# terms

id: PBO:0048998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glypican 6","termid":"PBO:0048998"}


id: GO:0036344
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Generation and organization of a platelet, a non-nucleated disk-shaped cell formed by extrusion from megakaryocytes, found in the blood of all mammals, and mainly involved in blood coagulation.","definition_xrefs":["CL:0000233","GOC:vk","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell morphogenesis","termid":"GO:0000902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"platelet morphogenesis","termid":"GO:0036344"}


id: PBO:0003560
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.4.1.198","termid":"PBO:0003560"}


id: GO:1904409
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of secretory granule organization.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:15039777"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organelle organization","termid":"GO:0033043"},{"relation_name":"regulates","term_name":"secretory granule organization","termid":"GO:0033363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of secretory granule organization","synonyms":[{"name":"regulation of secretory granule organisation","type":"exact"},{"name":"regulation of secretory granule organization and biogenesis","type":"related"}],"termid":"GO:1904409"}


id: GO:0002797
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of antibacterial peptide secretion.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antibacterial peptide production","termid":"GO:0002786"},{"relation_name":"is_a","term_name":"regulation of antimicrobial peptide secretion","termid":"GO:0002794"},{"relation_name":"regulates","term_name":"antibacterial peptide secretion","termid":"GO:0002779"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of antibacterial peptide secretion","termid":"GO:0002797"}


id: GO:1900757
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of D-amino-acid oxidase activity.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of oxidoreductase activity","termid":"GO:0051341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of D-amino-acid oxidase activity","synonyms":[{"name":"regulation of D-amino-acid:oxygen oxidoreductase (deaminating)","type":"exact"},{"name":"regulation of L-amino acid:O2 oxidoreductase activity","type":"exact"},{"name":"regulation of new yellow enzyme","type":"related"}],"termid":"GO:1900757"}


id: GO:1900166
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of glial cell-derived neurotrophic factor production.","definition_xrefs":["GOC:yaf","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"glial cell-derived neurotrophic factor production","termid":"GO:0044467"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of glial cell-derived neurotrophic factor production","synonyms":[{"name":"regulation of GDNF secretion","type":"narrow"},{"name":"regulation of glial cell line-derived neurotrophic factor secretion","type":"related"},{"name":"regulation of glial cell-derived neurotrophic factor secretion","type":"narrow"}],"termid":"GO:1900166"}


id: GO:1904203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of iodide transport.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:20392814"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of monoatomic anion transport","termid":"GO:1903793"},{"relation_name":"is_a","term_name":"regulation of iodide transport","termid":"GO:1904201"},{"relation_name":"positively_regulates","term_name":"iodide transport","termid":"GO:0015705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of iodide transport","synonyms":[{"name":"activation of iodide transport","type":"narrow"},{"name":"up regulation of iodide transport","type":"exact"},{"name":"up-regulation of iodide transport","type":"exact"},{"name":"upregulation of iodide transport","type":"exact"}],"termid":"GO:1904203"}


id: GO:0071882
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A phospholipase C-activating receptor G protein-coupled receptor signaling pathway initiated by ligand binding to an adrenergic receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:BHF","GOC:mah","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipase C-activating G protein-coupled receptor signaling pathway","termid":"GO:0007200"},{"relation_name":"is_a","term_name":"adrenergic receptor signaling pathway","termid":"GO:0071875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"phospholipase C-activating adrenergic receptor signaling pathway","synonyms":[{"name":"activation of phospholipase C activity by adrenergic receptor signaling pathway","type":"related"},{"name":"activation of phospholipase C activity by adrenergic receptor signalling pathway","type":"related"},{"name":"adrenergic receptor, phospholipase C activating pathway","type":"related"}],"termid":"GO:0071882"}


id: GO:0006361
data:
  {"annotated_genes":["SJAG_00421","SJAG_02747","SJAG_04766","SJAG_00202","SJAG_05331","SJAG_01744","SJAG_01712","SJAG_01562","SJAG_00692","SJAG_02813","SJAG_03956"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87463,89267,91510,91684,103756,105219,105805,105846,107994,112497],"is_not":false,"summary":null,"term":"GO:0006361"},{"annotations":[63315,91847,105218],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0001188"}]},"cv_name":"biological_process","definition":"A transcription initiation process that takes place at a RNA polymerase I gene promoter. Ribosomal RNAs (rRNA) genes are transcribed by RNA polymerase I.","definition_xrefs":["GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated transcription initiation","termid":"GO:0006352"},{"relation_name":"part_of","term_name":"transcription by RNA polymerase I","termid":"GO:0006360"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00202":null,"SJAG_00421":null,"SJAG_00692":null,"SJAG_01562":null,"SJAG_01712":null,"SJAG_01744":null,"SJAG_02747":null,"SJAG_02813":null,"SJAG_03956":null,"SJAG_04766":null,"SJAG_05331":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0008150","GO:0006351","GO:0010467"],"is_obsolete":false,"name":"transcription initiation at RNA polymerase I promoter","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["GO:0001180"],"synonyms":[{"name":"transcription initiation from Pol I promoter","type":"exact"},{"name":"transcription initiation from RNA polymerase I promoter","type":"exact"},{"name":"transcription initiation from RNA polymerase I promoter for nuclear large rRNA transcript","type":"narrow"}],"termid":"GO:0006361","terms_by_termid":{"GO:0001188":null,"GO:0006361":null}}


id: GO:0032987
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of a protein-lipid complex into its constituent components.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex disassembly","termid":"GO:0032984"},{"relation_name":"is_a","term_name":"protein-lipid complex organization","termid":"GO:0071825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein-lipid complex disassembly","termid":"GO:0032987"}


id: PR:Q10296
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC22H10.02 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10296"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C22H10.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22H10.02","synonyms":[{"name":"Spom972h-SPAC22H10.02","type":"exact"}],"termid":"PR:Q10296"}


id: PBO:0047087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 136 member F, pseudogene","termid":"PBO:0047087"}


id: GO:0048766
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a protrusion or bulge is formed at the site of plant root hair outgrowth.","definition_xrefs":["PMID:12468740","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell morphogenesis","termid":"GO:0000902"},{"relation_name":"part_of","term_name":"root hair cell differentiation","termid":"GO:0048765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"root hair initiation","termid":"GO:0048766"}


id: PomGeneEx:0000021
data:
  {"annotation_feature_type":"gene","cv_name":"PomGeneExProt","definition":"A gene expression qualifier that indicates that a protein is present under a given set of conditions or at an indicated time.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"present","termid":"PomGeneEx:0000005"},{"relation_name":"is_a","term_name":"protein expression level","termid":"PomGeneEx:0000010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein present","synonyms":[{"name":"protein expression present","type":"exact"}],"termid":"PomGeneEx:0000021"}


id: GO:0097728
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A motile cilium where the axoneme has a ring of nine outer microtubule doublets but no central microtubules (and is therefore called a 9+0 axoneme).","definition_xrefs":["PMID:10330409","PMID:22118931","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"motile cilium","termid":"GO:0031514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"9+0 motile cilium","synonyms":[{"name":"motile 9+0 cilium","type":"exact"},{"name":"nodal cilium","type":"narrow"}],"termid":"GO:0097728"}


id: PBO:0059175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MRAP antisense RNA 1","termid":"PBO:0059175"}


id: PBO:0075554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPEM family member 2","termid":"PBO:0075554"}


id: PBO:0083006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Daughter cell-specific protein, may help establish daughter fate; relocalizes from bud neck to cytoplasm upon DNA replication stress; interacts with Csm1p","termid":"PBO:0083006"}


id: PR:O94391
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC29A10.16c gene.","definition_xrefs":["UniProtKB:O94391","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b5 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A10.16c","synonyms":[{"name":"Spom972h-SPBC29A10.16c","type":"exact"}],"termid":"PR:O94391"}


id: PBO:0045531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene","termid":"PBO:0045531"}


id: PATO:0001648
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An 1-D extent quality which is equal to the length of the closed curve of a circle.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"perimeter","termid":"PATO:0001711"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"circumference","termid":"PATO:0001648"}


id: PBO:0050661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family A (Hsp70) member 1A","termid":"PBO:0050661"}


