC:mah","CL:0000037","GOC:add","GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stem cell proliferation","termid":"GO:0072089"},{"relation_name":"part_of","term_name":"hemopoiesis","termid":"GO:0030097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hematopoietic stem cell proliferation","synonyms":[{"name":"hemopoietic stem cell proliferation","type":"exact"}],"termid":"GO:0071425"}


id: PBO:0056655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 22","termid":"PBO:0056655"}


id: GO:0001811
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the rate of type I hypersensitivity, a type of inflammatory response.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of type I hypersensitivity","termid":"GO:0001810"},{"relation_name":"is_a","term_name":"negative regulation of hypersensitivity","termid":"GO:0002884"},{"relation_name":"is_a","term_name":"negative regulation of immunoglobulin mediated immune response","termid":"GO:0002890"},{"relation_name":"negatively_regulates","term_name":"type I hypersensitivity","termid":"GO:0016068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of type I hypersensitivity","synonyms":[{"name":"down regulation of type I hypersensitivity","type":"exact"},{"name":"down-regulation of type I hypersensitivity","type":"exact"},{"name":"downregulation of type I hypersensitivity","type":"exact"},{"name":"inhibition of type I hypersensitivity","type":"narrow"}],"termid":"GO:0001811"}


id: SO:0001135
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Left handed type II: A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees > phi > -20 degrees, +80 degrees > psi > +180 degrees. Residue(i+2): +20 degrees > phi > +140 degrees, -40 degrees > psi > +90 degrees.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta_turn","termid":"SO:0001133"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"beta_turn_left_handed_type_two","secondary_identifiers":["BS:00213"],"synonyms":[{"name":"beta turn left handed type two","type":"exact"},{"name":"beta_turn_iil","type":"exact"},{"name":"type II' beta turn","type":"exact"},{"name":"type II' turn","type":"exact"}],"termid":"SO:0001135"}


id: PBO:0016532
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae YHR072W","termid":"PBO:0016532"}


id: PBO:0053607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 640","termid":"PBO:0053607"}


id: PBO:0087074
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L36B; binds to 5.8 S rRNA; homologous to mammalian ribosomal protein L36, no bacterial homolog; RPL36B has a paralog, RPL36A, that arose from the whole genome duplication","termid":"PBO:0087074"}


id: PBO:0059273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L35 pseudogene 2","termid":"PBO:0059273"}


id: PBO:0088923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane associated ubiquitin-protein ligase E3, MARCH family","termid":"PBO:0088923"}


id: PBO:0002159
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"appears to be part of transcript of adjacent gene","termid":"PBO:0002159"}


id: PR:G2TRL8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPACUNK4.20 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRL8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein CUNK4.20 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPACUNK4.20","synonyms":[{"name":"Spom972h-SPACUNK4.20","type":"exact"}],"termid":"PR:G2TRL8"}


id: FYPO:0005568
data:
  {"alleles_by_uniquename":{"SJAG_00409:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00409","name":"gpd1delta","uniquename":"SJAG_00409:allele-1"},"SJAG_04280:allele-1":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115269],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000198"},{"annotations":[115619],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000026"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the establishment or maintenance of cell polarity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00409":null,"SJAG_04280":null},"genotype_count":2,"genotypes_by_uniquename":{"gpd1delta":{"display_name":"gpd1delta","display_uniquename":"gpd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00409:allele-1","expression":"Null"}]}]},"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"wee1-as8(T582G aa)","display_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]}},"in_subsets":["fypo_slim"],"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal cell polarity","references_by_uniquename":{"PMID:30664646":null,"PMID:37164017":null},"single_locus_annotated_genes":["SJAG_04280","SJAG_00409"],"single_locus_genotype_uniquenames":["wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","gpd1delta"],"synonyms":[{"name":"abnormal cell polarity process","type":"exact"},{"name":"abnormal establishment or maintenance of cell polarity","type":"exact"},{"name":"cell polarity defects","type":"exact"}],"termid":"FYPO:0005568","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000338":null,"FYPO:0000026":null,"FYPO:0000198":null,"FYPO_EXT:0000001":null}}


id: PBO:0027537
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-growth_auxotrophic_for_histidine_or_lysine","termid":"PBO:0027537"}


id: PR:O14368
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hsp16 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14368"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein 16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3E7.02c","synonyms":[{"name":"16 kDa heat shock protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-hsp16","type":"exact"}],"termid":"PR:O14368"}


id: GO:0044035
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A catabolic process - chemical reactions and pathways resulting in the breakdown of substances - which involves more than one organism.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete multi-organism catabolic process (obsolete GO:0044035)","synonyms":[{"name":"multi-organism catabolism","type":"exact"},{"name":"multi-organismal catabolic process","type":"exact"},{"name":"multi-organismal catabolism","type":"exact"}],"termid":"GO:0044035"}


id: GO:0003841
data:
  {"annotated_genes":["SJAG_04041","SJAG_01957","SJAG_04792"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86205,87326,100097],"is_not":false,"summary":null,"term":"GO:0003841"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acyl-CoA + 1-acyl-sn-glycerol-3-phosphate = CoA + 1,2-diacyl-sn-glycerol-3-phosphate.","definition_xrefs":["EC:2.3.1.51","GOC:ab"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acylglycerol O-acyltransferase activity","termid":"GO:0016411"},{"relation_name":"is_a","term_name":"lysophosphatidic acid acyltransferase activity","termid":"GO:0042171"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01957":null,"SJAG_04041":null,"SJAG_04792":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016746"],"is_obsolete":false,"name":"1-acylglycerol-3-phosphate O-acyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-1482667","Reactome:R-HSA-8849345","GO:0004469","Reactome:R-HSA-1482689","Reactome:R-HSA-1482894","Reactome:R-HSA-1482539","Reactome:R-HSA-1482547","Reactome:R-HSA-75885","RHEA:19709","MetaCyc:RXN-1623","Reactome:R-HSA-1482598","Reactome:R-HSA-1482548","Reactome:R-HSA-1482636"],"synonyms":[{"name":"1-acyl-sn-glycero-3-phosphate acyltransferase activity","type":"related"},{"name":"1-acyl-sn-glycerol 3-phosphate acyltransferase activity","type":"related"},{"name":"1-acyl-sn-glycerol-3-phosphate acyltransferase activity","type":"exact"},{"name":"1-acylglycero-3-phosphate acyltransferase activity","type":"related"},{"name":"1-acylglycerolphosphate acyltransferase activity","type":"related"},{"name":"1-acylglycerophosphate acyltransferase activity","type":"related"},{"name":"acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase activity","type":"related"},{"name":"lysophosphatidate acyltransferase activity","type":"exact"},{"name":"lysophosphatidic acid-acyltransferase activity","type":"related"}],"termid":"GO:0003841","terms_by_termid":{"GO:0003841":null}}


id: PBO:0062822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OSER1 divergent transcript","termid":"PBO:0062822"}


id: PBO:0060790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase core subunit S1","termid":"PBO:0060790"}


id: GO:1902919
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of poly(5-hydroxyvalerate).","definition_xrefs":["GOC:mengo_curators","PMID:21705209","GOC:TermGenie","GO_REF:0000068"],"direct_ancestors":[{"relation_name":"is_a","term_name":"poly(5-hydroxyvalerate) metabolic process","termid":"GO:1902918"},{"relation_name":"is_a","term_name":"poly(hydroxyvalerate) biosynthetic process","termid":"GO:1902921"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"poly(5-hydroxyvalerate) biosynthetic process","synonyms":[{"name":"poly(5-hydroxyvalerate) anabolism","type":"exact"},{"name":"poly(5-hydroxyvalerate) biosynthesis","type":"exact"},{"name":"poly(5-hydroxyvalerate) formation","type":"exact"},{"name":"poly(5-hydroxyvalerate) synthesis","type":"exact"}],"termid":"GO:1902919"}


id: GO:0071037
data:
  {"annotated_genes":["SJAG_03745","SJAG_03984"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88391,109374],"is_not":false,"summary":null,"term":"GO:0071037"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a small nuclear RNA (snRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target snRNA.","definition_xrefs":["GOC:krc","GOC:dgf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snRNA catabolic process","termid":"GO:0016076"},{"relation_name":"is_a","term_name":"nuclear RNA surveillance","termid":"GO:0071027"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03745":null,"SJAG_03984":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016073"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0016073"],"is_obsolete":false,"name":"nuclear polyadenylation-dependent snRNA catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"nuclear poly(A)-dependent snRNA catabolic process","type":"related"}],"termid":"GO:0071037","terms_by_termid":{"GO:0071037":null}}


id: PBO:0082514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of the histone acetyltransferase complex (NuA4); acetylates four conserved internal lysines of histone H4 N-terminal tail and can acetylate histone H2A; master regulator of cellular acetylation balance; required for cell cycle progression and transcriptional silencing at the rDNA locus and regulation of autophagy; human ortholog TIP60/KAT5 is implicated in cancer and other diseases, functionally complements lethality of the esa1 null mutation","termid":"PBO:0082514"}


id: PBO:0051240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable (II)-51-2 (pseudogene)","termid":"PBO:0051240"}


id: GO:0086081
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a protein or protein complex that results in the connection of an atrial cardiomyocyte with an AV node cell and contributes to the communication between the two cells.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding involved in heterotypic cell-cell adhesion","termid":"GO:0086080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0098631"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515","GO:0098631"],"is_obsolete":false,"name":"cell adhesive protein binding involved in atrial cardiac muscle cell-AV node cell communication","synonyms":[{"name":"cell adhesive protein binding involved in atrial cardiomyocyte-AV node cell communication","type":"exact"},{"name":"cell adhesive protein binding involved in atrial cardiomyocyte-atrioventricular node cell communication","type":"exact"}],"termid":"GO:0086081"}


id: FYPO:0006314
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which formation of the ascus, the sac-like structure that encloses spores, does not occur.","definition_xrefs":["PomBase:mah","PMID:29259000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal ascus development","termid":"FYPO:0000680"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000680"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000680"],"is_obsolete":false,"name":"abolished ascus formation","synonyms":[{"name":"abolished asci formation","type":"exact"},{"name":"abolished ascus development","type":"related"}],"termid":"FYPO:0006314"}


id: GO:0032964
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%).","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"},{"relation_name":"is_a","term_name":"collagen metabolic process","termid":"GO:0032963"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"collagen biosynthetic process","synonyms":[{"name":"collagen anabolism","type":"exact"},{"name":"collagen biosynthesis","type":"exact"},{"name":"collagen formation","type":"exact"},{"name":"collagen synthesis","type":"exact"}],"termid":"GO:0032964"}


id: PBO:0067018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 30, pseudogene","termid":"PBO:0067018"}


id: FYPO:0002245
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of monosaccharide binding by a gene product (usually a protein) in a mutant is abnormal. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal molecular function","termid":"FYPO:0000707"},{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"abnormal monosaccharide binding","termid":"FYPO:0002245"}


id: PBO:0054515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1915","termid":"PBO:0054515"}


id: PBO:0066044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAP1B like (pseudogene)","termid":"PBO:0066044"}


