# genes

id: YPR170W-B
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_03962":null,"YPR170W-B":null},"has_protein_features":false,"ortholog_annotations":[{"gene_uniquename":"YPR170W-B","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_03962","reference_uniquename":"PMID:29761456"}],"product":"Putative, non-essential component vacuolar ATPase; conserved in fungi; SWAT-GFP fusion protein localizes to vacuole membrane; partially overlaps the dubious genes YPR169W-A, YPR170W-A and YRP170C","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000028515","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR170W-B"}


id: YPR171W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"name":"BSP1","product":"Adapter that links synaptojanins to the cortical actin cytoskeleton; the synaptojanins are Inp52p and Inp53p","secondary_identifier":"SGD:S000006375","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR171W"}


id: YPR172W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_02770":null,"YPR172W":null},"has_protein_features":false,"ortholog_annotations":[{"gene_uniquename":"YPR172W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_02770","reference_uniquename":"PMID:29761456"}],"product":"Protein of unknown function; predicted to encode a pyridoxal 5'-phosphate synthase based on sequence similarity but purified protein does not possess this activity, nor does it bind flavin mononucleotide (FMN); transcriptionally activated by Yrm1p along with genes involved in multidrug resistance; YPR172W has a paralog, YLR456W, that arose from the whole genome duplication","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006376","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR172W"}


id: YPR173C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_03892":null,"YPR173C":null},"has_protein_features":false,"name":"VPS4","ortholog_annotations":[{"gene_uniquename":"YPR173C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_03892","reference_uniquename":"PMID:29761456"}],"product":"AAA-ATPase involved in multivesicular body (MVB) protein sorting; ATP-bound Vps4p localizes to endosomes and catalyzes ESCRT-III disassembly and membrane release; ATPase activity is activated by Vta1p; regulates cellular sterol metabolism","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006377","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR173C"}


id: YPR174C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"name":"CSA1","product":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery; potential Cdc28p substrate; binds phosphatidylinositols and phosphatidylethanolamine in a large-scale study; relative distribution to foci at the nuclear periphery increases upon DNA replication stress; YPR174C has a paralog, NBP1, that arose from the whole genome duplication","secondary_identifier":"SGD:S000006378","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR174C"}


id: YPR175W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_02667":null,"YPR175W":null},"has_protein_features":false,"name":"DPB2","ortholog_annotations":[{"gene_uniquename":"YPR175W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_02667","reference_uniquename":"PMID:29761456"}],"product":"Second largest subunit of DNA polymerase II (DNA polymerase epsilon); required for maintenance of fidelity of chromosomal replication; essential motif in C-terminus is required for formation of the four-subunit Pol epsilon; expression peaks at the G1/S phase boundary; Cdc28p substrate","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006379","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR175W"}


id: YPR176C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_04434":null,"YPR176C":null},"has_protein_features":false,"name":"BET2","ortholog_annotations":[{"gene_uniquename":"YPR176C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_04434","reference_uniquename":"PMID:29761456"}],"product":"Beta subunit of Type II geranylgeranyltransferase; required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p; human homolog RABGGTB can complement yeast BET2 mutant","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006380","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR176C"}


id: YPR177C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"product":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the 5' end of the essential PRP4 gene encoding a component of the U4/U6-U5 snRNP complex","secondary_identifier":"SGD:S000006381","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR177C"}


id: YPR178W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_00531":null,"YPR178W":null},"has_protein_features":false,"name":"PRP4","ortholog_annotations":[{"gene_uniquename":"YPR178W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_00531","reference_uniquename":"PMID:29761456"}],"product":"Splicing factor; component of the U4/U6-U5 snRNP complex","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006382","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR178W"}


id: YPR179C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_03685":null,"YPR179C":null},"has_protein_features":false,"name":"HDA3","ortholog_annotations":[{"gene_uniquename":"YPR179C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_03685","reference_uniquename":"PMID:29761456"}],"product":"Subunit of HDA1 histone deacetylase complex; tetrameric trichostatin A-sensitive class II histone deacetylase complex contains Hda1p homodimer and an Hda2p-Hda3p heterodimer; required for activity of complex; relocalizes to cytosol in response to hypoxia; similar to Hda2p; the HDA1 histone deacetylase complex regulates aging through trehalose metabolism","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006383","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR179C"}


id: YPR180W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_05032":null,"YPR180W":null},"has_protein_features":false,"name":"AOS1","ortholog_annotations":[{"gene_uniquename":"YPR180W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_05032","reference_uniquename":"PMID:29761456"}],"product":"Subunit of heterodimeric nuclear SUMO activating enzyme E1 with Uba2p; activates Smt3p (SUMO) before its conjugation to proteins (sumoylation), which may play a role in protein targeting; essential for viability; relocalizes to the cytosol in response to hypoxia","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006384","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR180W"}


id: YPR181C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_02539":null,"SJAG_03153":null,"YPR181C":null},"has_protein_features":false,"name":"SEC23","ortholog_annotations":[{"gene_uniquename":"YPR181C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_02539","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"YPR181C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_03153","reference_uniquename":"PMID:29761456"}],"product":"GTPase-activating protein, stimulates the GTPase activity of Sar1p; component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat, involved in ER to Golgi transport; substrate of Ubp3/Bre5 complex; ubiquitylated by Ub-ligase Rsp5p; proteasome-mediated degradation of Sec23p is regulated by Cdc48p","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006385","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR181C"}


id: YPR182W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_02843":null,"YPR182W":null},"has_protein_features":false,"name":"SMX3","ortholog_annotations":[{"gene_uniquename":"YPR182W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_02843","reference_uniquename":"PMID:29761456"}],"product":"Core Sm protein Sm F; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Sme1p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm F","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006386","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR182W"}


id: YPR183W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_02903":null,"YPR183W":null},"has_protein_features":false,"name":"DPM1","ortholog_annotations":[{"gene_uniquename":"YPR183W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_02903","reference_uniquename":"PMID:29761456"}],"product":"Dolichol phosphate mannose (Dol-P-Man) synthase of ER membrane; catalyzes formation of Dol-P-Man from Dol-P and GDP-Man; required for biosynthesis of glycosyl phosphatidylinositol (GPI) membrane anchor, as well as O-mannosylation and protein N- and O-linked glycosylation; human homolog DPM1 can complement yeast mutant strains","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006387","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR183W"}


id: YPR184W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"name":"GDB1","product":"Glycogen debranching enzyme; contains glucanotranferase and alpha-1,6-amyloglucosidase activities; required for glycogen degradation; phosphorylated in mitochondria; activity is inhibited by Igd1p; protein abundance increases in response to DNA replication stress","secondary_identifier":"SGD:S000006388","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR184W"}


id: YPR185W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_01274":null,"YPR185W":null},"has_protein_features":false,"name":"ATG13","ortholog_annotations":[{"gene_uniquename":"YPR185W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_01274","reference_uniquename":"PMID:29761456"}],"product":"Regulatory subunit of the Atg1p signaling complex; stimulates Atg1p kinase activity; required for vesicle formation during autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway; contains a HORMA domain required for autophagy and for recruitment of the phosphatidylinositol 3-kinase complex subunit Atg14p to the pre-autophagosomal structure","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006389","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR185W"}


id: YPR186C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_00067":null,"YPR186C":null},"has_protein_features":false,"name":"PZF1","ortholog_annotations":[{"gene_uniquename":"YPR186C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_00067","reference_uniquename":"PMID:29761456"}],"product":"Transcription factor IIIA (TFIIIA); essential DNA binding protein required for transcription of 5S rRNA by RNA polymerase III; not involved in transcription of other RNAP III genes; nine conserved zinc fingers; may also bind 5S rRNA","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006390","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR186C"}


id: YPR187W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_04261":null,"YPR187W":null},"has_protein_features":false,"name":"RPO26","ortholog_annotations":[{"gene_uniquename":"YPR187W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_04261","reference_uniquename":"PMID:29761456"}],"product":"RNA polymerase subunit ABC23; common to RNA polymerases I, II, and III; part of central core; similar to bacterial omega subunit","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006391","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR187W"}


id: YPR188C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_01665":null,"YPR188C":null},"has_protein_features":false,"name":"MLC2","ortholog_annotations":[{"gene_uniquename":"YPR188C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_01665","reference_uniquename":"PMID:29761456"}],"product":"Regulatory light chain for the type II myosin Myo1p; binds to an IQ motif of Myo1p, localization to the bud neck depends on Myo1p; involved in the disassembly of the Myo1p ring","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006392","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR188C"}


id: YPR189W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_03805":null,"YPR189W":null},"has_protein_features":false,"name":"SKI3","ortholog_annotations":[{"gene_uniquename":"YPR189W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_03805","reference_uniquename":"PMID:29761456"}],"product":"Ski complex component and TPR protein; mediates 3'-5' RNA degradation by the cytoplasmic exosome; null mutants have superkiller phenotype of increased viral dsRNAs and are synthetic lethal with mutations in 5'-3' mRNA decay; mutations in the human ortholog, TTC37, causes Syndromic diarrhea/Trichohepatoenteric (SD/THE) syndrome","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006393","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR189W"}


id: YPR190C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_00619":null,"YPR190C":null},"has_protein_features":false,"name":"RPC82","ortholog_annotations":[{"gene_uniquename":"YPR190C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_00619","reference_uniquename":"PMID:29761456"}],"product":"RNA polymerase III subunit C82","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006394","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR190C"}


id: YPR191W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_00755":null,"YPR191W":null},"has_protein_features":false,"name":"QCR2","ortholog_annotations":[{"gene_uniquename":"YPR191W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_00755","reference_uniquename":"PMID:29761456"}],"product":"Subunit 2 of ubiquinol cytochrome-c reductase (Complex III); Complex III is a component of the mitochondrial inner membrane electron transport chain; phosphorylated; transcription is regulated by Hap1p, Hap2p/Hap3p, and heme","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006395","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR191W"}


id: YPR192W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"name":"AQY1","product":"Spore-specific water channel; mediates the transport of water across cell membranes, developmentally controlled; may play a role in spore maturation, probably by allowing water outflow, may be involved in freeze tolerance","secondary_identifier":"SGD:S000006396","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR192W"}


id: YPR193C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_03288":null,"YPR193C":null},"has_protein_features":false,"name":"HPA2","ortholog_annotations":[{"gene_uniquename":"YPR193C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_03288","reference_uniquename":"PMID:29761456"}],"product":"Tetrameric histone acetyltransferase; has similarity to Gcn5p, Hat1p, Elp3p, and Hpa3p; acetylates histones H3 and H4 in vitro and exhibits autoacetylation activity; also acetylates polyamines","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006397","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR193C"}


id: YPR194C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_00922":null,"SJAG_01660":null,"YPR194C":null},"has_protein_features":false,"name":"OPT2","ortholog_annotations":[{"gene_uniquename":"YPR194C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_00922","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"YPR194C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_01660","reference_uniquename":"PMID:29761456"}],"product":"Oligopeptide transporter; localized to peroxisomes and affects glutathione redox homeostasis; also localizes to the plasma membrane (PM) and to the late Golgi, and has a role in maintenance of lipid asymmetry between the inner and outer leaflets of the PM; member of the OPT family, with potential orthologs in S. pombe and C. albicans; also plays a role in formation of mature vacuoles and in polarized cell growth","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006398","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR194C"}


id: YPR195C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"product":"Putative protein of unknown function; conserved across S. cerevisiae strains","secondary_identifier":"SGD:S000006399","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR195C"}


id: YPR196W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"product":"Putative maltose-responsive transcription factor","secondary_identifier":"SGD:S000006400","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR196W"}


id: YPR197C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"product":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps ORF SGE1/YPR198W","secondary_identifier":"SGD:S000006401","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR197C"}


id: YPR198W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_01336":null,"SJAG_01636":null,"SJAG_01923":null,"SJAG_04715":null,"SJAG_04983":null,"YPR198W":null},"has_protein_features":false,"name":"SGE1","ortholog_annotations":[{"gene_uniquename":"YPR198W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_01336","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"YPR198W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_01636","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"YPR198W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_01923","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"YPR198W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_04715","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"YPR198W","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_04983","reference_uniquename":"PMID:29761456"}],"product":"Plasma membrane multidrug transporter; member of the major facilitator superfamily; acts as an extrusion permease; partial multicopy suppressor of gal11 mutations","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006402","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR198W"}


id: YPR199C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"name":"ARR1","product":"Transcriptional activator of the basic leucine zipper (bZIP) family; required for transcription of genes involved in resistance to arsenic compounds; directly binds trivalent arsenic (As(III)) as does K. lactis ortholog, KIYAP8","secondary_identifier":"SGD:S000006403","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR199C"}


id: YPR200C
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","genes_by_uniquename":{"SJAG_04166":null,"YPR200C":null},"has_protein_features":false,"name":"ARR2","ortholog_annotations":[{"gene_uniquename":"YPR200C","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_04166","reference_uniquename":"PMID:29761456"}],"product":"Arsenate reductase required for arsenate resistance; converts arsenate to arsenite which can then be exported from cells by Arr3p","references_by_uniquename":{"PMID:29761456":null},"secondary_identifier":"SGD:S000006404","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR200C"}


id: YPR201W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"name":"ARR3","product":"Plasma membrane metalloid/H+ antiporter; member of bile/arsenite/riboflavin transporter (BART) superfamily; transports arsenite and antimonite; required for resistance to arsenic compounds; transcription is activated by Arr1p in the presence of arsenite; protein displays 10 transmembrane segments with cytoplasmically oriented N- and C-terminal domains","secondary_identifier":"SGD:S000006405","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR201W"}


id: YPR202W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"product":"Putative protein of unknown function; similar to telomere-encoded helicases; down-regulated at low calcium levels; YPR202W is not an essential gene; transcript is predicted to be spliced but there is no evidence that it is spliced in vivo","secondary_identifier":"SGD:S000006406","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR202W"}


id: YPR203W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"product":"Putative protein of unknown function","secondary_identifier":"SGD:S000006407","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR203W"}


id: YPR204C-A
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"product":"Protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching","secondary_identifier":"SGD:S000028727","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR204C-A"}


id: YPR204W
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","has_protein_features":false,"product":"DNA helicase encoded within the telomeric Y' element; Y' -helicase protein 1","secondary_identifier":"SGD:S000006408","taxonid":4932,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniquename":"YPR204W"}


# alleles

id: SJAG_00028:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rga6","product":"RhoGAP for Cdc42, Rga6","uniquename":"SJAG_00028"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rga4delta rga6delta","display_uniquename":"rga4delta__rga6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]}]},{"display_name":"rga6delta","display_uniquename":"rga6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]}]},{"display_name":"rga6delta wee1-as8(T582G aa)","display_uniquename":"rga6delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"rga6delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abolished geometry scaling","termid":"FYPO:0007783"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abolished polar cell growth","termid":"FYPO:0004105"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000004","FYPO:0001320","FYPO:0000002","FYPO:0000005"],"is_obsolete":false,"name":"viable vegetative cell with increased cell diameter","termid":"FYPO:0006616"}],"references_by_uniquename":{},"uniquename":"SJAG_00028:allele-1"}


id: SJAG_00118:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mid2","product":"medial ring protein, anillin Mid2","uniquename":"SJAG_00118"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mid1delta mid2delta","display_uniquename":"mid1delta__mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]},{"display_name":"mid2delta","display_uniquename":"mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]}],"name":"mid2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000631","FYPO:0000032","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"multiseptate vegetative cell","termid":"FYPO:0000118"}],"references_by_uniquename":{},"uniquename":"SJAG_00118:allele-1"}


id: SJAG_00124:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"product":"NRG1-like transcriptional repressor, zinc finger C2H2-type","uniquename":"SJAG_00124"},"genes_by_uniquename":{},"genotypes":[{"display_name":"SJAG_00124delta","display_uniquename":"SJAG_00124delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00124:allele-1","expression":"Null"}]}]},{"display_name":"SJAG_00124delta sty1delta","display_uniquename":"SJAG_00124delta__sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00124:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}],"name":"SJAG_00124delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased mycelial expansion","termid":"FYPO:0007779"}],"references_by_uniquename":{},"uniquename":"SJAG_00124:allele-1"}


id: SJAG_00266:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"atf1","product":"DNA-binding transcription factor, Atf-CREB family Atf1","uniquename":"SJAG_00266"},"genes_by_uniquename":{},"genotypes":[{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]}],"name":"atf1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0000003","FYPO:0002060","FYPO:0005447","FYPO:0002058","FYPO:0002057"],"is_obsolete":false,"name":"abolished cell population growth at high temperature","termid":"FYPO:0004481"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"decreased mating efficiency","termid":"FYPO:0000708"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased quorum sensing response","termid":"FYPO:0007824"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"elongated vegetative cell","termid":"FYPO:0001122"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased hyphal branching","termid":"FYPO:0007777"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased hyphal length","termid":"FYPO:0007775"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased invasive hyphal growth","termid":"FYPO:0007774"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0005447","FYPO:0002683","FYPO:0000003","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to caffeine during vegetative growth","termid":"FYPO:0000097"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0005447","FYPO:0000139","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to latrunculin A","termid":"FYPO:0000107"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000139","FYPO:0005447","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to oxidative stress","termid":"FYPO:0000726"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to salt stress","termid":"FYPO:0000271"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0002683","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to sodium dodecyl sulfate","termid":"FYPO:0000841"}],"references_by_uniquename":{},"uniquename":"SJAG_00266:allele-1"}


id: SJAG_00364:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad3","product":"ATR checkpoint kinase Rad3","uniquename":"SJAG_00364"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad3delta","display_uniquename":"rad3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00364:allele-1","expression":"Null"}]}]}],"name":"rad3delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0002683","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002683","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000139","FYPO:0002057","FYPO:0000003","FYPO:0001985","FYPO:0002058","FYPO:0002060","FYPO:0005447"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_00364:allele-1"}


id: SJAG_00409:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"gpd1","product":"glycerol-3-phosphate dehydrogenase Gpd1","uniquename":"SJAG_00409"},"genes_by_uniquename":{},"genotypes":[{"display_name":"gpd1delta","display_uniquename":"gpd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00409:allele-1","expression":"Null"}]}]}],"name":"gpd1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0005568"],"is_obsolete":false,"name":"abnormal vegetative cell polarity","termid":"FYPO:0000026"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0002057","FYPO:0005447","FYPO:0000003","FYPO:0001985","FYPO:0002058","FYPO:0000139","FYPO:0002060"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000004","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"inviable vegetative cell","termid":"FYPO:0001489"}],"references_by_uniquename":{},"uniquename":"SJAG_00409:allele-1"}


id: SJAG_00426:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"P363S","gene":{"name":"bbl1","product":"ER phosphatidate cytidylyltransferase Bbl1","uniquename":"SJAG_00426"},"genes_by_uniquename":{},"genotypes":[{"display_name":"bbl1-P363S(aa)","display_uniquename":"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00426:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"bbl1-P363S","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal lipid droplet morphology","termid":"FYPO:0000356"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal tubular endoplasmic reticulum morphology","termid":"FYPO:0006433"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular diglyceride level","termid":"FYPO:0004695"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular triglyceride level during vegetative growth","termid":"FYPO:0002227"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0000257","FYPO:0002058","FYPO:0000139","FYPO:0002060"],"is_obsolete":false,"name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"references_by_uniquename":{},"uniquename":"SJAG_00426:allele-1"}


id: SJAG_00429:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad26","product":"ATRIP, ATR checkpoint kinase regulatory subunit Rad26","uniquename":"SJAG_00429"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad26delta","display_uniquename":"rad26delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00429:allele-1","expression":"Null"}]}]}],"name":"rad26delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0002683","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000139","FYPO:0002057","FYPO:0000003","FYPO:0001985","FYPO:0002058","FYPO:0002060","FYPO:0005447"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_00429:allele-1"}


id: SJAG_00514:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"scd1","product":"RhoGEF Scd1","uniquename":"SJAG_00514"},"genes_by_uniquename":{},"genotypes":[{"display_name":"scd1delta","display_uniquename":"scd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00514:allele-1","expression":"Null"}]}]}],"name":"scd1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abolished polar cell growth","termid":"FYPO:0004105"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0002057","FYPO:0005447","FYPO:0000003","FYPO:0001985","FYPO:0002058","FYPO:0000139","FYPO:0002060"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000139","FYPO:0002057","FYPO:0000003","FYPO:0001985","FYPO:0002058","FYPO:0002060","FYPO:0005447"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000004","FYPO:0001320","FYPO:0000005","FYPO:0000002"],"is_obsolete":false,"name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"references_by_uniquename":{},"uniquename":"SJAG_00514:allele-1"}


id: SJAG_00601:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rip1","product":"Rieske iron-sulfur protein, ubiquinol-cytochrome-c reductase complex subunit 5, Rip1","uniquename":"SJAG_00601"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rip1delta","display_uniquename":"rip1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00601:allele-1","expression":"Null"}]}]}],"name":"rip1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000301","FYPO:0000257"],"is_obsolete":false,"name":"normal mating","termid":"FYPO:0000760"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal spore germination","termid":"FYPO:0000579"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal sporulation","termid":"FYPO:0000590"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0000257","FYPO:0002058","FYPO:0000139","FYPO:0002060"],"is_obsolete":false,"name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"references_by_uniquename":{},"uniquename":"SJAG_00601:allele-1"}


id: SJAG_00610:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pck2","product":"protein kinase C (PKC)-like Pck2","uniquename":"SJAG_00610"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pck2delta","display_uniquename":"pck2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00610:allele-1","expression":"Null"}]}]}],"name":"pck2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0002494","FYPO:0005447","FYPO:0002274"],"is_obsolete":false,"name":"abolished protein phosphorylation","termid":"FYPO:0002678"},{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0002494","FYPO:0001985","FYPO:0002274","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein phosphorylation during vegetative growth","termid":"FYPO:0001838"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0002682","FYPO:0005447"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002683","FYPO:0001985","FYPO:0005447","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to caspofungin","termid":"FYPO:0000079"}],"references_by_uniquename":{},"uniquename":"SJAG_00610:allele-1"}


id: SJAG_00871:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"cut3-T19E","gene":{"name":"cut3","product":"condensin complex SMC subunit Smc4","uniquename":"SJAG_00871"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"cut3-T19E","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal cell cycle arrest in mitotic anaphase","termid":"FYPO:0000619"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000004","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"inviable vegetative cell","termid":"FYPO:0001489"}],"references_by_uniquename":{},"uniquename":"SJAG_00871:allele-1"}


id: SJAG_00993:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"byr1","product":"MAP kinase kinase Byr1","uniquename":"SJAG_00993"},"genes_by_uniquename":{},"genotypes":[{"display_name":"byr1delta","display_uniquename":"byr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00993:allele-1","expression":"Null"}]}]}],"name":"byr1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_00993:allele-1"}


id: SJAG_01050:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nur1","product":"Lem2-Nur1 complex subunit Nur1","uniquename":"SJAG_01050"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nur1delta","display_uniquename":"nur1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]}]},{"display_name":"nur1delta vps4delta","display_uniquename":"nur1delta__vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}],"name":"nur1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to heterochromatin during vegetative growth","termid":"FYPO:0001132"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to nuclear envelope during vegetative growth","termid":"FYPO:0007073"}],"references_by_uniquename":{},"uniquename":"SJAG_01050:allele-1"}


id: SJAG_01081:allele-1
data:
  {"allele_type":"nonsense_mutation","alleles_by_uniquename":{},"description":"S427>stop","gene":{"name":"ade6","product":"phosphoribosylaminoimidazole carboxylase Ade6","uniquename":"SJAG_01081"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ade6-domE(S427>stop)","display_uniquename":"ade6-domE-S427>stop-nonsense_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01081:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"ade6-domE","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"growth auxotrophic for adenine","termid":"FYPO:0000747"}],"references_by_uniquename":{},"uniquename":"SJAG_01081:allele-1"}