id: GO:0016903
data:
  {"annotated_genes":["SJAG_00674","SJAG_03786","SJAG_00482","SJAG_02945","SJAG_02006","SJAG_01869","SJAG_02135","SJAG_00869","SJAG_03064","SJAG_03903","SJAG_02961","SJAG_02235","SJAG_03290","SJAG_03828","SJAG_06621","SJAG_00660","SJAG_06622","SJAG_06382","SJAG_00027","SJAG_00234","SJAG_02464","SJAG_00636","SJAG_03293"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[103183],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003842"},{"annotations":[96945,102879,75040],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004029"},{"annotations":[87915],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051268"},{"annotations":[87916],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051269"},{"annotations":[111831],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004073"},{"annotations":[96242],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004350"},{"annotations":[105467,105011,105468,105469,105466,105465,105017,105470,105015,105013,105016,105012,105014,105464],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004365"},{"annotations":[97278],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004043"},{"annotations":[94261],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003942"},{"annotations":[106195,102797,83591],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004591"},{"annotations":[104658,91107],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004739"},{"annotations":[104659,83592],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004738"},{"annotations":[84579,83602],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004777"},{"annotations":[83603,84580],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036243"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00234":null,"SJAG_00482":null,"SJAG_00636":null,"SJAG_00660":null,"SJAG_00674":null,"SJAG_00869":null,"SJAG_01869":null,"SJAG_02006":null,"SJAG_02135":null,"SJAG_02235":null,"SJAG_02464":null,"SJAG_02945":null,"SJAG_02961":null,"SJAG_03064":null,"SJAG_03290":null,"SJAG_03293":null,"SJAG_03786":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_06382":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["EC:1.2.-.-"],"synonyms":[{"name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, other acceptors","type":"narrow"}],"termid":"GO:0016903","terms_by_termid":{"GO:0003842":null,"GO:0003942":null,"GO:0004029":null,"GO:0004043":null,"GO:0004073":null,"GO:0004350":null,"GO:0004365":null,"GO:0004591":null,"GO:0004738":null,"GO:0004739":null,"GO:0004777":null,"GO:0036243":null,"GO:0051268":null,"GO:0051269":null}}


id: GO:1900838
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of fumigaclavine C biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of ergot alkaloid biosynthetic process","termid":"GO:1900823"},{"relation_name":"is_a","term_name":"regulation of fumigaclavine C biosynthetic process","termid":"GO:1900837"},{"relation_name":"negatively_regulates","term_name":"fumigaclavine C biosynthetic process","termid":"GO:1900809"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"negative regulation of fumigaclavine C biosynthetic process","synonyms":[{"name":"inhibition of fumigaclavine C biosynthetic process","type":"narrow"}],"termid":"GO:1900838"}


id: GO:0048169
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers.","definition_xrefs":["GOC:jid","PMID:11891290"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neuronal synaptic plasticity","termid":"GO:0048168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of long-term neuronal synaptic plasticity","termid":"GO:0048169"}


id: PBO:0086806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; YDL218W transcription is regulated by Azf1p and induced by starvation and aerobic conditions; expression also induced in cells treated with the mycotoxin patulin","termid":"PBO:0086806"}


id: PBO:0074704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 71D","termid":"PBO:0074704"}


id: GO:0004755
data:
  {"annotated_genes":["SJAG_01061"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105766],"is_not":false,"summary":null,"term":"GO:0004755"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-saccharopine + H2O + NADP+ = L-allysine + L-glutamate + H+ + NADPH.","definition_xrefs":["RHEA:10020","EC:1.5.1.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"saccharopine dehydrogenase activity","termid":"GO:0004753"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01061":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"saccharopine dehydrogenase (NADP+, L-glutamate-forming) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R02315","MetaCyc:RXN3O-127"],"synonyms":[{"name":"6-N-(L-1,3-dicarboxypropyl)-L-lysine:NADP+ oxidoreductase (L-glutamate-forming)","type":"related"},{"name":"N6-(L-1,3-dicarboxypropyl)-L-lysine:NADP+ oxidoreductase (L-glutamate-forming)","type":"related"},{"name":"aminoadipate semialdehyde-glutamate reductase activity","type":"related"},{"name":"aminoadipic semialdehyde-glutamate reductase activity","type":"related"},{"name":"aminoadipic semialdehyde-glutamic reductase activity","type":"related"},{"name":"epsilon-N-(L-glutaryl-2)-L-lysine:NAD+(P) oxidoreductase (L-2-aminoadipate-semialdehyde forming)","type":"related"},{"name":"saccharopine (nicotinamide adenine dinucleotide phosphate, glutamate-forming) dehydrogenase activity","type":"related"},{"name":"saccharopine reductase activity","type":"related"}],"termid":"GO:0004755","terms_by_termid":{"GO:0004755":null}}


id: GO:0033314
data:
  {"annotated_genes":["SJAG_02098","SJAG_02563","SJAG_01205","SJAG_03026","SJAG_03927","SJAG_01605","SJAG_03160","SJAG_03695","SJAG_01010","SJAG_04671","SJAG_02771","SJAG_02074","SJAG_00364","SJAG_01076","SJAG_01044","SJAG_02266","SJAG_04287"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85260,87535,88629,90044,90066,95274,95440,96611,99400,102680,103903,105384,108091,112112,112847,113137,113302],"is_not":false,"summary":null,"term":"GO:0033314"}]},"cv_name":"biological_process","definition":"A signal transduction process that contributes to a mitotic DNA replication checkpoint.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA replication checkpoint signaling","termid":"GO:0000076"},{"relation_name":"is_a","term_name":"mitotic DNA integrity checkpoint signaling","termid":"GO:0044774"},{"relation_name":"is_a","term_name":"mitotic G2/M transition checkpoint","termid":"GO:0044818"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_01010":null,"SJAG_01044":null,"SJAG_01076":null,"SJAG_01205":null,"SJAG_01605":null,"SJAG_02074":null,"SJAG_02098":null,"SJAG_02266":null,"SJAG_02563":null,"SJAG_02771":null,"SJAG_03026":null,"SJAG_03160":null,"SJAG_03695":null,"SJAG_03927":null,"SJAG_04287":null,"SJAG_04671":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0044772"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0044772"},{"rel_name":"negatively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0023052","GO:0044772"],"is_obsolete":false,"name":"mitotic DNA replication checkpoint signaling","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0031574","GO:0072443","GO:0072446","GO:0072459"],"synonyms":[{"name":"S-M DNA replication checkpoint","type":"exact"},{"name":"S-M checkpoint","type":"exact"},{"name":"S-phase checkpoint","type":"broad"},{"name":"mitotic DNA replication checkpoint","type":"exact"},{"name":"mitotic cell cycle DNA replication checkpoint","type":"exact"},{"name":"signal transduction involved in S-M checkpoint","type":"exact"},{"name":"signal transduction involved in mitotic DNA replication checkpoint","type":"narrow"},{"name":"signal transduction involved in mitotic G2/M transition decatenation checkpoint","type":"related"}],"termid":"GO:0033314","terms_by_termid":{"GO:0033314":null}}


id: PBO:0091525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation elongation and termination factor eIF5A","termid":"PBO:0091525"}


id: PBO:0088132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuolar membrane protein of unknown function; is conserved in mammals; predicted to contain eleven transmembrane helices; interacts with Pdr5p, a protein involved in multidrug resistance","termid":"PBO:0088132"}


id: FYPO:0000776
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein modification during vegetative growth","termid":"FYPO:0000549"},{"relation_name":"is_a","term_name":"normal protein phosphorylation","termid":"FYPO:0004422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal protein phosphorylation during vegetative growth","synonyms":[{"name":"normal protein phosphorylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000776"}


id: GO:0034908
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-chloro-N-isopropylacetanilide + O2 + 2 H+ + NADH = 2-chloro-N-isopropylacetamide + catechol + NAD+.","definition_xrefs":["UM-BBD_reactionID:r0724"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor","termid":"GO:0016708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"2-chloro-N-isopropylacetanilide 1,2-dioxygenase activity","secondary_identifiers":["EC:1.14.12.-"],"termid":"GO:0034908"}


id: GO:0055053
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: mannose + H+ = mannose + H+.","definition_xrefs":["GOC:ct"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose:proton symporter activity","termid":"GO:0009679"},{"relation_name":"is_a","term_name":"mannose transmembrane transporter activity","termid":"GO:0015578"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"mannose:proton symporter activity","synonyms":[{"name":"mannose:hydrogen symporter activity","type":"exact"}],"termid":"GO:0055053"}


id: PBO:0044214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cortactin","termid":"PBO:0044214"}


id: PBO:0072099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S12 pseudogene 30","termid":"PBO:0072099"}


id: PBO:0089748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gpl1-Gih35-Wdr83 complex RNA helicase subunit, Gih35","termid":"PBO:0089748"}