id: GO:0002795
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of antimicrobial peptide secretion.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of antimicrobial peptide production","termid":"GO:0002785"},{"relation_name":"is_a","term_name":"negative regulation of peptide secretion","termid":"GO:0002792"},{"relation_name":"is_a","term_name":"regulation of antimicrobial peptide secretion","termid":"GO:0002794"},{"relation_name":"negatively_regulates","term_name":"antimicrobial peptide secretion","termid":"GO:0002776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0010467"],"is_obsolete":false,"name":"negative regulation of antimicrobial peptide secretion","synonyms":[{"name":"down regulation of antimicrobial peptide secretion","type":"exact"},{"name":"down-regulation of antimicrobial peptide secretion","type":"exact"},{"name":"downregulation of antimicrobial peptide secretion","type":"exact"},{"name":"inhibition of antimicrobial peptide secretion","type":"narrow"}],"termid":"GO:0002795"}


id: PBO:0078136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 15 (pseudogene)","termid":"PBO:0078136"}


id: PBO:0071718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 16","termid":"PBO:0071718"}


id: PBO:0040906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BMS1 pseudogene 10","termid":"PBO:0040906"}


id: PBO:0082290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Arginine/alanine amino peptidase; overproduction stimulates glycogen accumulation; AAP1 has a paralog, APE2, that arose from the whole genome duplication","termid":"PBO:0082290"}


id: PBO:0039402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase promoting complex subunit 2","termid":"PBO:0039402"}


id: PBO:0032764
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"expression of exogenous PCNA-binding peptide fused to EGFP causes phenotype of inviable elongated mononucleate cells","termid":"PBO:0032764"}


id: PR:O59718
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nem1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59718"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear envelope morphology protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3B8.10c","synonyms":[{"name":"Spom972h-nem1","type":"exact"}],"termid":"PR:O59718"}


id: GO:0141126
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a short-chain fatty acyl-CoA + H2O = a short fatty acid + CoA + H+. A short-chain fatty acid has an aliphatic tail of less than 6 carbons.","definition_xrefs":["RHEA:68180"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acyl-CoA hydrolase activity","termid":"GO:0047617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016788","GO:0016787"],"is_obsolete":false,"name":"short-chain fatty acyl-CoA hydrolase activity","secondary_identifiers":["MetaCyc:3.1.2.18-RXN","EC:3.1.2.18"],"termid":"GO:0141126"}


id: PBO:0044339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 23","termid":"PBO:0044339"}


id: PBO:0046262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EMC1 antisense RNA 1","termid":"PBO:0046262"}


id: PBO:0059471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MSL complex subunit 1","termid":"PBO:0059471"}


id: FYPO:0001186
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of maltose alpha-glucosidase (also known as maltase) activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal maltase activity","termid":"FYPO:0001184"},{"relation_name":"is_a","term_name":"decreased alpha-glucosidase activity","termid":"FYPO:0001185"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000654","FYPO:0000707","FYPO:0001985","FYPO:0000652","FYPO:0005447"],"is_obsolete":false,"name":"decreased maltase activity","synonyms":[{"name":"decreased maltose alpha-glucosidase activity","type":"exact"},{"name":"reduced maltase activity","type":"exact"},{"name":"reduced maltose alpha-glucosidase activity","type":"related"}],"termid":"FYPO:0001186"}


id: PBO:0086942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RanGTP-binding protein; inhibits RanGAP1 (Rna1p)-mediated GTP hydrolysis of RanGTP (Gsp1p); shares similarity to proteins in other fungi but not in higher eukaryotes","termid":"PBO:0086942"}


id: PBO:0089812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucan 1,4-alpha-glucosidase","termid":"PBO:0089812"}


id: PBO:0041155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic transcription factor 3 pseudogene 10","termid":"PBO:0041155"}


id: RO:HOM0000037
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Historical homology that involves a structure that has no other homologs in the species in which it is defined, and several homologous structures in another species.","definition_xrefs":["BGEE:curator"],"direct_ancestors":[{"relation_name":"is_a","term_name":"in_historical_homology_relationship_with","termid":"RO:HOM0000007"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_1_to_many_homology_relationship_with","synonyms":[{"name":"1 to many homologous to","type":"exact"},{"name":"1:many homology","type":"related"},{"name":"one-to-many homology","type":"exact"}],"termid":"RO:HOM0000037"}


id: PR:P87113
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A sigma non-opioid intracellular receptor 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00568","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-8 sterol isomerase erg2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC20G8.07c","secondary_identifiers":["UniProtKB:P87113"],"synonyms":[{"name":"Delta-8--Delta-7 sterol isomerase erg2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SIGMAR1","type":"exact"},{"name":"ergosterol biosynthesis protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87113"}


id: PBO:0031070
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_spore_germination","termid":"PBO:0031070"}


id: PBO:0060117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND6 pseudogene 18","termid":"PBO:0060117"}


id: FYPO:0006984
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a transcript synthesized on a DNA template by RNA polymerase III is longer than normal due to transcription beyond the normal termination site.","definition_xrefs":["PomBase:mah","PMID:31294478"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased transcriptional readthrough","termid":"FYPO:0003049"},{"relation_name":"output_of","term_name":"abnormal termination of RNA polymerase III transcription","termid":"FYPO:0006983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0003048"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000294"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0003048","FYPO:0005447","FYPO:0006551","FYPO:0001320","FYPO:0000294","FYPO:0001985"],"is_obsolete":false,"name":"increased transcriptional readthrough at RNA polymerase III-transcribed genes","synonyms":[{"name":"3'-extended transcript at RNA polymerase III-transcribed genes","type":"related"},{"name":"increased transcript length by 3' extension of RNA polymerase III-transcribed genes","type":"related"},{"name":"increased transcript length due to transcriptional readthrough at RNA polymerase III-transcribed genes","type":"exact"},{"name":"poly(A) readthrough at RNA polymerase III-transcribed genes","type":"related"}],"termid":"FYPO:0006984"}


id: PBO:0070690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 61","termid":"PBO:0070690"}


id: PBO:0086766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; similar to DTDP-glucose 4,6-dehydratases; GFP-fusion protein localizes to the cytoplasm; up-regulated in response to the fungicide mancozeb; not essential for viability","termid":"PBO:0086766"}


id: GO:0072671
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of proteins transported from mitochondria and targeted to cytoplasmic proteasomes for degradation as a response to oxidative stress conditions.","definition_xrefs":["PMID:21109188","PMID:21070972","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteasome-mediated ubiquitin-dependent protein catabolic process","termid":"GO:0043161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030163"},{"rel_name":"part_of","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"mitochondria-associated ubiquitin-dependent protein catabolic process","synonyms":[{"name":"MAD","type":"exact"},{"name":"mitochondria-associated protein catabolic process","type":"exact"},{"name":"mitochondria-associated protein degradation","type":"exact"},{"name":"mitochondrion-associated protein catabolic process","type":"exact"}],"termid":"GO:0072671"}


id: GO:0010656
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate or frequency of muscle cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a muscle cell and result in its death.","definition_xrefs":["GOC:tb","GOC:dph","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle cell apoptotic process","termid":"GO:0010660"},{"relation_name":"is_a","term_name":"negative regulation of apoptotic process","termid":"GO:0043066"},{"relation_name":"negatively_regulates","term_name":"muscle cell apoptotic process","termid":"GO:0010657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of muscle cell apoptotic process","synonyms":[{"name":"negative regulation of muscle cell apoptosis","type":"narrow"}],"termid":"GO:0010656"}


id: PBO:0058440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5004","termid":"PBO:0058440"}


id: SO:0000661
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000661 intron_attribute (obsolete SO:0000661)","termid":"SO:0000661"}


id: PBO:0066482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase","termid":"PBO:0066482"}


id: SO:0001995
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant occurring in the intron, within 10 bases of exon.","definition_xrefs":["sanger:am"],"direct_ancestors":[{"relation_name":"is_a","term_name":"splicing_variant","termid":"SO:0001568"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extended_intronic_splice_region_variant","synonyms":[{"name":"extended intronic splice region variant","type":"exact"}],"termid":"SO:0001995"}


id: GO:0140845
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that modulates the frequency, rate or extent of the transition from the initiation to the elongation phases of transcription by RNA polymerase II.","definition_xrefs":["PMID:28248323"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of RNA biosynthetic process","termid":"GO:2001141"},{"relation_name":"regulates","term_name":"RNA polymerase II promoter clearance","termid":"GO:0001111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of promoter clearance from RNA polymerase II promoter","termid":"GO:0140845"}


id: GO:0017168
data:
  {"annotated_genes":["SJAG_01995"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84172],"is_not":false,"summary":null,"term":"GO:0017168"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-oxo-L-proline + ATP + 2 H2O = L-glutamate + ADP + 2 H+ + phosphate.","definition_xrefs":["RHEA:10348","EC:3.5.2.9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides","termid":"GO:0016812"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01995":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016810","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"5-oxoprolinase (ATP-hydrolyzing) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-5603208","Wikipedia:5-oxoprolinase_(ATP-hydrolysing)","KEGG_REACTION:R00251","MetaCyc:5-OXOPROLINASE-ATP-HYDROLYSING-RXN","Reactome:R-HSA-1247935"],"synonyms":[{"name":"5-OPase activity","type":"related"},{"name":"5-oxo-L-prolinase activity","type":"related"},{"name":"5-oxo-L-proline amidohydrolase (ATP-hydrolysing)","type":"related"},{"name":"5-oxoprolinase (ATP-hydrolysing)","type":"related"},{"name":"5-oxoprolinase activity","type":"related"},{"name":"L-pyroglutamate hydrolase activity","type":"related"},{"name":"oxoprolinase activity","type":"related"},{"name":"pyroglutamase (ATP-hydrolysing)","type":"related"},{"name":"pyroglutamase (ATP-hydrolyzing) activity","type":"related"},{"name":"pyroglutamase activity","type":"related"},{"name":"pyroglutamate hydrolase activity","type":"related"},{"name":"pyroglutamic hydrolase activity","type":"related"}],"termid":"GO:0017168","terms_by_termid":{"GO:0017168":null}}


id: PBO:0078871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily M member 5","termid":"PBO:0078871"}


id: PBO:0070709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L9 pseudogene 14","termid":"PBO:0070709"}


id: PBO:0069425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 689, pseudogene","termid":"PBO:0069425"}


id: PBO:0031013
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_nucleus","termid":"PBO:0031013"}


id: GO:0099628
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which diffusing neurotransmitter receptor becomes trapped in region of the plasma membrane.","definition_xrefs":["PMID:18832033"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor diffusion trapping","termid":"GO:0098953"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"neurotransmitter receptor diffusion trapping","termid":"GO:0099628"}


id: GO:0061759
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + reduced acceptor -> (S)-2-hydroxyglutarate + acceptor.","definition_xrefs":["PMID:26774271","GOC:dph","RHEA:21254"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-hydroxyglutarate dehydrogenase activity","termid":"GO:0047545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"alpha-ketoglutarate reductase activity","synonyms":[{"name":"2-hydroxyglutarate dehydrogenase activity, reverse reaction","type":"exact"},{"name":"2-ketoglutarate reductase activity","type":"related"},{"name":"2-oxoglutarate reductase activity","type":"related"},{"name":"D-2HG reductase activity","type":"related"}],"termid":"GO:0061759"}


id: PBO:0011137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor Pho7","termid":"PBO:0011137"}


id: PBO:0054670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2076","termid":"PBO:0054670"}