id: SJAG_01081:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"Q262A","gene":{"name":"ade6","product":"phosphoribosylaminoimidazole carboxylase Ade6","uniquename":"SJAG_01081"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ade6-domK(Q262A aa)","display_uniquename":"ade6-domK-Q262A-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01081:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"ade6-domK","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"growth auxotrophic for adenine","termid":"FYPO:0000747"}],"references_by_uniquename":{},"uniquename":"SJAG_01081:allele-2"}


id: SJAG_01081:allele-3
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ade6","product":"phosphoribosylaminoimidazole carboxylase Ade6","uniquename":"SJAG_01081"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ade6delta","display_uniquename":"ade6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01081:allele-3","expression":"Null"}]}]}],"name":"ade6delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"growth auxotrophic for adenine","termid":"FYPO:0000747"}],"references_by_uniquename":{},"uniquename":"SJAG_01081:allele-3"}


id: SJAG_01113:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"R47K","gene":{"product":"mating-type transcription factor (Pc-like)","uniquename":"SJAG_01113"},"genes_by_uniquename":{},"genotypes":[],"name":"mat-Pc-R47K","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_01113:allele-1"}


id: SJAG_01143:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mid1","product":"anillin-related medial ring protein Mid1","uniquename":"SJAG_01143"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cdc15-A(L264P,P442T aa) mid1delta","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type__mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},{"display_name":"mid1delta","display_uniquename":"mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},{"display_name":"mid1delta mid2delta","display_uniquename":"mid1delta__mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]},{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}],"name":"mid1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000631","FYPO:0004803","FYPO:0000032","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal actomyosin contractile ring myosin filament organization","termid":"FYPO:0000231"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormally monopolar protein localization to cell tip","termid":"FYPO:0005503"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000138","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein localization to medial cortex during mitotic interphase","termid":"FYPO:0007177"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000032","FYPO:0000631","FYPO:0001985","FYPO:0004803","FYPO:0001320"],"is_obsolete":false,"name":"delayed onset of actomyosin contractile ring assembly","termid":"FYPO:0000729"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"delayed onset of protein localization to cell division site","termid":"FYPO:0003946"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000631","FYPO:0000032","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"multiseptate vegetative cell","termid":"FYPO:0000118"}],"references_by_uniquename":{},"uniquename":"SJAG_01143:allele-1"}


id: SJAG_01143:allele-2
data:
  {"allele_type":"partial_amino_acid_deletion","alleles_by_uniquename":{},"description":"711-723","gene":{"name":"mid1","product":"anillin-related medial ring protein Mid1","uniquename":"SJAG_01143"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mid1-delta(711-723 a.a.)(aa)","display_uniquename":"mid1-delta(711-723_a.a.)-711-723-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"mid1-delta(711-723 a.a.)","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320","FYPO:0000138","FYPO:0001312"],"is_obsolete":false,"name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"}],"references_by_uniquename":{},"uniquename":"SJAG_01143:allele-2"}


id: SJAG_01181:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pek1","product":"MAP kinase kinase Pek1","uniquename":"SJAG_01181"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pek1delta","display_uniquename":"pek1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01181:allele-1","expression":"Null"}]}]}],"name":"pek1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_01181:allele-1"}


id: SJAG_01205:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"crb2","product":"BRCT and tudor domain DNA checkpoint protein Crb2","uniquename":"SJAG_01205"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chk1delta crb2delta","display_uniquename":"chk1delta__crb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01205:allele-1","expression":"Null"}]}]},{"display_name":"crb2delta","display_uniquename":"crb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01205:allele-1","expression":"Null"}]}]}],"name":"crb2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0002683","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002683","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"}],"references_by_uniquename":{},"uniquename":"SJAG_01205:allele-1"}


id: SJAG_01242:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps32","product":"ESCRT III complex subunit Vps32","uniquename":"SJAG_01242"},"genes_by_uniquename":{},"genotypes":[{"display_name":"vps32delta","display_uniquename":"vps32delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01242:allele-1","expression":"Null"}]}]}],"name":"vps32delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000139","FYPO:0002057","FYPO:0000003","FYPO:0001985","FYPO:0002058","FYPO:0002060","FYPO:0005447"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_01242:allele-1"}


id: SJAG_01330:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mad2","product":"mitotic spindle checkpoint protein Mad2","uniquename":"SJAG_01330"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mad2delta","display_uniquename":"mad2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01330:allele-1","expression":"Null"}]}]}],"name":"mad2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000298","FYPO:0000631","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished mitotic spindle assembly checkpoint","termid":"FYPO:0004318"}],"references_by_uniquename":{},"uniquename":"SJAG_01330:allele-1"}


id: SJAG_01355:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"cox6","product":"cytochrome c oxidase subunit VI","uniquename":"SJAG_01355"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cox6delta","display_uniquename":"cox6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01355:allele-1","expression":"Null"}]}]}],"name":"cox6delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000301","FYPO:0000257"],"is_obsolete":false,"name":"normal mating","termid":"FYPO:0000760"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal spore germination","termid":"FYPO:0000579"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal sporulation","termid":"FYPO:0000590"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0000257","FYPO:0002058","FYPO:0000139","FYPO:0002060"],"is_obsolete":false,"name":"normal vegetative cell population growth","termid":"FYPO:0001357"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000139","FYPO:0002057","FYPO:0000003","FYPO:0001985","FYPO:0002058","FYPO:0002060","FYPO:0005447"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_01355:allele-1"}


id: SJAG_01374:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nup132","product":"nucleoporin, WD repeat Nup132","uniquename":"SJAG_01374"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nup132delta","display_uniquename":"nup132delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01374:allele-1","expression":"Null"}]}]}],"name":"nup132delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal nuclear pore localization","termid":"FYPO:0003973"}],"references_by_uniquename":{},"uniquename":"SJAG_01374:allele-1"}


id: SJAG_01410:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad51","product":"RecA family recombinase Rad51/Rhp51","uniquename":"SJAG_01410"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad51delta","display_uniquename":"rad51delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01410:allele-1","expression":"Null"}]}]}],"name":"rad51delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0002683","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"}],"references_by_uniquename":{},"uniquename":"SJAG_01410:allele-1"}


id: SJAG_01458:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"acb1","product":"fatty-acyl-CoA binding protein Acb1","uniquename":"SJAG_01458"},"genes_by_uniquename":{},"genotypes":[{"display_name":"acb1delta","display_uniquename":"acb1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01458:allele-1","expression":"Null"}]}]}],"name":"acb1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000654","FYPO:0000257","FYPO:0000652"],"is_obsolete":false,"name":"normal fatty acid synthase activity","termid":"FYPO:0000719"}],"references_by_uniquename":{},"uniquename":"SJAG_01458:allele-1"}


id: SJAG_01539:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nde1","product":"external mitochondrial NADH dehydrogenase (ubiquinone) Nde1/Nde2","uniquename":"SJAG_01539"},"genes_by_uniquename":{},"genotypes":[],"name":"nde1delta","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_01539:allele-1"}


id: SJAG_01605:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad9","product":"checkpoint clamp complex protein Rad9","uniquename":"SJAG_01605"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad9delta","display_uniquename":"rad9delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01605:allele-1","expression":"Null"}]}]}],"name":"rad9delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0002683","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"}],"references_by_uniquename":{},"uniquename":"SJAG_01605:allele-1"}


id: SJAG_01680:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"chk1","product":"Chk1 protein kinase","uniquename":"SJAG_01680"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chk1delta","display_uniquename":"chk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-1","expression":"Null"}]}]},{"display_name":"chk1delta crb2delta","display_uniquename":"chk1delta__crb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01205:allele-1","expression":"Null"}]}]}],"name":"chk1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0002683","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002683","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"}],"references_by_uniquename":{},"uniquename":"SJAG_01680:allele-1"}


id: SJAG_01680:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"P470L","gene":{"name":"chk1","product":"Chk1 protein kinase","uniquename":"SJAG_01680"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chk1-P470L(aa)","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"chk1-P470L(aa) rad24delta","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}]}],"name":"chk1-P470L","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased invasive hyphal growth","termid":"FYPO:0007774"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"}],"references_by_uniquename":{},"synonyms":[{"name":"chk1- hyperactive (chk1-hyp)","reference":"PMID:23090706","type":"exact"},{"name":"chk1-hyperactive (chk1-hyp)","reference":"PMID:20368354","type":"exact"}],"uniquename":"SJAG_01680:allele-2"}


id: SJAG_01718:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"byr2","product":"MAP kinase kinase kinase Byr2","uniquename":"SJAG_01718"},"genes_by_uniquename":{},"genotypes":[{"display_name":"byr2delta","display_uniquename":"byr2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01718:allele-1","expression":"Null"}]}]}],"name":"byr2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_01718:allele-1"}


id: SJAG_01745:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"lem2","product":"LEM domain nuclear inner membrane protein Heh1/Lem2","uniquename":"SJAG_01745"},"genes_by_uniquename":{},"genotypes":[{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]}],"name":"lem2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0002403","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology during mitosis","termid":"FYPO:0003779"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization","termid":"FYPO:0001375"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"protein mislocalized to endoplasmic reticulum during vegetative growth","termid":"FYPO:0003657"}],"references_by_uniquename":{},"uniquename":"SJAG_01745:allele-1"}


id: SJAG_01753:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mdh1","product":"malate dehydrogenase Mdh1","uniquename":"SJAG_01753"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mdh1delta","display_uniquename":"mdh1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01753:allele-1","expression":"Null"}]}]}],"name":"mdh1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_01753:allele-1"}


id: SJAG_01787:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pck1","product":"protein kinase C (PKC)-like Pck1","uniquename":"SJAG_01787"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pck1delta","display_uniquename":"pck1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]}]},{"display_name":"pck1delta pmk1delta","display_uniquename":"pck1delta__pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]}],"name":"pck1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased hyphal length","termid":"FYPO:0007775"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased mycelial expansion","termid":"FYPO:0007779"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0002274","FYPO:0002494","FYPO:0000002"],"is_obsolete":false,"name":"increased protein phosphorylation during vegetative growth","termid":"FYPO:0001038"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000139","FYPO:0005447","FYPO:0002682","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"resistance to caspofungin","termid":"FYPO:0005152"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0001985","FYPO:0002683","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to tacrolimus and magnesium chloride","termid":"FYPO:0007522"}],"references_by_uniquename":{},"uniquename":"SJAG_01787:allele-1"}


id: SJAG_01794:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"scd2","product":"Cdc42 GTPase complex scaffold subunit Scd2","uniquename":"SJAG_01794"},"genes_by_uniquename":{},"genotypes":[{"display_name":"scd2delta","display_uniquename":"scd2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01794:allele-1","expression":"Null"}]}]}],"name":"scd2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0002057","FYPO:0005447","FYPO:0000003","FYPO:0001985","FYPO:0002058","FYPO:0000139","FYPO:0002060"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000004","FYPO:0001320","FYPO:0000005","FYPO:0000002"],"is_obsolete":false,"name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"references_by_uniquename":{},"uniquename":"SJAG_01794:allele-1"}


id: SJAG_01834:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pom152","product":"nucleoporin, transmembrane ring glycoprotein subunit Pom152","uniquename":"SJAG_01834"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pom152delta","display_uniquename":"pom152delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01834:allele-1","expression":"Null"}]}]}],"name":"pom152delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","termid":"FYPO:0004890"}],"references_by_uniquename":{},"uniquename":"SJAG_01834:allele-1"}


id: SJAG_01906:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nem1","product":"serine/threonine protein phosphatase (Nem1-Spo7 complex) catalytic subunit Nem1","uniquename":"SJAG_01906"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nem1delta","display_uniquename":"nem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01906:allele-1","expression":"Null"}]}]}],"name":"nem1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0005447","FYPO:0002403","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"uniquename":"SJAG_01906:allele-1"}


id: SJAG_01946:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"cem1","product":"3-oxoacyl-[acyl-carrier-protein]-synthase condensing enzyme Cem1","uniquename":"SJAG_01946"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts) cem1delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]},{"display_name":"cem1delta","display_uniquename":"cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]}],"name":"cem1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0002058","FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0002057","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000257","FYPO:0002057","FYPO:0000003","FYPO:0002060","FYPO:0000139","FYPO:0002058"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"}],"references_by_uniquename":{},"uniquename":"SJAG_01946:allele-1"}


id: SJAG_01956:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"E405K ts","gene":{"name":"nuc2","product":"anaphase-promoting complex TPR lobe subcomplex subunit Apc3","uniquename":"SJAG_01956"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"nuc2-1051","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"increased duration of mitotic anaphase","secondary_identifiers":["FYPO:0000617"],"termid":"FYPO:0000618"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0006551","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased protein level during vegetative growth","secondary_identifiers":["FYPO:0000762"],"termid":"FYPO:0001327"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0001985"],"is_obsolete":false,"name":"loss of viability at high temperature","termid":"FYPO:0001387"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"mitotic metaphase/anaphase transition delay","secondary_identifiers":["FYPO:0000393","FYPO:0004309"],"termid":"FYPO:0000324"}],"references_by_uniquename":{},"uniquename":"SJAG_01956:allele-1"}


id: SJAG_02007:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"etr1","product":"enoyl-[acyl-carrier protein] reductase","uniquename":"SJAG_02007"},"genes_by_uniquename":{},"genotypes":[],"name":"etr1delta","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_02007:allele-1"}


id: SJAG_02013:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pyp1","product":"protein tyrosine phosphatase Pyp1","uniquename":"SJAG_02013"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pyp1delta","display_uniquename":"pyp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02013:allele-1","expression":"Null"}]}]}],"name":"pyp1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal branching","termid":"FYPO:0007778"},{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000004","FYPO:0000005"],"is_obsolete":false,"name":"viable small vegetative cell","termid":"FYPO:0000648"}],"references_by_uniquename":{},"uniquename":"SJAG_02013:allele-1"}


id: SJAG_02252:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ace2","product":"DNA-binding transcription factor Ace2","uniquename":"SJAG_02252"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ace2delta","display_uniquename":"ace2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02252:allele-1","expression":"Null"}]}]}],"name":"ace2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished cell separation after cytokinesis","termid":"FYPO:0006557"}],"references_by_uniquename":{},"uniquename":"SJAG_02252:allele-1"}


id: SJAG_02266:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad24","product":"14-3-3 protein Rad24","uniquename":"SJAG_02266"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chk1-P470L(aa) rad24delta","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}]},{"display_name":"rad24delta","display_uniquename":"rad24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}]}],"name":"rad24delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"}],"references_by_uniquename":{},"uniquename":"SJAG_02266:allele-1"}


id: SJAG_02342:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wis1","product":"MAP kinase kinase Wis1","uniquename":"SJAG_02342"},"genes_by_uniquename":{},"genotypes":[{"display_name":"wis1delta","display_uniquename":"wis1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02342:allele-1","expression":"Null"}]}]}],"name":"wis1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02342:allele-1"}


id: SJAG_02379:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"gap1","product":"RasGAP Gap1","uniquename":"SJAG_02379"},"genes_by_uniquename":{},"genotypes":[{"display_name":"gap1delta","display_uniquename":"gap1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02379:allele-1","expression":"Null"}]}]}],"name":"gap1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02379:allele-1"}


id: SJAG_02392:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pom1","product":"DYRK family cell polarity protein kinase Pom1","uniquename":"SJAG_02392"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}],"name":"pom1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":3,"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal protein localization to medial cortex during vegetative growth","termid":"FYPO:0000731"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormally monopolar protein localization to cell tip","termid":"FYPO:0005503"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000138","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein localization to medial cortex during mitotic interphase","termid":"FYPO:0007177"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000032","FYPO:0000631","FYPO:0000002","FYPO:0004803","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"actomyosin contractile ring displaced from midpoint","termid":"FYPO:0002026"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"decreased bipolar index","termid":"FYPO:0003535"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000032","FYPO:0000631","FYPO:0001985","FYPO:0004803","FYPO:0001320"],"is_obsolete":false,"name":"delayed onset of actomyosin contractile ring assembly","termid":"FYPO:0000729"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"mislocalized hyphal septum","termid":"FYPO:0007801"}],"references_by_uniquename":{},"uniquename":"SJAG_02392:allele-1"}


id: SJAG_02409:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"stc1","product":"CLRC complex-Argonaute linker protein Stc1","uniquename":"SJAG_02409"},"genes_by_uniquename":{},"genotypes":[{"display_name":"stc1delta","display_uniquename":"stc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02409:allele-1","expression":"Null"}]}]}],"name":"stc1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_02409:allele-1"}


id: SJAG_02486:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ste6","product":"RasGEF Ste6","uniquename":"SJAG_02486"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ste6delta","display_uniquename":"ste6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02486:allele-1","expression":"Null"}]}]}],"name":"ste6delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02486:allele-1"}


id: SJAG_02527:allele-1
data:
  {"allele_type":"disruption","alleles_by_uniquename":{},"description":"RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage","gene":{"name":"lig4","product":"DNA repair ligase Lig4","uniquename":"SJAG_02527"},"genes_by_uniquename":{},"genotypes":[{"display_name":"lig4::KanMX6(RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage)[Knockdown]","display_uniquename":"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02527:allele-1","expression":"Knockdown"}]}]}],"name":"lig4::KanMX6","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased flocculation during vegetative growth","termid":"FYPO:0009111"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"increased sporulation frequency","termid":"FYPO:0000588"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0001985"],"is_obsolete":false,"name":"loss of viability following cellular response to UV","termid":"FYPO:0005705"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002057","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"loss of viability in stationary phase upon glucose starvation","termid":"FYPO:0005231"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0005447","FYPO:0002683","FYPO:0000003","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to caffeine during vegetative growth","termid":"FYPO:0000097"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002058","FYPO:0002060","FYPO:0000139","FYPO:0002057","FYPO:0000003","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to heat shock","termid":"FYPO:0001408"}],"references_by_uniquename":{},"uniquename":"SJAG_02527:allele-1"}


id: SJAG_02576:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad25","product":"14-3-3 protein Rad25","uniquename":"SJAG_02576"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad25delta","display_uniquename":"rad25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02576:allele-1","expression":"Null"}]}]}],"name":"rad25delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"}],"references_by_uniquename":{},"uniquename":"SJAG_02576:allele-1"}


id: SJAG_02592:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"sty1","product":"MAP kinase Sty1","uniquename":"SJAG_02592"},"genes_by_uniquename":{},"genotypes":[{"display_name":"SJAG_00124delta sty1delta","display_uniquename":"SJAG_00124delta__sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00124:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]},{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}],"name":"sty1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0000002","FYPO:0001985","FYPO:0000032","FYPO:0004803","FYPO:0001320"],"is_obsolete":false,"name":"abolished actomyosin contractile ring assembly, clumped medial cortical nodes","termid":"FYPO:0002998"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0000003","FYPO:0002060","FYPO:0005447","FYPO:0002058","FYPO:0002057"],"is_obsolete":false,"name":"abolished cell population growth at high temperature","termid":"FYPO:0004481"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased quorum sensing response","termid":"FYPO:0007824"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"elongated vegetative cell","termid":"FYPO:0001122"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased hyphal branching","termid":"FYPO:0007777"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased hyphal length","termid":"FYPO:0007775"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased invasive hyphal growth","termid":"FYPO:0007774"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased mycelial expansion","termid":"FYPO:0007779"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002494","FYPO:0005447","FYPO:0002274","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased protein phosphorylation","termid":"FYPO:0002680"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0005447","FYPO:0002683","FYPO:0000003","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to caffeine during vegetative growth","termid":"FYPO:0000097"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0005447","FYPO:0000139","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to latrunculin A","termid":"FYPO:0000107"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000139","FYPO:0005447","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to oxidative stress","termid":"FYPO:0000726"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to salt stress","termid":"FYPO:0000271"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02592:allele-1"}


id: SJAG_02594:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"arb1","product":"argonaute inhibitor protein 1","uniquename":"SJAG_02594"},"genes_by_uniquename":{},"genotypes":[{"display_name":"arb1delta","display_uniquename":"arb1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02594:allele-1","expression":"Null"}]}]}],"name":"arb1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_02594:allele-1"}


id: SJAG_02621:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ago1","product":"argonaute","uniquename":"SJAG_02621"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ago1delta","display_uniquename":"ago1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]}]},{"display_name":"ago1delta leo1delta","display_uniquename":"ago1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]}],"name":"ago1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0006551","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased centromeric transcript level","termid":"FYPO:0004982"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"increased telomeric transcript level","termid":"FYPO:0004573"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal histone H3-K9 dimethylation at transposable element during vegetative growth","termid":"FYPO:0006989"},{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_02621:allele-1"}


id: SJAG_02668:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"R77W","gene":{"name":"mpe1","product":"mRNA cleavage ubiquitin-protein ligase E3 Mpe1","uniquename":"SJAG_02668"},"genes_by_uniquename":{},"genotypes":[{"display_name":"dcr1delta mpe1-R77W(aa)","display_uniquename":"dcr1delta__mpe1-R77W-R77W-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02668:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"mpe1-R77W","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_02668:allele-1"}


id: SJAG_02695:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"tip1","product":"CLIP170 family protein Tip1","uniquename":"SJAG_02695"},"genes_by_uniquename":{},"genotypes":[{"display_name":"tip1delta","display_uniquename":"tip1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02695:allele-1","expression":"Null"}]}]}],"name":"tip1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"mislocalized septum","termid":"FYPO:0004293"}],"references_by_uniquename":{},"uniquename":"SJAG_02695:allele-1"}


id: SJAG_02763:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1delta","display_uniquename":"ned1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-1","expression":"Null"}]}]}],"name":"ned1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0005447","FYPO:0002403","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000139","FYPO:0002057","FYPO:0000003","FYPO:0001985","FYPO:0002058","FYPO:0002060","FYPO:0005447"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_02763:allele-1"}


id: SJAG_02763:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"D422E,D424E","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1cat(D422E,D424E aa)","display_uniquename":"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"ned1cat","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0005447","FYPO:0002403","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"synonyms":[{"name":"Catalytic mutant","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-2"}


id: SJAG_02763:allele-3
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"S235A; S651","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1S235A/S651(S235A; S651 aa)","display_uniquename":"ned1S235A_S651-S235A__S651-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"ned1S235A/S651","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased lipid droplet formation","termid":"FYPO:0006945"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal nuclear envelope morphology","termid":"FYPO:0003751"}],"references_by_uniquename":{},"synonyms":[{"name":"refractory to phosphorylation","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-3"}


id: SJAG_02763:allele-4
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"S235E; S651E","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1S235E/S651E(S235E; S651E aa)","display_uniquename":"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-4","expression":"Not assayed or wild type"}]}]}],"name":"ned1S235E/S651E","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased lipid droplet formation","termid":"FYPO:0006054"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0005447","FYPO:0002403","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"}


id: SJAG_02763:allele-5
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"S499E; S538E; T620E; T638E; S651E","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1-5E(S499E; S538E; T620E; T638E; S651E aa)","display_uniquename":"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-5","expression":"Not assayed or wild type"}]}]}],"name":"ned1-5E","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased lipid droplet formation","termid":"FYPO:0006054"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0005447","FYPO:0002403","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"uniquename":"SJAG_02763:allele-5"}


id: SJAG_02763:allele-6
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"S499A; S538A; T620A; T638A; S651A","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1-5A(S499A; S538A; T620A; T638A; S651A aa)","display_uniquename":"ned1-5A-S499A__S538A__T620A__T638A__S651A-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-6","expression":"Not assayed or wild type"}]}]}],"name":"ned1-5A","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased lipid droplet formation","termid":"FYPO:0006945"}],"references_by_uniquename":{},"synonyms":[{"name":"refractory to potential proline-directed kinase phosphorylation","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-6"}


id: SJAG_02771:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad1","product":"checkpoint clamp complex protein Rad1","uniquename":"SJAG_02771"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad1delta","display_uniquename":"rad1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02771:allele-1","expression":"Null"}]}]}],"name":"rad1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"}],"references_by_uniquename":{},"uniquename":"SJAG_02771:allele-1"}