id: FYPO:0007363
data:
  {"alleles_by_uniquename":{"SJAG_02796:allele-1":{"allele_type":"amino_acid_mutation","description":"A343T","gene_uniquename":"SJAG_02796","name":"pyk1-A343T","uniquename":"SJAG_02796:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115601],"is_not":false,"summary":null,"term":"FYPO:0007363"}]},"cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of pyruvate kinase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"},{"relation_name":"is_a","term_name":"abnormal metabolic process","termid":"FYPO:0000860"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02796":null},"genotype_count":1,"genotypes_by_uniquename":{"pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pyk1-A343T(aa)","display_uniquename":"pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02796:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000652","FYPO:0000707","FYPO:0000654","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal pyruvate kinase activity","references_by_uniquename":{"PMID:37164017":null},"single_locus_annotated_genes":["SJAG_02796"],"single_locus_genotype_uniquenames":["pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type"],"termid":"FYPO:0007363","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000126":null,"FYPO:0007363":null,"FYPO_EXT:0000002":null}}


id: GO:0140351
data:
  {"annotated_genes":["SJAG_02897","SJAG_01731"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90528,94030],"is_not":false,"summary":null,"term":"GO:0140351"}]},"cv_name":"molecular_function","definition":"Catalysis of the movement of glycosylceramide from the exoplasmic to the cytosolic leaftlet of a membrane, using energy from the hydrolysis of ATP. Glycosylceramides are ceramides containing a functional group derived from a sugar.","definition_xrefs":["PMID:30530492"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sphingolipid transporter activity","termid":"GO:0046624"},{"relation_name":"is_a","term_name":"flippase activity","termid":"GO:0140327"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01731":null,"SJAG_02897":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140303"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0140303"],"is_obsolete":false,"name":"glycosylceramide flippase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"galactocerebroside flippase activity","type":"narrow"},{"name":"galactosylceramide flippase activity","type":"narrow"},{"name":"glucosylceramide flippase activity","type":"narrow"},{"name":"glycoceramide flippase activity","type":"exact"},{"name":"glycosylceramide flippase activity (exoplasmic to cytosolic leaftlet)","type":"exact"}],"termid":"GO:0140351","terms_by_termid":{"GO:0140351":null}}


id: PBO:0034194
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-developmentally_replaces","termid":"PBO:0034194"}


id: RO:0002322
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"ecologically_related_to","termid":"RO:0002321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"confers_advantage_in","termid":"RO:0002322"}


id: PBO:0003150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-AN1 type","termid":"PBO:0003150"}


id: PBO:0028941
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_poly(U)_polymerase_activity","termid":"PBO:0028941"}


id: GO:0000709
data:
  {"annotated_genes":["SJAG_01708","SJAG_02267","SJAG_00623","SJAG_03751","SJAG_04950","SJAG_03221","SJAG_01044","SJAG_02708"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84638,88974,93020,96621,97596,103734,106367,113136],"is_not":false,"summary":null,"term":"GO:0000709"}]},"cv_name":"biological_process","definition":"The conversion of the paired broken DNA and homologous duplex DNA into a four-stranded branched intermediate, known as a joint molecule, formed during meiotic recombination. These joint molecules contain Holliday junctions on either side of heteroduplex DNA.","definition_xrefs":["GOC:elh","PMID:8521495"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"reciprocal meiotic recombination","termid":"GO:0007131"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00623":null,"SJAG_01044":null,"SJAG_01708":null,"SJAG_02267":null,"SJAG_02708":null,"SJAG_03221":null,"SJAG_03751":null,"SJAG_04950":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006310"}],"interesting_parent_ids":["GO:0006310","GO:0006259","GO:0008150","GO:0140013","GO:0007049"],"is_obsolete":false,"name":"meiotic joint molecule formation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0000709","terms_by_termid":{"GO:0000709":null}}


id: SO:0001037
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A nucleotide region with either intra-genome or intracellular mobility, of varying length, which often carry the information necessary for transfer and recombination with the host genome.","definition_xrefs":["PMID:14681355"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"mobile","termid":"SO:0001234"},{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mobile_genetic_element","secondary_identifiers":["http://en.wikipedia.org/wiki/Mobile_genetic_element"],"synonyms":[{"name":"INSDC_feature:mobile_element","type":"exact"},{"name":"MGE","type":"exact"},{"name":"mobile genetic element","type":"exact"}],"termid":"SO:0001037"}


id: PBO:0059827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTERF1 pseudogene 1","termid":"PBO:0059827"}


id: GO:1900495
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of butyryl-CoA biosynthetic process from acetyl-CoA.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of amide metabolic process","termid":"GO:0034249"},{"relation_name":"is_a","term_name":"negative regulation of fatty acid biosynthetic process","termid":"GO:0045717"},{"relation_name":"is_a","term_name":"negative regulation of sulfur metabolic process","termid":"GO:0051175"},{"relation_name":"is_a","term_name":"negative regulation of purine nucleotide biosynthetic process","termid":"GO:1900372"},{"relation_name":"is_a","term_name":"regulation of butyryl-CoA biosynthetic process from acetyl-CoA","termid":"GO:1900494"},{"relation_name":"negatively_regulates","term_name":"butyryl-CoA biosynthetic process from acetyl-CoA","termid":"GO:0044579"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"negatively_regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0006629","GO:0006790","GO:0008150"],"is_obsolete":false,"name":"negative regulation of butyryl-CoA biosynthetic process from acetyl-CoA","synonyms":[{"name":"down regulation of butyryl-CoA biosynthesis from acetyl-CoA","type":"exact"},{"name":"down regulation of butyryl-CoA biosynthetic process from acetyl-CoA","type":"exact"},{"name":"down-regulation of butyryl-CoA biosynthesis from acetyl-CoA","type":"exact"},{"name":"down-regulation of butyryl-CoA biosynthetic process from acetyl-CoA","type":"exact"},{"name":"downregulation of butyryl-CoA biosynthesis from acetyl-CoA","type":"exact"},{"name":"downregulation of butyryl-CoA biosynthetic process from acetyl-CoA","type":"exact"},{"name":"inhibition of butyryl-CoA biosynthesis from acetyl-CoA","type":"exact"},{"name":"inhibition of butyryl-CoA biosynthetic process from acetyl-CoA","type":"narrow"},{"name":"negative regulation of butyryl-CoA biosynthesis from acetyl-CoA","type":"exact"}],"termid":"GO:1900495"}


id: GO:0001515
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Naturally occurring peptide that is an opioid (any non-alkaloid having an opiate-like effect that can be reversed by naloxone or other recognized morphine antagonist). These include Leu- and Met-enkephalin, dynorphin and neoendorphin, alpha, beta, gamma and delta endorphins formed from beta-lipotropin, various pronase-resistant peptides such as beta casamorphin, and other peptides whose opiate-like action seems to be indirect.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor ligand activity","termid":"GO:0048018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0140677","GO:0005515","GO:0003674","GO:0005488","GO:0098772"],"is_obsolete":false,"name":"opioid peptide activity","termid":"GO:0001515"}


id: PBO:0017803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic septin Spn1","termid":"PBO:0017803"}


id: PBO:0111819
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PQ loop","termid":"PBO:0111819"}


id: GO:0019540
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a siderophore from other compounds, including catechol. Catechol is one of the three major chemical groups incorporated into siderophore structures with hydroxamate and a-hydroxycarboxylate, each having a high selectivity for iron(3+).","definition_xrefs":["PMID:20376388"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol-containing compound biosynthetic process","termid":"GO:0009713"},{"relation_name":"is_a","term_name":"siderophore biosynthetic process","termid":"GO:0019290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"catechol-containing siderophore biosynthetic process","secondary_identifiers":["GO:0031189","GO:0031190"],"termid":"GO:0019540"}


id: PBO:0050993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intraflagellar transport 122","termid":"PBO:0050993"}


id: GO:0036509
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of an alpha-1,2-linked mannose from the B-chain of a glycoprotein oligosaccharide in the endoplasmic reticulum.","definition_xrefs":["GOC:bf","KEGG_REACTION:R06722","GOC:PARL","PMID:22160784"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum mannose trimming","termid":"GO:1904380"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"trimming of terminal mannose on B branch","synonyms":[{"name":"conversion of (Man)9(GlcNAc)2 to (Man)8B(GlcNAc)2","type":"related"},{"name":"conversion of M9 to M8B","type":"related"},{"name":"glycoprotein mannose trimming on B branch","type":"exact"}],"termid":"GO:0036509"}


id: GO:1990438
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The posttranscriptional addition a methyl group to the 2'-oxygen atom of a nucleotide residue in an U6 snRNA molecule.","definition_xrefs":["PMID:11842100","PMID:9844635"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snRNA 2'-O-methylation","termid":"GO:1990437"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016073"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016073","GO:0008150"],"is_obsolete":false,"name":"U6 2'-O-snRNA methylation","termid":"GO:1990438"}