id: GO:0075085
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the host organism activates, maintains or increases the frequency, rate or extent of transmembrane receptor-mediated cAMP signal transduction in the symbiont organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by host of symbiont transmembrane receptor-mediated cAMP signal transduction (obsolete GO:0075085)","synonyms":[{"name":"activation by host of symbiont transmembrane receptor-mediated cAMP signal transduction","type":"narrow"},{"name":"positive regulation by host of symbiont transmembrane receptor-mediated cAMP signaling","type":"exact"},{"name":"promotion by host of symbiont transmembrane receptor protein activity involved in cAMP-mediated signal transduction","type":"exact"},{"name":"stimulation by host of symbiont transmembrane receptor-mediated cAMP signal transduction","type":"narrow"},{"name":"upregulation by host of symbiont transmembrane receptor-mediated cAMP signal transduction","type":"exact"}],"termid":"GO:0075085"}


id: PBO:0030184
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_cell_population","termid":"PBO:0030184"}


id: GO:0003230
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a cardiac atrium over time, from its formation to the mature structure. A cardiac atrium receives blood from a vein and pumps it to a cardiac ventricle.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac chamber development","termid":"GO:0003205"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac atrium development","termid":"GO:0003230"}


id: PR:Q10262
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug115 gene.","definition_xrefs":["UniProtKB:Q10262","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 115 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC56F8.14c","synonyms":[{"name":"Spom972h-mug115","type":"exact"}],"termid":"PR:Q10262"}


id: MOD:01001
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that inserts or replaces a residue with a 2-aminoisobutyric acid.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"unnatural residue","termid":"MOD:00850"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-aminoisobutyric acid residue (Aib)","synonyms":[{"name":"2-amino-2-methylpropanoic acid","type":"exact"},{"name":"2-amino-2-methylpropionic acid","type":"exact"},{"name":"2-methylalanine","type":"exact"},{"name":"Aib","type":"exact"},{"name":"alpha,alpha-dimethylglycine","type":"exact"},{"name":"alpha-aminoisobutyric acid","type":"exact"},{"name":"alpha-methylalanine","type":"exact"}],"termid":"MOD:01001"}


id: MOD:01684
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to a palmitoylated-L-cysteine, such as N-palmitoyl-L-cysteine or S-palmitoyl-L-cysteine.","definition_xrefs":["OMSSA:92","Unimod:47"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palmitoylated-L-cysteine","synonyms":[{"name":"Hexadecanoylated L-cysteine","type":"exact"},{"name":"Palmitoyl","type":"related"},{"name":"Palmitoylation","type":"related"},{"name":"PamCys","type":"exact"},{"name":"palmitoylationc","type":"exact"}],"termid":"MOD:01684"}


id: FYPO:0005311
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 4 of histone H3 is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone methylation during vegetative growth","termid":"FYPO:0000861"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal histone H3-K4 methylation during vegetative growth","synonyms":[{"name":"normal histone H3 K4 methylation during vegetative growth","type":"exact"},{"name":"normal histone H3-K4 methylation during mitotic cell cycle","type":"related"},{"name":"normal histone H3K4me during vegetative growth","type":"exact"},{"name":"normal histone lysine H3 K4 methylation during vegetative growth","type":"exact"}],"termid":"FYPO:0005311"}


id: PBO:0002239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADPH-hemoprotein reductase (predicted)","termid":"PBO:0002239"}


id: PBO:0050425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein H2","termid":"PBO:0050425"}


id: PBO:0082978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic trifunctional enzyme; catalyzes sequential reactions 10-formyl-THF synthetase (EC 6.3.4.3), 5,10-methenyl-THF cyclohydrolase (EC 3.5.4.9), and 5,10-methylene-THF dehydrogenase (EC 1.5.1.5), to supply forms of activated one-carbon units required for biosynthesis of purines, histidine, methionine, pantothenic acid, the formyl group of mitochondrial fMet-tRNAfMet, and the methyl group of thymidylate; null mutation causes auxotrophy for adenine and histidine in rich medium","termid":"PBO:0082978"}


id: PBO:0042519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 2","termid":"PBO:0042519"}


id: SO:0001494
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length.","definition_xrefs":["PMID:11222754"],"direct_ancestors":[{"relation_name":"is_a","term_name":"conserved_region","termid":"SO:0000330"},{"relation_name":"part_of","term_name":"point_centromere","termid":"SO:0001794"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromere_DNA_Element_II","synonyms":[{"name":"CDEII","type":"exact"},{"name":"centromere DNA Element II","type":"exact"}],"termid":"SO:0001494"}


id: GO:0044161
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A vesicle formed of membrane or protein, found in the cytoplasm of a host cell.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host intracellular membrane-bounded organelle","termid":"GO:0033648"},{"relation_name":"is_a","term_name":"host cell cytoplasm part","termid":"GO:0033655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell cytoplasmic vesicle","termid":"GO:0044161"}


id: PBO:0078689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon AAG) 2-2","termid":"PBO:0078689"}


id: GO:0014023
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross section. Neural rod formation occurs during primary neurulation in teleosts.","definition_xrefs":["GOC:dh","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"primary neural tube formation","termid":"GO:0014020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural rod formation","termid":"GO:0014023"}


id: GO:0050023
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-fuconate = 2-dehydro-3-deoxy-L-fuconate + H2O.","definition_xrefs":["EC:4.2.1.68","RHEA:22772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"L-fuconate dehydratase activity","secondary_identifiers":["KEGG_REACTION:R03688","MetaCyc:L-FUCONATE-HYDRATASE-RXN"],"synonyms":[{"name":"L-fuconate hydratase activity","type":"exact"},{"name":"L-fuconate hydro-lyase (2-dehydro-3-deoxy-L-fuconate-forming)","type":"related"},{"name":"L-fuconate hydro-lyase activity","type":"related"}],"termid":"GO:0050023"}


id: PBO:0076790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tectorin beta","termid":"PBO:0076790"}


id: GO:0102484
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: esculetin + UDP-alpha-D-glucose(2-) = esculin + UDP(3-) + H+.","definition_xrefs":["GOC:pz","EC:2.4.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016757","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"esculetin glucosyltransferase activity","secondary_identifiers":["MetaCyc:RXN-14182"],"termid":"GO:0102484"}


id: PBO:0064236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PLCL2 antisense RNA 1","termid":"PBO:0064236"}


id: PATO:0002112
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes.","definition_xrefs":["answers.com:answers.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure, cavities","termid":"PATO:0002014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"perforate","secondary_identifiers":["PATO:0000649"],"synonyms":[{"name":"permeable","type":"related"},{"name":"pierced","type":"related"}],"termid":"PATO:0002112"}


id: GO:0050829
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Reactions triggered in response to the presence of a Gram-negative bacterium that act to protect the cell or organism.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"defense response to bacterium","termid":"GO:0042742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"defense response to Gram-negative bacterium","synonyms":[{"name":"Gram-negative antibacterial peptide activity","type":"related"},{"name":"defence response to Gram-negative bacteria","type":"exact"},{"name":"defence response to Gram-negative bacterium","type":"exact"},{"name":"defense response to Gram-negative bacteria","type":"exact"}],"termid":"GO:0050829"}


id: GO:0034999
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An oligosaccharyltransferase (OST) complex that contains the seven polypeptides found in OST complex I, plus heterotrimeric Sec61alpha-beta-gamma. Of the three forms of mammalian OST complexes identified, the OSTII complex has intermediate affinity for ribosomes.","definition_xrefs":["GOC:BHF","PMID:15835887"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharyltransferase complex","termid":"GO:0008250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005789"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005789","GO:0032991","GO:0005575","GO:0005783","GO:0005737"],"is_obsolete":false,"name":"oligosaccharyltransferase II complex","synonyms":[{"name":"OSTCII","type":"exact"}],"termid":"GO:0034999"}


id: PBO:0054536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1936","termid":"PBO:0054536"}


id: PBO:0068500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 86, pseudogene","termid":"PBO:0068500"}


id: GO:0075117
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont stops, prevents, or reduces the frequency, rate or extent of host transmembrane receptor-mediated cAMP signal transduction. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by symbiont of host transmembrane receptor-mediated cAMP signal transduction (obsolete GO:0075117)","synonyms":[{"name":"downregulation by symbiont of host transmembrane receptor-mediated cAMP signal transduction","type":"exact"},{"name":"inhibition by symbiont of host transmembrane receptor-mediated cAMP signal transduction","type":"narrow"},{"name":"negative regulation by symbiont of host transmembrane receptor-mediated cAMP signaling","type":"exact"}],"termid":"GO:0075117"}


id: PBO:0070260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U11 small nuclear 5, pseudogene","termid":"PBO:0070260"}


id: PBO:0063769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHD finger protein 2","termid":"PBO:0063769"}


id: PBO:0068938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 181, pseudogene","termid":"PBO:0068938"}


id: PBO:0072905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretory carrier membrane protein 3","termid":"PBO:0072905"}


id: PBO:0090101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase-promoting complex TPR lobe subcomplex subunit Cut9/Apc6","termid":"PBO:0090101"}


id: PBO:0064906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 3 regulatory subunit B, beta","termid":"PBO:0064906"}


id: PBO:0047360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box and leucine rich repeat protein 14","termid":"PBO:0047360"}


id: PBO:0017555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic and meiotic (sporulation) septin Spn2","termid":"PBO:0017555"}


id: PBO:0084102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Guanyl-nucleotide exchange factor for the small G-protein Sec4p; essential for post-Golgi vesicle transport and for autophagy; associates with the exocyst, via exocyst subunit Sec15p, on secretory vesicles","termid":"PBO:0084102"}


id: GO:0008346
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The behavior of a larval organism relating to the progression of that organism along the ground by the process of lifting and setting down each leg.","definition_xrefs":["GOC:go_curators","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"larval locomotory behavior","termid":"GO:0008345"},{"relation_name":"is_a","term_name":"walking behavior","termid":"GO:0090659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"larval walking behavior","synonyms":[{"name":"larval walking behaviour","type":"exact"}],"termid":"GO:0008346"}


id: SO:0000130
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing a gene that is regulated after it has been translated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulated","termid":"SO:0000119"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"post_translationally_regulated","synonyms":[{"name":"post translationally regulated","type":"exact"},{"name":"post-translationally regulated","type":"exact"}],"termid":"SO:0000130"}


id: PBO:0064123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PKD2L2 divergent transcript","termid":"PBO:0064123"}


id: GO:0002310
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of an alpha-beta T cell population by cell division as part of an immune response.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-beta T cell activation involved in immune response","termid":"GO:0002287"},{"relation_name":"is_a","term_name":"T cell proliferation involved in immune response","termid":"GO:0002309"},{"relation_name":"is_a","term_name":"alpha-beta T cell proliferation","termid":"GO:0046633"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"alpha-beta T cell proliferation involved in immune response","synonyms":[{"name":"alpha-beta T cell proliferation during immune response","type":"related"},{"name":"alpha-beta T lymphocyte proliferation during immune response","type":"related"},{"name":"alpha-beta T-cell proliferation during immune response","type":"related"},{"name":"alpha-beta T-lymphocyte proliferation during immune response","type":"related"}],"termid":"GO:0002310"}


id: GO:2000032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of secondary shoot formation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of morphogenesis of a branching structure","termid":"GO:0060688"},{"relation_name":"is_a","term_name":"regulation of plant organ formation","termid":"GO:1905428"},{"relation_name":"regulates","term_name":"secondary shoot formation","termid":"GO:0010223"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of secondary shoot formation","synonyms":[{"name":"regulation of auxiliary shoot formation","type":"related"},{"name":"regulation of axillary shoot formation","type":"related"},{"name":"regulation of axillary shoot system formation","type":"exact"},{"name":"regulation of shoot branching","type":"related"}],"termid":"GO:2000032"}