id: SJAG_02796:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"A343T","gene":{"name":"pyk1","product":"pyruvate kinase","uniquename":"SJAG_02796"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pyk1-A343T(aa)","display_uniquename":"pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02796:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"pyk1-A343T","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000661","FYPO:0000654","FYPO:0000707","FYPO:0005447","FYPO:0000652","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal pyruvate kinase activity","termid":"FYPO:0007363"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal glucose consumption","termid":"FYPO:0004165"}],"references_by_uniquename":{},"uniquename":"SJAG_02796:allele-1"}


id: SJAG_02819:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"efc25","product":"Ras1 GEF Efc25","uniquename":"SJAG_02819"},"genes_by_uniquename":{},"genotypes":[{"display_name":"efc25delta","display_uniquename":"efc25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02819:allele-1","expression":"Null"}]}]}],"name":"efc25delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"decreased sporulation frequency","termid":"FYPO:0000584"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000004","FYPO:0001320","FYPO:0000005","FYPO:0000002"],"is_obsolete":false,"name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"references_by_uniquename":{},"uniquename":"SJAG_02819:allele-1"}


id: SJAG_02860:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wcs1","product":"blue light photoreceptor Wcs1","uniquename":"SJAG_02860"},"genes_by_uniquename":{},"genotypes":[{"display_name":"wcs1delta","display_uniquename":"wcs1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02860:allele-1","expression":"Null"}]}]}],"name":"wcs1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000298","FYPO:0000002"],"is_obsolete":false,"name":"abnormal blue light response","termid":"FYPO:0008031"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003"],"is_obsolete":false,"name":"decreased sexual agglutination in response to blue light","termid":"FYPO:0008046"}],"references_by_uniquename":{},"uniquename":"SJAG_02860:allele-1"}


id: SJAG_02923:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"spk1","product":"MAP kinase Spk1","uniquename":"SJAG_02923"},"genes_by_uniquename":{},"genotypes":[{"display_name":"spk1delta","display_uniquename":"spk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02923:allele-1","expression":"Null"}]}]}],"name":"spk1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":25,"genotype_count":31,"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"abnormal hyphal growth","termid":"FYPO:0007773"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02923:allele-1"}


id: SJAG_03048:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"G146D","gene":{"name":"cdc2","product":"cyclin-dependent protein kinase Cdk1/Cdc2","uniquename":"SJAG_03048"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cdc2-1w(G146D aa)","display_uniquename":"cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03048:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"cdc2-1w","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000004","FYPO:0000005"],"is_obsolete":false,"name":"viable small vegetative cell","termid":"FYPO:0000648"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000004","FYPO:0000002","FYPO:0001320","FYPO:0000005"],"is_obsolete":false,"name":"viable thin vegetative cell","termid":"FYPO:0001877"}],"references_by_uniquename":{},"uniquename":"SJAG_03048:allele-1"}


id: SJAG_03118:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"leo1","product":"RNA polymerase II associated Paf1 complex subunit Leo1","uniquename":"SJAG_03118"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ago1delta leo1delta","display_uniquename":"ago1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},{"display_name":"clr4delta leo1delta","display_uniquename":"clr4delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04574:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},{"display_name":"dcr1delta leo1delta","display_uniquename":"dcr1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]}],"name":"leo1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0006551","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased centromeric transcript level","termid":"FYPO:0004982"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"increased telomeric transcript level","termid":"FYPO:0004573"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal histone H3-K9 dimethylation at transposable element during vegetative growth","termid":"FYPO:0006989"},{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_03118:allele-1"}


id: SJAG_03118:allele-2
data:
  {"allele_type":"nonsense_mutation","alleles_by_uniquename":{},"description":"aa61->stop","gene":{"name":"leo1","product":"RNA polymerase II associated Paf1 complex subunit Leo1","uniquename":"SJAG_03118"},"genes_by_uniquename":{},"genotypes":[{"display_name":"dcr1delta frameshift(aa61->stop)","display_uniquename":"dcr1delta__frameshift-aa61->stop-nonsense_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"frameshift","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_03118:allele-2"}


id: SJAG_03143:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"sep1","product":"DNA-binding forkhead transcription factor Sep1","uniquename":"SJAG_03143"},"genes_by_uniquename":{},"genotypes":[{"display_name":"sep1delta","display_uniquename":"sep1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03143:allele-1","expression":"Null"}]}]}],"name":"sep1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished cell separation after cytokinesis","termid":"FYPO:0006557"}],"references_by_uniquename":{},"uniquename":"SJAG_03143:allele-1"}


id: SJAG_03164:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ura4","product":"orotidine 5'-phosphate decarboxylase Ura4","uniquename":"SJAG_03164"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ura4delta","display_uniquename":"ura4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03164:allele-1","expression":"Null"}]}]}],"name":"ura4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"growth auxotrophic for uracil","termid":"FYPO:0001012"}],"references_by_uniquename":{},"uniquename":"SJAG_03164:allele-1"}


id: SJAG_03198:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"oar2","product":"3-oxoacyl-[acyl-carrier-protein] reductase Oar2","uniquename":"SJAG_03198"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts) oar2delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]},{"display_name":"oar2delta","display_uniquename":"oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]}],"name":"oar2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0002058","FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0002057","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000257","FYPO:0002057","FYPO:0000003","FYPO:0002060","FYPO:0000139","FYPO:0002058"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"}],"references_by_uniquename":{},"uniquename":"SJAG_03198:allele-1"}


id: SJAG_03198:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"Y189D cold sensitive","gene":{"name":"oar2","product":"3-oxoacyl-[acyl-carrier-protein] reductase Oar2","uniquename":"SJAG_03198"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts) oar2-51(Y189D cold sensitive)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"oar2-51(Y189D cold sensitive)[Overexpression]","display_uniquename":"oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Overexpression"}]}]}],"name":"oar2-51","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0002058","FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0002057","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000257","FYPO:0002057","FYPO:0000003","FYPO:0002060","FYPO:0000139","FYPO:0002058"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"}],"references_by_uniquename":{},"uniquename":"SJAG_03198:allele-2"}


id: SJAG_03198:allele-3
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"R72A,L75A,R106A,L109A","gene":{"name":"oar2","product":"3-oxoacyl-[acyl-carrier-protein] reductase Oar2","uniquename":"SJAG_03198"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts) oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]},{"display_name":"oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]}],"name":"oar2-dm12","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0002058","FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0002057","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000257","FYPO:0002057","FYPO:0000003","FYPO:0002060","FYPO:0000139","FYPO:0002058"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"}],"references_by_uniquename":{},"synonyms":[{"name":"destruction box mutations","reference":"PMID:23786411","type":"exact"}],"uniquename":"SJAG_03198:allele-3"}


id: SJAG_03250:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"sst4","product":"sorting receptor for ubiquitinated membrane proteins, ESCRT 0 complex subunit Sst4","uniquename":"SJAG_03250"},"genes_by_uniquename":{},"genotypes":[{"display_name":"sst4delta","display_uniquename":"sst4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03250:allele-1","expression":"Null"}]}]}],"name":"sst4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal protein complex localization","termid":"FYPO:0001440"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal nuclear envelope morphology during mitosis","termid":"FYPO:0003780"}],"references_by_uniquename":{},"uniquename":"SJAG_03250:allele-1"}


id: SJAG_03351:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"A186T ts","gene":{"name":"cut23","product":"anaphase-promoting complex TPR lobe subcomplex subunit Apc8","uniquename":"SJAG_03351"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"cut23-415","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"increased duration of mitotic anaphase","secondary_identifiers":["FYPO:0000617"],"termid":"FYPO:0000618"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0006551","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased protein level during vegetative growth","secondary_identifiers":["FYPO:0000762"],"termid":"FYPO:0001327"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0001985"],"is_obsolete":false,"name":"loss of viability at high temperature","termid":"FYPO:0001387"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"mitotic metaphase/anaphase transition delay","secondary_identifiers":["FYPO:0000393","FYPO:0004309"],"termid":"FYPO:0000324"}],"references_by_uniquename":{},"uniquename":"SJAG_03351:allele-1"}


id: SJAG_03356:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rdp1","product":"RNA-directed RNA polymerase (RDRC) Rdp1","uniquename":"SJAG_03356"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rdp1delta","display_uniquename":"rdp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03356:allele-1","expression":"Null"}]}]}],"name":"rdp1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_03356:allele-1"}


id: SJAG_03384:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wis4","product":"MAP kinase kinase kinase Wis4","uniquename":"SJAG_03384"},"genes_by_uniquename":{},"genotypes":[{"display_name":"wis4delta","display_uniquename":"wis4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03384:allele-1","expression":"Null"}]}]}],"name":"wis4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_03384:allele-1"}


id: SJAG_03444:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"agn1","product":"cell wall glucan endo-1,3-alpha-glucosidase Agn1","uniquename":"SJAG_03444"},"genes_by_uniquename":{},"genotypes":[{"display_name":"agn1delta","display_uniquename":"agn1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03444:allele-1","expression":"Null"}]}]}],"name":"agn1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal cell separation after cytokinesis resulting in chained cells","termid":"FYPO:0001971"}],"references_by_uniquename":{},"uniquename":"SJAG_03444:allele-1"}


id: SJAG_03449:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"man1","product":"LEM domain nuclear inner membrane protein Man1, Sad1 interacting factor","uniquename":"SJAG_03449"},"genes_by_uniquename":{},"genotypes":[{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]}],"name":"man1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0002403","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology during mitosis","termid":"FYPO:0003779"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0000337","FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001985","FYPO:0000641"],"is_obsolete":false,"name":"abnormal rDNA separation","termid":"FYPO:0000671"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","termid":"FYPO:0004890"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000139","FYPO:0002057","FYPO:0000003","FYPO:0001985","FYPO:0002058","FYPO:0002060","FYPO:0005447"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"unequal nucleolus inheritance","termid":"FYPO:0004683"}],"references_by_uniquename":{},"uniquename":"SJAG_03449:allele-1"}


id: SJAG_03449:allele-2
data:
  {"allele_type":"partial_amino_acid_deletion","alleles_by_uniquename":{},"description":"man1DHEH","gene":{"name":"man1","product":"LEM domain nuclear inner membrane protein Man1, Sad1 interacting factor","uniquename":"SJAG_03449"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Man1DHEH(man1DHEH)","display_uniquename":"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"Man1DHEH","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0002403","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology during mitosis","termid":"FYPO:0003779"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0000337","FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001985","FYPO:0000641"],"is_obsolete":false,"name":"abnormal rDNA separation","termid":"FYPO:0000671"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","termid":"FYPO:0004890"}],"references_by_uniquename":{},"uniquename":"SJAG_03449:allele-2"}


id: SJAG_03449:allele-3
data:
  {"allele_type":"amino_acid_insertion_and_deletion","alleles_by_uniquename":{},"description":"man1-1-488","gene":{"name":"man1","product":"LEM domain nuclear inner membrane protein Man1, Sad1 interacting factor","uniquename":"SJAG_03449"},"genes_by_uniquename":{},"genotypes":[{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"man1-1-488","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0002403","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology during mitosis","termid":"FYPO:0003779"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0000337","FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001985","FYPO:0000641"],"is_obsolete":false,"name":"abnormal rDNA separation","termid":"FYPO:0000671"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","termid":"FYPO:0004890"}],"references_by_uniquename":{},"uniquename":"SJAG_03449:allele-3"}


id: SJAG_03453:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ras1","product":"GTPase Ras1","uniquename":"SJAG_03453"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ras1delta","display_uniquename":"ras1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03453:allele-1","expression":"Null"}]}]}],"name":"ras1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0002057","FYPO:0005447","FYPO:0000003","FYPO:0001985","FYPO:0002058","FYPO:0000139","FYPO:0002060"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000004","FYPO:0001320","FYPO:0000005","FYPO:0000002"],"is_obsolete":false,"name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"references_by_uniquename":{},"uniquename":"SJAG_03453:allele-1"}


id: SJAG_03575:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"E548K ts","gene":{"name":"apc2","product":"anaphase-promoting complex cullin family subunit Apc2","uniquename":"SJAG_03575"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"apc2-361(E548K ts) cem1delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]},{"display_name":"apc2-361(E548K ts) oar2-51(Y189D cold sensitive)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"apc2-361(E548K ts) oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]},{"display_name":"apc2-361(E548K ts) oar2delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]}],"name":"apc2-361","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"increased duration of mitotic anaphase","secondary_identifiers":["FYPO:0000617"],"termid":"FYPO:0000618"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0006551","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased protein level during vegetative growth","secondary_identifiers":["FYPO:0000762"],"termid":"FYPO:0001327"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0001985"],"is_obsolete":false,"name":"loss of viability at high temperature","termid":"FYPO:0001387"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"mitotic metaphase/anaphase transition delay","secondary_identifiers":["FYPO:0000393","FYPO:0004309"],"termid":"FYPO:0000324"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000257","FYPO:0002057","FYPO:0000003","FYPO:0002060","FYPO:0000139","FYPO:0002058"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"unequal nucleolus inheritance","termid":"FYPO:0004683"}],"references_by_uniquename":{},"uniquename":"SJAG_03575:allele-1"}


id: SJAG_03581:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"gef1","product":"RhoGEF for Cdc42 (Gef1)","uniquename":"SJAG_03581"},"genes_by_uniquename":{},"genotypes":[{"display_name":"gef1delta","display_uniquename":"gef1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03581:allele-1","expression":"Null"}]}]}],"name":"gef1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000004","FYPO:0000002","FYPO:0001320","FYPO:0000005"],"is_obsolete":false,"name":"viable thin vegetative cell","termid":"FYPO:0001877"}],"references_by_uniquename":{},"uniquename":"SJAG_03581:allele-1"}


id: SJAG_03596:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"L264P,P442T","gene":{"name":"cdc15","product":"F-BAR domain protein Cdc15","uniquename":"SJAG_03596"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cdc15-A(L264P,P442T aa)","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"cdc15-A(L264P,P442T aa) mid1delta","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type__mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]}],"name":"cdc15-A","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000631","FYPO:0004803","FYPO:0000032","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal actomyosin contractile ring myosin filament organization","termid":"FYPO:0000231"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"delayed onset of protein localization to cell division site","termid":"FYPO:0003946"}],"references_by_uniquename":{},"uniquename":"SJAG_03596:allele-1"}


id: SJAG_03689:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"dcr1","product":"dicer","uniquename":"SJAG_03689"},"genes_by_uniquename":{},"genotypes":[{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]},{"display_name":"dcr1delta frameshift(aa61->stop)","display_uniquename":"dcr1delta__frameshift-aa61->stop-nonsense_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"dcr1delta leo1delta","display_uniquename":"dcr1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},{"display_name":"dcr1delta mpe1-R77W(aa)","display_uniquename":"dcr1delta__mpe1-R77W-R77W-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02668:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"dcr1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0006551","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased siRNA level","termid":"FYPO:0004205"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0006551","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased centromeric transcript level","termid":"FYPO:0004982"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased rate of transposition","termid":"FYPO:0000595"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased subtelomere-derived RNA level","termid":"FYPO:0004574"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"increased telomeric transcript level","termid":"FYPO:0004573"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal histone H3-K9 dimethylation at transposable element during vegetative growth","termid":"FYPO:0006989"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal transposition","termid":"FYPO:0000596"},{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_03689:allele-1"}


id: SJAG_03720:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"tel1","product":"ATM checkpoint kinase","uniquename":"SJAG_03720"},"genes_by_uniquename":{},"genotypes":[{"display_name":"tel1delta","display_uniquename":"tel1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03720:allele-1","expression":"Null"}]}]}],"name":"tel1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased invasive hyphal growth","termid":"FYPO:0007774"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0002060","FYPO:0002057","FYPO:0000257","FYPO:0002058"],"is_obsolete":false,"name":"normal growth on camptothecin","termid":"FYPO:0001690"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0000257","FYPO:0002057"],"is_obsolete":false,"name":"normal viability following cellular response to hydroxyurea","termid":"FYPO:0004693"}],"references_by_uniquename":{},"uniquename":"SJAG_03720:allele-1"}


id: SJAG_03753:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mkh1","product":"MEK kinase (MEKK) Mkh1","uniquename":"SJAG_03753"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mkh1delta","display_uniquename":"mkh1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03753:allele-1","expression":"Null"}]}]}],"name":"mkh1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_03753:allele-1"}


id: SJAG_03783:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps24","product":"ESCRT III complex subunit Vps24","uniquename":"SJAG_03783"},"genes_by_uniquename":{},"genotypes":[{"display_name":"vps24delta","display_uniquename":"vps24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03783:allele-1","expression":"Null"}]}]}],"name":"vps24delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":18,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein localization","termid":"FYPO:0001370"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"}],"references_by_uniquename":{},"uniquename":"SJAG_03783:allele-1"}


id: SJAG_03891:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"alx1","product":"ESCRT-III regulator Alx1","uniquename":"SJAG_03891"},"genes_by_uniquename":{},"genotypes":[{"display_name":"alx1delta","display_uniquename":"alx1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03891:allele-1","expression":"Null"}]}]}],"name":"alx1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"}],"references_by_uniquename":{},"uniquename":"SJAG_03891:allele-1"}


id: SJAG_03891:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"E308V","gene":{"name":"alx1","product":"ESCRT-III regulator Alx1","uniquename":"SJAG_03891"},"genes_by_uniquename":{},"genotypes":[],"name":"rim20E308V","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_03891:allele-2"}


id: SJAG_03892:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps4","product":"AAA family ATPase Vps4","uniquename":"SJAG_03892"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nur1delta vps4delta","display_uniquename":"nur1delta__vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]},{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}],"name":"vps4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal protein localization to heterochromatin","termid":"FYPO:0004718"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to heterochromatin during vegetative growth","termid":"FYPO:0001132"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased telomere tethering at nuclear periphery during mitosis","termid":"FYPO:0007770"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000139","FYPO:0002057","FYPO:0000003","FYPO:0001985","FYPO:0002058","FYPO:0002060","FYPO:0005447"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_03892:allele-1"}


id: SJAG_03892:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"E233Q","gene":{"name":"vps4","product":"AAA family ATPase Vps4","uniquename":"SJAG_03892"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Vps4-EQ(E233Q aa)","display_uniquename":"Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"Vps4-EQ","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"}],"references_by_uniquename":{},"uniquename":"SJAG_03892:allele-2"}


id: SJAG_03892:allele-3
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"I307T L327S","gene":{"name":"vps4","product":"AAA family ATPase Vps4","uniquename":"SJAG_03892"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cmp7delta vps4-ts(I307T L327S aa)","display_uniquename":"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]},{"display_name":"vps4-ts(I307T L327S aa)","display_uniquename":"vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"vps4-ts","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"}],"references_by_uniquename":{},"uniquename":"SJAG_03892:allele-3"}


id: SJAG_03916:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"chp1","product":"heterochromatin (HP1) family chromodomain protein Chp1","uniquename":"SJAG_03916"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chp1delta","display_uniquename":"chp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03916:allele-1","expression":"Null"}]}]}],"name":"chp1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_03916:allele-1"}


id: SJAG_03920:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"sdh3","product":"succinate dehydrogenase (ubiquinone) cytochrome b subunit","uniquename":"SJAG_03920"},"genes_by_uniquename":{},"genotypes":[{"display_name":"sdh3delta","display_uniquename":"sdh3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03920:allele-1","expression":"Null"}]}]}],"name":"sdh3delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_03920:allele-1"}


id: SJAG_03940:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nem2","product":"serine/threonine protein phosphatase (Nem1-Spo7 complex) regulatory subunit","uniquename":"SJAG_03940"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nem2delta","display_uniquename":"nem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03940:allele-1","expression":"Null"}]}]}],"name":"nem2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002274","FYPO:0005447","FYPO:0001985","FYPO:0002494","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein dephosphorylation during vegetative growth","termid":"FYPO:0005957"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0005447","FYPO:0002403","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"uniquename":"SJAG_03940:allele-1"}


id: SJAG_04009:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ste11","product":"DNA-binding transcription factor Ste11","uniquename":"SJAG_04009"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ste11delta","display_uniquename":"ste11delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04009:allele-1","expression":"Null"}]}]}],"name":"ste11delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_04009:allele-1"}


id: SJAG_04061:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"arb2","product":"argonaute binding protein 2","uniquename":"SJAG_04061"},"genes_by_uniquename":{},"genotypes":[{"display_name":"arb2delta","display_uniquename":"arb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04061:allele-1","expression":"Null"}]}]}],"name":"arb2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_04061:allele-1"}


id: SJAG_04152:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ndi1","product":"internal mitochondrial NADH dehydrogenase (ubiquinone) Ndi1","uniquename":"SJAG_04152"},"genes_by_uniquename":{},"genotypes":[],"name":"ndi1delta","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_04152:allele-1"}


id: SJAG_04280:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"T582G","gene":{"name":"wee1","product":"M phase inhibitor protein kinase Wee1","uniquename":"SJAG_04280"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"rga6delta wee1-as8(T582G aa)","display_uniquename":"rga6delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"wee1-as8(T582G aa)","display_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"wee1-as8","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005568","FYPO:0004803","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal establishment or maintenance of actin cytoskeleton polarity during vegetative growth","termid":"FYPO:0000198"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormally monopolar protein localization to cell tip","termid":"FYPO:0005503"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abolished geometry scaling","termid":"FYPO:0007783"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"increased protein localization to non-growing cell tip","termid":"FYPO:0002870"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000631","FYPO:0000138","FYPO:0000032","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0004803","FYPO:0001320"],"is_obsolete":false,"name":"mislocalized actomyosin contractile ring","termid":"FYPO:0001369"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000004","FYPO:0000005"],"is_obsolete":false,"name":"viable small vegetative cell","termid":"FYPO:0000648"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000004","FYPO:0000002","FYPO:0001320","FYPO:0000005"],"is_obsolete":false,"name":"viable thin vegetative cell","termid":"FYPO:0001877"}],"references_by_uniquename":{},"uniquename":"SJAG_04280:allele-1"}


id: SJAG_04280:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"G788E","gene":{"name":"wee1","product":"M phase inhibitor protein kinase Wee1","uniquename":"SJAG_04280"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rga4delta wee1-G788E(aa)","display_uniquename":"rga4delta__wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"wee1-G788E(aa)","display_uniquename":"wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"wee1-G788E","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"mislocalized septum","termid":"FYPO:0004293"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000004","FYPO:0000005"],"is_obsolete":false,"name":"viable small vegetative cell","termid":"FYPO:0000648"}],"references_by_uniquename":{},"uniquename":"SJAG_04280:allele-2"}


id: SJAG_04280:allele-3
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wee1","product":"M phase inhibitor protein kinase Wee1","uniquename":"SJAG_04280"},"genes_by_uniquename":{},"genotypes":[],"name":"wee1delta","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_04280:allele-3"}


id: SJAG_04284:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nup61","product":"nucleoporin Nup61","uniquename":"SJAG_04284"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nup61delta","display_uniquename":"nup61delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04284:allele-1","expression":"Null"}]}]}],"name":"nup61delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal cell cycle arrest in mitotic anaphase","termid":"FYPO:0000619"},{"cv_name":"fission_yeast_phenotype","gene_count":11,"genotype_count":16,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal nuclear envelope organization","termid":"FYPO:0000815"}],"references_by_uniquename":{},"uniquename":"SJAG_04284:allele-1"}


id: SJAG_04287:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"cds1","product":"DNA replication checkpoint kinase Cds1","uniquename":"SJAG_04287"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cds1delta","display_uniquename":"cds1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04287:allele-1","expression":"Null"}]}]}],"name":"cds1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002683","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"}],"references_by_uniquename":{},"uniquename":"SJAG_04287:allele-1"}


id: SJAG_04312:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pka1","product":"cAMP-dependent protein kinase catalytic subunit Pka1","uniquename":"SJAG_04312"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pka1delta","display_uniquename":"pka1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04312:allele-1","expression":"Null"}]}]}],"name":"pka1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":25,"genotype_count":31,"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"abnormal hyphal growth","termid":"FYPO:0007773"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"elongated vegetative cell","termid":"FYPO:0001122"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"loss of viability in stationary phase","termid":"FYPO:0000245"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0005447","FYPO:0002683","FYPO:0000003","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to caffeine during vegetative growth","termid":"FYPO:0000097"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002683","FYPO:0001985","FYPO:0000139","FYPO:0000003","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to hydrogen peroxide","termid":"FYPO:0000087"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0002683","FYPO:0005447","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to potassium chloride","termid":"FYPO:0001214"}],"references_by_uniquename":{},"uniquename":"SJAG_04312:allele-1"}