id: PBO:0072375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS27A pseudogene 1","termid":"PBO:0072375"}


id: GO:0099065
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the spine apparatus membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of spine apparatus membrane (obsolete GO:0099065)","termid":"GO:0099065"}


id: PR:Q09841
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A proteasome subunit beta type-7 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01803"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome subunit beta type-2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23D3.07","secondary_identifiers":["UniProtKB:Q09841"],"synonyms":[{"name":"Spom972h-PSMB7","type":"exact"}],"termid":"PR:Q09841"}


id: GO:2000800
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of endocardial cushion to mesenchymal transition involved in heart valve formation.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endocardial cushion to mesenchymal transition","termid":"GO:0140049"},{"relation_name":"regulates","term_name":"endocardial cushion to mesenchymal transition involved in heart valve formation","termid":"GO:0003199"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of endocardial cushion to mesenchymal transition involved in heart valve formation","synonyms":[{"name":"regulation of endocardial cushion to mesenchymal transition involved in valve formation","type":"exact"}],"termid":"GO:2000800"}


id: GO:0070731
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of cyclic GMP (cGMP), into, out of or within a cell.","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanine nucleotide transport","termid":"GO:0001408"},{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"},{"relation_name":"is_a","term_name":"purine ribonucleotide transport","termid":"GO:0015868"},{"relation_name":"is_a","term_name":"cyclic nucleotide transport","termid":"GO:0070729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"cGMP transport","synonyms":[{"name":"cyclic GMP transport","type":"exact"}],"termid":"GO:0070731"}


id: PBO:0058062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4282","termid":"PBO:0058062"}


id: SO:0002336
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that encodes for 2S ribosomal RNA, which functions as a component of the large subunit of the ribosome in Drosophila and at least some other Diptera.","definition_xrefs":["PMID:407103","PMID:10788608","PMID:4847940","PMID:768488"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytosolic_LSU_rRNA_gene","termid":"SO:0002361"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic_rRNA_2S_gene","synonyms":[{"name":"2S rRNA gene","type":"exact"},{"name":"rRNA 2S gene","type":"exact"}],"termid":"SO:0002336"}


id: GO:0005468
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete small-molecule carrier or transporter (obsolete GO:0005468)","synonyms":[{"name":"small-molecule carrier or transporter","type":"exact"}],"termid":"GO:0005468"}


id: PBO:0056911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MER1 repeat containing imprinted transcript 1","termid":"PBO:0056911"}


id: GO:0071010
data:
  {"annotated_genes":["SJAG_00809","SJAG_03983","SJAG_02304","SJAG_02844","SJAG_01008","SJAG_00911","SJAG_00322","SJAG_02185","SJAG_00504","SJAG_00225","SJAG_04318","SJAG_00498","SJAG_03469","SJAG_03210","SJAG_04163","SJAG_05009","SJAG_02279","SJAG_00058","SJAG_00147","SJAG_03547","SJAG_01870","SJAG_00577","SJAG_03995","SJAG_00859","SJAG_04214","SJAG_00249","SJAG_02558","SJAG_01301","SJAG_05240","SJAG_00474","SJAG_01654","SJAG_04911"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[105571,106710,98622,97818,106692,102823,108425,104828,109335,84673,106118,87666,91279,101928,91024,97321,99289,109915,102459,103003,91437,106720,111295,91708,89471,93933,92430,108711,101573,89142,114724,112452],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071004"}]},"cv_name":"cellular_component","definition":"A spliceosomal complex that is formed by association of the 5' splice site and the branch point sequence with specific snRNPs. The prespliceosome includes many proteins in addition to those found in the bound snRNPs. Commitment to a given pair of 5' and 3' splice sites occurs at the time of prespliceosome formation. Prespliceosome complexes are not active for splicing, but are instead an early step in the assembly of a spliceosomal complex.","definition_xrefs":["PMID:19239890","PMID:17332742","GOC:mah","GOC:ab","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spliceosomal complex","termid":"GO:0005681"}],"gene_count":32,"genes_by_uniquename":{"SJAG_00058":null,"SJAG_00147":null,"SJAG_00225":null,"SJAG_00249":null,"SJAG_00322":null,"SJAG_00474":null,"SJAG_00498":null,"SJAG_00504":null,"SJAG_00577":null,"SJAG_00809":null,"SJAG_00859":null,"SJAG_00911":null,"SJAG_01008":null,"SJAG_01301":null,"SJAG_01654":null,"SJAG_01870":null,"SJAG_02185":null,"SJAG_02279":null,"SJAG_02304":null,"SJAG_02558":null,"SJAG_02844":null,"SJAG_03210":null,"SJAG_03469":null,"SJAG_03547":null,"SJAG_03983":null,"SJAG_03995":null,"SJAG_04163":null,"SJAG_04214":null,"SJAG_04318":null,"SJAG_04911":null,"SJAG_05009":null,"SJAG_05240":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"prespliceosome","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mammalian spliceosomal complex A","type":"narrow"},{"name":"prespliceosomal complex","type":"exact"},{"name":"yeast spliceosomal complex B","type":"narrow"}],"termid":"GO:0071010","terms_by_termid":{"GO:0071004":null}}


id: PBO:0046789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EZH inhibitory protein","termid":"PBO:0046789"}


id: PBO:0084195
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Histone H3 acetylase with a role in transcriptional regulation; sequence-specific activator of histone genes, binds specifically and cooperatively to pairs of UAS elements in core histone promoters, functions at or near TATA box; involved in S phase-specific acetylation of H3K56 at histone promoters, which is required for recruitment of SWI/SNF nucleosome remodeling complex and subsequent transcription","termid":"PBO:0084195"}


id: FYPO:0006613
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the termination of transcription by RNA polymerase II occurs to a lower extent than normal. Termination of all transcripts, or a subset of transcripts, may be affected.","definition_xrefs":["PomBase:mah","GO:0006369"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased transcription during vegetative growth","termid":"FYPO:0000781"},{"relation_name":"is_a","term_name":"abnormal termination of RNA polymerase II transcription","termid":"FYPO:0004811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0001320","FYPO:0001985","FYPO:0000294","FYPO:0000002"],"is_obsolete":false,"name":"decreased termination of RNA polymerase II transcription","synonyms":[{"name":"decreased RNA polymerase II transcription termination","type":"exact"},{"name":"decreased termination of RNA polymerase II transcription during mitotic cell cycle","type":"related"},{"name":"decreased termination of RNA polymerase II transcription during vegetative growth","type":"exact"},{"name":"reduced termination of RNA polymerase II transcription","type":"exact"}],"termid":"FYPO:0006613"}


id: PBO:0043994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CSGALNACT2 pseudogene 1","termid":"PBO:0043994"}


id: PBO:0044672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dopa decarboxylase","termid":"PBO:0044672"}


id: GO:0099086
data:
  {"annotated_genes":["SJAG_03438","SJAG_04303","SJAG_00172","SJAG_02490","SJAG_05333","SJAG_07002","SJAG_02652","SJAG_04748","SJAG_03843"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[107182,85200,105716,111576,87574,105619,86464,100928,90845],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030998"}]},"cv_name":"cellular_component","definition":"A proteinaceous scaffold found between homologous chromosomes during meiosis.","definition_xrefs":["GOC:vw","GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"condensed nuclear chromosome","termid":"GO:0000794"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00172":null,"SJAG_02490":null,"SJAG_02652":null,"SJAG_03438":null,"SJAG_03843":null,"SJAG_04303":null,"SJAG_04748":null,"SJAG_05333":null,"SJAG_07002":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0005694"],"is_obsolete":false,"name":"synaptonemal structure","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0099086","terms_by_termid":{"GO:0030998":null}}


id: PBO:0074809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 14A","termid":"PBO:0074809"}


id: PBO:0056812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major facilitator superfamily domain containing 5","termid":"PBO:0056812"}


id: GO:0021694
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the cerebellar Purkinje cell layer. This process pertains to the initial formation of a structure from unspecified parts. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells.","definition_xrefs":["ISBN:0838580343","GOC:dgh","GOC:dph","GO_REF:0000021","GOC:jid","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"cerebellar Purkinje cell layer morphogenesis","termid":"GO:0021692"},{"relation_name":"part_of","term_name":"cerebellar cortex formation","termid":"GO:0021697"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellar Purkinje cell layer formation","termid":"GO:0021694"}


id: GO:0102272
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glutathionate + a poly gamma-glutamylcysteine-beta-alanine = glycine + a poly gamma-glutamylcysteine-beta-alanine.","definition_xrefs":["GOC:pz","EC:2.3.2.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyltransferase activity","termid":"GO:0016755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0003674","GO:0016746","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"homophytochelatin synthase activity (polymer-forming)","secondary_identifiers":["MetaCyc:RXN-12528"],"termid":"GO:0102272"}