id: PBO:0005228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNase MRP subunit (predicted)","termid":"PBO:0005228"}


id: PBO:0088710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF2457 family conserved fungal protein","termid":"PBO:0088710"}


id: GO:0097198
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by addition of three methyl groups to lysine at position 36 of the histone.","definition_xrefs":["PMID:17948059","GOC:se"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K36 trimethylation (obsolete GO:0097198)","termid":"GO:0097198"}


id: PBO:0043919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cornulin","termid":"PBO:0043919"}


id: PBO:0048340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 51","termid":"PBO:0048340"}


id: PBO:0072473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 2","termid":"PBO:0072473"}


id: GO:0038177
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Interacting with a death receptor such that the proportion of death receptors in an active form is increased. Ligand binding to a death receptor often induces a conformational change to activate the receptor.","definition_xrefs":["GOC:pr","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor ligand activity","termid":"GO:0048018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0140677","GO:0005515","GO:0005488","GO:0003674","GO:0098772"],"is_obsolete":false,"name":"death receptor agonist activity","synonyms":[{"name":"death receptor activator activity","type":"exact"}],"termid":"GO:0038177"}


id: GO:0009466
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete class I cytochrome c (obsolete GO:0009466)","synonyms":[{"name":"class I cytochrome c","type":"exact"}],"termid":"GO:0009466"}


id: PBO:0087233
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sensor-transducer of the stress-activated PKC1-MPK1 kinase pathway; involved in maintenance of cell wall integrity; required for mitophagy; involved in organization of the actin cytoskeleton; secretory pathway Wsc1p is required for the arrest of secretion response","termid":"PBO:0087233"}


id: PBO:0077625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymosin beta 15C","termid":"PBO:0077625"}


id: GO:0045758
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of actin polymerization and/or depolymerization.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of actin polymerization and/or depolymerization (obsolete GO:0045758)","synonyms":[{"name":"positive regulation of actin polymerization and/or depolymerization","type":"exact"}],"termid":"GO:0045758"}


id: PBO:0074178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 38 member 1","termid":"PBO:0074178"}


id: PBO:0080551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WBP1L pseudogene 10","termid":"PBO:0080551"}


id: PBO:0068128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 435","termid":"PBO:0068128"}


id: PBO:0049695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyaluronan and proteoglycan link protein 1","termid":"PBO:0049695"}


id: PBO:0049395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gilles de la Tourette syndrome chromosome region, candidate 1","termid":"PBO:0049395"}


id: FYPO:0008060
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of one protein to a ubiquitin monomer is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:16138082"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein-protein interaction","termid":"FYPO:0000703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000702","FYPO:0000652","FYPO:0000257"],"is_obsolete":false,"name":"normal mono ubiquitin binding","termid":"FYPO:0008060"}


id: GO:0046182
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of L-idonate, the anion of idonic acid, an aldonic acid derived from L-idose, an aldohexose which is epimeric with D-glucose.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate biosynthetic process","termid":"GO:0016051"},{"relation_name":"is_a","term_name":"L-idonate metabolic process","termid":"GO:0019523"},{"relation_name":"is_a","term_name":"aldonic acid biosynthetic process","termid":"GO:0046175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"L-idonate biosynthetic process","synonyms":[{"name":"L-idonate anabolism","type":"exact"},{"name":"L-idonate biosynthesis","type":"exact"},{"name":"L-idonate formation","type":"exact"},{"name":"L-idonate synthesis","type":"exact"}],"termid":"GO:0046182"}


id: PBO:0077641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMX4 antisense RNA 1","termid":"PBO:0077641"}


id: PBO:0011471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human SLC5A family","termid":"PBO:0011471"}


id: GO:0034194
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of D-galactonate, the anion of D-galactonic acid.","definition_xrefs":["GOC:ai","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate catabolic process","termid":"GO:0016052"},{"relation_name":"is_a","term_name":"galactonate catabolic process","termid":"GO:0019584"},{"relation_name":"is_a","term_name":"D-galactonate metabolic process","termid":"GO:0034192"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044248","GO:0005975","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"D-galactonate catabolic process","secondary_identifiers":["MetaCyc:GALACTCAT-PWY"],"synonyms":[{"name":"D-galactonate breakdown","type":"exact"},{"name":"D-galactonate catabolism","type":"exact"},{"name":"D-galactonate degradation","type":"exact"}],"termid":"GO:0034194"}


id: GO:0052135
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of environmental oxygen within its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete negative aerotaxis in host (obsolete GO:0052135)","synonyms":[{"name":"negative aerotaxis within host","type":"exact"}],"termid":"GO:0052135"}


id: PBO:0063519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyridoxal kinase","termid":"PBO:0063519"}


id: GO:0031265
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex formed upon binding of Fas/CD95/APO-1 to its ligand. The complex includes FADD/Mort1, procaspase-8/10 and c-FLIP in addition to the ligand-bound receptor.","definition_xrefs":["PMID:12628743","PMID:12655293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"death-inducing signaling complex","termid":"GO:0031264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"CD95 death-inducing signaling complex","synonyms":[{"name":"CD95 DISC","type":"exact"},{"name":"CD95 death-inducing signalling complex","type":"exact"},{"name":"Fas death-inducing signaling complex","type":"exact"}],"termid":"GO:0031265"}


id: GO:0052025
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change that impairs the structure or function of the host endomembrane system. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host membrane","termid":"GO:0141171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host cell endomembrane system","synonyms":[{"name":"disruption by symbiont of host cell membrane","type":"broad"},{"name":"modification by symbiont of host cell membrane","type":"broad"},{"name":"symbiont-mediated disruption of host cell membrane","type":"broad"},{"name":"symbiont-mediated perturbation of host cell membrane","type":"broad"}],"termid":"GO:0052025"}


id: GO:0051128
data:
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id: GO:0160087
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of removing the majority of the cytoplasm and organelles from a spermatid as it develops into a mature flagellated sperm cell.","definition_xrefs":["PMID:21866274","PMID:23087837"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"part_of","term_name":"spermatogenesis","termid":"GO:0007283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spermatid cytoplasm removal during spermiation of flagellated sperm","termid":"GO:0160087"}


id: GO:0002947
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A receptor complex that contains one or more members of the tumor necrosis factor (TNF) receptor superfamily.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor complex","termid":"GO:0043235"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"tumor necrosis factor receptor superfamily complex","synonyms":[{"name":"TNF receptor superfamily complex","type":"related"}],"termid":"GO:0002947"}


id: FYPO:0004114
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce an inviable cell that does not divide, and that has a septum with abnormal size, shape, or structure.","definition_xrefs":["PomBase:mah","PMID:15116432"],"direct_ancestors":[{"relation_name":"has_part","term_name":"abnormal septum morphology during vegetative growth","termid":"FYPO:0002023"},{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division","termid":"FYPO:0001991"},{"relation_name":"is_a","term_name":"abnormal septum morphology during vegetative growth","termid":"FYPO:0002023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000004","FYPO:0000631","FYPO:0000032"],"is_obsolete":false,"name":"inviable after spore germination, without cell division, abnormal septum morphology","synonyms":[{"name":"inviable after spore germination, undivided cell, abnormal septum morphology","type":"exact"},{"name":"inviable after spore germination, without cell division, abnormal septum formation","type":"exact"},{"name":"inviable following spore germination, without cell division, abnormal septum morphology","type":"exact"},{"name":"inviable germinated spore, without cell division, abnormal septum morphology","type":"exact"},{"name":"lethal after spore germination, without cell division, abnormal septum morphology","type":"exact"}],"termid":"FYPO:0004114"}


id: PBO:0031550
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_sister_chromatid_separation","termid":"PBO:0031550"}


id: GO:0034343
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of type III interferon due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Interferon lambda is the only member of the type III interferon found so far.","definition_xrefs":["PMID:16734557","GOC:add","PMID:15546383","ISBN:0126896631"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"type III interferon production","secondary_identifiers":["GO:0072644"],"synonyms":[{"name":"type III IFN production","type":"exact"},{"name":"type III interferon secretion","type":"narrow"}],"termid":"GO:0034343"}


id: GO:0051287
data:
  {"annotated_genes":["SJAG_02135","SJAG_02176","SJAG_03903","SJAG_01012","SJAG_03828","SJAG_00234","SJAG_04652","SJAG_03152","SJAG_04186","SJAG_01137","SJAG_01075","SJAG_00235","SJAG_00409","SJAG_00027","SJAG_04039","SJAG_00502","SJAG_06622","SJAG_02313","SJAG_00281","SJAG_03562","SJAG_04362","SJAG_00636","SJAG_01432","SJAG_02945","SJAG_06621"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90123,92495,94299,95898,97152,100946,101191,102289,102608,105069,105070,105071,105072,105073,105074,105075,105522,105523,105524,105525,105526,105527,105528,111876,112998,114559,114827],"is_not":false,"summary":null,"term":"GO:0051287"},{"annotations":[110901,108078,110522,86225,100317],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070403"}]},"cv_name":"molecular_function","definition":"Binding to nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenyl nucleotide binding","termid":"GO:0030554"}],"gene_count":25,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00234":null,"SJAG_00235":null,"SJAG_00281":null,"SJAG_00409":null,"SJAG_00502":null,"SJAG_00636":null,"SJAG_01012":null,"SJAG_01075":null,"SJAG_01137":null,"SJAG_01432":null,"SJAG_02135":null,"SJAG_02176":null,"SJAG_02313":null,"SJAG_02945":null,"SJAG_03152":null,"SJAG_03562":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_04039":null,"SJAG_04186":null,"SJAG_04362":null,"SJAG_04652":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"NAD binding","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0051288"],"synonyms":[{"name":"NAD or NADH binding","type":"related"},{"name":"NAD+ or NADH binding","type":"related"},{"name":"nicotinamide adenine dinucleotide binding","type":"exact"}],"termid":"GO:0051287","terms_by_termid":{"GO:0051287":null,"GO:0070403":null}}


id: PBO:0051937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intelectin 1","termid":"PBO:0051937"}


id: GO:0071128
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha5-beta1 integrin complex bound to osteopontin.","definition_xrefs":["PMID:16005200"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"alpha5-beta1 integrin-osteopontin complex","synonyms":[{"name":"ITGA5-ITGB1-SPP1 complex","type":"narrow"}],"termid":"GO:0071128"}


id: PBO:0004362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fimbrin","termid":"PBO:0004362"}


id: FYPO:0008195
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of histone H3-KMe binding by a gene product (usually a protein) in a mutant is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone H3 binding","termid":"FYPO:0007158"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000702"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000702","FYPO:0000707"],"is_obsolete":false,"name":"decreased histone H3-K9Me binding","termid":"FYPO:0008195"}


id: PBO:0060482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nanog homeobox pseudogene 4","termid":"PBO:0060482"}


id: GO:0042982
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving amyloid precursor protein (APP), the precursor of amyloid-beta, a glycoprotein associated with Alzheimer's disease.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein metabolic process","termid":"GO:0019538"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amyloid precursor protein metabolic process","synonyms":[{"name":"APP metabolic process","type":"exact"},{"name":"APP metabolism","type":"exact"},{"name":"amyloid precursor protein metabolism","type":"exact"}],"termid":"GO:0042982"}