id: SJAG_04332:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"I30T,T572P","gene":{"name":"cdc25","product":"protein tyrosine phosphatase (M phase inducer) Cdc25","uniquename":"SJAG_04332"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cdc25-D9(I30T,T572P aa)","display_uniquename":"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04332:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"cdc25-D9","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000631","FYPO:0000005","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"inviable elongated mononucleate cell with cell cycle arrest at mitotic G2/M phase transition","termid":"FYPO:0007701"}],"references_by_uniquename":{},"uniquename":"SJAG_04332:allele-1"}


id: SJAG_04349:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps28","product":"ESCRT I complex subunit Vps28","uniquename":"SJAG_04349"},"genes_by_uniquename":{},"genotypes":[{"display_name":"vps28delta","display_uniquename":"vps28delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04349:allele-1","expression":"Null"}]}]}],"name":"vps28delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal protein complex localization","termid":"FYPO:0001440"}],"references_by_uniquename":{},"uniquename":"SJAG_04349:allele-1"}


id: SJAG_04464:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"R152C","gene":{"name":"pim1","product":"RCC1 family Ran GEF","uniquename":"SJAG_04464"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"pim1-R152C","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal cell cycle arrest in mitotic anaphase","termid":"FYPO:0000619"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"abnormal mitotic cell cycle arrest with condensed chromosomes","termid":"FYPO:0003738"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0002058","FYPO:0002060","FYPO:0000139","FYPO:0002057","FYPO:0001985"],"is_obsolete":false,"name":"decreased cell population growth at high temperature","secondary_identifiers":["FYPO:0000247"],"termid":"FYPO:0000082"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000004","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"inviable vegetative cell","termid":"FYPO:0001489"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002403","FYPO:0005447","FYPO:0000004","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"inviable vegetative cell with fragmented nuclear envelope during mitotic telophase","termid":"FYPO:0003976"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0001985"],"is_obsolete":false,"name":"loss of viability at high temperature","termid":"FYPO:0001387"}],"references_by_uniquename":{},"synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}


id: SJAG_04489:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"did4","product":"ESCRT III complex subunit Did4","uniquename":"SJAG_04489"},"genes_by_uniquename":{},"genotypes":[{"display_name":"did4delta","display_uniquename":"did4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04489:allele-1","expression":"Null"}]}]}],"name":"did4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":18,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein localization","termid":"FYPO:0001370"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"}],"references_by_uniquename":{},"uniquename":"SJAG_04489:allele-1"}


id: SJAG_04522:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rga4","product":"RhoGAP Rga4","uniquename":"SJAG_04522"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rga4delta","display_uniquename":"rga4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]}]},{"display_name":"rga4delta rga6delta","display_uniquename":"rga4delta__rga6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]}]},{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"rga4delta wee1-G788E(aa)","display_uniquename":"rga4delta__wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"rga4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abolished geometry scaling","termid":"FYPO:0007783"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abolished polar cell growth","termid":"FYPO:0004105"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000631","FYPO:0000138","FYPO:0000032","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0004803","FYPO:0001320"],"is_obsolete":false,"name":"mislocalized actomyosin contractile ring","termid":"FYPO:0001369"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"mislocalized septum","termid":"FYPO:0004293"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000004","FYPO:0001320","FYPO:0000002","FYPO:0000005"],"is_obsolete":false,"name":"viable vegetative cell with increased cell diameter","termid":"FYPO:0006616"}],"references_by_uniquename":{},"uniquename":"SJAG_04522:allele-1"}


id: SJAG_04551:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pmk1","product":"MAP kinase Pmk1","uniquename":"SJAG_04551"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pck1delta pmk1delta","display_uniquename":"pck1delta__pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]},{"display_name":"pmk1delta","display_uniquename":"pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]}],"name":"pmk1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"multiseptate cell","termid":"FYPO:0004295"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0002682","FYPO:0005447"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002683","FYPO:0001985","FYPO:0005447","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to caspofungin","termid":"FYPO:0000079"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_04551:allele-1"}


id: SJAG_04551:allele-2
data:
  {"allele_type":"amino_acid_insertion","alleles_by_uniquename":{},"description":"82-NITCIYDLDIIINPYNFNEVYIYEE-105","gene":{"name":"pmk1","product":"MAP kinase Pmk1","uniquename":"SJAG_04551"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Pmk1Sj(ins82-105)(82-NITCIYDLDIIINPYNFNEVYIYEE-105)","display_uniquename":"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"Pmk1Sj(ins82-105)","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0002494","FYPO:0001985","FYPO:0002274","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein phosphorylation during vegetative growth","termid":"FYPO:0001838"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0002682","FYPO:0005447"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"}],"references_by_uniquename":{},"uniquename":"SJAG_04551:allele-2"}


id: SJAG_04551:allele-3
data:
  {"allele_type":"other","alleles_by_uniquename":{},"description":"Pmk1 from S. pombe","gene":{"name":"pmk1","product":"MAP kinase Pmk1","uniquename":"SJAG_04551"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Pmk1Sp(Pmk1 from S. pombe)","display_uniquename":"Pmk1Sp-Pmk1_from_S._pombe-other-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"Pmk1Sp","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0002682","FYPO:0005447"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"}],"references_by_uniquename":{},"uniquename":"SJAG_04551:allele-3"}


id: SJAG_04551:allele-4
data:
  {"allele_type":"partial_amino_acid_deletion","alleles_by_uniquename":{},"description":"Pmk1 from S. pombe with deleted residues 82-105","gene":{"name":"pmk1","product":"MAP kinase Pmk1","uniquename":"SJAG_04551"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Pmk1Sp(delta82-105)(Pmk1 from S. pombe with deleted residues 82-105 Δaa)","display_uniquename":"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-4","expression":"Not assayed or wild type"}]}]}],"name":"Pmk1Sp(delta82-105)","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0002494","FYPO:0005447","FYPO:0002274"],"is_obsolete":false,"name":"abolished protein phosphorylation","termid":"FYPO:0002678"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0002274","FYPO:0001320","FYPO:0000002","FYPO:0002494"],"is_obsolete":false,"name":"abolished protein phosphorylation during vegetative growth","termid":"FYPO:0002033"},{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0002682","FYPO:0005447"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"}],"references_by_uniquename":{},"uniquename":"SJAG_04551:allele-4"}


id: SJAG_04574:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"clr4","product":"histone lysine H3-K9 methyltransferase (Suv39) Clr4","uniquename":"SJAG_04574"},"genes_by_uniquename":{},"genotypes":[{"display_name":"clr4delta","display_uniquename":"clr4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04574:allele-1","expression":"Null"}]}]},{"display_name":"clr4delta leo1delta","display_uniquename":"clr4delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04574:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]}],"name":"clr4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_04574:allele-1"}


id: SJAG_04671:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mrc1","product":"claspin, Mrc1","uniquename":"SJAG_04671"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mrc1delta","display_uniquename":"mrc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04671:allele-1","expression":"Null"}]}]}],"name":"mrc1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0002683","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002683","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"}],"references_by_uniquename":{},"uniquename":"SJAG_04671:allele-1"}


id: SJAG_04697:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"gms1","product":"Golgi UDP-galactose transmembrane transporter Gms1","uniquename":"SJAG_04697"},"genes_by_uniquename":{},"genotypes":[{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]}],"name":"gms1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"cell lysis during hyphal growth phase","termid":"FYPO:0008029"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0002058","FYPO:0002060","FYPO:0000139","FYPO:0002057","FYPO:0001985"],"is_obsolete":false,"name":"decreased cell population growth at high temperature","secondary_identifiers":["FYPO:0000247"],"termid":"FYPO:0000082"},{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0003290","FYPO:0002274","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0002494","FYPO:0002946"],"is_obsolete":false,"name":"galactose absent from cell wall glycoprotein glycan","termid":"FYPO:0003727"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0005447","FYPO:0002683","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to hygromycin B","termid":"FYPO:0000106"}],"references_by_uniquename":{},"uniquename":"SJAG_04697:allele-1"}


id: SJAG_04703:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"for3","product":"formin For3","uniquename":"SJAG_04703"},"genes_by_uniquename":{},"genotypes":[{"display_name":"for3delta","display_uniquename":"for3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04703:allele-1","expression":"Null"}]}]}],"name":"for3delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0004803","FYPO:0000002"],"is_obsolete":false,"name":"actin cables absent from cell","termid":"FYPO:0003315"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0002057","FYPO:0005447","FYPO:0000003","FYPO:0001985","FYPO:0002058","FYPO:0000139","FYPO:0002060"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"spherical cell","termid":"FYPO:0001956"}],"references_by_uniquename":{},"uniquename":"SJAG_04703:allele-1"}


id: SJAG_04777:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"win1","product":"MAP kinase kinase kinase Win1","uniquename":"SJAG_04777"},"genes_by_uniquename":{},"genotypes":[{"display_name":"win1delta","display_uniquename":"win1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04777:allele-1","expression":"Null"}]}]}],"name":"win1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_04777:allele-1"}


id: SJAG_04843:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"fum1","product":"fumarate hydratase","uniquename":"SJAG_04843"},"genes_by_uniquename":{},"genotypes":[{"display_name":"fum1delta","display_uniquename":"fum1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04843:allele-1","expression":"Null"}]}]}],"name":"fum1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_04843:allele-1"}


id: SJAG_04883:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ptp4","product":"phosphatidate cytidylyltransferase Ptp4/Dgk1","uniquename":"SJAG_04883"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ptp4delta","display_uniquename":"ptp4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04883:allele-1","expression":"Null"}]}]}],"name":"ptp4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal mitosis","termid":"FYPO:0001007"}],"references_by_uniquename":{},"uniquename":"SJAG_04883:allele-1"}


id: SJAG_04912:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps25","product":"ESCRT II complex subunit Vps25","uniquename":"SJAG_04912"},"genes_by_uniquename":{},"genotypes":[{"display_name":"vps25delta","display_uniquename":"vps25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04912:allele-1","expression":"Null"}]}]}],"name":"vps25delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal protein complex localization","termid":"FYPO:0001440"}],"references_by_uniquename":{},"uniquename":"SJAG_04912:allele-1"}


id: SJAG_05207:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"cmp7","product":"ESCRT III complex subunit, nuclear envelope specific subunit Cmp7","uniquename":"SJAG_05207"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cmp7delta","display_uniquename":"cmp7delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]}]},{"display_name":"cmp7delta vps4-ts(I307T L327S aa)","display_uniquename":"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"cmp7delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0002058","FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0002057","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002683","FYPO:0005447","FYPO:0000003","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to leptomycin B","termid":"FYPO:0000714"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000139","FYPO:0002057","FYPO:0000003","FYPO:0001985","FYPO:0002058","FYPO:0002060","FYPO:0005447"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_05207:allele-1"}


id: SJAG_05242:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wcs2","product":"blue light signalling transcription factor, zf-GATA type Wcs2","uniquename":"SJAG_05242"},"genes_by_uniquename":{},"genotypes":[{"display_name":"wcs2delta","display_uniquename":"wcs2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05242:allele-1","expression":"Null"}]}]}],"name":"wcs2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000298","FYPO:0000002"],"is_obsolete":false,"name":"abnormal blue light response","termid":"FYPO:0008031"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003"],"is_obsolete":false,"name":"decreased sexual agglutination in response to blue light","termid":"FYPO:0008046"}],"references_by_uniquename":{},"uniquename":"SJAG_05242:allele-1"}


# refs

id: GO_REF:0000028
data:
  {"abstract":"This GO reference describes the criteria used in assigning the evidence codes of IDA (ECO:0000314), IEP (ECO:0000270), ISS (ECO:0000250), IGC (ECO_0000317), RCA (ECO:0000245) and IEA (ECO:0000501) to annotate gene products from PAMGO_MGG. Standard BLASTP from NCBI was used (http://www.ncbi.nih.gov/blast) to iteratively search reciprocal best hits and thus identify orthologs between predicted proteins of Magnaporthe grisea and GO proteins from multiple organisms with published association to GO terms. The alignments were manually reviewed for those hits with e-value equal to zero and with 80% or better coverage of both query and subject sequences, and for those hits with e<=10^-20, pid >=35 and sequence coverage >=80%. Furthermore, experimental or reviewed data from literature and other sources were incorporated into the GO annotation. IDA was assigned to an annotation if normal function of its gene was determined through transfections into a cell line and overexpression. IEP was assigned to an annotation if according to microarray experiments, its gene was upregulated in a biological process and the fold change was equal to or bigger than 10, or if according to Massively Parallel Signature Sequencing (MPSS), its gene was upregulated only in a certain biological process and the fold change was equal to or bigger than 10. ISS was assigned to an annotation if the entry at the With_column was experimentally characterized and the pairwise alignments were manually reviewed. IGC was assigned to an annotation if it based on comparison and analysis of gene location and structure, clustering of genes, and phylogenetic reconstruction of these genes. RCA was assigned to an annotation if it based on integrated computational analysis of whole genome microarray data, and matches to InterPro, pfam, and COG etc. IEA was assigned to an annotation if its function assignment based on computational work, and no manual review was done.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"PAMGO_MGG curators","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Criteria for IDA, IEP, ISS, IGC, RCA, and IEA assignment in PAMGO_MGG","uniquename":"GO_REF:0000028"}


id: PMID:21905090
data:
  {"abstract":"The construction of diploid cells eases genetic analysis in haploid genetic systems because diploid cells allow for the characterization of essential genes. Here, we report the construction of diploid cells using ade6 point mutants that suppress each other via interallelic complementation in the fission yeast Schizosaccharomyces japonicus var japonicus (Sz. japonicus). We constructed an ade6-domK mutant in addition to the previously described ade6-domE. Phenotypes of both mutants exhibited adenine auxotrophy and red colonies. The mutations complemented the phenotypes in a mutually dependent manner. Diploid zygotes, in which the two mutations were introduced simultaneously into the same cells, were isolated by selecting for adenine independence. Such diploid cells are apparently larger in size than haploid cells, yet have a similar nuclear/cytoplasmic ratio, and thus the nuclear size control that has been reported in Sz. pombe is also present in Sz. japonicus.","alleles_by_uniquename":{"SJAG_01081:allele-1":{"allele_type":"nonsense_mutation","description":"S427>stop","gene_uniquename":"SJAG_01081","name":"ade6-domE","uniquename":"SJAG_01081:allele-1"},"SJAG_01081:allele-2":{"allele_type":"amino_acid_mutation","description":"Q262A","gene_uniquename":"SJAG_01081","name":"ade6-domK","uniquename":"SJAG_01081:allele-2"},"SJAG_01081:allele-3":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01081","name":"ade6delta","uniquename":"SJAG_01081:allele-3"}},"annotation_curators":[{"annotation_count":3,"community_curator":true,"file_name":null,"file_type":null,"name":"Sho Okamoto","orcid":null}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2022-11-23","authors":"Furuya K, Niki H","authors_abbrev":"Furuya K et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2022-11-23 13:21:47","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Sho Okamoto","canto_curator_role":"community","canto_first_approved_date":"2022-11-23 13:21:47","canto_session_key":"7c1c894d4ee8d8d3","canto_session_submitted_date":"2022-11-23 13:21:40","canto_triage_status":"Curatable","citation":"Yeast 2011 Oct;28(10):747-54","cv_annotations":{"single_locus_phenotype":[{"annotations":[115566,115567,115568],"is_not":false,"summary":null,"term":"FYPO:0000747"}]},"doi":"10.1002/yea.1898","gene_count":1,"genes_by_uniquename":{"SJAG_01081":null},"genotypes_by_uniquename":{"ade6-domE-S427>stop-nonsense_mutation-expression-not_assayed_or_wild_type":{"display_name":"ade6-domE(S427>stop)","display_uniquename":"ade6-domE-S427>stop-nonsense_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01081:allele-1","expression":"Not assayed or wild type"}]}]},"ade6-domK-Q262A-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ade6-domK(Q262A aa)","display_uniquename":"ade6-domK-Q262A-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01081:allele-2","expression":"Not assayed or wild type"}]}]},"ade6delta":{"display_name":"ade6delta","display_uniquename":"ade6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01081:allele-3","expression":"Null"}]}]}},"ltp_gene_count":1,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2011","pubmed_entrez_date":"2011-09-10","pubmed_publication_date":"Oct 2011","terms_by_termid":{"FYPO:0000747":null},"title":"Construction of diploid zygotes by interallelic complementation of ade6 in Schizosaccharomyces japonicus.","uniquename":"PMID:21905090"}


id: PMID:20368354
data:
  {"abstract":"Dimorphic yeasts change between unicellular growth and filamentous growth. Many dimorphic yeasts species are pathogenic for humans and plants, being infectious as invasive hypha. We have studied the determinants of the dimorphic switch in the nonpathogenic fission yeast Schizosaccharomyces japonicus, which is evolutionarily close to the well-characterized fission yeast S. pombe. We report that camptothecin, an inhibitor of topoisomerase I, reversibly induced the unicellular to hyphal transition in S. japonicus at low concentrations of camptothecin that did not induce checkpoint arrest and the transition required the DNA checkpoint kinase Chk1. Furthermore, a mutation of chk1 induced hyphal transition without camptothecin. Thus, we identify a second function for Chk1 distinct from its role in checkpoint arrest. Activation of the switch from single cell bipolar growth to monopolar filamentous growth may assist cells to evade the source of DNA damage.","alleles_by_uniquename":{"SJAG_01410:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01410","name":"rad51delta","uniquename":"SJAG_01410:allele-1"},"SJAG_01605:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01605","name":"rad9delta","uniquename":"SJAG_01605:allele-1"},"SJAG_01680:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01680","name":"chk1delta","uniquename":"SJAG_01680:allele-1"},"SJAG_01680:allele-2":{"allele_type":"amino_acid_mutation","description":"P470L","gene_uniquename":"SJAG_01680","name":"chk1-P470L","synonyms":[{"name":"chk1- hyperactive (chk1-hyp)","reference":"PMID:23090706","type":"exact"},{"name":"chk1-hyperactive (chk1-hyp)","reference":"PMID:20368354","type":"exact"}],"uniquename":"SJAG_01680:allele-2"}},"annotation_curators":[{"annotation_count":6,"community_curator":true,"file_name":null,"file_type":null,"name":"Sho Okamoto","orcid":null}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2022-11-21","authors":"Furuya K, Niki H","authors_abbrev":"Furuya K et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2022-11-21 16:35:04","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Sho Okamoto","canto_curator_role":"community","canto_first_approved_date":"2022-11-21 16:35:04","canto_session_key":"f81a194894ea8808","canto_session_submitted_date":"2022-11-21 16:34:55","canto_triage_status":"Curatable","citation":"Mol Cell Biol 2010 Jun;30(12):2909-17","cv_annotations":{"single_locus_phenotype":[{"annotations":[115499,115503],"is_not":false,"summary":null,"term":"FYPO:0007782"},{"annotations":[115498],"is_not":false,"summary":null,"term":"FYPO:0007774"},{"annotations":[115500,115501,115502],"is_not":false,"summary":null,"term":"FYPO:0000085"}]},"doi":"10.1128/MCB.00049-10","gene_count":3,"genes_by_uniquename":{"SJAG_01410":null,"SJAG_01605":null,"SJAG_01680":null},"genotypes_by_uniquename":{"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"chk1-P470L(aa)","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]}]},"chk1delta":{"display_name":"chk1delta","display_uniquename":"chk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-1","expression":"Null"}]}]},"rad51delta":{"display_name":"rad51delta","display_uniquename":"rad51delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01410:allele-1","expression":"Null"}]}]},"rad9delta":{"display_name":"rad9delta","display_uniquename":"rad9delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01605:allele-1","expression":"Null"}]}]}},"ltp_gene_count":3,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2010","pubmed_entrez_date":"2010-04-07","pubmed_publication_date":"Jun 2010","references_by_uniquename":{"PMID:20368354":null,"PMID:23090706":null},"terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000314":null,"FYPO:0000085":null,"FYPO:0007774":null,"FYPO:0007782":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null},"title":"The DNA damage checkpoint regulates a transition between yeast and hyphal growth in Schizosaccharomyces japonicus.","uniquename":"PMID:20368354"}


id: PMID:19473263
data:
  {"abstract":"Schizosaccharomyces cells divide by medial septation, followed by enzymatic degradation of parts of the septum (septum cleavage) to allow the sister cells to separate from each other. In a previous study we found that the cell separation mutant sep9-307 was defective in a gene that encodes a protein highly similar in sequence to the Saccharomyces cerevisiae protein Spt8, a subunit of the SAGA complex. Here, we show that the sep9-307 mutation causes a frameshift in translation. The deletion of sep9(+) is not lethal but abolishes normal septum cleavage by reducing the activity of ace2(+), a gene coding for a transcription factor of numerous genes producing proteins for septum cleavage. Indirect evidence indicates that Sep9 might also act directly in the transcription of certain target genes (e.g. eng1(+)) of this regulator. sep9-307 is synthetically lethal with mutations in the cell separation genes sep11/med18(+) and sep15/med8(+), which encode subunits of the general transcription factor mediator. Heterologous expression of SPT8 and the putative Schizosaccharomyces japonicus sep9(+) orthologue cannot substitute for sep9(+). Both Spt8 and the fission yeast proteins have highly acidic (74-76 amino-acid long) N-terminal regions with no sequence conservation.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Batta G, Szilagyi Z, Laczik M, Sipiczki M","authors_abbrev":"Batta G et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Sequence feature or region","citation":"FEMS Yeast Res 2009 Aug;9(5):757-67","cv_annotations":{},"doi":"10.1111/j.1567-1364.2009.00522.x","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2009","pubmed_entrez_date":"2009-05-29","pubmed_publication_date":"Aug 2009","terms_by_termid":{},"title":"The involvement of the Schizosaccharomyces pombe sep9/spt8 gene in the regulation of septum cleavage.","uniquename":"PMID:19473263"}


id: PMID:22641476
data:
  {"abstract":"Measuring relative genetic distances is one of the best ways to locate genetic loci. Here we report the construction of a strains set for genetic mapping in Schizosaccharomyces japonicus, which belongs to the genus Schizosaccharomyces together with the well-studied fission yeast Sz. pombe. We constructed 29 strains that bear a positive-negative selection marker at different loci. The marker was inserted every 500 kb in the genome of Sz. japonicus. Each marker thus becomes a 'scale mark' of a chromosome that behaves like a yardstick. By determining the genetic distances from the inserted markers, the relative location of a genomic mutation can be determined. We also constructed a fosmid library that covers an entire genome of Sz. japonicus. These tools together would facilitate identification and cloning of the gene.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Furuya K, Aoki K, Niki H","authors_abbrev":"Furuya K et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Method or reagent","citation":"Yeast 2012 Jun;29(6):241-9","cv_annotations":{},"doi":"10.1002/yea.2907","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2012","pubmed_entrez_date":"2012-05-30","pubmed_publication_date":"Jun 2012","terms_by_termid":{},"title":"Construction of an insertion marker collection of Sz. japonicus (IMACS) for genetic mapping and a fosmid library covering its genome.","uniquename":"PMID:22641476"}