id: GO:0046017
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A cell cycle process that modulates the frequency, rate or extent of transcription from an RNA polymerase I promoter that occurs during the mitotic cell cycle.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase I promoter during mitotic cell cycle (obsolete GO:0046017)","synonyms":[{"name":"mitotic regulation of transcription from Pol I promoter","type":"exact"},{"name":"regulation of transcription from Pol I promoter during mitosis","type":"exact"},{"name":"regulation of transcription from RNA polymerase I promoter during mitosis","type":"exact"}],"termid":"GO:0046017"}


id: PBO:0058063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4283-1","termid":"PBO:0058063"}


id: GO:0097615
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change in the type IV pilus-dependent motility of a symbiont organism (i.e. the controlled movement of a bacterial cell which is dependent on the presence of type IV pili, and which includes social gliding motility and twitching motility). The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:als","PMID:12037568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation by host of symbiont process","termid":"GO:0051851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation by host of symbiont type IV pilus-dependent motility","synonyms":[{"name":"modulation by host of bacterial type IV pilus-dependent motility","type":"exact"}],"termid":"GO:0097615"}


id: SO:1000058
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A DNA point mutation that causes a substitution of an amino acid by an other.","definition_xrefs":["EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000058 sequence_variant_causing_non_synonymous_codon_change_in_transcript (obsolete SO:1000058)","synonyms":[{"name":"mutation causing non synonymous codon change in transcript","type":"related"},{"name":"non-synonymous codon change in transcript","type":"exact"},{"name":"sequence variant causing non synonymous codon change in transcript","type":"exact"}],"termid":"SO:1000058"}


id: GO:0031763
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a galanin receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor binding","termid":"GO:0071855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"galanin receptor binding","synonyms":[{"name":"galanin receptor ligand","type":"narrow"}],"termid":"GO:0031763"}


id: PBO:0030665
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_5.8S_rRNA_level","termid":"PBO:0030665"}


id: GO:1905254
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any positive regulation of epidermal growth factor receptor signaling pathway that is involved in heart process.","definition_xrefs":["GOC:bc","GOC:TermGenie","GOC:BHF","PMID:23069713","GO_REF:0000060","GOC:BHF_miRNA"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of epidermal growth factor receptor signaling pathway involved in heart process (obsolete GO:1905254)","synonyms":[{"name":"activation of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"activation of epidermal growth factor receptor signaling pathway involved in heart process","type":"narrow"},{"name":"positive regulation of EGF receptor signaling pathway involved in cardiac process","type":"related"},{"name":"positive regulation of EGF receptor signaling pathway involved in heart process","type":"exact"},{"name":"positive regulation of EGF receptor signalling pathway involved in cardiac process","type":"related"},{"name":"positive regulation of EGF receptor signalling pathway involved in heart process","type":"exact"},{"name":"positive regulation of EGFR signaling pathway involved in cardiac process","type":"related"},{"name":"positive regulation of EGFR signaling pathway involved in heart process","type":"exact"},{"name":"positive regulation of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"stimulation of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"stimulation of epidermal growth factor receptor signaling pathway involved in heart process","type":"narrow"},{"name":"up regulation of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"up regulation of epidermal growth factor receptor signaling pathway involved in heart process","type":"exact"},{"name":"up-regulation of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"up-regulation of epidermal growth factor receptor signaling pathway involved in heart process","type":"exact"},{"name":"upregulation of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"upregulation of epidermal growth factor receptor signaling pathway involved in heart process","type":"exact"}],"termid":"GO:1905254"}


id: GO:0009504
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The nascent cell membrane and cell wall structure that forms between two daughter nuclei near the center of a dividing plant cell. It develops at the equatorial region of the phragmoplast. It grows outwards to join with the lateral walls and form two daughter cells.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"cell plate","secondary_identifiers":["Wikipedia:Cell_plate"],"termid":"GO:0009504"}


id: _global:depends_on
data:
  {"annotation_feature_type":"gene","cv_name":"external","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"depends_on","secondary_identifiers":["RO:0002502"],"termid":"_global:depends_on"}


id: PBO:0038628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atypical chemokine receptor 4","termid":"PBO:0038628"}


id: PBO:0017818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E4 Prp19","termid":"PBO:0017818"}


id: PBO:0003544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT II complex subunit Dot2","termid":"PBO:0003544"}


id: PBO:0035796
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_ribosomal_S6_protein_phosphorylation_during_vegetative_growth","termid":"PBO:0035796"}


id: PBO:0080530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WASH complex subunit 2C","termid":"PBO:0080530"}


id: GO:1904490
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A negative regulation of transcription from RNA polymerase II promoter that results in negative regulation of mitochondrial unfolded protein response.","definition_xrefs":["PMID:25961505","GO_REF:0000063","GOC:TermGenie","GOC:kmv"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of mitochondrial unfolded protein response by negative regulation of transcription from RNA polymerase II promoter (obsolete GO:1904490)","synonyms":[{"name":"negative regulation of mitochondrial unfolded protein response by down regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"negative regulation of mitochondrial unfolded protein response by down regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of mitochondrial unfolded protein response by down-regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"negative regulation of mitochondrial unfolded protein response by down-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of mitochondrial unfolded protein response by downregulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"negative regulation of mitochondrial unfolded protein response by downregulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of mitochondrial unfolded protein response by inhibition of global transcription from RNA polymerase II promoter","type":"related"},{"name":"negative regulation of mitochondrial unfolded protein response by inhibition of transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of mitochondrial unfolded protein response by negative regulation of gene-specific transcription from RNA polymerase II promoter","type":"related"},{"name":"negative regulation of mitochondrial unfolded protein response by negative regulation of global transcription from Pol II promoter","type":"related"},{"name":"negative regulation of mitochondrial unfolded protein response by negative regulation of transcription from Pol II promoter","type":"exact"},{"name":"negative regulation of mitochondrial unfolded protein response by negative regulation of transcription from RNA polymerase II promoter, global","type":"related"},{"name":"negative regulation of mtUPR by down regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"negative regulation of mtUPR by down regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of mtUPR by down-regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"negative regulation of mtUPR by down-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of mtUPR by downregulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"negative regulation of mtUPR by downregulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of mtUPR by inhibition of global transcription from RNA polymerase II promoter","type":"related"},{"name":"negative regulation of mtUPR by inhibition of transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of mtUPR by negative regulation of gene-specific transcription from RNA polymerase II promoter","type":"related"},{"name":"negative regulation of mtUPR by negative regulation of global transcription from Pol II promoter","type":"related"},{"name":"negative regulation of mtUPR by negative regulation of transcription from Pol II promoter","type":"exact"},{"name":"negative regulation of mtUPR by negative regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of mtUPR by negative regulation of transcription from RNA polymerase II promoter, global","type":"related"}],"termid":"GO:1904490"}


id: FYPO:0002371
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which all cells in a population are inviable, and the population includes a mixture of spores, undivided germinated spores, and germinated spores that go on to divide once or twice. Some germinated spores remain septated and do not complete cell division.","definition_xrefs":["PomBase:jh","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable mixed population including spores, undivided germinated spores and divided germinated spores (obsolete FYPO:0002371)","synonyms":[{"name":"inviable mixed population including spores and undivided and divided germinated spores","type":"exact"}],"termid":"FYPO:0002371"}


id: PBO:0046171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extracellular leucine rich repeat and fibronectin type III domain containing 2","termid":"PBO:0046171"}


id: PBO:0090372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane P-type ATPase, calcium transporting Pmr1","termid":"PBO:0090372"}


id: GO:0032706
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-22 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of interleukin-22 production","termid":"GO:0032666"},{"relation_name":"negatively_regulates","term_name":"interleukin-22 production","termid":"GO:0032626"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of interleukin-22 production","secondary_identifiers":["GO:0045394"],"synonyms":[{"name":"down regulation of interleukin-22 production","type":"exact"},{"name":"down-regulation of interleukin-22 production","type":"exact"},{"name":"downregulation of interleukin-22 production","type":"exact"},{"name":"inhibition of interleukin-22 production","type":"narrow"},{"name":"negative regulation of IL-22 production","type":"exact"},{"name":"negative regulation of interleukin-22 biosynthetic process","type":"narrow"}],"termid":"GO:0032706"}