id: GO:0046179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of keto-D-gluconate, the anion of keto-D-gluconic acid, an aldonic acid derived from glucose.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"keto-D-gluconate metabolic process","termid":"GO:0019525"},{"relation_name":"is_a","term_name":"ketogluconate biosynthetic process","termid":"GO:0046180"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"keto-D-gluconate biosynthetic process","synonyms":[{"name":"keto-D-gluconate anabolism","type":"exact"},{"name":"keto-D-gluconate biosynthesis","type":"exact"},{"name":"keto-D-gluconate formation","type":"exact"},{"name":"keto-D-gluconate synthesis","type":"exact"}],"termid":"GO:0046179"}


id: SO:0000854
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A homologous_region that is paralogous to another region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"paralogous","termid":"SO:0000859"},{"relation_name":"is_a","term_name":"homologous_region","termid":"SO:0000853"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paralogous_region","secondary_identifiers":["http://en.wikipedia.org/wiki/Paralog#Paralogy"],"synonyms":[{"name":"paralog","type":"exact"},{"name":"paralogous region","type":"exact"},{"name":"paralogue","type":"exact"}],"termid":"SO:0000854"}


id: PBO:0053485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 460","termid":"PBO:0053485"}


id: GO:0022015
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The division of a radial glial cell in the pallium. A radial glial cell is a precursor cell that gives rise to neurons and astrocytes.","definition_xrefs":["GO_REF:0000021","GOC:cls","GOC:dgh","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell division","termid":"GO:0051301"},{"relation_name":"part_of","term_name":"pallium cell proliferation in forebrain","termid":"GO:0022013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"radial glial cell division in pallium","termid":"GO:0022015"}


id: PBO:0083787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein involved in rRNA and snoRNA maturation; competes with TLC1 RNA for binding to Est2p, suggesting a role in negative regulation of telomerase; human homolog inhibits telomerase; contains a G-patch RNA interacting domain","termid":"PBO:0083787"}


id: GO:0160034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of Toll receptor ligand protein activation cascade.","definition_xrefs":["PMID:23632253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of Toll receptor ligand protein activation cascade","termid":"GO:0160033"},{"relation_name":"is_a","term_name":"positive regulation of protein activation cascade","termid":"GO:2000259"},{"relation_name":"positively_regulates","term_name":"Toll receptor ligand protein activation cascade","termid":"GO:0160032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0051604"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0051604"],"is_obsolete":false,"name":"positive regulation of Toll receptor ligand protein activation cascade","termid":"GO:0160034"}


id: PBO:0063014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAGE family member 2B","termid":"PBO:0063014"}


id: GO:0099176
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of retrograde trans-synaptic signaling by a trans-synaptic complex.","definition_xrefs":["GOC:dos","PMID:23209303"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of trans-synaptic signaling","termid":"GO:0099177"},{"relation_name":"regulates","term_name":"retrograde trans-synaptic signaling by trans-synaptic protein complex","termid":"GO:0098942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of retrograde trans-synaptic signaling by trans-synaptic protein complex","synonyms":[{"name":"regulation of trans-synaptic complex mediated retrograde trans-synaptic signaling","type":"related"}],"termid":"GO:0099176"}


id: PR:000027578
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A fungal histone H3.1, initiator methionine removed methylated form that is recognized by the HP1-like protein Swi6 in Schizosaccharomyces pombe. Example: UniProtKB:P09988-1, 2-136, Lys-10, MOD:00663.","definition_xrefs":["PomBase:MAH","PRO:DAN","PMID:11242054"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3.1, initiator methionine removed form (Schizosaccharomyces pombe)","termid":"PR:000027574"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hht1/Me(K9)","pombase_gene_id":"SPAC1834.04","synonyms":[{"name":"Spom-hht1/InitMet-/K9me","type":"exact"},{"name":"hht1/InitMet-/Me:(K10)","type":"exact"},{"name":"hht1/Me(K9)","type":"exact"}],"termid":"PR:000027578"}


id: PBO:0081030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCCH-type containing 11B","termid":"PBO:0081030"}


id: GO:0010285
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + LL-2,6-diaminopimelate = (S)-2,3,4,5-tetrahydrodipicolinate + L-glutamate + H2O + H+.","definition_xrefs":["EC:2.6.1.83","RHEA:23988"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016769","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"L,L-diaminopimelate aminotransferase activity","secondary_identifiers":["GO:0043742","MetaCyc:RXN-7737","KEGG_REACTION:R07613"],"synonyms":[{"name":"LL-2,6-diaminoheptanedioate:2-oxoglutarate aminotransferase activity","type":"exact"},{"name":"LL-DAP aminotransferase activity","type":"related"},{"name":"LL-DAP-AT activity","type":"related"},{"name":"LL-diaminopimelate aminotransferase activity","type":"exact"},{"name":"LL-diaminopimelate transaminase activity","type":"related"}],"termid":"GO:0010285"}


id: GO:0001091
data:
  {"annotated_genes":["SJAG_00095","SJAG_00159"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78064],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001096"},{"annotations":[75239],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001097"}]},"cv_name":"molecular_function","definition":"Binding to a basal RNA polymerase II transcription factor, any of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II and defined as a basal or general transcription factor.","definition_xrefs":["PMID:16858867","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"basal RNA polymerase II transcription machinery binding","termid":"GO:0001099"},{"relation_name":"is_a","term_name":"general transcription initiation factor binding","termid":"GO:0140296"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00095":null,"SJAG_00159":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"RNA polymerase II general transcription initiation factor binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"RNA polymerase II basal transcription factor binding","type":"exact"}],"termid":"GO:0001091","terms_by_termid":{"GO:0001096":null,"GO:0001097":null}}


id: PBO:0047400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FBXO38 divergent transcript","termid":"PBO:0047400"}


id: PBO:0055132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2551","termid":"PBO:0055132"}


id: GO:1903618
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of transdifferentiation.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:22118091"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell differentiation","termid":"GO:0045595"},{"relation_name":"regulates","term_name":"transdifferentiation","termid":"GO:0060290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of transdifferentiation","termid":"GO:1903618"}


id: PBO:0089366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lectin family glycoprotein receptor","termid":"PBO:0089366"}


id: GO:0102223
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4 H+ + 15-cis-4,4'-diapophytoene + 4 FAD = 4,4'-diapolycopene + 4 FADH2. This reaction consists of three successive dehydrogenations that lead to the introduction of three double bonds into 4,4'-diapophytoene (dehydrosqualene), with 4,4'-diapophytofluene, 4,4'-diapo-zeta-carotene and 4,4'-diapolycopene as intermediates, and 4,4'-diapolycopene as the end product.","definition_xrefs":["GOC:pz","PMID:8002598","RHEA:31391"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor","termid":"GO:0052890"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"4,4'-diapophytoene desaturase (4,4'-diaponeurosporene-forming)","secondary_identifiers":["GO:0102225","GO:0102961","EC:1.3.8.2","RHEA:42800","GO:0102962","MetaCyc:RXN-12258","MetaCyc:RXN-12224"],"synonyms":[{"name":"4,4'-diapo-zeta-carotene desaturase activity","type":"narrow"},{"name":"4,4'-diaponeurosporene desaturase activity","type":"narrow"},{"name":"4,4'-diapophytoene desaturase activity","type":"broad"},{"name":"4,4'-diapophytofluene desaturase activity","type":"narrow"}],"termid":"GO:0102223"}


id: PBO:0045119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DMRT like family B with proline rich C-terminal 1","termid":"PBO:0045119"}


id: PBO:0014304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial guanine nucleotide transporter Gcs1 (predicted)","termid":"PBO:0014304"}


id: PBO:0001713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy associated protein Atg24 (predicted)","termid":"PBO:0001713"}


id: GO:0060261
data:
  {"annotated_genes":["SJAG_00297","SJAG_04647","SJAG_00766","SJAG_03421","SJAG_01952","SJAG_02391","SJAG_05203","SJAG_00342","SJAG_00904","SJAG_00150","SJAG_01403","SJAG_03573","SJAG_02494","SJAG_00909","SJAG_03061","SJAG_04705","SJAG_04820","SJAG_01771","SJAG_05341","SJAG_02551","SJAG_03590","SJAG_04099","SJAG_02849","SJAG_03622"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83649,85878,86534,86843,90472,90583,91519,92000,94807,95151,98076,99538,99801,101794,102147,102340,102472,104837,104864,105152,110823,111390,114977],"is_not":false,"summary":null,"term":"GO:0060261"},{"annotations":[111281],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045899"}]},"cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:txnOH","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transcription by RNA polymerase II","termid":"GO:0045944"},{"relation_name":"is_a","term_name":"regulation of transcription initiation by RNA polymerase II","termid":"GO:0060260"},{"relation_name":"is_a","term_name":"positive regulation of DNA-templated transcription initiation","termid":"GO:2000144"},{"relation_name":"positively_regulates","term_name":"transcription initiation at RNA polymerase II promoter","termid":"GO:0006367"}],"gene_count":24,"genes_by_uniquename":{"SJAG_00150":null,"SJAG_00297":null,"SJAG_00342":null,"SJAG_00766":null,"SJAG_00904":null,"SJAG_00909":null,"SJAG_01403":null,"SJAG_01771":null,"SJAG_01952":null,"SJAG_02391":null,"SJAG_02494":null,"SJAG_02551":null,"SJAG_02849":null,"SJAG_03061":null,"SJAG_03421":null,"SJAG_03573":null,"SJAG_03590":null,"SJAG_03622":null,"SJAG_04099":null,"SJAG_04647":null,"SJAG_04705":null,"SJAG_04820":null,"SJAG_05203":null,"SJAG_05341":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0006355","GO:0010467","GO:0006351","GO:0008150"],"is_obsolete":false,"name":"positive regulation of transcription initiation by RNA polymerase II","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of transcription initiation from RNA polymerase II promoter","type":"exact"}],"termid":"GO:0060261","terms_by_termid":{"GO:0045899":null,"GO:0060261":null}}


id: PBO:0042532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 5 regulatory subunit 2","termid":"PBO:0042532"}


id: GO:0010126
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving mycothiol, which consists of N-acetyl-L-cysteine linked to a pseudodisaccharide, D-glucosamine and myo-inositol. Mycothiol is produced in actinomycetes like mycobacteria and serves similar functions to glutathione.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"glycoside metabolic process","termid":"GO:0016137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"mycothiol metabolic process","synonyms":[{"name":"mycothiol metabolism","type":"exact"}],"termid":"GO:0010126"}


id: GO:0008899
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-homoserine + succinyl-CoA = O-succinyl-L-homoserine + CoA.","definition_xrefs":["RHEA:22008","EC:2.3.1.46"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-succinyltransferase activity","termid":"GO:0016750"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016746","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"homoserine O-succinyltransferase activity","secondary_identifiers":["KEGG_REACTION:R01777","MetaCyc:HOMSUCTRAN-RXN"],"synonyms":[{"name":"homoserine O-transsuccinylase activity","type":"broad"},{"name":"homoserine succinyltransferase activity","type":"related"},{"name":"succinyl-CoA:L-homoserine O-succinyltransferase activity","type":"related"}],"termid":"GO:0008899"}


id: PBO:0076302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SYNGAP1 antisense RNA 1","termid":"PBO:0076302"}


id: PBO:0075967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STARD7 antisense RNA 1","termid":"PBO:0075967"}


id: PBO:0109911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin heavy chain 1 pseudogene 28","termid":"PBO:0109911"}


id: PR:Q09874
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC12G12.11c gene.","definition_xrefs":["UniProtKB:Q09874","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C12G12.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC12G12.11c","synonyms":[{"name":"Spom972h-SPAC12G12.11c","type":"exact"}],"termid":"PR:Q09874"}