id: PMID:32140970
data:
  {"abstract":"In eukaryotes, chromosome ends (telomeres) are tethered to the inner nuclear membrane. During the early stages of meiosis, telomeres move along the nuclear membrane and gather near the spindle-pole body, resulting in a bouquet-like arrangement of chromosomes. This chromosomal configuration appears to be widely conserved among eukaryotes, and is assumed to play an important role in the normal progression of meiosis, by mediating the proper pairing of homologous chromosomes. In fission yeast, the Bqt1-Bqt2 protein complex plays a key role in tethering the telomere to the inner nuclear membrane. However, the structural details of the complex required to clarify how telomeres are gathered near the spindle-pole body remain enigmatic. Previously, we devised a preparation procedure for the Schizosaccharomyces japonicus Bqt1-Bqt2 complex, in which a SUMO tag was fused to the N-terminus of the Bqt1 protein. This allowed us to purify the Bqt1-Bqt2 complex from the soluble fraction. In the present study, we found that a maltose-binding protein homolog, Athe_0614, served as a better fusion partner than the SUMO protein, resulting in the marked increase in the solubility of the Bqt1-Bqt2 complex. The Athe_0614 fusion partner may open up new avenues for X-ray crystallographic analyses of the structure of the Bqt1-Bqt2 complex.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Yuzurihara H, Aizawa Y, Saotome M, Ichikawa Y, Yokoyama H, Chikashige Y, Haraguchi T, Hiraoka Y, Kurumizaka H, Kagawa W","authors_abbrev":"Yuzurihara H et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Method or reagent","citation":"Protein J 2020 04;39(2):174-181","cv_annotations":{},"doi":"10.1007/s10930-020-09887-z","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2020","pubmed_entrez_date":"2020-03-07","pubmed_publication_date":"04 2020","terms_by_termid":{},"title":"Improved Methods for Preparing the Telomere Tethering Complex Bqt1-Bqt2 for Structural Studies.","uniquename":"PMID:32140970"}


id: PMID:28228545
data:
  {"abstract":"Inactivation of retrotransposons is accompanied by the emergence of centromere-binding protein-B (CENPB) in  Schizosaccharomyces , as well as in metazoans. The RNA interference (RNAi)-induced transcriptional silencing (RITS) complex, comprising chromodomain protein-1 (Chp1), Tas3 (protein with unknown function), and Argonaute (Ago1), plays an important role in RNAi-mediated heterochromatinization. We find that whereas the Ago1 subunit of the RITS complex is highly conserved, Tas3 is lost and Chp1 is truncated in  Schizosaccharomyces cryophilus  and  Schizosaccharomyces octosporus  We show that truncated Chp1 loses the property of heterochromatin localization and silencing when transformed in  Schizosaccharomyces pombe  Furthermore, multiple copies of CENPB, related to  Tc1/mariner and Tc5  transposons, occur in all  Schizosaccharomyces  species, as well as in humans, but with loss of transposase function (except  Schizosaccharomyces japonicus ). We propose that acquisition of  Tc1/mariner and Tc5  elements by horizontal transfer in  S. pombe  (and humans) is accompanied by alteration of their function from a transposase/endonuclease to a heterochromatin protein, designed to suppress transposon expression and recombination. The resulting redundancy of RITS may have eased the selection pressure, resulting in progressive loss or truncation of  tas3  and  chp1  genes in  S. octosporus  and  S. cryophilus  and triggered similar evolutionary dynamics in the metazoan orthologues.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Upadhyay U, Srivastava S, Khatri I, Nanda JS, Subramanian S, Arora A, Singh J","authors_abbrev":"Upadhyay U et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Phylogeny and evolutionary studies","citation":"Mol Biol Cell 2017 Apr 15;28(8):1132-1146","cv_annotations":{},"doi":"10.1091/mbc.E16-07-0485","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2017","pubmed_entrez_date":"2017-02-24","pubmed_publication_date":"15 Apr 2017","terms_by_termid":{},"title":"Ablation of RNA interference and retrotransposons accompany acquisition and evolution of transposases to heterochromatin protein CENPB.","uniquename":"PMID:28228545"}


id: GO_REF:0000096
data:
  {"abstract":"Mouse Genome Database (MGD), The HUGO Gene Nomenclature Committee (HGNC), and Rat Genome Database (RGD) have extensive procedures in place, overseen by expert curation, to establish orthology relationships between their genes. The Experimentally based annotations annotated by each group (IDA, IMP IPI, IGI, and EXP) are used to provide annotations  to the respective mouse and rat orthologs, and given the ISO evidence code and an entry in the inferred_from field to indicate the orthologous entity. ","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Mouse Genome Informatics scientific curators","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Automated transfer of experimentally-verified manual GO annotation data to close orthologs.","uniquename":"GO_REF:0000096"}


id: GO_REF:0000003
data:
  {"abstract":"Transitive assignment using Enzyme Commission identifiers. This method is used for any database entry, such as a protein record in UniProtKB or TrEMBL, that has had an Enzyme Commission number assigned. The corresponding GO term is determined using the EC cross-references in the GO molecular function ontology. Also see Hill et al., Genomics (2001) 74:121-128. The mapping file is available at http://www.geneontology.org/external2go/ec2go.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GOA curators, MGI curators","canto_curator_role":"JaponicusDB","cv_annotations":{"molecular_function":[{"annotations":[68454],"is_not":false,"summary":null,"term":"GO:0003925"},{"annotations":[58964],"is_not":false,"summary":null,"term":"GO:0043864"},{"annotations":[65152],"is_not":false,"summary":null,"term":"GO:0052832"},{"annotations":[65153],"is_not":false,"summary":null,"term":"GO:0052833"},{"annotations":[67999],"is_not":false,"summary":null,"term":"GO:1990817"},{"annotations":[60874],"is_not":false,"summary":null,"term":"GO:0102389"}]},"gene_count":5,"genes_by_uniquename":{"SJAG_02383":null,"SJAG_02721":null,"SJAG_03739":null,"SJAG_04509":null,"SJAG_04954":null},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{"GO:0003925":null,"GO:0043864":null,"GO:0052832":null,"GO:0052833":null,"GO:0102389":null,"GO:1990817":null},"title":"Gene Ontology annotation based on Enzyme Commission mapping","uniquename":"GO_REF:0000003"}


id: PMID:29566183
data:
  {"abstract":"Dimorphic yeasts transform into filamentous cells or hyphae in response to environmental cues. The mechanisms for the hyphal transition of dimorphic yeasts have mainly been studied in Candida albicans, an opportunistic human fungal pathogen. The Ras1-MAPK pathway is a major signal transduction pathway for hyphal transition in C. albicans. Recently, the non-pathogenic dimorphic yeast Schizosaccharomyces japonicus has also been used for genetic analyses of hyphal induction. We confirmed that Ras1-MAPK and other MAPK pathways exist in Sz. japonicus. To examine how hyphal transition is induced by environmental stress-triggered signal transduction, we studied the hyphal transition of deletion mutants of MAPK pathways in Sz. japonicus. We found that the MAPK pathways are not involved in hyphal induction, although the mating response is dependent on these pathways. However, only Ras1 deletion caused a severe defect in hyphal development via both DNA damage and environmental stressors. In fact, genes on the Cdc42 branch of the Ras1 (Ras1-Cdc42) pathway, efc25Sj, scd1Sj and scd2Sj, are required for hyphal development. Cell morphology analysis indicated that the apical growth of hyphal cells was inhibited in Ras1-Cdc42-pathway deletion mutants. Thus, the control of cell polarity by the Ras1-Cdc42 pathway is crucial for hyphal development.","alleles_by_uniquename":{"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"},"SJAG_00993:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00993","name":"byr1delta","uniquename":"SJAG_00993:allele-1"},"SJAG_01181:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01181","name":"pek1delta","uniquename":"SJAG_01181:allele-1"},"SJAG_01718:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01718","name":"byr2delta","uniquename":"SJAG_01718:allele-1"},"SJAG_01794:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01794","name":"scd2delta","uniquename":"SJAG_01794:allele-1"},"SJAG_02342:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02342","name":"wis1delta","uniquename":"SJAG_02342:allele-1"},"SJAG_02379:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02379","name":"gap1delta","uniquename":"SJAG_02379:allele-1"},"SJAG_02486:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02486","name":"ste6delta","uniquename":"SJAG_02486:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_02819:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02819","name":"efc25delta","uniquename":"SJAG_02819:allele-1"},"SJAG_02923:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02923","name":"spk1delta","uniquename":"SJAG_02923:allele-1"},"SJAG_03384:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03384","name":"wis4delta","uniquename":"SJAG_03384:allele-1"},"SJAG_03453:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03453","name":"ras1delta","uniquename":"SJAG_03453:allele-1"},"SJAG_03753:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03753","name":"mkh1delta","uniquename":"SJAG_03753:allele-1"},"SJAG_04009:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04009","name":"ste11delta","uniquename":"SJAG_04009:allele-1"},"SJAG_04551:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04551","name":"pmk1delta","uniquename":"SJAG_04551:allele-1"},"SJAG_04777:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04777","name":"win1delta","uniquename":"SJAG_04777:allele-1"}},"annotation_curators":[{"annotation_count":38,"community_curator":true,"file_name":null,"file_type":null,"name":"Sho Okamoto","orcid":null}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2022-11-18","authors":"Nozaki S, Furuya K, Niki H","authors_abbrev":"Nozaki S et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2022-11-18 13:44:52","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Sho Okamoto","canto_curator_role":"community","canto_first_approved_date":"2022-11-18 13:44:52","canto_session_key":"18862c3d67da0cb0","canto_session_submitted_date":"2022-11-18 13:44:26","canto_triage_status":"Curatable","citation":"FEMS Yeast Res 2018 06 01;18(4)","cv_annotations":{"single_locus_phenotype":[{"annotations":[115235],"is_not":false,"summary":null,"term":"FYPO:0007773"},{"annotations":[115218,115219,115228,115250,115251],"is_not":false,"summary":null,"term":"FYPO:0007789"},{"annotations":[115247],"is_not":false,"summary":null,"term":"FYPO:0000584"},{"annotations":[115217,115221,115225],"is_not":false,"summary":null,"term":"FYPO:0001355"},{"annotations":[115249],"is_not":false,"summary":null,"term":"FYPO:0007790"},{"annotations":[115216,115222,115223,115227,115230,115232,115233,115246,115248],"is_not":false,"summary":null,"term":"FYPO:0000280"},{"annotations":[115224,115229,115231,115234,115236,115237,115238,115239,115240,115241,115242,115243,115244,115245],"is_not":false,"summary":null,"term":"FYPO:0000124"},{"annotations":[115215,115220,115226,115252],"is_not":false,"summary":null,"term":"FYPO:0002380"}]},"doi":"10.1093/femsyr/foy031","gene_count":17,"genes_by_uniquename":{"SJAG_00514":null,"SJAG_00993":null,"SJAG_01181":null,"SJAG_01718":null,"SJAG_01794":null,"SJAG_02342":null,"SJAG_02379":null,"SJAG_02486":null,"SJAG_02592":null,"SJAG_02819":null,"SJAG_02923":null,"SJAG_03384":null,"SJAG_03453":null,"SJAG_03753":null,"SJAG_04009":null,"SJAG_04551":null,"SJAG_04777":null},"genotypes_by_uniquename":{"byr1delta":{"display_name":"byr1delta","display_uniquename":"byr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00993:allele-1","expression":"Null"}]}]},"byr2delta":{"display_name":"byr2delta","display_uniquename":"byr2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01718:allele-1","expression":"Null"}]}]},"efc25delta":{"display_name":"efc25delta","display_uniquename":"efc25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02819:allele-1","expression":"Null"}]}]},"gap1delta":{"display_name":"gap1delta","display_uniquename":"gap1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02379:allele-1","expression":"Null"}]}]},"mkh1delta":{"display_name":"mkh1delta","display_uniquename":"mkh1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03753:allele-1","expression":"Null"}]}]},"pek1delta":{"display_name":"pek1delta","display_uniquename":"pek1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01181:allele-1","expression":"Null"}]}]},"pmk1delta":{"display_name":"pmk1delta","display_uniquename":"pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]},"ras1delta":{"display_name":"ras1delta","display_uniquename":"ras1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03453:allele-1","expression":"Null"}]}]},"scd1delta":{"display_name":"scd1delta","display_uniquename":"scd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00514:allele-1","expression":"Null"}]}]},"scd2delta":{"display_name":"scd2delta","display_uniquename":"scd2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01794:allele-1","expression":"Null"}]}]},"spk1delta":{"display_name":"spk1delta","display_uniquename":"spk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02923:allele-1","expression":"Null"}]}]},"ste11delta":{"display_name":"ste11delta","display_uniquename":"ste11delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04009:allele-1","expression":"Null"}]}]},"ste6delta":{"display_name":"ste6delta","display_uniquename":"ste6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02486:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]},"win1delta":{"display_name":"win1delta","display_uniquename":"win1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04777:allele-1","expression":"Null"}]}]},"wis1delta":{"display_name":"wis1delta","display_uniquename":"wis1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02342:allele-1","expression":"Null"}]}]},"wis4delta":{"display_name":"wis4delta","display_uniquename":"wis4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03384:allele-1","expression":"Null"}]}]}},"ltp_gene_count":17,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2018","pubmed_entrez_date":"2018-03-23","pubmed_publication_date":"01 06 2018","terms_by_termid":{"FYECO:0000137":null,"FYPO:0000124":null,"FYPO:0000280":null,"FYPO:0000584":null,"FYPO:0001355":null,"FYPO:0002380":null,"FYPO:0007773":null,"FYPO:0007789":null,"FYPO:0007790":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null},"title":"The Ras1-Cdc42 pathway is involved in hyphal development of Schizosaccharomyces japonicus.","uniquename":"PMID:29566183"}


id: GO_REF:0000097
data:
  {"abstract":"FlyBase occasionally makes GO annotations based on information that has been sent to us directly by researchers as a personal communication to FlyBase. In each case, the full details of the communication including any associated data and analyses are recorded in a FlyBase publication (FBrf) available from our website (http://flybase.org).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"FlyBase","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Gene Ontology annotation based on personal communication to FlyBase","uniquename":"GO_REF:0000097"}


id: GO_REF:0000060
data:
  {"abstract":"We have created a standard template for classes describing processes involved in other processes. The underlying equivalence axiom template is \"P and 'part_of' some W\", where P and W are biological processes.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of processes involved in other process in the Gene Ontology","uniquename":"GO_REF:0000060"}


id: PMID:7166567
data:
  {"abstract":"The fine structure of ascospore formation in the fission yeasts Schizosaccharomyces pombe and Schizosaccharomyces japonicus var. japonicus was studied by serial thin-sectioning and electron microscopy. The morphogenetic events were almost the same in both species. Ascospore development was initiated by the formation of the forespore membrane on the cytoplasmic side of the differentiated nucleus-associated organelle (NAO) in the interval between meiosis I and II in S. pombe, or during the post-meiotic nuclear division in S. japonicus, and the process proceeded almost synchronously through the two or four nuclei in the ascus. The forespore membrane developed by fusion of the cytoplasmic vesicles and this was clearly demonstrated in S. japonicus where the behaviour of vesicles involved in the forespore membrane development could be traced as they were marked by the presence of electron-dense granules. The staining technique, by phosphotungustic acid--chromic acid (PTA-CA) after treatment with periodic acid, was used to attempt to elucidate the origin and the nature of the forespore membrane. The method specific to plasmalemma-type membranes stained both ascus and ascospore plasmalemmas; the forespore membrane was not stained at first but developed the same affinity for stain as the plasma membrane in the course of ascospore development. The results suggest that the forespore membrane did not come directly from the ascus plasma membrane, but from another membrane system such as the endoplasmic reticulum. Spore wall material was deposited in the space between the inner and outer leaflets of the forespore membrane.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Tanaka K, Hirata A","authors_abbrev":"Tanaka K et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"J Cell Sci 1982 Aug;56:263-79","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"1982","pubmed_entrez_date":"1982-08-01","pubmed_publication_date":"Aug 1982","terms_by_termid":{},"title":"Ascospore development in the fission yeasts Schizosaccharomyces pombe and S. japonicus.","uniquename":"PMID:7166567"}


id: GO_REF:0000071
data:
  {"abstract":"We have created a standard template for classes describing the response to and cellular response to a chemical entity (ChEBI) as a biological process. The underlying equivalence axiom templates are \"GO:0050896 and 'has input' some X\" (response to) and \"GO:0070887 and 'has input' some X\" (cellular response to), where X is a chemical entity (CHEBI:24431). The approach to combine GO and ChEBI has been described in the following publication: PMID:23895341.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of response to and cellular response to a chemical as biological process in the Gene Ontology","uniquename":"GO_REF:0000071"}


id: GO_REF:0000117
data:
  {"abstract":"Association-Rule-Based Annotator (ARBA) predicts Gene Ontology (GO) terms among other types of functional annotation such as Protein Description (DE), Keywords (KW), Enzyme Commission numbers (EC), subcellular LOcation (LO), etc. For all annotation types, reviewed UniProtKB/Swiss-Prot records having manual annotations as reference data are used to perform the machine learning phase and generate prediction models. For GO terms, ARBA has an additional feature to augment reference data using the relations between GO terms in the GO graph. The data augmentation is based on adding more general annotations into records containing manual GO terms, which will result in richer reference data. The predicted GO terms are then propagated to all unreviewed UniProtKB/TrEMBL proteins that meet the conditions of ARBA models. GO annotations using this technique receive the evidence code Inferred from Electronic Annotation (IEA; ECO:0000501).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"UniProt","canto_curator_role":"JaponicusDB","cv_annotations":{"biological_process":[{"annotations":[59121],"is_not":false,"summary":null,"term":"GO:0006281"},{"annotations":[67596],"is_not":false,"summary":null,"term":"GO:0016197"},{"annotations":[59127,64372,67369],"is_not":false,"summary":null,"term":"GO:0040029"},{"annotations":[63434],"is_not":false,"summary":null,"term":"GO:0051649"},{"annotations":[67121],"is_not":false,"summary":null,"term":"GO:0044281"},{"annotations":[58512,65383],"is_not":false,"summary":null,"term":"GO:0006772"}],"cellular_component":[{"annotations":[63070],"is_not":false,"summary":null,"term":"GO:0005680"},{"annotations":[62448,64973],"is_not":false,"summary":null,"term":"GO:0005938"},{"annotations":[64974],"is_not":false,"summary":null,"term":"GO:0032153"},{"annotations":[58580],"is_not":false,"summary":null,"term":"GO:0000785"},{"annotations":[59189],"is_not":false,"summary":null,"term":"GO:0005737"}],"molecular_function":[{"annotations":[64972],"is_not":false,"summary":null,"term":"GO:0005096"},{"annotations":[59128],"is_not":false,"summary":null,"term":"GO:0097159"}]},"gene_count":14,"genes_by_uniquename":{"SJAG_00510":null,"SJAG_00551":null,"SJAG_00773":null,"SJAG_00907":null,"SJAG_01445":null,"SJAG_01742":null,"SJAG_01869":null,"SJAG_01943":null,"SJAG_02047":null,"SJAG_03675":null,"SJAG_04180":null,"SJAG_05161":null,"SJAG_06608":null,"SJAG_06641":null},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{"GO:0000785":null,"GO:0005096":null,"GO:0005680":null,"GO:0005737":null,"GO:0005938":null,"GO:0006281":null,"GO:0006772":null,"GO:0016197":null,"GO:0032153":null,"GO:0040029":null,"GO:0044281":null,"GO:0051649":null,"GO:0097159":null},"title":"Electronic Gene Ontology annotations created by ARBA machine learning models","uniquename":"GO_REF:0000117"}


id: PMID:35226668
data:
  {"abstract":"RNA interference (RNAi) is a conserved mechanism of small RNA-mediated genome regulation commonly involved in suppression of transposable elements (TEs) through both post-transcriptional silencing, and transcriptional repression via heterochromatin assembly. The fission yeast Schizosaccharomyces pombe has been extensively utilised as a model for studying RNAi pathways. However, this species is somewhat atypical in that TEs are not major targets of RNAi, and instead small RNAs correspond primarily to non-coding pericentromeric repeat sequences, reflecting a specialised role for the pathway in promoting heterochromatin assembly in these regions. In contrast, in the related fission yeast Schizosaccharomyces japonicus, sequenced small RNAs correspond primarily to TEs. This suggests there may be fundamental differences in the operation of RNAi pathways in these two related species. To investigate these differences, we probed RNAi function in S. japonicus. Unexpectedly, and in contrast to S. pombe, we found that RNAi is essential in this species. Moreover, viability of RNAi mutants can be rescued by mutations implicated in enhancing RNAi-independent heterochromatin propagation. These rescued strains retain heterochromatic marks on TE sequences, but exhibit derepression of TEs at the post-transcriptional level. Our findings indicate that S. japonicus retains the ancestral role of RNAi in facilitating suppression of TEs via both post-transcriptional silencing and heterochromatin assembly, with specifically the heterochromatin pathway being essential for viability, likely due to a function in genome maintenance. The specialised role of RNAi in heterochromatin assembly in S. pombe appears to be a derived state that emerged after the divergence of S. japonicus.","alleles_by_uniquename":{"SJAG_02409:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02409","name":"stc1delta","uniquename":"SJAG_02409:allele-1"},"SJAG_02594:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02594","name":"arb1delta","uniquename":"SJAG_02594:allele-1"},"SJAG_02621:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02621","name":"ago1delta","uniquename":"SJAG_02621:allele-1"},"SJAG_02668:allele-1":{"allele_type":"amino_acid_mutation","description":"R77W","gene_uniquename":"SJAG_02668","name":"mpe1-R77W","uniquename":"SJAG_02668:allele-1"},"SJAG_03118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03118","name":"leo1delta","uniquename":"SJAG_03118:allele-1"},"SJAG_03118:allele-2":{"allele_type":"nonsense_mutation","description":"aa61->stop","gene_uniquename":"SJAG_03118","name":"frameshift","uniquename":"SJAG_03118:allele-2"},"SJAG_03356:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03356","name":"rdp1delta","uniquename":"SJAG_03356:allele-1"},"SJAG_03689:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03689","name":"dcr1delta","uniquename":"SJAG_03689:allele-1"},"SJAG_03916:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03916","name":"chp1delta","uniquename":"SJAG_03916:allele-1"},"SJAG_04061:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04061","name":"arb2delta","uniquename":"SJAG_04061:allele-1"},"SJAG_04574:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04574","name":"clr4delta","uniquename":"SJAG_04574:allele-1"}},"annotation_curators":[{"annotation_count":31,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2022-03-07","authors":"Chapman E, Taglini F, Bayne EH","authors_abbrev":"Chapman E et al.","canto_added_date":"2022-03-07 09:13:19","canto_annotation_status":"APPROVED","canto_approved_date":"2022-03-07 12:35:06","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2022-03-07 12:35:06","canto_session_key":"3d6467bf1cb92446","canto_session_submitted_date":"2022-03-07 12:34:56","canto_triage_status":"Curatable","citation":"PLoS Genet 2022 Feb 28;18(2):e1010100","cv_annotations":{"biological_process":[{"annotations":[115531,115532],"is_not":false,"summary":null,"term":"GO:0031507"},{"annotations":[115529,115530],"is_not":false,"summary":null,"term":"GO:0016441"}],"multi_locus_phenotype":[{"annotations":[115525,115527],"is_not":false,"summary":null,"term":"FYPO:0004982"},{"annotations":[115526,115528],"is_not":false,"summary":null,"term":"FYPO:0004573"},{"annotations":[115522],"is_not":false,"summary":null,"term":"FYPO:0002061"},{"annotations":[115523,115524],"is_not":false,"summary":null,"term":"FYPO:0006989"},{"annotations":[115517,115518,115519,115520],"is_not":false,"summary":null,"term":"FYPO:0002058"}],"single_locus_phenotype":[{"annotations":[115511],"is_not":false,"summary":null,"term":"FYPO:0004205"},{"annotations":[115513],"is_not":false,"summary":null,"term":"FYPO:0004982"},{"annotations":[115515],"is_not":false,"summary":null,"term":"FYPO:0000595"},{"annotations":[115512],"is_not":false,"summary":null,"term":"FYPO:0004574"},{"annotations":[115504,115505,115506,115507,115508,115509,115510,115521],"is_not":false,"summary":null,"term":"FYPO:0002061"},{"annotations":[115516],"is_not":false,"summary":null,"term":"FYPO:0006989"},{"annotations":[115514],"is_not":false,"summary":null,"term":"FYPO:0000596"}]},"doi":"10.1371/journal.pgen.1010100","gene_count":10,"genes_by_uniquename":{"SJAG_02409":null,"SJAG_02594":null,"SJAG_02621":null,"SJAG_02668":null,"SJAG_03118":null,"SJAG_03356":null,"SJAG_03689":null,"SJAG_03916":null,"SJAG_04061":null,"SJAG_04574":null},"genetic_interactions":[[{"gene_a_uniquename":"SJAG_03689","gene_b_uniquename":"SJAG_02668","interaction_type":"Phenotypic 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japonicus.","uniquename":"PMID:35226668"}