id: PR:Q9UUA2-1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-dependent DNA helicase pfh1 (Schizosaccharomyces pombe 972h-) that is a translation product of some mRNA giving rise to a protein with the amino acid sequence represented by UniProtKB:Q9UUA2-1.","definition_xrefs":["UniProtKB:Q9UUA2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-dependent DNA helicase pfh1 (Schizosaccharomyces pombe 972h-)","termid":"PR:Q9UUA2"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DNA helicase pfh1 isoform Mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1002.01","secondary_identifiers":["UniProtKB:Q9UUA2-1"],"synonyms":[{"name":"Spom972h-PIF1/iso:Mitochondrial","type":"exact"}],"termid":"PR:Q9UUA2-1"}


id: GO:0008068
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a chloride ion by a channel that opens when glutamate is bound by the channel complex or one of its constituent parts on the extracellular side of the plasma membrane.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellularly glutamate-gated ion channel activity","termid":"GO:0005234"},{"relation_name":"is_a","term_name":"chloride channel activity","termid":"GO:0005254"},{"relation_name":"is_a","term_name":"ligand-gated monoatomic anion channel activity","termid":"GO:0099095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"extracellularly glutamate-gated chloride channel activity","synonyms":[{"name":"extracellular-glutamate-gated chloride channel activity","type":"exact"}],"termid":"GO:0008068"}


id: GO:0019799
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + (alpha-tubulin) L-lysine = CoA + (alpha-tubulin) N6-acetyl-L-lysine.","definition_xrefs":["EC:2.3.1.108"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide-lysine-N-acetyltransferase activity","termid":"GO:0061733"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0034212"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0034212","GO:0140096","GO:0016740","GO:0016746","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"tubulin N-acetyltransferase activity","secondary_identifiers":["MetaCyc:TUBULIN-N-ACETYLTRANSFERASE-RXN","RHEA:15277"],"synonyms":[{"name":"TAT activity","type":"related"},{"name":"acetyl-CoA:alpha-tubulin-L-lysine 6-N-acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:alpha-tubulin-L-lysine N6-acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:alpha-tubulin-lysine N-acetyltransferase activity","type":"related"},{"name":"alpha-tubulin N-acetyltransferase activity","type":"related"},{"name":"alpha-tubulin acetylase activity","type":"related"},{"name":"alpha-tubulin acetyltransferase activity","type":"related"},{"name":"tubulin acetyltransferase activity","type":"related"}],"termid":"GO:0019799"}


id: PBO:0066869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 169","termid":"PBO:0066869"}


id: PBO:0087245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Serine-rich protein of unknown function; predicted to be palmitoylated; overproduction suppresses growth inhibition caused by exposure to immunosuppressant leflunomide; MLF3 has a paralog, VHS2, that arose from the whole genome duplication","termid":"PBO:0087245"}


id: PBO:0028744
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_during_cellular_response_to_methyl_methanesulfonate","termid":"PBO:0028744"}


id: PBO:0011117
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FYVE domain recruiting","termid":"PBO:0011117"}


id: GO:0019674
data:
  {"annotated_genes":["SJAG_03091","SJAG_02135","SJAG_01500","SJAG_01012","SJAG_04152","SJAG_01359","SJAG_00839","SJAG_01582","SJAG_02945","SJAG_01539","SJAG_04334","SJAG_02796","SJAG_03660","SJAG_03946","SJAG_00605","SJAG_00027","SJAG_01566","SJAG_02369","SJAG_03373","SJAG_06622","SJAG_03903","SJAG_02618","SJAG_04495","SJAG_04693","SJAG_00409","SJAG_02009","SJAG_01310","SJAG_00957","SJAG_03298","SJAG_02889","SJAG_02107","SJAG_03828","SJAG_06621","SJAG_04192","SJAG_00461"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88022,92554,93570],"is_not":false,"summary":null,"term":"GO:0019674"},{"annotations":[105460,101876,101877,104993,104996,90625,100533,105462,105459,105461,99723,104994,91115,104990,104991,94365,101510,101511,94094,101512,99465,104992,104995,105458,105463,112401,105457],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"},{"annotations":[95425,87187,86778,109151],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034356"},{"annotations":[113328,96141],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009435"},{"annotations":[101167],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019677"},{"annotations":[85163],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034355"},{"annotations":[101168],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006734"},{"annotations":[90083,102559,92820,108913],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006116"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving nicotinamide adenine dinucleotide (NAD), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid.","definition_xrefs":["ISBN:0618254153","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleotide metabolic process","termid":"GO:0006163"},{"relation_name":"is_a","term_name":"nicotinamide nucleotide metabolic process","termid":"GO:0046496"}],"gene_count":35,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00409":null,"SJAG_00461":null,"SJAG_00605":null,"SJAG_00839":null,"SJAG_00957":null,"SJAG_01012":null,"SJAG_01310":null,"SJAG_01359":null,"SJAG_01500":null,"SJAG_01539":null,"SJAG_01566":null,"SJAG_01582":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02369":null,"SJAG_02618":null,"SJAG_02796":null,"SJAG_02889":null,"SJAG_02945":null,"SJAG_03091":null,"SJAG_03298":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_03946":null,"SJAG_04152":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_04693":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"NAD metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"NAD (oxidized) metabolic process","type":"exact"},{"name":"NAD (oxidized) metabolism","type":"exact"},{"name":"NAD metabolism","type":"exact"},{"name":"NAD phosphorylation and dephosphorylation","type":"narrow"},{"name":"nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"nicotinamide adenine dinucleotide metabolism","type":"exact"},{"name":"oxidized NAD metabolic process","type":"exact"},{"name":"oxidized NAD metabolism","type":"exact"},{"name":"oxidized nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"oxidized nicotinamide adenine dinucleotide metabolism","type":"exact"}],"termid":"GO:0019674","terms_by_termid":{"GO:0006116":null,"GO:0006734":null,"GO:0009435":null,"GO:0019674":null,"GO:0019677":null,"GO:0034355":null,"GO:0034356":null,"GO:0061621":null}}


id: PBO:0052949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinase suppressor of ras 1","termid":"PBO:0052949"}


id: PBO:0088564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi alpha-1,2-mannosyltransferase Omh2","termid":"PBO:0088564"}


id: PBO:0109455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1341, pseudogene","termid":"PBO:0109455"}


id: FYPO:0004399
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing the protein kinase inhibitor KT5720.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000139","FYPO:0000003","FYPO:0002057","FYPO:0002060","FYPO:0002058"],"is_obsolete":false,"name":"normal growth on KT5720","synonyms":[{"name":"normal cell population growth in presence of KT5720","type":"exact"},{"name":"normal cell population growth on KT5720","type":"exact"},{"name":"normal cellular response to KT5720","type":"related"},{"name":"normal vegetative cell population growth on KT5720","type":"exact"}],"termid":"FYPO:0004399"}


id: SO:0001259
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosome originating in an apicoplast.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"apicoplast_sequence","termid":"SO:0000743"},{"relation_name":"is_a","term_name":"chromosome","termid":"SO:0000340"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apicoplast_chromosome","synonyms":[{"name":"apicoplast chromosome","type":"exact"}],"termid":"SO:0001259"}


id: PBO:0085237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peptidyl-prolyl cis/trans-isomerase; activator of the phosphotyrosyl phosphatase activity of PP2A; involved in G1 phase progression, microtubule dynamics, bud morphogenesis and DNA repair; required for rapid reduction of Sgs1p levels in response to rapamycin; subunit of the Tap42p-Sit4p-Rrd1p complex; protein increases in abundance and relative distribution to the nucleus increases upon DNA replication stress","termid":"PBO:0085237"}


id: PR:O74958
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mmi1 gene.","definition_xrefs":["UniProtKB:O74958","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YTH domain-containing protein mmi1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC736.12c","synonyms":[{"name":"Spom972h-mmi1","type":"exact"},{"name":"meiotic mRNA interception protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74958"}


id: PBO:0066527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RANBP2 like and GRIP domain containing 3","termid":"PBO:0066527"}


id: PBO:0052650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 18","termid":"PBO:0052650"}


id: GO:0033366
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a secretory granule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to organelle","termid":"GO:0033365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to secretory granule","synonyms":[{"name":"protein localisation in secretory granule","type":"exact"},{"name":"protein localization in secretory granule","type":"exact"}],"termid":"GO:0033366"}


id: GO:1990606
data:
  {"annotated_genes":["SJAG_02384","SJAG_02848"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96039,98850],"is_not":false,"summary":null,"term":"GO:1990606"}]},"cv_name":"molecular_function","definition":"Generation of a 'twisting' activity resulting in the scission of a membrane, driven by GTP hydrolysis.","definition_xrefs":["PMID:24515348","PMID:23530241","PMID:11242086"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GTPase motor activity","termid":"GO:0061791"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02384":null,"SJAG_02848":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003774"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003924"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0003924","GO:0016787","GO:0003774","GO:0003674"],"is_obsolete":false,"name":"membrane scission GTPase motor activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990606","terms_by_termid":{"GO:1990606":null}}