id: GO:2001253
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of histone H3-K36 trimethylation.","definition_xrefs":["PMID:17948059"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of histone H3-K36 trimethylation (obsolete GO:2001253)","termid":"GO:2001253"}


id: GO:0019536
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving vibriobactin, the major siderophore produced by Vibrio cholerae.","definition_xrefs":["PMID:11112537","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"siderophore metabolic process","termid":"GO:0009237"},{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"},{"relation_name":"is_a","term_name":"organic cyclic compound metabolic process","termid":"GO:1901360"},{"relation_name":"is_a","term_name":"organonitrogen compound metabolic process","termid":"GO:1901564"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"vibriobactin metabolic process","synonyms":[{"name":"vibriobactin metabolism","type":"exact"}],"termid":"GO:0019536"}


id: GO:0010690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes by RNA polymerase II, originating at an RNA polymerase II promoter, as a result of a disturbance in organismal or cellular homeostasis.","definition_xrefs":["GOC:txnOH","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of ribosomal protein gene transcription by RNA polymerase II","termid":"GO:0010688"},{"relation_name":"is_a","term_name":"cellular response to stress","termid":"GO:0033554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"negatively_regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006355"}],"interesting_parent_ids":["GO:0010467","GO:0006355","GO:0008150","GO:0006351"],"is_obsolete":false,"name":"negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter in response to stress","termid":"GO:0010690"}


id: GO:0061897
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: all-trans-retinal + 2 H+ + O2 + 2 reduced [adrenodoxin] = all-trans-3,4-didehydro retinal + 2 H2O + 2 oxidized [adrenodoxin].","definition_xrefs":["PMID:27059013"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"all-trans retinal 3,4-desaturase activity","termid":"GO:0061897"}


id: PBO:0076347
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptotagmin 14","termid":"PBO:0076347"}


id: PBO:0076020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine kinase 16 pseudogene 1","termid":"PBO:0076020"}


id: PBO:0039382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aminomethyltransferase","termid":"PBO:0039382"}


id: GO:1904252
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of bile acid metabolic process.","definition_xrefs":["GOC:bf","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular metabolic process","termid":"GO:0031324"},{"relation_name":"is_a","term_name":"negative regulation of steroid metabolic process","termid":"GO:0045939"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"regulation of bile acid metabolic process","termid":"GO:1904251"},{"relation_name":"negatively_regulates","term_name":"bile acid metabolic process","termid":"GO:0008206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"negative regulation of bile acid metabolic process","synonyms":[{"name":"down regulation of bile acid metabolic process","type":"exact"},{"name":"down regulation of bile acid metabolism","type":"exact"},{"name":"down-regulation of bile acid metabolic process","type":"exact"},{"name":"down-regulation of bile acid metabolism","type":"exact"},{"name":"downregulation of bile acid metabolic process","type":"exact"},{"name":"downregulation of bile acid metabolism","type":"exact"},{"name":"inhibition of bile acid metabolic process","type":"narrow"},{"name":"inhibition of bile acid metabolism","type":"narrow"},{"name":"negative regulation of bile acid metabolism","type":"exact"}],"termid":"GO:1904252"}


id: PBO:0066773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 71","termid":"PBO:0066773"}


id: PBO:0028523
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_acetylation","termid":"PBO:0028523"}


id: PBO:0077503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM220 antisense RNA 1","termid":"PBO:0077503"}


id: MOD:01137
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that is produced by reaction of a lysine residue with 2,2,5,7,8-pentamethylchroman-6-sulfonyl chloride, Pmc chloride, to form N6-(2,2,5,7,8-pentamethylchroman-6-sulfonyl)-L-lysine.","definition_xrefs":["DeltaMass:310"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-arginine residue","termid":"MOD:00902"},{"relation_name":"is_a","term_name":"2,2,5,7,8-pentamethylchroman-6-sulfonyl chloride derivatized residue","termid":"MOD:01120"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N6-(2,2,5,7,8-pentamethylchroman-6-sulfonyl)-L-lysine","synonyms":[{"name":"PMC lysyl","type":"exact"},{"name":"PmcLys","type":"exact"}],"termid":"MOD:01137"}


id: PBO:0078944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Arg (anticodon TCG) 2-1","termid":"PBO:0078944"}


id: PBO:0044607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDB1 and CUL4 associated factor 12 like 1","termid":"PBO:0044607"}


id: PBO:0054656
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2061","termid":"PBO:0054656"}


id: PBO:0061279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear pore associated protein 1 like","termid":"PBO:0061279"}


id: PBO:0075288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 29 pseudogene 1","termid":"PBO:0075288"}


id: PR:Q9HDU5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A galactose-1-phosphate uridylyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11943:SF0","PRO:DNx","OMA:SCHPO04141"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactose-1-phosphate uridylyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPB2B2.10c","secondary_identifiers":["UniProtKB:Q9HDU5"],"synonyms":[{"name":"Spom972h-GALT","type":"exact"},{"name":"UDP-glucose--hexose-1-phosphate uridylyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"gal-1-P uridylyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9HDU5"}


id: GO:0035281
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Transport of pre-microRNAs (pre-miRNAs) from the nucleus to the cytoplasm. Pre-miRNAs are a ~60-70 nucleotide stem loop intermediate in miRNA production, produced by the nuclear cleavage of a primary miRNA (pri-mRNA) transcript. Pre-miRNAs are transported from the nucleus to the cytoplasm where further cleavage occurs to produce a mature miRNA product.","definition_xrefs":["GOC:sl","PMID:14744438"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA export from nucleus","termid":"GO:0006405"},{"relation_name":"part_of","term_name":"miRNA-mediated post-transcriptional gene silencing","termid":"GO:0035195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150","GO:0006913"],"is_obsolete":false,"name":"pre-miRNA export from nucleus","synonyms":[{"name":"pre-microRNA export from cell nucleus","type":"exact"},{"name":"pre-microRNA export from nucleus","type":"related"},{"name":"pre-microRNA export out of nucleus","type":"exact"},{"name":"pre-microRNA transport from nucleus to cytoplasm","type":"exact"},{"name":"pre-microRNA-nucleus export","type":"exact"}],"termid":"GO:0035281"}


id: GO:0015712
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of hexose phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organophosphate ester transport","termid":"GO:0015748"},{"relation_name":"is_a","term_name":"carbohydrate derivative transport","termid":"GO:1901264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"hexose phosphate transport","termid":"GO:0015712"}


id: GO:0052088
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a symbiont modulates the frequency, rate or extent of the jasmonic acid-mediated defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"evasion of host immune response","termid":"GO:0042783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont defense to host-produced jasmonic acid","secondary_identifiers":["GO:0052068","GO:0052069","GO:0052267","GO:0052443","GO:0052073","GO:0052271","GO:0052283","GO:0052082","GO:0052266"],"synonyms":[{"name":"activation by organism of defense-related host SA-mediated signal transduction pathway","type":"narrow"},{"name":"activation by organism of defense-related host jasmonic acid-mediated signal transduction pathway","type":"narrow"},{"name":"activation by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway","type":"narrow"},{"name":"down regulation by symbiont of host jasmonic acid-mediated defense response","type":"narrow"},{"name":"down-regulation by symbiont of host jasmonic acid-mediated defense response","type":"narrow"},{"name":"downregulation by symbiont of host jasmonic acid-mediated defense response","type":"narrow"},{"name":"induction by organism of defense-related host SA-mediated signal transduction pathway","type":"narrow"},{"name":"induction by organism of defense-related host jasmonic acid-mediated signal transduction pathway","type":"narrow"},{"name":"induction by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway","type":"narrow"},{"name":"inhibition by symbiont of host jasmonic acid-mediated defense response","type":"narrow"},{"name":"modulation by organism of defense-related jasmonic acid-mediated signal transduction pathway in other organism involved in symbiotic interaction","type":"narrow"},{"name":"modulation by organism of host JA-mediated defense response","type":"narrow"},{"name":"modulation by organism of jasmonic acid-mediated defense response of other organism involved in symbiotic interaction","type":"narrow"},{"name":"modulation by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway","type":"narrow"},{"name":"negative regulation by organism of defense-related jasmonic acid-mediated signal transduction pathway in other organism involved in symbiotic interaction","type":"narrow"},{"name":"negative regulation by organism of jasmonic acid-mediated defense response of other organism involved in symbiotic interaction","type":"narrow"},{"name":"negative regulation by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway","type":"narrow"},{"name":"negative regulation by symbiont of host jasmonic acid-mediated defense response","type":"narrow"},{"name":"positive regulation by organism of defense-related host SA-mediated signal transduction pathway","type":"narrow"},{"name":"positive regulation by organism of defense-related jasmonic acid-mediated signal transduction pathway in other organism involved in symbiotic interaction","type":"narrow"},{"name":"positive regulation by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway","type":"narrow"},{"name":"stimulation by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway","type":"narrow"},{"name":"suppression by organism of host JA-mediated defense response","type":"exact"},{"name":"suppression by symbiont of host jasmonic acid-mediated defense response","type":"related"},{"name":"up regulation by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway","type":"narrow"},{"name":"up-regulation by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway","type":"narrow"},{"name":"upregulation by organism of defense-related host SA-mediated signal transduction pathway","type":"narrow"},{"name":"upregulation by organism of defense-related host jasmonic acid-mediated signal transduction pathway","type":"narrow"},{"name":"upregulation by symbiont of defense-related host jasmonic acid-mediated signal transduction pathway","type":"narrow"}],"termid":"GO:0052088"}


id: FYPO:0003091
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of chromatin binding by a gene product (usually a protein) at a replication fork pausing site within the eukaryotic rDNA repeat spacer in a mutant is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene, and may normally bind DNA, protein, or both in chromatin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased chromatin binding","termid":"FYPO:0002577"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000702"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000702","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"decreased chromatin binding at rDNA replication fork barrier","synonyms":[{"name":"decreased chromatin binding at ribosomal DNA replication fork barrier","type":"exact"},{"name":"reduced chromatin binding at rDNA replication fork barrier","type":"exact"}],"termid":"FYPO:0003091"}


id: FYPO:0000123
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which vacuoles are larger than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vacuolar morphology during vegetative growth","termid":"FYPO:0000368"},{"relation_name":"is_a","term_name":"large vacuoles","termid":"FYPO:0007821"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"large vacuoles during vegetative growth","synonyms":[{"name":"enlarged vacuoles during vegetative growth","type":"exact"},{"name":"large vacuoles during mitotic cell cycle","type":"related"},{"name":"vacuole organization defects, large vacuoles","type":"exact"}],"termid":"FYPO:0000123"}


id: PBO:0004897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ku domain protein Pku80","termid":"PBO:0004897"}


id: PBO:0078771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (anticodon GTT) 2-3","termid":"PBO:0078771"}


id: PBO:0051296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1D-27 (pseudogene)","termid":"PBO:0051296"}


id: GO:0003800
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A protein involved in an antiviral response.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete antiviral response protein activity (obsolete GO:0003800)","synonyms":[{"name":"antiviral response protein activity","type":"exact"}],"termid":"GO:0003800"}


id: GO:1990016
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Elongated portion of a tanycyte that sticks into the periventricular layer of neuropil where it appears to contact a blood vessel; characterized by numerous cytoplasmic extensions. A tanycyte is a specialized elongated ventricular ependymal cell that has processes that extend to the outer, or pial, surface of the CNS.","definition_xrefs":["ISBN:0195065719","NIF_Subcellular:sao901230115"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"neck portion of tanycyte","synonyms":[{"name":"neck portion","type":"broad"}],"termid":"GO:1990016"}