id: PMID:32109380
data:
  {"abstract":"Eukaryotic genomes are organized within the nucleus through interactions with inner nuclear membrane (INM) proteins. How chromatin tethering to the INM is controlled in interphase and how this process contributes to subsequent mitotic nuclear envelope (NE) remodeling remains unclear. We have probed these fundamental questions using the fission yeast Schizosaccharomyces japonicus, which breaks and reforms the NE during mitosis. We show that attachments between heterochromatin and the transmembrane Lem2-Nur1 complex at the INM are remodeled in interphase by the ESCRT-III/Vps4 machinery. Failure of ESCRT-III/Vps4 to release Lem2-Nur1 from heterochromatin leads to persistent association of chromosomes with the INM throughout mitosis. At mitotic exit, such trapping of Lem2-Nur1 on heterochromatin prevents it from re-establishing nucleocytoplasmic compartmentalization. Our work identifies the Lem2-Nur1 complex as a substrate for the nuclear ESCRT machinery and explains how the dynamic tethering of chromosomes to the INM is linked to the establishment of nuclear compartmentalization.","alleles_by_uniquename":{"SJAG_01050:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01050","name":"nur1delta","uniquename":"SJAG_01050:allele-1"},"SJAG_01242:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01242","name":"vps32delta","uniquename":"SJAG_01242:allele-1"},"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_03250:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03250","name":"sst4delta","uniquename":"SJAG_03250:allele-1"},"SJAG_03783:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03783","name":"vps24delta","uniquename":"SJAG_03783:allele-1"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"},"SJAG_03892:allele-2":{"allele_type":"amino_acid_mutation","description":"E233Q","gene_uniquename":"SJAG_03892","name":"Vps4-EQ","uniquename":"SJAG_03892:allele-2"},"SJAG_03892:allele-3":{"allele_type":"amino_acid_mutation","description":"I307T L327S","gene_uniquename":"SJAG_03892","name":"vps4-ts","uniquename":"SJAG_03892:allele-3"},"SJAG_04349:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04349","name":"vps28delta","uniquename":"SJAG_04349:allele-1"},"SJAG_04489:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04489","name":"did4delta","uniquename":"SJAG_04489:allele-1"},"SJAG_04912:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04912","name":"vps25delta","uniquename":"SJAG_04912:allele-1"},"SJAG_05207:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05207","name":"cmp7delta","uniquename":"SJAG_05207:allele-1"}},"annotation_curators":[{"annotation_count":53,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-06-17","authors":"Pieper GH, Sprenger S, Teis D, Oliferenko S","authors_abbrev":"Pieper GH et al.","canto_added_date":"2021-05-10 02:37:07","canto_annotation_status":"APPROVED","canto_approved_date":"2021-06-17 17:46:25","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-06-17 17:46:25","canto_session_key":"89c611dbc0229af1","canto_session_submitted_date":"2021-06-17 17:46:16","canto_triage_status":"Curatable","citation":"Dev Cell 2020 04 06;53(1):27-41.e6","cv_annotations":{"cellular_component":[{"annotations":[115357],"is_not":false,"summary":null,"term":"GO:0000781"},{"annotations":[115355],"is_not":false,"summary":null,"term":"GO:0005783"},{"annotations":[115377],"is_not":false,"summary":null,"term":"GO:0000792"},{"annotations":[115382],"is_not":false,"summary":null,"term":"GO:1990343"},{"annotations":[115339],"is_not":false,"summary":null,"term":"GO:0000776"},{"annotations":[115359],"is_not":false,"summary":null,"term":"GO:0005771"},{"annotations":[115361],"is_not":false,"summary":null,"term":"GO:0032585"},{"annotations":[115360,115362],"is_not":false,"summary":null,"term":"GO:0031965"},{"annotations":[115383],"is_not":false,"summary":null,"term":"GO:0005643"},{"annotations":[115340,115345,115363],"is_not":false,"summary":null,"term":"GO:0005816"}],"molecular_function":[{"annotations":[115338],"is_not":false,"summary":null,"term":"GO:0043515"}],"multi_locus_phenotype":[{"annotations":[115368],"is_not":false,"summary":null,"term":"FYPO:0007771"},{"annotations":[115379],"is_not":false,"summary":null,"term":"FYPO:0001132"}],"single_locus_phenotype":[{"annotations":[115364,115365,115366],"is_not":false,"summary":null,"term":"FYPO:0001440"},{"annotations":[115375,115376],"is_not":false,"summary":null,"term":"FYPO:0001370"},{"annotations":[115378],"is_not":false,"summary":null,"term":"FYPO:0004718"},{"annotations":[115343,115344,115350,115351,115353,115354,115367,115369,115370,115371,115372,115373,115374],"is_not":false,"summary":null,"term":"FYPO:0007771"},{"annotations":[115356],"is_not":false,"summary":null,"term":"FYPO:0004318"},{"annotations":[115347],"is_not":false,"summary":null,"term":"FYPO:0007073"},{"annotations":[115341,115342,115348,115349],"is_not":false,"summary":null,"term":"FYPO:0007772"},{"annotations":[115352],"is_not":false,"summary":null,"term":"FYPO:0007770"},{"annotations":[115358],"is_not":false,"summary":null,"term":"FYPO:0003780"},{"annotations":[115346],"is_not":false,"summary":null,"term":"FYPO:0003657"},{"annotations":[115380,115381],"is_not":false,"summary":null,"term":"FYPO:0001234"}]},"doi":"10.1016/j.devcel.2020.01.028","gene_count":15,"genes_by_uniquename":{"SJAG_00684":null,"SJAG_01050":null,"SJAG_01242":null,"SJAG_01330":null,"SJAG_01601":null,"SJAG_01745":null,"SJAG_01777":null,"SJAG_03250":null,"SJAG_03299":null,"SJAG_03783":null,"SJAG_03892":null,"SJAG_04349":null,"SJAG_04489":null,"SJAG_04912":null,"SJAG_05207":null},"genotypes_by_uniquename":{"Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"Vps4-EQ(E233Q aa)","display_uniquename":"Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-2","expression":"Not assayed or wild type"}]}]},"cmp7delta":{"display_name":"cmp7delta","display_uniquename":"cmp7delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]}]},"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cmp7delta vps4-ts(I307T L327S aa)","display_uniquename":"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]},"did4delta":{"display_name":"did4delta","display_uniquename":"did4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04489:allele-1","expression":"Null"}]}]},"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]},"mad2delta":{"display_name":"mad2delta","display_uniquename":"mad2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01330:allele-1","expression":"Null"}]}]},"nur1delta":{"display_name":"nur1delta","display_uniquename":"nur1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]}]},"nur1delta__vps4delta":{"display_name":"nur1delta vps4delta","display_uniquename":"nur1delta__vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]},"sst4delta":{"display_name":"sst4delta","display_uniquename":"sst4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03250:allele-1","expression":"Null"}]}]},"vps24delta":{"display_name":"vps24delta","display_uniquename":"vps24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03783:allele-1","expression":"Null"}]}]},"vps25delta":{"display_name":"vps25delta","display_uniquename":"vps25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04912:allele-1","expression":"Null"}]}]},"vps28delta":{"display_name":"vps28delta","display_uniquename":"vps28delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04349:allele-1","expression":"Null"}]}]},"vps32delta":{"display_name":"vps32delta","display_uniquename":"vps32delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01242:allele-1","expression":"Null"}]}]},"vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"vps4-ts(I307T L327S aa)","display_uniquename":"vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]},"vps4delta":{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}},"ltp_gene_count":15,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[{"evidence":"Reconstituted Complex","gene_uniquename":"SJAG_01242","interactor_uniquename":"SJAG_03892","reference_uniquename":"PMID:32109380","throughput":"low"},{"evidence":"Reconstituted Complex","gene_uniquename":"SJAG_04489","interactor_uniquename":"SJAG_03892","reference_uniquename":"PMID:32109380","throughput":"low"},{"evidence":"Reconstituted Complex","gene_uniquename":"SJAG_05207","interactor_uniquename":"SJAG_01242","reference_uniquename":"PMID:32109380","throughput":"low"},{"evidence":"Reconstituted Complex","gene_uniquename":"SJAG_05207","interactor_uniquename":"SJAG_01745","reference_uniquename":"PMID:32109380","throughput":"low"},{"evidence":"Reconstituted Complex","gene_uniquename":"SJAG_05207","interactor_uniquename":"SJAG_03892","reference_uniquename":"PMID:32109380","throughput":"low"}],"publication_year":"2020","pubmed_entrez_date":"2020-02-29","pubmed_publication_date":"06 04 2020","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0001132":null,"FYPO:0001234":null,"FYPO:0001370":null,"FYPO:0001440":null,"FYPO:0003657":null,"FYPO:0003780":null,"FYPO:0004318":null,"FYPO:0004718":null,"FYPO:0007073":null,"FYPO:0007770":null,"FYPO:0007771":null,"FYPO:0007772":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"GO:0000093":null,"GO:0000776":null,"GO:0000781":null,"GO:0000792":null,"GO:0000815":null,"GO:0005643":null,"GO:0005771":null,"GO:0005783":null,"GO:0005816":null,"GO:0031965":null,"GO:0032585":null,"GO:0043515":null,"GO:1990343":null},"title":"ESCRT-III/Vps4 Controls Heterochromatin-Nuclear Envelope Attachments.","uniquename":"PMID:32109380"}


id: GO_REF:0000092
data:
  {"abstract":"We have created a standard template for classes describing the biosynthesis of a chemical entity from or via an other chemical entity as biological processes. The underlying equivalence axiom templates are \"GO:0009058 and 'has output' some T and 'has input' some F\" (biosynthesis from) and \"GO:0009058 and 'has output' some T and 'has intermediate' some I\" (biosynthesis via), where T,F, and I are chemical entities (CHEBI:24431). The approach to combine GO and ChEBI has been described in the following publication: PMID:23895341.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation for the biosynthesis from or via a chemical as biological process in the Gene Ontology","uniquename":"GO_REF:0000092"}


id: GO_REF:0000108
data:
  {"abstract":"GO terms are automatically assigned based on inter-ontology links to generate inferred annotations. Annotations from Molecular Function to Biological Process can be propagated, as well as between Biological Process and Cellular Component. Annotations that are created using this inference method receive either the evidence code ECO:0000366 (evidence based on logical inference from automatic annotation used in automatic assertion) or ECO:0000364 (evidence based on logical inference from manual annotation used in automatic assertion), depending on whether the source annotation has a manual or automatic evidence code. 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id: GO_REF:0000051
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id: PMID:23786411
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Furthermore, the defective semi-open mitosis observed in an apc2 mutant was restored by mutated oar2+. 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H","authors_abbrev":"Aoki K et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2022-11-21 18:57:14","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Sho Okamoto","canto_curator_role":"community","canto_first_approved_date":"2022-11-21 18:57:14","canto_session_key":"a0c3e1394f326db9","canto_session_submitted_date":"2022-11-21 18:57:00","canto_triage_status":"Curatable","citation":"Genes Cells 2013 Sep;18(9):733-52","cv_annotations":{"cellular_component":[{"annotations":[115278],"is_not":false,"summary":null,"term":"GO:0005730"}],"multi_locus_phenotype":[{"annotations":[115292,115293,115294,115296],"is_not":false,"summary":null,"term":"FYPO:0000674"}],"single_locus_phenotype":[{"annotations":[115279,115280,115281,115295],"is_not":false,"summary":null,"term":"FYPO:0000080"},{"annotations":[115288,115289,115290],"is_not":false,"summary":null,"term":"FYPO:0000618"},{"annotations":[115297,115298,115299],"is_not":false,"summary":null,"term":"FYPO:0001327"},{"annotations":[115285,115286,115287],"is_not":false,"summary":null,"term":"FYPO:0001387"},{"annotations":[115282,115283,115284],"is_not":false,"summary":null,"term":"FYPO:0000324"},{"annotations":[115291],"is_not":false,"summary":null,"term":"FYPO:0004683"}]},"doi":"10.1111/gtc.12072","gene_count":6,"genes_by_uniquename":{"SJAG_00259":null,"SJAG_01946":null,"SJAG_01956":null,"SJAG_03198":null,"SJAG_03351":null,"SJAG_03575":null},"genotypes_by_uniquename":{"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__cem1delta":{"display_name":"apc2-361(E548K ts) cem1delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]},"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts) oar2-51(Y189D cold sensitive)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Not assayed or wild type"}]}]},"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression":{"display_name":"apc2-361(E548K ts) oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]},"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2delta":{"display_name":"apc2-361(E548K ts) oar2delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]},"cem1delta":{"display_name":"cem1delta","display_uniquename":"cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]},"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]},"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]},"oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression":{"display_name":"oar2-51(Y189D cold sensitive)[Overexpression]","display_uniquename":"oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Overexpression"}]}]},"oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression":{"display_name":"oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]},"oar2delta":{"display_name":"oar2delta","display_uniquename":"oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]}},"ltp_gene_count":6,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2013","pubmed_entrez_date":"2013-06-22","pubmed_publication_date":"Sep 2013","references_by_uniquename":{"PMID:23786411":null},"terms_by_termid":{"FYECO:0000004":null,"FYECO:0000006":null,"FYECO:0000137":null,"FYPO:0000080":null,"FYPO:0000324":null,"FYPO:0000618":null,"FYPO:0000674":null,"FYPO:0001327":null,"FYPO:0001387":null,"FYPO:0004683":null,"FYPO_EXT:0000001":null,"GO:0005730":null},"title":"Regulation of nuclear envelope dynamics via APC/C is necessary for the progression of semi-open mitosis in Schizosaccharomyces japonicus.","uniquename":"PMID:23786411"}


id: PMID:37279666
data:
  {"abstract":"A new study finds that Schizosaccharomyces japonicus, a eukaryote that lost the ability to respire, modified its central carbon metabolism to maintain efficient ATP production, cofactor regeneration, and amino-acid production. This remarkable metabolic flexibility opens new avenues towards applications.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Cool L, Hanon S, Verstrepen KJ","authors_abbrev":"Cool L et al.","canto_added_date":"2023-06-08 00:40:04","canto_curator_role":"JaponicusDB","canto_triage_status":"Review or comment","citation":"Curr Biol 2023 Jun 05;33(11):R444-R447","cv_annotations":{},"doi":"10.1016/j.cub.2023.05.002","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2023","pubmed_entrez_date":"2023-06-06","pubmed_publication_date":"05 Jun 2023","terms_by_termid":{},"title":"Metabolism: How a eukaryote adapted to life without respiration.","uniquename":"PMID:37279666"}


id: GO_REF:0000115
data:
  {"abstract":"Rfam (http://rfam.org, PMID:29112718) is a database of non-coding RNA families which are manually","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"RNAcentral (1). (1) European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridgeshire, United Kingdom","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Automatic Gene Ontology annotation of non-coding RNA sequences through association of Rfam records with GO terms","uniquename":"GO_REF:0000115"}


id: PMID:25361970
data:
  {"abstract":"PomBase (http://www.pombase.org) is the model organism database for the fission yeast Schizosaccharomyces pombe. PomBase provides a central hub for the fission yeast community, supporting both exploratory and hypothesis-driven research. It provides users easy access to data ranging from the sequence level, to molecular and phenotypic annotations, through to the display of genome-wide high-throughput studies. Recent improvements to the site extend annotation specificity, improve usability and allow for monthly data updates. Both in-house curators and community researchers provide manually curated data to PomBase. The genome browser provides access to published high-throughput data sets and the genomes of three additional Schizosaccharomyces species (Schizosaccharomyces cryophilus, Schizosaccharomyces japonicus and Schizosaccharomyces octosporus). ","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"McDowall MD, Harris MA, Lock A, Rutherford K, Staines DM, Bähler J, Kersey PJ, Oliver SG, Wood V","authors_abbrev":"McDowall MD et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Database","citation":"Nucleic Acids Res 2015 Jan;43(Database issue):D656-61","cv_annotations":{},"doi":"10.1093/nar/gku1040","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2015","pubmed_entrez_date":"2014-11-02","pubmed_publication_date":"Jan 2015","terms_by_termid":{},"title":"PomBase 2015: updates to the fission yeast database.","uniquename":"PMID:25361970"}


id: PMID:33837814
data:
  {"abstract":"The capability of RNA isolation with good efficiency and high quality is essential for a downstream application such as RNA sequencing. It requires successful cell culturing and an effective RNA isolation method. Although effective methods are available, production of the homogenous mycelia and extraction of good-quality mycelial RNA from true invasive hyphae, which penetrated into the agar plates, are difficult. To overcome these problems, the aim of this study was to develop technical modifications which allow production of homogenous mycelial biomass without extra stimuli agents and improve quality of the RNA extracted from the fungal hyphae. Our alternative culture medium was suitable for production both yeast-phase cells and hyphae of the Schizosaccharomyces japonicus and other dimorphic species, such as the Candida albicans, Saccharomyces cerevisiae, and Jaminaea angkorensis. To improve quality of the mycelial RNA, we developed an isolation procedure of the hyphal tip, which eliminated the unnecessary vacuoles-containing parts of the hyphae. To increase RNA quantity, we used glass beads in the RNA extraction protocol to achieve stronger breaking of the mycelial walls. All these modifications can also be useful for researchers working with other dimorphic fungi and can contribute to the higher comparability of the transcriptional data coming from yeast-phase cells and hyphae or even from different species.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Papp LA, Ács-Szabó L, Póliska S, Miklós I","authors_abbrev":"Papp LA et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Method or reagent","citation":"Curr Genet 2021 Oct;67(5):823-830","cv_annotations":{},"doi":"10.1007/s00294-021-01181-4","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2021","pubmed_entrez_date":"2021-04-10","pubmed_publication_date":"Oct 2021","terms_by_termid":{},"title":"A modified culture medium and hyphae isolation method can increase quality of the RNA extracted from mycelia of a dimorphic fungal species.","uniquename":"PMID:33837814"}


id: PMID:28733403
data:
  {"abstract":"This protocol describes the use of electroporation to transform  Schizosaccharomyces japonicus  with plasmids or linear DNA. Plasmids are helpful for the complementation testing of mutations and for the expression of specific genes. Linear DNA fragments integrated into chromosomal DNA by homologous recombination are useful for gene deletion or to fuse a gene with a tag sequence (e.g., encoding a fluorescent protein). To introduce DNA into  S. japonicus , electroporation methods are recommended because  S. japonicus  is sensitive to lithium acetate (LiOAc).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Aoki K, Niki H","authors_abbrev":"Aoki K et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Method or reagent","citation":"Cold Spring Harb Protoc 2017 Dec 01;2017(12):pdb.prot091850","cv_annotations":{},"doi":"10.1101/pdb.prot091850","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2017","pubmed_entrez_date":"2017-07-23","pubmed_publication_date":"01 Dec 2017","terms_by_termid":{},"title":"Transformation of  Schizosaccharomyces japonicus .","uniquename":"PMID:28733403"}


id: PMID:5315726
data:
  {"abstract":"","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Bulder CJ","authors_abbrev":"Bulder CJ","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"Antonie Van Leeuwenhoek 1971;37(3):353-8","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"1971","pubmed_entrez_date":"1971-01-01","pubmed_publication_date":"1971","terms_by_termid":{},"title":"Anaerobic growth, ergosterol content and sensitivity to a polyene antibiotic, of the yeast Schizosaccharomyces japonicus.","uniquename":"PMID:5315726"}


id: GO_REF:0000078
data:
  {"abstract":"We have created a standard template for classes describing the transport or vesicle-mediated transport of a chemical entity (ChEBI) from and/or to a cellular component as a biological process. The underlying equivalence axiom templates are \"GO:0006810 and 'transports or maintains localization of' some X [ and 'has_target_start_location' some F] [ and 'has_target_end_location' some T]\" (transport) and \"GO:0016192 and 'transports or maintains localization of' some X [ and 'has_target_start_location' some F] [ and 'has_target_end_location' some T]\" (vesicle-mediated transport), where F and T are cellular components and X is a chemical entity (CHEBI:24431). The approach to combine GO and ChEBI has been described in the following publication: PMID:23895341.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation for the transport or vesicle-mediated transport of a chemical from and/or to a cell component as biological process in the Gene Ontology","uniquename":"GO_REF:0000078"}


id: PMID:33022982
data:
  {"abstract":"Nowadays commercial preparations of yeast polysaccharides (PSs), in particular mannoproteins, are widely used for wine colloidal and tartrate salt stabilization. In this context, the industry has developed different processes for the isolation and purification of PSs from the cell wall of  Saccharomyces cerevisiae . This yeast releases limited amounts of mannoproteins in the growth medium, thus making their direct isolation from the culture broth not economically feasible. On the contrary,  Schizosaccharomyces japonicus , a non- Saccharomyces  yeast isolated from wine, releases significant amounts of PSs during the alcoholic fermentation. In the present work, PSs released by  Sch. japonicus  were recovered from the growth medium by ultrafiltration and their impact on the wine colloidal stability was evaluated. Interestingly, these PSs contribute positively to the wine protein stability. The visible haziness of the heat-treated wine decreases as the concentration of added PSs increases. SDS-PAGE Gel electrophoresis results of the haze and of the supernatant after the heat stability test are consistent with the turbidity measurements. Moreover, particle size distributions of the heat-treated wines, as obtained by Dynamic Light Scattering (DLS), show a reduction in the average dimension of the protein aggregates as the concentration of added PSs increases.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Millarini V, Ignesti S, Cappelli S, Ferraro G, Adessi A, Zanoni B, Fratini E, Domizio P","authors_abbrev":"Millarini V et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Biotech","citation":"Foods 2020 Oct 03;9(10)","cv_annotations":{},"doi":"10.3390/foods9101407","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2020","pubmed_entrez_date":"2020-10-07","pubmed_publication_date":"03 Oct 2020","terms_by_termid":{},"title":"Protection of Wine from Protein Haze Using  Schizosaccharomyces japonicus  Polysaccharides.","uniquename":"PMID:33022982"}


id: GO_REF:0000104
data:
  {"abstract":"GO terms are manually assigned to each rule in UniRule. These rules are prepared manually by UniProt curators based on the annotations present in reviewed UniProtKB/Swiss-Prot records that share sequence features, sequence similarity and taxonomy. The assigned GO terms are then transferred to all unreviewed UniProtKB/TrEMBL proteins that meet the conditions given in the UniRule rule. GO annotations using this technique receive the evidence code Inferred from Electronic Annotation (IEA; ECO:0000501). These annotations are updated regularly by UniProt and are available for download on both the GO and GOA EBI ftp sites. To report an annotation error or inconsistency, or for further information, please contact the UniProt Automated Annotation team at automated_annotation@ebi.ac.uk. UniRule is a collaboration between the European Bioinformatics Institute (EMBL-EBI), the Swiss Institute of Bioinformatics (SIB), and the Protein Information Resource at Georgetown University (PIR). For further information, please see UniProt: a hub for protein information Nucleic Acids Res. 2015, 43, D204, doi: 10.1093/nar/gku989 or www.uniprot.org.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"UniProt 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Gene Ontology annotations created by transferring manual GO annotations between related proteins based on shared sequence features.","uniquename":"GO_REF:0000104"}


id: GO_REF:0000074
data:
  {"abstract":"We have created a standard template for classes describing the export of a chemical entity (ChEBI) as a biological process. The underlying equivalence axiom template is \"GO:0006810 and 'exports' some X\", where X is a chemical entity (CHEBI:24431). The approach to combine GO and ChEBI has been described in the following publication: PMID:23895341.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of export of a chemical as biological process in the Gene Ontology","uniquename":"GO_REF:0000074"}