id: PBO:0056446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARK2 pseudogene 19","termid":"PBO:0056446"}


id: PBO:0056461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MBL associated serine protease 1","termid":"PBO:0056461"}


id: PBO:0001164
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.1.-.-","termid":"PBO:0001164"}


id: GO:0032370
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipid transport","termid":"GO:0032368"},{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"positive regulation of lipid localization","termid":"GO:1905954"},{"relation_name":"positively_regulates","term_name":"lipid transport","termid":"GO:0006869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of lipid transport","synonyms":[{"name":"activation of lipid transport","type":"narrow"},{"name":"stimulation of lipid transport","type":"narrow"},{"name":"up regulation of lipid transport","type":"exact"},{"name":"up-regulation of lipid transport","type":"exact"},{"name":"upregulation of lipid transport","type":"exact"}],"termid":"GO:0032370"}


id: PBO:0003406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extender of the chronological lifespan protein Ecl2","termid":"PBO:0003406"}


id: PBO:0076051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stathmin domain containing 1","termid":"PBO:0076051"}


id: GO:0003892
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A nuclear protein that associates as a trimer and then interacts with delta DNA polymerase and epsilon DNA polymerase, acting as an auxiliary factor for DNA replication and DNA repair.","definition_xrefs":["ISBN:0123668387"],"gene_count":0,"genotype_count":0,"name":"obsolete proliferating cell nuclear antigen (obsolete GO:0003892)","synonyms":[{"name":"PCNA","type":"exact"},{"name":"proliferating cell nuclear antigen","type":"exact"}],"termid":"GO:0003892"}


id: FYPO:0008142
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount heme measured in a cell is too low to detect.","definition_xrefs":["PMID:11248251"],"direct_ancestors":[{"relation_name":"is_a","term_name":"substance absent from cell","termid":"FYPO:0001888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"heme absent from cell","termid":"FYPO:0008142"}


id: PBO:0076197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO2 pseudogene 6","termid":"PBO:0076197"}


id: FYPO:0001413
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of sulfide (S2-, also called acid labile sulfide) measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"},{"relation_name":"is_a","term_name":"altered cellular sulfide level","termid":"FYPO:0001411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular sulfide level","synonyms":[{"name":"increased cellular acid labile sulfide level","type":"exact"},{"name":"increased cellular sulfide accumulation","type":"related"},{"name":"increased cellular sulfide ion level","type":"exact"},{"name":"increased cellular sulfide level during mitotic cell cycle","type":"related"},{"name":"increased cellular sulfide level during vegetative growth","type":"exact"},{"name":"increased cellular sulphide level","type":"exact"}],"termid":"FYPO:0001413"}


id: PBO:0108589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 13B","termid":"PBO:0108589"}


id: GO:0047882
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: AH(2) + estradiol-17beta + O2 = 6beta-hydroxyestradiol-17beta + A + H2O.","definition_xrefs":["RHEA:19137","EC:1.14.99.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"estradiol 6-beta-monooxygenase activity","secondary_identifiers":["KEGG_REACTION:R03086","MetaCyc:ESTRADIOL-6-BETA-MONOOXYGENASE-RXN"],"synonyms":[{"name":"estradiol 6-beta-hydroxylase activity","type":"related"},{"name":"estradiol 6b-hydroxylase activity","type":"exact"},{"name":"estradiol 6b-monooxygenase activity","type":"exact"},{"name":"estradiol 6beta-hydroxylase activity","type":"related"},{"name":"estradiol 6beta-monooxygenase activity","type":"related"},{"name":"estradiol-17beta,hydrogen-donor:oxygen oxidoreductase (6beta-hydroxylating)","type":"related"}],"termid":"GO:0047882"}


id: GO:2000886
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a glucuronoxylan.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucuronoxylan metabolic process","termid":"GO:0010413"},{"relation_name":"is_a","term_name":"xylan catabolic process","termid":"GO:0045493"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0071554","GO:0005975"],"is_obsolete":false,"name":"glucuronoxylan catabolic process","synonyms":[{"name":"glucuronoxylan catabolism","type":"exact"}],"termid":"GO:2000886"}


id: GO:0030974
data:
  {"annotated_genes":["SJAG_00835"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99720],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990545"}]},"cv_name":"biological_process","definition":"The process in which thiamine pyrophosphate is transported across a membrane.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"quaternary ammonium group transport","termid":"GO:0015697"},{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"},{"relation_name":"is_a","term_name":"organophosphate ester transport","termid":"GO:0015748"},{"relation_name":"is_a","term_name":"thiamine transmembrane transport","termid":"GO:0071934"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00835":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"thiamine pyrophosphate transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"TPP transport","type":"exact"},{"name":"thiamin diphosphate transport","type":"exact"},{"name":"thiamin pyrophosphate transport","type":"exact"},{"name":"thiamine diphosphate transport","type":"exact"},{"name":"thiamine pyrophosphate transport","type":"narrow"}],"termid":"GO:0030974","terms_by_termid":{"GO:1990545":null}}


id: PATO:0001044
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001044 absolute power (obsolete PATO:0001044)","termid":"PATO:0001044"}


id: PBO:0013746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protoporphyrinogen oxidase Hem14 (predicted)","termid":"PBO:0013746"}


id: GO:0045633
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mechanoreceptor differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mechanoreceptor differentiation","termid":"GO:0045631"},{"relation_name":"is_a","term_name":"positive regulation of neuron differentiation","termid":"GO:0045666"},{"relation_name":"positively_regulates","term_name":"mechanoreceptor differentiation","termid":"GO:0042490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of mechanoreceptor differentiation","synonyms":[{"name":"activation of mechanoreceptor differentiation","type":"narrow"},{"name":"stimulation of mechanoreceptor differentiation","type":"narrow"},{"name":"up regulation of mechanoreceptor differentiation","type":"exact"},{"name":"up-regulation of mechanoreceptor differentiation","type":"exact"},{"name":"upregulation of mechanoreceptor differentiation","type":"exact"}],"termid":"GO:0045633"}


id: PBO:0083304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps almost completely with the verified ORF MTL1/YGR023W","termid":"PBO:0083304"}


id: GO:1901367
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-cysteine stimulus.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organonitrogen compound","termid":"GO:0010243"},{"relation_name":"is_a","term_name":"response to amino acid","termid":"GO:0043200"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to L-cysteine","termid":"GO:1901367"}


id: PBO:0065248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 20A","termid":"PBO:0065248"}


id: PBO:0031291
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cell_population_growth_phenotype","termid":"PBO:0031291"}


id: PBO:0090071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L11","termid":"PBO:0090071"}


id: GO:0008515
data:
  {"annotated_genes":["SJAG_03960"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91875],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008506"}]},"cv_name":"molecular_function","definition":"Enables the transfer of sucrose from one side of a membrane to the other. Sucrose is the disaccharide O-beta-D-fructofuranosyl-(2->1)-alpha-D-glucopyranoside, a sweet-tasting, non-reducing sugar isolated industrially from sugar beet or sugar cane.","definition_xrefs":["GOC:mtg_transport","ISBN:0198506732","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disaccharide transmembrane transporter activity","termid":"GO:0015154"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03960":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"sucrose transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0019188"],"synonyms":[{"name":"sucrose permease (PTS) activity","type":"exact"},{"name":"sucrose permease activity","type":"related"}],"termid":"GO:0008515","terms_by_termid":{"GO:0008506":null}}


id: GO:0097512
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cardiac myofibril is a myofibril specific to cardiac muscle cells.","definition_xrefs":["GOC:cjm","GOC:devbiol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myofibril","termid":"GO:0030016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"cardiac myofibril","termid":"GO:0097512"}


id: SO:0001163
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A promoter motif with consensus sequence TCATTCG.","definition_xrefs":["PMID:16827941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA_motif","termid":"SO:0000713"},{"relation_name":"part_of","term_name":"RNApol_II_promoter","termid":"SO:0000170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"INR1_motif","synonyms":[{"name":"DMp3","type":"exact"},{"name":"INR1 motif","type":"exact"},{"name":"directional motif p3","type":"exact"},{"name":"directional promoter motif 3","type":"exact"}],"termid":"SO:0001163"}


id: PBO:0042075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 144B, pseudogene","termid":"PBO:0042075"}


id: FYPO:0008124
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A abnormal nuclear envelope organization phenotype in which SPB fenestra in the nuclear envelope are larger than normal. SPB fenestra are the result of SPB extrusion.","definition_xrefs":["PMID:37783794"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear envelope organization","termid":"FYPO:0000815"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased nuclear envelope SPB fenestra size","termid":"FYPO:0008124"}