id: GO:0010796
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the volume of a multivesicular body, a type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles.","definition_xrefs":["GOC:jp","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endosome size","termid":"GO:0051036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of multivesicular body size","termid":"GO:0010796"}


id: GO:0048524
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of a multi-organism process in which a virus is a participant.","definition_xrefs":["GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biological process","termid":"GO:0048518"},{"relation_name":"is_a","term_name":"regulation of viral process","termid":"GO:0050792"},{"relation_name":"positively_regulates","term_name":"viral process","termid":"GO:0016032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of viral process","synonyms":[{"name":"activation of viral life cycle","type":"narrow"},{"name":"positive regulation of viral life cycle","type":"narrow"},{"name":"positive regulation of viral reproduction","type":"narrow"},{"name":"stimulation of viral life cycle","type":"narrow"},{"name":"up regulation of viral life cycle","type":"narrow"},{"name":"up-regulation of viral life cycle","type":"narrow"},{"name":"upregulation of viral life cycle","type":"narrow"}],"termid":"GO:0048524"}


id: PBO:0073439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Scm like with four mbt domains 1","termid":"PBO:0073439"}


id: PBO:0077272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 14A","termid":"PBO:0077272"}


id: PBO:0069115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 364, pseudogene","termid":"PBO:0069115"}


id: PBO:0051128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 2-5","termid":"PBO:0051128"}


id: PBO:0052127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium voltage-gated channel subfamily E regulatory subunit 5","termid":"PBO:0052127"}


id: PBO:0053078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lebercilin LCA5","termid":"PBO:0053078"}


id: PBO:0111966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dsl1/NZR complex secretory pathway protein Sec39","termid":"PBO:0111966"}


id: GO:0021578
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for the hindbrain to attain its fully functional state. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions.","definition_xrefs":["GOC:dgh","GOC:jid","GOC:dph","GOC:cls","ISBN:0838580343","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure maturation","termid":"GO:0071695"},{"relation_name":"part_of","term_name":"central nervous system maturation","termid":"GO:0021626"},{"relation_name":"part_of","term_name":"hindbrain development","termid":"GO:0030902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hindbrain maturation","termid":"GO:0021578"}


id: _global:exemplar_of
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"X is exemplar of Y if X is the best evidence for Y.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exemplar_of","termid":"_global:exemplar_of"}


id: PBO:0004474
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.2.1.70","termid":"PBO:0004474"}


id: FYPO:0003150
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the switch from the monopolar to bipolar mode of cell growth (new end take-off; NETO) occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal NETO","termid":"FYPO:0000147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005568"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005568","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased NETO","synonyms":[{"name":"decreased NETO during mitotic cell cycle","type":"related"},{"name":"decreased NETO during vegetative growth","type":"exact"},{"name":"decreased activation of bipolar cell growth","type":"related"},{"name":"decreased cell growth mode switching, monopolar to bipolar","type":"exact"},{"name":"decreased new end take-off","type":"exact"},{"name":"decreased switch from monopolar to bipolar cell growth","type":"exact"},{"name":"reduced NETO","type":"exact"}],"termid":"FYPO:0003150"}


id: GO:0070717
data:
  {"annotated_genes":["SJAG_00425","SJAG_02808","SJAG_03448","SJAG_04427","SJAG_03214","SJAG_01910","SJAG_04601","SJAG_04271","SJAG_03283","SJAG_01222","SJAG_01650","SJAG_03747"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100419,85657,85261,93252,93677,85619,88077,103841,105321,72016,94648,73650],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008143"}]},"cv_name":"molecular_function","definition":"Binding to a stretch of purines (adenine or guanine) in an RNA molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"single-stranded RNA binding","termid":"GO:0003727"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00425":null,"SJAG_01222":null,"SJAG_01650":null,"SJAG_01910":null,"SJAG_02808":null,"SJAG_03214":null,"SJAG_03283":null,"SJAG_03448":null,"SJAG_03747":null,"SJAG_04271":null,"SJAG_04427":null,"SJAG_04601":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0003674","GO:0003723","GO:0005488"],"is_obsolete":false,"name":"poly-purine tract binding","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0070717","terms_by_termid":{"GO:0008143":null}}


id: PBO:0046620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group W member 1, envelope","termid":"PBO:0046620"}


id: GO:0045956
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of calcium ion-dependent exocytosis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of calcium ion-dependent exocytosis","termid":"GO:0017158"},{"relation_name":"is_a","term_name":"positive regulation of regulated secretory pathway","termid":"GO:1903307"},{"relation_name":"positively_regulates","term_name":"calcium-ion regulated exocytosis","termid":"GO:0017156"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of calcium ion-dependent exocytosis","synonyms":[{"name":"activation of calcium ion-dependent exocytosis","type":"narrow"},{"name":"stimulation of calcium ion-dependent exocytosis","type":"narrow"},{"name":"up regulation of calcium ion-dependent exocytosis","type":"exact"},{"name":"up-regulation of calcium ion-dependent exocytosis","type":"exact"},{"name":"upregulation of calcium ion-dependent exocytosis","type":"exact"}],"termid":"GO:0045956"}


id: PBO:0086462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative metal transporter involved in mitochondrial iron accumulation; MMT1 has a paralog, MMT2, that arose from the whole genome duplication","termid":"PBO:0086462"}


id: PBO:0062402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 25 pseudogene","termid":"PBO:0062402"}


id: PBO:0086695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; intron is predicted but not detected experimentally; YLR464W overlaps the verified gene YRF1-4/YLR466W and two dubious ORFs YLR463C and YLR465C","termid":"PBO:0086695"}


id: GO:0106165
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay.","definition_xrefs":["PMID:30601114","GOC:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of exonucleolytic catabolism of deadenylated mRNA (obsolete GO:0106165)","termid":"GO:0106165"}


id: SO:0000228
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript encoding tryptophanyl tRNA (SO:000271).","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA_primary_transcript","termid":"SO:0000210"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tryptophan_tRNA_primary_transcript","synonyms":[{"name":"tryptophan tRNA primary transcript","type":"exact"}],"termid":"SO:0000228"}


id: PBO:0082170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AdoMet-dependent proline methyltransferase; catalyzes the dimethylation of ribosomal proteins Rpl12 and Rps25 at N-terminal proline residues; has a role in protein synthesis; fusion protein localizes to the cytoplasm","termid":"PBO:0082170"}


id: GO:1905356
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of snRNA pseudouridine synthesis.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:27268497"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of RNA metabolic process","termid":"GO:0051252"},{"relation_name":"regulates","term_name":"snRNA pseudouridine synthesis","termid":"GO:0031120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016073"}],"interesting_parent_ids":["GO:0016073","GO:0008150"],"is_obsolete":false,"name":"regulation of snRNA pseudouridine synthesis","termid":"GO:1905356"}


id: PBO:0067785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 87","termid":"PBO:0067785"}


id: PBO:0048637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gap junction protein alpha 6, pseudogene","termid":"PBO:0048637"}


id: FYPO:0005009
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of serine residues three positions C-terminal to arginine residues (i.e. in Arg-X-X-Ser, or RxxS, sequences) occurs to a lower extent than normal.","definition_xrefs":["PMID:22976295","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete decreased protein serine phosphorylation at RxxS site during vegetative growth (obsolete FYPO:0005009)","synonyms":[{"name":"decreased protein serine phosphorylation at Arg-X-X-Ser site during vegetative growth","type":"exact"},{"name":"decreased protein serine phosphorylation at PAS site during vegetative growth","type":"exact"},{"name":"decreased protein serine phosphorylation at RxxS site during mitotic cell cycle","type":"related"},{"name":"decreased protein serine phosphorylation at arginine-X-X-serine site during vegetative growth","type":"exact"},{"name":"decreased protein serine phosphorylation at phospho-Akt site during vegetative growth","type":"exact"},{"name":"reduced protein serine phosphorylation at RxxS site during vegetative growth","type":"exact"}],"termid":"FYPO:0005009"}


id: GO:0032102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of a response to an external stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to external stimulus","termid":"GO:0032101"},{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"negatively_regulates","term_name":"response to external stimulus","termid":"GO:0009605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of response to external stimulus","synonyms":[{"name":"down regulation of response to external stimulus","type":"exact"},{"name":"down-regulation of response to external stimulus","type":"exact"},{"name":"downregulation of response to external stimulus","type":"exact"},{"name":"inhibition of response to external stimulus","type":"narrow"}],"termid":"GO:0032102"}


id: PBO:0033821
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Supressor of Rad Wee1","termid":"PBO:0033821"}


id: PBO:0059047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MN1 proto-oncogene, transcriptional regulator","termid":"PBO:0059047"}


id: GO:0062110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of DNA recombinase complex disassembly, the disaggregation of a DNA recombinase complex into its constituent components.","definition_xrefs":["PMID:30297419"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex disassembly","termid":"GO:0043242"},{"relation_name":"is_a","term_name":"regulation of DNA recombinase disassembly","termid":"GO:0062109"},{"relation_name":"negatively_regulates","term_name":"DNA recombinase disassembly","termid":"GO:1990986"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of DNA recombinase disassembly","termid":"GO:0062110"}


id: PBO:0068247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 28S ribosomal 4","termid":"PBO:0068247"}


id: PR:O13861
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tcd1 gene.","definition_xrefs":["UniProtKB:O13861","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA threonylcarbamoyladenosine dehydratase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1A6.10","synonyms":[{"name":"Spom972h-tcd1","type":"exact"},{"name":"t(6)A37 dehydratase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13861"}


id: GO:0044555
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency of heart contraction of another organism.","definition_xrefs":["GOC:jl","GOC:ecd","PMID:20923766"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of heart rate","termid":"GO:0010459"},{"relation_name":"is_a","term_name":"modulation of heart rate in another organism","termid":"GO:0044554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of heart rate in another organism","synonyms":[{"name":"negative regulation of heart rate in other organism","type":"exact"}],"termid":"GO:0044555"}


id: PBO:0047880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, BrdU type, common, fra(5)(p13)","termid":"PBO:0047880"}


id: PR:P21534
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cytochrome c oxidase subunit 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR22888:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPMIT.11","secondary_identifiers":["UniProtKB:P21534"],"synonyms":[{"name":"SPMIT.11","type":"related"},{"name":"Spom972h-MT-CO2","type":"exact"},{"name":"cytochrome c oxidase polypeptide II (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P21534"}


id: PBO:0086368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative amidase","termid":"PBO:0086368"}


id: PR:Q9HDZ3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An immature colon carcinoma transcript 1 protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01301","PANTHER:PTHR11075:SF12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 82 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC589.11","secondary_identifiers":["UniProtKB:Q9HDZ3"],"synonyms":[{"name":"Spom972h-ICT1","type":"exact"}],"termid":"PR:Q9HDZ3"}


id: PBO:0031696
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_nuclear_import","termid":"PBO:0031696"}


id: PBO:0080204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vezatin, adherens junctions transmembrane protein","termid":"PBO:0080204"}


id: PBO:0089750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-methylthioribulose-1-phosphate dehydratase, adducin Mde1","termid":"PBO:0089750"}