id: PMID:30664646
data:
  {"abstract":"Cells of a specific cell type may divide within a certain size range. Yet, functionally optimal cellular organization is typically maintained across different cell sizes, a phenomenon known as scaling. The mechanisms underlying scaling and its physiological significance remain elusive. Here we approach this problem by interfering with scaling in the rod-shaped fission yeast Schizosaccharomyces japonicus that relies on cellular geometry cues to position the division site. We show that S. japonicus uses the Cdc42 polarity module to adjust its geometry to changes in the cell size. When scaling is prevented resulting in abnormal cellular length-to-width aspect ratio, cells exhibit severe division site placement defects. We further show that despite the generally accepted view, a similar scaling phenomenon can occur in the sister species, Schizosaccharomyces pombe. Our results demonstrate that scaling is required for normal cell function and delineate possible rules for cellular geometry maintenance in populations of proliferating cells.","alleles_by_uniquename":{"SJAG_00028:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00028","name":"rga6delta","uniquename":"SJAG_00028:allele-1"},"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"},"SJAG_03048:allele-1":{"allele_type":"amino_acid_mutation","description":"G146D","gene_uniquename":"SJAG_03048","name":"cdc2-1w","uniquename":"SJAG_03048:allele-1"},"SJAG_03581:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03581","name":"gef1delta","uniquename":"SJAG_03581:allele-1"},"SJAG_04280:allele-1":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-1"},"SJAG_04280:allele-2":{"allele_type":"amino_acid_mutation","description":"G788E","gene_uniquename":"SJAG_04280","name":"wee1-G788E","uniquename":"SJAG_04280:allele-2"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"}},"annotation_curators":[{"annotation_count":3,"community_curator":false,"file_name":null,"file_type":null,"name":"Val 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21;10(1):268","cv_annotations":{"biological_process":[{"annotations":[115275],"is_not":false,"summary":null,"term":"GO:0061171"},{"annotations":[115276,115277],"is_not":false,"summary":null,"term":"GO:0008360"}],"multi_locus_phenotype":[{"annotations":[115263,115268],"is_not":false,"summary":null,"term":"FYPO:0007783"},{"annotations":[115274],"is_not":false,"summary":null,"term":"FYPO:0004105"},{"annotations":[115265],"is_not":false,"summary":null,"term":"FYPO:0001369"},{"annotations":[115267],"is_not":false,"summary":null,"term":"FYPO:0004293"}],"single_locus_phenotype":[{"annotations":[115269],"is_not":false,"summary":null,"term":"FYPO:0000198"},{"annotations":[115270,115271,115273],"is_not":false,"summary":null,"term":"FYPO:0005503"},{"annotations":[115264],"is_not":false,"summary":null,"term":"FYPO:0007783"},{"annotations":[115258],"is_not":false,"summary":null,"term":"FYPO:0004105"},{"annotations":[115272],"is_not":false,"summary":null,"term":"FYPO:0002870"},{"annotations":[115266],"is_not":false,"summary":null,"term":"FYPO:0001369"},{"annotations":[115259],"is_not":false,"summary":null,"term":"FYPO:0001234"},{"annotations":[115253,115254,115257],"is_not":false,"summary":null,"term":"FYPO:0000648"},{"annotations":[115255,115256,115262],"is_not":false,"summary":null,"term":"FYPO:0001877"},{"annotations":[115260,115261],"is_not":false,"summary":null,"term":"FYPO:0006616"}]},"doi":"10.1038/s41467-018-08218-2","gene_count":8,"genes_by_uniquename":{"SJAG_00028":null,"SJAG_00030":null,"SJAG_00514":null,"SJAG_01794":null,"SJAG_03048":null,"SJAG_03581":null,"SJAG_04280":null,"SJAG_04522":null},"genotypes_by_uniquename":{"cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc2-1w(G146D 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type"}]}]}},"ltp_gene_count":6,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2019","pubmed_entrez_date":"2019-01-22","pubmed_publication_date":"21 01 2019","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000103":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000338":null,"FYPO:0000198":null,"FYPO:0000648":null,"FYPO:0001234":null,"FYPO:0001369":null,"FYPO:0001877":null,"FYPO:0002870":null,"FYPO:0004105":null,"FYPO:0004293":null,"FYPO:0005503":null,"FYPO:0006616":null,"FYPO:0007783":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"GO:0008360":null,"GO:0061171":null},"title":"Cellular geometry scaling ensures robust division site positioning.","uniquename":"PMID:30664646"}


id: PMID:7612397
data:
  {"abstract":"The ultrastructure of isolated cell walls of Schizosaccharomyces pombe was studied by electron microscopy after treatment with the following purified enzymes: endo-beta-(1-->3)-glucanase, endo-beta-(-->6)-glucanase, and endo-alpha-(1-->3)-glucanase produced by Bacillus circulans; exo-beta-(1-->3)-glucanase and endo-beta-(1-->3)-glucanase produced by Schizosaccharomyces japonicus var. versatilis. The exo-beta-(1-->3)-glucanase had no detectable effect on the walls, but amorphous wall material was removed by action of the endo-beta-(1-->3)- and endo-beta-(1-->6)-glucanases of B. circulans to reveal a wall component consisting of densely interwoven microfibrils. The fibrils were hydrolyzed by treatment with the Schiz. japonicus endo-beta-(1-->3)-glucanase followed by B. circulans endo-alpha-(1-->3)-glucanase--suggesting that they were composed of -beta-(1-->3)-linked glucan and alpha-(1-->3)-linked glucan. The presence of a fibrillar component in untreated walls was evident after negative staining.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Kopecká M, Fleet GH, Phaff HJ","authors_abbrev":"Kopecká M et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"J Struct Biol 1995 Mar;114(2):140-52","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"1995","pubmed_entrez_date":"1995-03-01","pubmed_publication_date":"Mar 1995","terms_by_termid":{},"title":"Ultrastructure of the cell wall of Schizosaccharomyces pombe following treatment with various glucanases.","uniquename":"PMID:7612397"}


id: PMID:37164017
data:
  {"abstract":"Most eukaryotes respire oxygen, using it to generate biomass and energy. However, a few organisms have lost the capacity to respire. Understanding how they manage biomass and energy production may illuminate the critical points at which respiration feeds into central carbon metabolism and explain possible routes to its optimization. Here, we use two related fission yeasts, Schizosaccharomyces pombe and Schizosaccharomyces japonicus, as a comparative model system. We show that although S. japonicus does not respire oxygen, unlike S. pombe, it is capable of efficient NADH oxidation, amino acid synthesis, and ATP generation. We probe possible optimization strategies through the use of stable isotope tracing metabolomics, mass isotopologue distribution analysis, genetics, and physiological experiments. S. japonicus appears to have optimized cytosolic NADH oxidation via glycerol-3-phosphate synthesis. It runs a fully bifurcated TCA pathway, sustaining amino acid production. Finally, we propose that it has optimized glycolysis to maintain high ATP/ADP ratio, in part by using the pentose phosphate pathway as a glycolytic shunt, reducing allosteric inhibition of glycolysis and supporting biomass generation. By comparing two related organisms with vastly different metabolic strategies, our work highlights the versatility and plasticity of central carbon metabolism in eukaryotes, illuminating critical adaptations supporting the preferential use of glycolysis over oxidative phosphorylation.","alleles_by_uniquename":{"SJAG_00409:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00409","name":"gpd1delta","uniquename":"SJAG_00409:allele-1"},"SJAG_00601:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00601","name":"rip1delta","uniquename":"SJAG_00601:allele-1"},"SJAG_01355:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01355","name":"cox6delta","uniquename":"SJAG_01355:allele-1"},"SJAG_01753:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01753","name":"mdh1delta","uniquename":"SJAG_01753:allele-1"},"SJAG_02796:allele-1":{"allele_type":"amino_acid_mutation","description":"A343T","gene_uniquename":"SJAG_02796","name":"pyk1-A343T","uniquename":"SJAG_02796:allele-1"},"SJAG_03920:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03920","name":"sdh3delta","uniquename":"SJAG_03920:allele-1"},"SJAG_04843:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04843","name":"fum1delta","uniquename":"SJAG_04843:allele-1"}},"annotation_curators":[{"annotation_count":20,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2023-05-18","authors":"Alam S, Gu Y, Reichert P, Bähler J, Oliferenko S","authors_abbrev":"Alam S et al.","canto_added_date":"2023-05-12 00:40:04","canto_annotation_status":"APPROVED","canto_approved_date":"2023-05-18 12:11:55","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2023-05-18 12:11:54","canto_session_key":"94bcbfb72cf94809","canto_session_submitted_date":"2023-05-18 12:11:43","canto_triage_status":"Curatable","citation":"Curr Biol 2023 Apr 30;","cv_annotations":{"single_locus_phenotype":[{"annotations":[115621],"is_not":false,"summary":null,"term":"FYPO:0007363"},{"annotations":[115619],"is_not":false,"summary":null,"term":"FYPO:0000026"},{"annotations":[115618],"is_not":false,"summary":null,"term":"FYPO:0001355"},{"annotations":[115620],"is_not":false,"summary":null,"term":"FYPO:0001489"},{"annotations":[115622],"is_not":false,"summary":null,"term":"FYPO:0004165"},{"annotations":[115616,115617],"is_not":false,"summary":null,"term":"FYPO:0007790"},{"annotations":[115610,115613],"is_not":false,"summary":null,"term":"FYPO:0000760"},{"annotations":[115612,115615],"is_not":false,"summary":null,"term":"FYPO:0000579"},{"annotations":[115611,115614],"is_not":false,"summary":null,"term":"FYPO:0000590"},{"annotations":[115607,115608,115609],"is_not":false,"summary":null,"term":"FYPO:0001357"},{"annotations":[115606],"is_not":false,"summary":null,"term":"FYPO:0001234"},{"annotations":[115623,115624,115625],"is_not":false,"summary":null,"term":"FYPO:0002058"}]},"doi":"10.1016/j.cub.2023.04.046","gene_count":7,"genes_by_uniquename":{"SJAG_00409":null,"SJAG_00601":null,"SJAG_01355":null,"SJAG_01753":null,"SJAG_02796":null,"SJAG_03920":null,"SJAG_04843":null},"genotypes_by_uniquename":{"cox6delta":{"display_name":"cox6delta","display_uniquename":"cox6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01355:allele-1","expression":"Null"}]}]},"fum1delta":{"display_name":"fum1delta","display_uniquename":"fum1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04843:allele-1","expression":"Null"}]}]},"gpd1delta":{"display_name":"gpd1delta","display_uniquename":"gpd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00409:allele-1","expression":"Null"}]}]},"mdh1delta":{"display_name":"mdh1delta","display_uniquename":"mdh1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01753:allele-1","expression":"Null"}]}]},"pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pyk1-A343T(aa)","display_uniquename":"pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02796:allele-1","expression":"Not assayed or wild type"}]}]},"rip1delta":{"display_name":"rip1delta","display_uniquename":"rip1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00601:allele-1","expression":"Null"}]}]},"sdh3delta":{"display_name":"sdh3delta","display_uniquename":"sdh3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03920:allele-1","expression":"Null"}]}]}},"ltp_gene_count":7,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2023","pubmed_entrez_date":"2023-05-10","pubmed_publication_date":"30 Apr 2023","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000015":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYPO:0000026":null,"FYPO:0000579":null,"FYPO:0000590":null,"FYPO:0000760":null,"FYPO:0001234":null,"FYPO:0001355":null,"FYPO:0001357":null,"FYPO:0001489":null,"FYPO:0002058":null,"FYPO:0004165":null,"FYPO:0007363":null,"FYPO:0007790":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"FYPO_EXT:0000003":null},"title":"Optimization of energy production and central carbon metabolism in a non-respiring eukaryote.","uniquename":"PMID:37164017"}


id: PMID:32243490
data:
  {"abstract":"The nuclear envelope (NE) undergoes dynamic remodeling to maintain NE integrity, a process involving the inner nuclear membrane protein LEM2 recruiting CHMP7/Cmp7 and then ESCRT-III. However, prior work has hinted at CHMP7/ESCRT-independent mechanisms. To identify such mechanisms, we studied NE assembly in Schizosaccharomyces japonicus, a fission yeast that undergoes partial mitotic NE breakdown and reassembly. S. japonicus cells lacking Cmp7 have compromised NE sealing after mitosis but are viable. A genetic screen identified mutations that promote NE integrity in cmp7Δ cells. Unexpectedly, loss of Lem2 or its interacting partner Nur1 suppressed cmp7Δ defects. In the absence of Cmp7, Lem2 formed aggregates that appear to interfere with ESCRT-independent NE sealing. A gain-of-function mutation implicated a membrane and ESCRT-III regulator, Alx1, in this alternate pathway. Additional results suggest a potentially general role for unsaturated fatty acids in NE integrity. These findings establish the existence of mechanisms for NE sealing independent of the canonical ESCRT pathway.","alleles_by_uniquename":{"SJAG_01242:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01242","name":"vps32delta","uniquename":"SJAG_01242:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_03891:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03891","name":"alx1delta","uniquename":"SJAG_03891:allele-1"},"SJAG_05207:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05207","name":"cmp7delta","uniquename":"SJAG_05207:allele-1"}},"annotation_curators":[{"annotation_count":21,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"},{"annotation_count":4,"community_curator":false,"file_name":null,"file_type":null,"name":"Val Wood","orcid":"0000-0001-6330-7526"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-07-09","authors":"Lee IJ, Stokasimov E, Dempsey N, Varberg JM, Jacob E, Jaspersen SL, Pellman D","authors_abbrev":"Lee IJ et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2021-07-14 11:10:55","canto_approver_orcid":"0000-0001-6330-7526","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-07-09 15:55:25","canto_session_key":"e134ba05c345c3f5","canto_session_submitted_date":"2021-07-09 15:55:19","canto_triage_status":"Curatable","citation":"J Cell Biol 2020 06 01;219(6)","cv_annotations":{"biological_process":[{"annotations":[115649,115650,115651,115652],"is_not":false,"summary":null,"term":"GO:0007084"}],"cellular_component":[{"annotations":[115648],"is_not":false,"summary":null,"term":"GO:0005783"},{"annotations":[115634,115636,115646],"is_not":false,"summary":null,"term":"GO:0044732"},{"annotations":[115635,115637,115645],"is_not":false,"summary":null,"term":"GO:0005635"}],"single_locus_phenotype":[{"annotations":[115638],"is_not":false,"summary":null,"term":"FYPO:0001375"},{"annotations":[115643],"is_not":false,"summary":null,"term":"FYPO:0000080"},{"annotations":[115639,115640,115647],"is_not":false,"summary":null,"term":"FYPO:0007772"},{"annotations":[115644],"is_not":false,"summary":null,"term":"FYPO:0000714"},{"annotations":[115641,115642],"is_not":false,"summary":null,"term":"FYPO:0001234"}]},"doi":"10.1083/jcb.201908232","gene_count":6,"genes_by_uniquename":{"SJAG_01050":null,"SJAG_01242":null,"SJAG_01745":null,"SJAG_03891":null,"SJAG_03943":null,"SJAG_05207":null},"genetic_interactions":[[{"gene_a_uniquename":"SJAG_01745","gene_b_uniquename":"SJAG_01050","interaction_type":"Phenotypic Suppression"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]],[{"gene_a_uniquename":"SJAG_01242","gene_b_uniquename":"SJAG_01050","interaction_type":"Phenotypic Suppression"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]],[{"gene_a_uniquename":"SJAG_01242","gene_b_uniquename":"SJAG_01745","interaction_type":"Phenotypic Suppression"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]],[{"gene_a_uniquename":"SJAG_05207","gene_b_uniquename":"SJAG_01745","interaction_type":"Phenotypic Suppression"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]],[{"gene_a_uniquename":"SJAG_01242","gene_b_uniquename":"SJAG_03891","interaction_type":"Phenotypic Enhancement"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]],[{"gene_a_uniquename":"SJAG_05207","gene_b_uniquename":"SJAG_03943","interaction_type":"Dosage Rescue"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]]],"genotypes_by_uniquename":{"alx1delta":{"display_name":"alx1delta","display_uniquename":"alx1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03891:allele-1","expression":"Null"}]}]},"cmp7delta":{"display_name":"cmp7delta","display_uniquename":"cmp7delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]}]},"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]},"vps32delta":{"display_name":"vps32delta","display_uniquename":"vps32delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01242:allele-1","expression":"Null"}]}]}},"ltp_gene_count":6,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2020","pubmed_entrez_date":"2020-04-04","pubmed_publication_date":"01 06 2020","terms_by_termid":{"FYECO:0000006":null,"FYPO:0000080":null,"FYPO:0000714":null,"FYPO:0001234":null,"FYPO:0001375":null,"FYPO:0007772":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000003":null,"GO:0005635":null,"GO:0005783":null,"GO:0007084":null,"GO:0044732":null},"title":"Factors promoting nuclear envelope assembly independent of the canonical ESCRT pathway.","uniquename":"PMID:32243490"}


id: GO_REF:0000064
data:
  {"abstract":"We have created a standard template for classes describing cell components as part of other cell components. The underlying equivalence axiom template is \"P and 'part_of' some W\", where P and W are cell components.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of cell components as part of other cell components in the Gene Ontology","uniquename":"GO_REF:0000064"}


id: GO_REF:0000070
data:
  {"abstract":"We have created a standard template for classes describing the transmembrane transporter activity a chemical entity (ChEBI) as molecular function. This includes variants for secondary active transmembrane transporter activity (GO:0015291), uptake transmembrane transporter activity (GO:0015563), and ATPase activity, coupled to transmembrane movement of substances (GO:0042626). The underlying equivalence axiom template is \"G and 'transports or maintains localization of' some X\",  where the genus G is either GO:0022857 (transmembrane transporter activity), GO:0015291, GO:0015563, or GO:0042626 depending on the variant. The variable X is a chemical entity (CHEBI:24431). The approach to combine GO and ChEBI has been described in the following publication: PMID:23895341.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of transmembrane transporter activity as molecular function in the Gene Ontology","uniquename":"GO_REF:0000070"}


id: PMID:32265131
data:
  {"abstract":"The N- and O-linked oligosaccharides from fission yeast Schizosaccharomyces pombe not only contain large amounts of d-mannose (Man) but also contain large amounts of d-galactose (Gal). Although the galactomannans of S. pombe are mainly composed of α1,2- or α1,3-linked Gals, some of the terminal α1,2-linked Gals are found to be linked to pyruvylated β1,3-linked galactose (PvGal). We have determined the structural characteristics of the N-glycans and O-glycans in three Schizosaccharomyces species (S. japonicus, S. octosporus, and S. cryophilus) using lectin blot,  1 H NMR spectroscopy, and size-fractionation high performance liquid chromatography (HPLC), and found that the galactosylation of oligosaccharides was a common feature in fission yeasts. In addition, each of the terminal Galα1,2-, Galβ1,3- and non-substituted Man residues exhibited distinct characteristics. A BLAST search of gene databases in Schizosaccharomyces identified genes homologous to pvg1 encoding pyruvyltransferase of S. pombe. These genes, when expressed in an S. pombe pvg1Δ strains, led to the pyruvylation of non-reducing terminal β-linked Gal, suggesting the biosynthetic pathway of PvGal-containing oligosaccharides is highly conserved in fission yeasts.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Fukunaga T, Tanaka N, Furumoto T, Nakakita S, Ohashi T, Higuchi Y, Maekawa H, Takegawa K","authors_abbrev":"Fukunaga T et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"J Biosci Bioeng 2020 Aug;130(2):128-136","cv_annotations":{},"doi":"10.1016/j.jbiosc.2020.03.008","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2020","pubmed_entrez_date":"2020-04-09","pubmed_publication_date":"Aug 2020","terms_by_termid":{},"title":"Characterization of N- and O-linked galactosylated oligosaccharides from fission yeast species.","uniquename":"PMID:32265131"}


id: PMID:23873862
data:
  {"abstract":"Many fungi respond to light and regulate fungal development and behavior. A blue light-activated complex has been identified in Neurospora crassa as the product of the wc-1 and wc-2 genes. Orthologs of WC-1 and WC-2 have hitherto been found only in filamentous fungi and not in yeast, with the exception of the basidiomycete pathogenic yeast Cryptococcus. Here, we report that the fission yeast Schizosaccharomyces japonicus responds to blue light depending on Wcs1 and Wcs2, orthologs of components of the WC complex. Surprisingly, those of ascomycete S. japonicus are more closely related to those of the basidiomycete. S. japonicus reversibly changes from yeast to hyphae in response to environmental stresses. After incubation at 30°C, a colony of yeast was formed, and then hyphal cells extended from the periphery of the colony. When light cycles were applied, distinct dark- and bright-colored hyphal cell stripes were formed because the growing hyphal cells had synchronously activated cytokinesis. In addition, temperature cycles of 30°C for 12 h and 35°C for 12 h or of 25°C for 12 h and 30°C for 12 h during incubation in the dark induced a response in the hyphal cells similar to that of light. The stripe formation of the temperature cycles was independent of the wcs genes. Both light and temperature, which are daily external cues, have the same effect on growing hyphal cells. A dual sensing mechanism of external cues allows organisms to adapt to daily changes of environmental alteration. ","alleles_by_uniquename":{"SJAG_02860:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02860","name":"wcs1delta","uniquename":"SJAG_02860:allele-1"},"SJAG_05242:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05242","name":"wcs2delta","uniquename":"SJAG_05242:allele-1"}},"annotation_curators":[{"annotation_count":7,"community_curator":true,"file_name":null,"file_type":null,"name":"Sho Okamoto","orcid":null}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2022-12-01","authors":"Okamoto S, Furuya K, Nozaki S, Aoki K, Niki H","authors_abbrev":"Okamoto S et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2022-12-01 10:29:08","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Sho Okamoto","canto_curator_role":"community","canto_first_approved_date":"2022-12-01 10:29:08","canto_session_key":"0e71b7054e7d7754","canto_session_submitted_date":"2022-12-01 10:28:58","canto_triage_status":"Curatable","citation":"Eukaryot Cell 2013 Sep;12(9):1235-43","cv_annotations":{"biological_process":[{"annotations":[115534,115535],"is_not":false,"summary":null,"term":"GO:0071483"}],"molecular_function":[{"annotations":[115533],"is_not":false,"summary":null,"term":"GO:0009882"}],"single_locus_phenotype":[{"annotations":[115536,115537],"is_not":false,"summary":null,"term":"FYPO:0008031"},{"annotations":[115538,115539],"is_not":false,"summary":null,"term":"FYPO:0008046"}]},"doi":"10.1128/EC.00109-13","gene_count":2,"genes_by_uniquename":{"SJAG_02860":null,"SJAG_05242":null},"genotypes_by_uniquename":{"wcs1delta":{"display_name":"wcs1delta","display_uniquename":"wcs1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02860:allele-1","expression":"Null"}]}]},"wcs2delta":{"display_name":"wcs2delta","display_uniquename":"wcs2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05242:allele-1","expression":"Null"}]}]}},"ltp_gene_count":2,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2013","pubmed_entrez_date":"2013-07-23","pubmed_publication_date":"Sep 2013","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000126":null,"FYPO:0008031":null,"FYPO:0008046":null,"FYPO_EXT:0000001":null,"GO:0009882":null,"GO:0071483":null},"title":"Synchronous activation of cell division by light or temperature stimuli in the dimorphic yeast Schizosaccharomyces japonicus.","uniquename":"PMID:23873862"}


id: GO_REF:0000081
data:
  {"abstract":"We have created a standard template for classes describing the formation of a plant structure as a biological process. The underlying equivalence axiom template is \"'anatomical structure formation involved in morphogenesis' and 'results in formation of' some P\", where P is a plant anatomical entity (PO:0025131).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of plant formation as biological process in the Gene Ontology","uniquename":"GO_REF:0000081"}