id: FYPO:0006974
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more triglycerides measured in a cell is too low to detect.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"substance absent from cell during vegetative growth","termid":"FYPO:0001208"},{"relation_name":"is_a","term_name":"decreased cellular triglyceride level during vegetative growth","termid":"FYPO:0005585"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"triglyceride absent from cell","synonyms":[{"name":"TAG absent from cell","type":"exact"},{"name":"triacylglycerol absent from cell","type":"exact"},{"name":"triglyceride absent from cell during mitotic cell cycle","type":"related"},{"name":"triglyceride absent from cell during vegetative growth","type":"exact"}],"termid":"FYPO:0006974"}


id: PBO:0051969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"involucrin","termid":"PBO:0051969"}


id: GO:0002239
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from an oomycetes.","definition_xrefs":["PMID:16497589","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to other organism","termid":"GO:0051707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to oomycetes","termid":"GO:0002239"}


id: PBO:0000442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase X family","termid":"PBO:0000442"}


id: GO:0070198
data:
  {"annotated_genes":["SJAG_00364","SJAG_01378","SJAG_00640","SJAG_00429"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95836,96978,102730,107838],"is_not":false,"summary":null,"term":"GO:0070198"}]},"cv_name":"biological_process","definition":"Any process in which a protein is transported to, or maintained at, the telomeric region of a chromosome.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to chromosome","termid":"GO:0034502"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_00429":null,"SJAG_00640":null,"SJAG_01378":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to chromosome, telomeric region","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"protein localisation to chromosome, telomeric region","type":"exact"},{"name":"protein localization to telomere","type":"exact"}],"termid":"GO:0070198","terms_by_termid":{"GO:0070198":null}}


id: PBO:0062880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OTX2 pseudogene 1","termid":"PBO:0062880"}


id: FYPO:0002557
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the medial cortex is decreased in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to medial cortex during vegetative growth","termid":"FYPO:0000731"},{"relation_name":"is_a","term_name":"decreased protein localization to cell cortex during vegetative growth","termid":"FYPO:0000929"},{"relation_name":"is_a","term_name":"decreased protein localization to cell division site","termid":"FYPO:0002869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein localization to medial cortex during vegetative growth","synonyms":[{"name":"decreased protein localisation to medial cortex during vegetative growth","type":"exact"},{"name":"decreased protein localization to medial cortex during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to medial ring during vegetative growth","type":"exact"},{"name":"reduced protein localization to medial cortex during vegetative growth","type":"exact"}],"termid":"FYPO:0002557"}


id: PBO:0057469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 587","termid":"PBO:0057469"}


id: PBO:0045563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 12","termid":"PBO:0045563"}


id: SO:0000970
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000970 theta_replication (obsolete SO:0000970)","synonyms":[{"name":"theta replication","type":"exact"}],"termid":"SO:0000970"}


id: PR:O14087
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rim1 gene.","definition_xrefs":["UniProtKB:O14087","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"single-stranded DNA-binding protein rim1, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2F3.04c","synonyms":[{"name":"Spom972h-rim1","type":"exact"},{"name":"mitochondrial ssDNA-binding protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14087"}


id: FYPO:0005879
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form cytoplasmic microtubules that are curved to form a \\\"C\\\" shape, i.e. they follow a smooth bend rather than a straight line, with the curve centered at or near the midpoint of the microtubule, during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"curved interphase microtubules","termid":"FYPO:0003327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002399"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000054","FYPO:0002399","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"C-shaped interphase microtubules","synonyms":[{"name":"C-shaped cytoplasmic microtubules during mitotic interphase","type":"exact"},{"name":"C-shaped interphase cytoplasmic microtubules","type":"exact"},{"name":"C-shaped interphase microtubules during mitotic cell cycle","type":"related"},{"name":"C-shaped interphase microtubules during vegetative growth","type":"exact"},{"name":"curved C-shaped interphase microtubules","type":"exact"}],"termid":"FYPO:0005879"}


id: PBO:0075411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm acrosome associated 7","termid":"PBO:0075411"}


id: GO:0051234
data:
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id: GO:0039691
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id: GO:0048737
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of an appendage over time, from its formation in the imaginal disc to the mature structure. An appendage is an organ or part that is attached to the trunk of an organism.","definition_xrefs":["GOC:mtg_sensu","GOC:rc","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"appendage development","termid":"GO:0048736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"imaginal disc-derived appendage development","termid":"GO:0048737"}


id: SO:0002377
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  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that codes for U14_snoRNA. U14 small nucleolar RNA (U14 snoRNA) is required for early cleavages of eukaryotic precursor rRNAs. In yeasts, this molecule possess a stem-loop region (known as the Y-domain) which is essential for function. A similar structure, but with a different consensus sequence, is found in plants, but is absent in vertebrates.","direct_ancestors":[{"relation_name":"is_a","term_name":"C_D_box_snoRNA_gene","termid":"SO:0002375"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U14_snoRNA_gene","synonyms":[{"name":"small nucleolar RNA U14 gene, snoRNA U14 gene, U14 small nucleolar RNA gene, U14 snoRNA gene","type":"exact"}],"termid":"SO:0002377"}


id: PBO:0063889
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class P pseudogene 2","termid":"PBO:0063889"}


id: PATO:0000385
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000385 hardness value (obsolete PATO:0000385)","termid":"PATO:0000385"}


id: PBO:0068236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 18S ribosomal N2","termid":"PBO:0068236"}


id: PBO:0069727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1008, pseudogene","termid":"PBO:0069727"}


id: PBO:0043338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CLN8 transmembrane ER and ERGIC protein","termid":"PBO:0043338"}


id: PATO:0000217
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000217 immune function (obsolete PATO:0000217)","termid":"PATO:0000217"}


id: PBO:0001815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDR subfamily","termid":"PBO:0001815"}


id: PBO:0050608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxysteroid 17-beta dehydrogenase 2","termid":"PBO:0050608"}


id: PBO:0030717
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_glucosyltransferase_activity","termid":"PBO:0030717"}


id: GO:0045978
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nucleosides.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nucleoside metabolic process","termid":"GO:0009118"},{"relation_name":"is_a","term_name":"negative regulation of nucleobase-containing compound metabolic process","termid":"GO:0045934"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"negatively_regulates","term_name":"nucleoside metabolic process","termid":"GO:0009116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"negative regulation of nucleoside metabolic process","synonyms":[{"name":"down regulation of nucleoside metabolic process","type":"exact"},{"name":"down-regulation of nucleoside metabolic process","type":"exact"},{"name":"downregulation of nucleoside metabolic process","type":"exact"},{"name":"inhibition of nucleoside metabolic process","type":"narrow"},{"name":"negative regulation of nucleoside metabolism","type":"exact"}],"termid":"GO:0045978"}


id: GO:1905273
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of proton-transporting ATP synthase activity, rotational mechanism.","definition_xrefs":["GOC:als","GOC:TermGenie","GO_REF:0000059","PMID:21106936"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of ligase activity","termid":"GO:0051351"},{"relation_name":"is_a","term_name":"regulation of proton-transporting ATP synthase activity, rotational mechanism","termid":"GO:1905271"},{"relation_name":"is_a","term_name":"positive regulation of cation channel activity","termid":"GO:2001259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"positive regulation of proton-transporting ATP synthase activity, rotational mechanism","synonyms":[{"name":"activation of H+-transporting ATP synthase activity","type":"narrow"},{"name":"activation of hydrogen ion translocating F-type ATPase activity","type":"narrow"},{"name":"activation of hydrogen ion transporting ATP synthase activity, rotational mechanism","type":"narrow"},{"name":"activation of hydrogen ion transporting two-sector ATPase activity","type":"narrow"},{"name":"activation of proton-transporting ATP synthase activity, rotational mechanism","type":"narrow"},{"name":"positive regulation of H+-transporting ATP synthase activity","type":"exact"},{"name":"positive regulation of hydrogen ion translocating F-type ATPase activity","type":"exact"},{"name":"positive regulation of hydrogen ion transporting ATP synthase activity, rotational mechanism","type":"exact"},{"name":"positive regulation of hydrogen ion transporting two-sector ATPase activity","type":"exact"},{"name":"up regulation of H+-transporting ATP synthase activity","type":"exact"},{"name":"up regulation of hydrogen ion translocating F-type ATPase activity","type":"exact"},{"name":"up regulation of hydrogen ion transporting ATP synthase activity, rotational mechanism","type":"exact"},{"name":"up regulation of hydrogen ion transporting two-sector ATPase activity","type":"exact"},{"name":"up regulation of proton-transporting ATP synthase activity, rotational mechanism","type":"exact"},{"name":"up-regulation of H+-transporting ATP synthase activity","type":"exact"},{"name":"up-regulation of hydrogen ion translocating F-type ATPase activity","type":"exact"},{"name":"up-regulation of hydrogen ion transporting ATP synthase activity, rotational mechanism","type":"exact"},{"name":"up-regulation of hydrogen ion transporting two-sector ATPase activity","type":"exact"},{"name":"up-regulation of proton-transporting ATP synthase activity, rotational mechanism","type":"exact"},{"name":"upregulation of H+-transporting ATP synthase activity","type":"exact"},{"name":"upregulation of hydrogen ion translocating F-type ATPase activity","type":"exact"},{"name":"upregulation of hydrogen ion transporting ATP synthase activity, rotational mechanism","type":"exact"},{"name":"upregulation of hydrogen ion transporting two-sector ATPase activity","type":"exact"},{"name":"upregulation of proton-transporting ATP synthase activity, rotational mechanism","type":"exact"}],"termid":"GO:1905273"}


id: PBO:0052303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KH-type splicing regulatory protein pseudogene 1","termid":"PBO:0052303"}


id: GO:1904479
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of intestinal absorption.","definition_xrefs":["GO_REF:0000058","GOC:BHF","GOC:TermGenie","PMID:12469120","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of digestive system process","termid":"GO:0060457"},{"relation_name":"is_a","term_name":"regulation of intestinal absorption","termid":"GO:1904478"},{"relation_name":"negatively_regulates","term_name":"intestinal absorption","termid":"GO:0050892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of intestinal absorption","synonyms":[{"name":"down regulation of intestinal absorption","type":"exact"},{"name":"down-regulation of intestinal absorption","type":"exact"},{"name":"downregulation of intestinal absorption","type":"exact"},{"name":"inhibition of intestinal absorption","type":"narrow"}],"termid":"GO:1904479"}


id: PBO:0041263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C1q binding protein","termid":"PBO:0041263"}


id: GO:0034202
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the movement of a glycolipid from the cytosolic to the exoplasmic leaftlet of a membrane, using energy from the hydrolysis of ATP.","definition_xrefs":["GOC:krc","PMID:11807558"],"direct_ancestors":[{"relation_name":"is_a","term_name":"floppase activity","termid":"GO:0140328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140303"}],"interesting_parent_ids":["GO:0003674","GO:0140303","GO:0005215"],"is_obsolete":false,"name":"glycolipid floppase activity","secondary_identifiers":["Reactome:R-HSA-446212","Reactome:R-HSA-4570573"],"synonyms":[{"name":"ATP-dependent intramembrane glycolipid transporter activity","type":"broad"},{"name":"ATPase-coupled intramembrane glycolipid transporter activity","type":"broad"},{"name":"glycolipid floppase activity (cytosolic to exoplasmic leaftlet)","type":"exact"},{"name":"glycolipid-translocating activity","type":"broad"}],"termid":"GO:0034202"}


id: PBO:0047329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fas binding factor 1","termid":"PBO:0047329"}


id: PBO:0061827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OFD1 pseudogene 17","termid":"PBO:0061827"}


id: PATO:0000838
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id: MOD:01659
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id: PBO:0060279
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id: GO:0090107
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id: GO:0051276
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