id: PMID:35359202
data:
  {"abstract":"The fission yeast genus Schizosaccharomyces contains important model organisms for biological research. In particular, S. pombe is a widely used model eukaryote. So far little is known about the natural and artificial habitats of species in this genus. Finding out where S. pombe and other fission yeast species occur and how they live in their habitats can promote better understanding of their biology. Here we investigate in which substrates S. pombe, S. octosporus, S. osmophilus and S. japonicus are present. To this end about 2100 samples consisting of soil, tree sap fluxes, fresh fruit, dried fruit, honey, cacao beans, molasses and other substrates were analyzed. Effective isolation methods that allow efficient isolation of the above mentioned species were developed. Based on the frequency of isolating different fission yeast species in various substrates and on extensive literature survey, conclusions are drawn on their ecology. The results suggest that the primary habitat of S. pombe and S. octosporus is honeybee honey. Both species were also frequently detected on certain dried fruit like raisins, mango or pineapple to which they could be brought by the honey bees during ripening or during drying. While S. pombe was regularly isolated from grape mash and from fermented raw cacao beans S. octosporus was never isolated from fresh fruit. The main habitat of S. osmophilus seems to be solitary bee beebread. It was rarely isolated from raisins. S. japonicus was mainly found in forest substrates although it occurs on fruit and in fruit fermentations, too.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Brysch-Herzberg M, Jia GS, Seidel M, Assali I, Du LL","authors_abbrev":"Brysch-Herzberg M et al.","canto_added_date":"2023-05-04 00:40:04","canto_curator_role":"JaponicusDB","canto_triage_status":"Phylogeny and evolutionary studies","citation":"Antonie Van Leeuwenhoek 2022 May;115(5):661-695","cv_annotations":{},"doi":"10.1007/s10482-022-01720-0","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2022","pubmed_entrez_date":"2022-04-01","pubmed_publication_date":"May 2022","terms_by_termid":{},"title":"Insights into the ecology of Schizosaccharomyces species in natural and artificial habitats.","uniquename":"PMID:35359202"}


id: GO_REF:0000094
data:
  {"abstract":"We have created a standard template for classes describing the development of a metazoan structure as a biological process. The underlying equivalence axiom template is \"'anatomical structure development' and 'results in development of' some E\", where E is a anatomical entity (UBERON:0001062).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of metazoan development as biological process in the Gene Ontology","uniquename":"GO_REF:0000094"}


id: PMID:34353908
data:
  {"abstract":"Biosynthesis of sterols, which are key constituents of canonical eukaryotic membranes, requires molecular oxygen. Anaerobic protists and deep-branching anaerobic fungi are the only eukaryotes in which a mechanism for sterol-independent growth has been elucidated. In these organisms, tetrahymanol, formed through oxygen-independent cyclization of squalene by a squalene-tetrahymanol cyclase, acts as a sterol surrogate. This study confirms an early report [C. J. E. A. Bulder,  Antonie Van Leeuwenhoek , 37, 353-358 (1971)] that  Schizosaccharomyces japonicus  is exceptional among yeasts in growing anaerobically on synthetic media lacking sterols and unsaturated fatty acids. Mass spectrometry of lipid fractions of anaerobically grown  Sch. japonicus  showed the presence of hopanoids, a class of cyclic triterpenoids not previously detected in yeasts, including hop-22(29)-ene, hop-17(21)-ene, hop-21(22)-ene, and hopan-22-ol. A putative gene in  Sch. japonicus  showed high similarity to bacterial squalene-hopene cyclase (SHC) genes and in particular to those of  Acetobacter  species. No orthologs of the putative  Sch. japonicus  SHC were found in other yeast species. Expression of the  Sch. japonicus  SHC gene ( Sjshc1 ) in  Saccharomyces cerevisiae  enabled hopanoid synthesis and stimulated anaerobic growth in sterol-free media, thus indicating that one or more of the hopanoids produced by SjShc1 could at least partially replace sterols. Use of hopanoids as sterol surrogates represents a previously unknown adaptation of eukaryotic cells to anaerobic growth. The fast anaerobic growth of  Sch. japonicus  in sterol-free media is an interesting trait for developing robust fungal cell factories for application in anaerobic industrial processes.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Bouwknegt J, Wiersma SJ, Ortiz-Merino RA, Doornenbal ESR, Buitenhuis P, Giera M, Müller C, Pronk JT","authors_abbrev":"Bouwknegt J et al.","canto_added_date":"2023-05-04 00:40:04","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"Proc Natl Acad Sci U S A 2021 Aug 10;118(32)","cv_annotations":{},"doi":"10.1073/pnas.2105225118","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2021","pubmed_entrez_date":"2021-08-06","pubmed_publication_date":"10 Aug 2021","terms_by_termid":{},"title":"A squalene-hopene cyclase in  Schizosaccharomyces japonicus  represents a eukaryotic adaptation to sterol-limited anaerobic environments.","uniquename":"PMID:34353908"}


id: GO_REF:0000091
data:
  {"abstract":"We have created a standard template for classes describing the cell migration process for a cell type as a biological process. The underlying equivalence axiom template is \"'cell migration' and 'alters_location_of' some C\", where C is a native cell (CL:0000004).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of cell migration as biological processes in the Gene Ontology","uniquename":"GO_REF:0000091"}


id: GO_REF:0000068
data:
  {"abstract":"We have created a standard template for classes each describing the metabolism, catabolism, or biosynthesis of a chemical entity (ChEBI) as a process. The underlying equivalence axiom templates are \"GO:0008152 and 'has participant' some X\" (metabolism), \"GO:0009056 and 'has input' some X\" (catabolism), \"GO:0009058 and 'has output' some X\" and (biosynthesis),  where X is a chemical entity (CHEBI:24431). The approach to combine GO and ChEBI has been described in the following publication: PMID:23895341.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of metabolic triad (metabolism, catabolism, biosynthesis) as biological process in the Gene Ontology","uniquename":"GO_REF:0000068"}


id: PMID:11921097
data:
  {"abstract":"The dimorphic fission yeast Schizosaccharomyces japonicus has proved to be an excellent experimental model for the investigation of the eukaryotic cell. Here we show that it has a haplontic life cycle, in which the diploid phase is confined to the zygote. To make it amenable to genetic and molecular analysis, we generated genetic markers and cloned a genomic sequence which acts as ars when integrated into a plasmid. Diploids suitable for testing complementation and recombination between markers can be formed by protoplast fusion. The complementation tests and the recombination frequencies determined in octads of spores identified 28 non-allelic groups (genes) of mutations of the auxotrophic and mycelium-negative mutants. Two groups of linked markers were also identified. The cloned fragment, which expresses ars activity, encodes a putative amino acid sequence highly similar to a conserved domain of proteins Cut1 (Schizosaccharomyces pombe), BimB (Aspergillus nidulans) and Esp1 (Saccharomyces cerevisiae).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Bozsik A, Szilagyi Z, Benko Z, Sipiczki M","authors_abbrev":"Bozsik A et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Method or reagent","citation":"Yeast 2002 Apr;19(6):485-98","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2002","pubmed_entrez_date":"2002-03-29","pubmed_publication_date":"Apr 2002","terms_by_termid":{},"title":"Marker construction and cloning of a cut1-like sequence with ARS activity in the fission yeast Schizosaccharomyces japonicus.","uniquename":"PMID:11921097"}


id: PMID:33232355
data:
  {"abstract":"Coenzyme Q (CoQ, ubiquinone) is an essential component of the electron transport system in aerobic organisms. Human type CoQ10, which has 10 units of isoprene in its quinone structure, is especially valuable as a food supplement. Therefore, studying the biosynthesis of CoQ10 is important not only for increasing metabolic knowledge, but also for improving biotechnological production. Herein, we show that Schizosaccharomyces pombe utilizes p-aminobenzoate (PABA) in addition to p-hydroxybenzoate (PHB) as a precursor for CoQ10 synthesis. We explored compounds that affect the synthesis of CoQ10 and found benzoic acid (Bz) at >5 μg/mL inhibited CoQ biosynthesis without accumulation of apparent CoQ intermediates. This inhibition was counteracted by incubation with a 10-fold lower amount of PABA or PHB. Overexpression of PHB-polyprenyl transferase encoded by ppt1 (coq2) also overcame the inhibition of CoQ biosynthesis by Bz. Inhibition by Bz was efficient in S. pombe and Schizosaccharomyces japonicus, but less so in Saccharomyces cerevisiae, Aureobasidium pullulans, and Escherichia coli. Bz also inhibited a S. pombe ppt1 (coq2) deletion strain expressing human COQ2, and this strain also utilized PABA as a precursor of CoQ10. Thus, Bz is likely to inhibit prenylation reactions involving PHB or PABA catalyzed by Coq2.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Nishida I, Yanai R, Matsuo Y, Kaino T, Kawamukai M","authors_abbrev":"Nishida I et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"PLoS One 2020;15(11):e0242616","cv_annotations":{},"doi":"10.1371/journal.pone.0242616","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2020","pubmed_entrez_date":"2020-11-24","pubmed_publication_date":"2020","terms_by_termid":{},"title":"Benzoic acid inhibits Coenzyme Q biosynthesis in Schizosaccharomyces pombe.","uniquename":"PMID:33232355"}


id: PMID:28954740
data:
  {"abstract":"After mitosis, nuclear reorganization occurs together with decondensation of mitotic chromosomes and reformation of the nuclear envelope, thereby restoring the Ran-GTP gradient between the nucleus and cytoplasm. The Ran-GTP gradient is dependent on Pim1/RCC1. Interestingly, a defect in Pim1/RCC1 in  Schizosaccharomyces pombe  causes postmitotic condensation of chromatin, namely hypercondensation, suggesting a relationship between the Ran-GTP gradient and chromosome decondensation. However, how Ran-GTP interacts with chromosome decondensation is unresolved. To examine this interaction, we used  Schizosaccharomyces japonicus , which is known to undergo partial breakdown of the nuclear membrane during mitosis. We found that Pim1/RCC1 was localized on nuclear pores, but this localization failed in a temperature-sensitive mutant of Pim1/RCC1. The mutant cells exhibited hypercondensed chromatin after mitosis due to prolonged association of condensin on the chromosomes. Conceivably, a condensin-dephosphorylation defect might cause hypercondensed chromatin, since chromosomal localization of condensin is dependent on phosphorylation by cyclin-dependent kinase (CDK). Indeed, CDK-phospho-mimic mutation of condensin alone caused untimely condensin localization, resulting in hypercondensed chromatin. Together, these results suggest that dephosphorylation of CDK sites of condensin might require the Ran-GTP gradient produced by nuclear pore-localized Pim1/RCC1.","alleles_by_uniquename":{"SJAG_00871:allele-1":{"allele_type":"amino_acid_mutation","description":"cut3-T19E","gene_uniquename":"SJAG_00871","name":"cut3-T19E","uniquename":"SJAG_00871:allele-1"},"SJAG_04284:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04284","name":"nup61delta","uniquename":"SJAG_04284:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}},"annotation_curators":[{"annotation_count":12,"community_curator":true,"file_name":null,"file_type":null,"name":"Sho Okamoto","orcid":null}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2022-11-23","authors":"Aoki K, Niki H","authors_abbrev":"Aoki K et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2022-11-23 15:00:26","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Sho Okamoto","canto_curator_role":"community","canto_first_approved_date":"2022-11-23 15:00:26","canto_session_key":"7c26b8235c98c3eb","canto_session_submitted_date":"2022-11-23 15:00:18","canto_triage_status":"Curatable","citation":"Biol Open 2017 Nov 15;6(11):1614-1628","cv_annotations":{"biological_process":[{"annotations":[115478],"is_not":false,"summary":null,"term":"GO:0101024"},{"annotations":[115483],"is_not":false,"summary":null,"term":"GO:0006998"}],"cellular_component":[{"annotations":[115482],"is_not":false,"summary":null,"term":"GO:0120321"}],"multi_locus_phenotype":[{"annotations":[115485],"is_not":false,"summary":null,"term":"FYPO:0000619"},{"annotations":[115484],"is_not":false,"summary":null,"term":"FYPO:0001489"}],"single_locus_phenotype":[{"annotations":[115486],"is_not":false,"summary":null,"term":"FYPO:0000619"},{"annotations":[115480],"is_not":false,"summary":null,"term":"FYPO:0003738"},{"annotations":[115487],"is_not":false,"summary":null,"term":"FYPO:0000815"},{"annotations":[115479],"is_not":false,"summary":null,"term":"FYPO:0000082"},{"annotations":[115481],"is_not":false,"summary":null,"term":"FYPO:0003976"},{"annotations":[115477],"is_not":false,"summary":null,"term":"FYPO:0001387"}]},"doi":"10.1242/bio.027193","gene_count":4,"genes_by_uniquename":{"SJAG_00471":null,"SJAG_00871":null,"SJAG_04284":null,"SJAG_04464":null},"genotypes_by_uniquename":{"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"nup61delta":{"display_name":"nup61delta","display_uniquename":"nup61delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04284:allele-1","expression":"Null"}]}]},"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}},"ltp_gene_count":4,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[{"evidence":"Affinity Capture-Western","gene_uniquename":"SJAG_04464","interactor_uniquename":"SJAG_00471","reference_uniquename":"PMID:28954740","throughput":"low"}],"publication_year":"2017","pubmed_entrez_date":"2017-09-29","pubmed_publication_date":"15 Nov 2017","references_by_uniquename":{"PMID:28954740":null},"terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0000082":null,"FYPO:0000619":null,"FYPO:0000815":null,"FYPO:0001387":null,"FYPO:0001489":null,"FYPO:0003738":null,"FYPO:0003976":null,"FYPO_EXT:0000001":null,"GO:0006998":null,"GO:0101024":null,"GO:0120321":null},"title":"Release of condensin from mitotic chromosomes requires the Ran-GTP gradient in the reorganized nucleus.","uniquename":"PMID:28954740"}


id: PMID:25942548
data:
  {"abstract":"New work shows the anillin-related protein Mid1 does not position the cytokinetic ring in the fission yeast Schizosaccharomyces japonicus, unlike its role in S. pombe. Further analysis suggests the conserved function of Mid1-like anillin proteins may be in scaffolding, not positioning, the cytokinetic ring. ","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Moseley JB","authors_abbrev":"Moseley JB","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Review or comment","citation":"Curr Biol 2015 May 04;25(9):R364-6","cv_annotations":{},"doi":"10.1016/j.cub.2015.03.017","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2015","pubmed_entrez_date":"2015-05-06","pubmed_publication_date":"04 May 2015","terms_by_termid":{},"title":"Cytokinesis: does Mid1 have an identity crisis?","uniquename":"PMID:25942548"}


id: GO_REF:0000075
data:
  {"abstract":"We have created a standard template for classes describing the transport of a chemical entity (ChEBI) into a cellular component as a biological process. The underlying equivalence axiom template is \"GO:0006810 and 'has_target_end_location' some T and 'imports' some S\", where T is a cellular component and S is a chemical entity (CHEBI:24431). The approach to combine GO and ChEBI has been described in the following publication: PMID:23895341.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of transport of a chemical into a cellular component as biological process in the Gene Ontology","uniquename":"GO_REF:0000075"}


id: PMID:35693892
data:
  {"abstract":"The S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 catalyzes biosynthesis of 4-demethylwyosine (imG-14), the precursor for wyosine, the hypermodified guanine-derived nucleotide present at position 37 of phenylalanine tRNAs of archaea and eukarya. Eukaryotic TYW1 enzymes contain N-terminal flavodoxin-like and C-terminal radical-SAM domains. We determined co-crystal structures of the flavodoxin-like domain of the putative Tyw1 from  Schizosaccharomyces japonicus  in complex with flavin mononucleotide (FMN), exploiting an unexpected anomalous scatterer present in the recombinant protein. Our results show how eukaryotic TYW1 enzymes bind the coenzyme FMN and will help further elucidation of the structural enzymology of 4-demethylwyosine synthesis.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Sjekloća L, Ferré-D'Amaré AR","authors_abbrev":"Sjekloća L et al.","canto_added_date":"2023-05-04 00:40:03","canto_curator_role":"JaponicusDB","canto_triage_status":"Structure","citation":"MicroPubl Biol 2022;2022","cv_annotations":{},"doi":"10.17912/micropub.biology.000570","gene_count":1,"genes_by_uniquename":{"SJAG_04265":null},"genotypes_by_uniquename":{},"ltp_gene_count":1,"ortholog_annotations":[],"paralog_annotations":[],"pdb_entries":[{"entry_authors":"Sjekloca L,Ferre-D'Amare AR","entry_authors_abbrev":"Sjekloca L et al.","experimental_method":"X-ray","gene_chains":[{"chain":"A","gene_uniquename":"SJAG_04265","position":"30-251"}],"pdb_id":"6puq","reference_uniquename":"PMID:35693892","resolution":"1.56","title":"1.56 A crystal structure of flavodoxin-like domain of Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN"},{"entry_authors":"Sjekloca L,Ferre D'Amare AR","entry_authors_abbrev":"Sjekloca L et al.","experimental_method":"X-ray","gene_chains":[{"chain":"A","gene_uniquename":"SJAG_04265","position":"76-251"}],"pdb_id":"6pup","reference_uniquename":"PMID:35693892","resolution":"1.89","title":"1.9 A crystal structure of flavodoxin-like domain of Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN"}],"physical_interactions":[],"publication_year":"2022","pubmed_entrez_date":"2022-06-13","pubmed_publication_date":"2022","terms_by_termid":{},"title":"Biochemical and structural characterization of the flavodoxin-like domain of the  Schizosaccharomyces japonicus  putative tRNA  Phe  4-demethylwyosine synthase Tyw1 in complex with FMN.","uniquename":"PMID:35693892"}


id: GO_REF:0000036
data:
  {"abstract":"The Gene Ontology Consortium uses the IC (Inferred by Curator) evidence code when an annotation cannot be supported by any direct evidence, but can be inferred by GO annotations that have been annotated to the same gene/gene product identifier in conjunction with the curator's knowledge of biology (supporting GO annotations must not be IC-evidenced). In many cases an IC-evidenced annotation simply applies the same reference that was used in the supporting GO annotation.  The use of IC evidence code in an annotation with reference GO_REF:0000036 signifies a curator inferred the GO term based on evidence from multiple sources of evidence/GO annotations. The 'with/from' field in these annotations will therefore supply more than one GO identifier, obtained from the set of supporting GO annotations assigned to the same gene/gene product identifier which cite publicly-available references.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO Annotation working group","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Manual annotations that require more than one source of functional data to support the assignment of the associated GO term","uniquename":"GO_REF:0000036"}


id: PMID:29173643
data:
  {"abstract":"In the beverage fermentation industry, especially at the craft or micro level, there is a movement to incorporate as many local ingredients as possible to both capture terroir and stimulate local economies. In the case of craft beer, this has traditionally only encompassed locally sourced barley, hops, and other agricultural adjuncts. The identification and use of novel yeasts in brewing lags behind. We sought to bridge this gap by bio-prospecting for wild yeasts, with a focus on the American Midwest. We isolated 284 different strains from 54 species of yeast and have begun to determine their fermentation characteristics. During this work, we found several isolates of five species that produce lactic acid and ethanol during wort fermentation: Hanseniaspora vineae, Lachancea fermentati, Lachancea thermotolerans, Schizosaccharomyces japonicus, and Wickerhamomyces anomalus. Tested representatives of these species yielded excellent attenuation, lactic acid production, and sensory characteristics, positioning them as viable alternatives to lactic acid bacteria (LAB) for the production of sour beers. Indeed, we suggest a new LAB-free paradigm for sour beer production that we term \"primary souring\" because the lactic acid production and resultant pH decrease occurs during primary fermentation, as opposed to kettle souring or souring via mixed culture fermentation.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Osburn K, Amaral J, Metcalf SR, Nickens DM, Rogers CM, Sausen C, Caputo R, Miller J, Li H, Tennessen JM, Bochman ML","authors_abbrev":"Osburn K et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Biotech","citation":"Food Microbiol 2018 Apr;70:76-84","cv_annotations":{},"doi":"10.1016/j.fm.2017.09.007","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2018","pubmed_entrez_date":"2017-11-28","pubmed_publication_date":"Apr 2018","terms_by_termid":{},"title":"Primary souring: A novel bacteria-free method for sour beer production.","uniquename":"PMID:29173643"}


id: GO_REF:0000011
data:
  {"abstract":"A Hidden Markov Model (HMM) is a statistical representation of patterns found in a data set. When using HMMs with proteins, the HMM is a statistical model of the patterns of the amino acids found in a multiple alignment of a set of proteins called the \"seed\". Seed proteins are chosen based on sequence similarity to each other. Seed members can be chosen with different levels of relationship to each other. They can be members of a superfamily (ex. ABC transporter, ATP-binding proteins), they can all share the same exact specific function (ex. biotin synthase) or they could share another type of relationship of intermediate specificity (ex. subfamily, domain). New proteins can be scored against the model generated from the seed according to how closely the patterns of amino acids in the new proteins match those in the seed. There are two scores assigned to the HMM which allow annotators to judge how well any new protein scores to the model. Proteins scoring above the \"trusted cutoff\" score can be assumed to be part of the group defined by the seed. Proteins scoring below the \"noise cutoff\" score can be assumed to NOT be a part of the group. Proteins scoring between the trusted and noise cutoffs may be part of the group but may not. One of the important features of HMMs is that they are built from a multiple alignment of protein sequences, not a pairwise alignment. This is significant, since shared similarity between many proteins is much more likely to indicate shared functional relationship than sequence similarity between just two proteins. The usefulness of an HMM is directly related to the amount of care that is taken in chosing the seed members, building a good multiple alignment of the seed members, assessing the level of specificity of the model, and choosing the cutoff scores correctly. In order to properly assess what functional relevance an above-trusted scoring HMM match has to a query, one must carefully determine what the functional scope of the HMM is. If the HMM models proteins that all share the same function then it is likely possible to assign a specific function to high-scoring match proteins based on the HMM. If the HMM models proteins that have a wide variety of functions, then it will not be possible to assign a specific function to the query based on the HMM match, however, depending on the nature of the HMM in question, it may be possible to assign a more general (family or subfamily level) function. In order to determine the functional scope of an HMM, one must carefully read the documentation associated with the HMM. The annotator must also consider whether the function attributed to the proteins in the HMM makes sense for the query based on what is known about the organism in which the query protein resides and in light of any other information that might be available about the query protein. After carefully considering all of these issues the annotator makes an annotation.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Michelle Gwinn, TIGR curators","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Hidden Markov Models (TIGR)","uniquename":"GO_REF:0000011"}


id: PMID:26896847
data:
  {"abstract":"Evolution provides the unifying framework with which to understand biology. The coherent investigation of genic and genomic data often requires comparative genomics analyses based on whole-genome alignments, sets of homologous genes and other relevant datasets in order to evaluate and answer evolutionary-related questions. However, the complexity and computational requirements of producing such data are substantial: this has led to only a small number of reference resources that are used for most comparative analyses. The Ensembl comparative genomics resources are one such reference set that facilitates comprehensive and reproducible analysis of chordate genome data. Ensembl computes pairwise and multiple whole-genome alignments from which large-scale synteny, per-base conservation scores and constrained elements are obtained. Gene alignments are used to define Ensembl Protein Families, GeneTrees and homologies for both protein-coding and non-coding RNA genes. These resources are updated frequently and have a consistent informatics infrastructure and data presentation across all supported species. Specialized web-based visualizations are also available including synteny displays, collapsible gene tree plots, a gene family locator and different alignment views. The Ensembl comparative genomics infrastructure is extensively reused for the analysis of non-vertebrate species by other projects including Ensembl Genomes and Gramene and much of the information here is relevant to these projects. The consistency of the annotation across species and the focus on vertebrates makes Ensembl an ideal system to perform and support vertebrate comparative genomic analyses. We use robust software and pipelines to produce reference comparative data and make it freely available. Database URL: http://www.ensembl.org.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Herrero J, Muffato M, Beal K, Fitzgerald S, Gordon L, Pignatelli M, Vilella AJ, Searle SM, Amode R, Brent S, Spooner W, Kulesha E, Yates A, Flicek P","authors_abbrev":"Herrero J et al.","canto_curator_role":"JaponicusDB","citation":"Database (Oxford) 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