id: PBO:0088509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol phosphorylceramide synthase Aur1","termid":"PBO:0088509"}


id: PBO:0004277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"di-trans,poly-cis-decaprenylcistransferase(predicted)","termid":"PBO:0004277"}


id: PR:O94426
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC660.06 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94426"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WW domain-containing protein C660.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC660.06","synonyms":[{"name":"Spom972h-SPBC660.06","type":"exact"}],"termid":"PR:O94426"}


id: GO:0015298
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + cation(in) = solute(in) + cation(out).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete solute:monoatomic cation antiporter activity (obsolete GO:0015298)","synonyms":[{"name":"solute:cation antiporter activity","type":"exact"}],"termid":"GO:0015298"}


id: GO:0030963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The dihydroxylation of peptidyl-lysine to peptidyl-4,5-dihydroxy-L-lysine.","definition_xrefs":["PMID:10978343","RESID:AA0370"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-lysine hydroxylation","termid":"GO:0017185"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-lysine dihydroxylation to 4,5-dihydroxy-L-lysine","termid":"GO:0030963"}


id: GO:0045316
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of compound eye photoreceptor development.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of eye photoreceptor cell development","termid":"GO:0042480"},{"relation_name":"is_a","term_name":"regulation of compound eye photoreceptor development","termid":"GO:0045314"},{"relation_name":"negatively_regulates","term_name":"compound eye photoreceptor development","termid":"GO:0042051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of compound eye photoreceptor development","synonyms":[{"name":"down regulation of eye photoreceptor development","type":"broad"},{"name":"down-regulation of eye photoreceptor development","type":"broad"},{"name":"downregulation of eye photoreceptor development","type":"broad"},{"name":"inhibition of eye photoreceptor development","type":"broad"},{"name":"negative regulation of eye photoreceptor development","type":"broad"}],"termid":"GO:0045316"}


id: PBO:0031383
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cell_population_growth","termid":"PBO:0031383"}


id: GO:0035207
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:mtg_sensu","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune system process","termid":"GO:0002683"},{"relation_name":"is_a","term_name":"negative regulation of cell population proliferation","termid":"GO:0008285"},{"relation_name":"is_a","term_name":"regulation of hemocyte proliferation","termid":"GO:0035206"},{"relation_name":"negatively_regulates","term_name":"hemocyte proliferation","termid":"GO:0035172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of hemocyte proliferation","synonyms":[{"name":"down regulation of hemocyte proliferation","type":"exact"},{"name":"down-regulation of hemocyte proliferation","type":"exact"},{"name":"downregulation of hemocyte proliferation","type":"exact"},{"name":"inhibition of hemocyte proliferation","type":"narrow"},{"name":"negative regulation of arthropod blood cell proliferation","type":"exact"}],"termid":"GO:0035207"}


id: FYPO:0005935
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the frequency of occurrence of meiotic recombination is normal (i.e. indistinguishable from wild type). Meiotic recombination is a cellular process in which double strand breaks are formed and repaired through a double Holliday junction intermediate, resulting in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes.","definition_xrefs":["PMID:19470480","GO:0007131","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal meiotic recombination","termid":"FYPO:0000488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal meiotic recombination frequency","synonyms":[{"name":"normal occurrence of meiotic recombination","type":"exact"}],"termid":"FYPO:0005935"}


id: FYPO:0001035
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the fungal-type cell wall is thicker than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell wall thickness during vegetative growth","termid":"FYPO:0006745"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002946"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0002946"],"is_obsolete":false,"name":"increased cell wall thickness during vegetative growth","synonyms":[{"name":"increased cell wall thickness during mitotic cell cycle","type":"related"},{"name":"thickened cell wall during vegetative growth","type":"exact"}],"termid":"FYPO:0001035"}


id: PBO:0041656
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium voltage-gated channel auxiliary subunit gamma 2","termid":"PBO:0041656"}


id: GO:2000884
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a glucomannan.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide catabolic process","termid":"GO:0000272"},{"relation_name":"is_a","term_name":"glucomannan metabolic process","termid":"GO:0010391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"glucomannan catabolic process","synonyms":[{"name":"glucomannan catabolism","type":"exact"}],"termid":"GO:2000884"}


id: PBO:0111311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase chadoprop types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BioGRID_version","termid":"PBO:0111311"}


id: FYPO:0006153
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which DNA binding at a STREP motif by a gene product does not occur, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished DNA binding","termid":"FYPO:0000659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000653"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000653","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"abolished DNA binding at STREP motif","synonyms":[{"name":"DNA binding at STREP motif abolished","type":"exact"},{"name":"STREP motif binding abolished","type":"exact"},{"name":"abolished DNA binding at stress-starvation response element of Schizosaccharomyces pombe","type":"exact"}],"termid":"FYPO:0006153"}


id: PBO:0030340
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_RNA_level_during_cellular_response_to_oxidative_stress","termid":"PBO:0030340"}


id: FYPO:0003078
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the autophosphorylation of one or more specific proteins, or of specific protein sites, does not occur during a cellular response to DNA damage. Protein autophosphorylation is the phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein.","definition_xrefs":["GO:0031952","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein phosphorylation during cellular response to DNA damage","termid":"FYPO:0002898"},{"relation_name":"is_a","term_name":"abolished protein autophosphorylation during vegetative growth","termid":"FYPO:0003020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0002274","FYPO:0002494","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein autophosphorylation during cellular response to DNA damage","synonyms":[{"name":"abolished protein autophosphorylation during cellular response to DNA damage during mitotic cell cycle","type":"related"},{"name":"abolished protein autophosphorylation during cellular response to DNA damage during vegetative growth","type":"exact"},{"name":"protein autophosphorylation abolished during cellular response to DNA damage during vegetative growth","type":"exact"}],"termid":"FYPO:0003078"}


id: GO:0097208
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A specialized secretory organelle found in type II pneumocytes and involved in the synthesis, secretion, and reutilization of pulmonary surfactant.","definition_xrefs":["GOC:cjm","Wikipedia:Lamellar_granule"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lamellar body","termid":"GO:0042599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"alveolar lamellar body","termid":"GO:0097208"}


id: PBO:0068505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 94, pseudogene","termid":"PBO:0068505"}


id: PBO:0004482
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.14.-.-","termid":"PBO:0004482"}


id: GO:0004175
data:
  {"annotated_genes":["SJAG_03151","SJAG_02397","SJAG_02214","SJAG_04306","SJAG_00784","SJAG_05286","SJAG_00808","SJAG_03258","SJAG_04514","SJAG_00737","SJAG_05316","SJAG_00984","SJAG_00135","SJAG_05351","SJAG_04229","SJAG_00573","SJAG_03910","SJAG_01816","SJAG_04928","SJAG_02542","SJAG_00778","SJAG_00128","SJAG_04533","SJAG_01136","SJAG_02260","SJAG_01283","SJAG_00406","SJAG_04357","SJAG_00254","SJAG_03420","SJAG_02809","SJAG_04888","SJAG_03686","SJAG_01014","SJAG_01838","SJAG_01004","SJAG_03763","SJAG_03261","SJAG_04398","SJAG_04541","SJAG_04583","SJAG_00730","SJAG_01430","SJAG_00109","SJAG_04785","SJAG_03121","SJAG_02562","SJAG_01321","SJAG_04969","SJAG_16454","SJAG_01179","SJAG_01968","SJAG_03648","SJAG_03672","SJAG_04641","SJAG_01285","SJAG_03396","SJAG_03393","SJAG_02502","SJAG_02432"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84670,89277,89449,92328,92563,93735,95831,97965,107214,107453,107822,110692,111614,112002,113599,113858],"is_not":false,"summary":null,"term":"GO:0004175"},{"annotations":[90821],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042500"},{"annotations":[94500,90956,111644,90954,59741,78808,90955],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004190"},{"annotations":[87724,113598,111882],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004197"},{"annotations":[110006],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003923"},{"annotations":[93433,85699,93442,97123,98290,105260,101644,88409,114744,97166,107059,86379,112704,104145,109252,94409],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004222"},{"annotations":[99904,100894,83639,87711,99898,97369,90262,89369,105261,104146,114453,99158,89279,109473,93738],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004252"},{"annotations":[102189,86400],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070139"},{"annotations":[90103,93806,96314,106785],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004298"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.","direct_ancestors":[{"relation_name":"is_a","term_name":"peptidase activity","termid":"GO:0008233"}],"gene_count":60,"genes_by_uniquename":{"SJAG_00109":null,"SJAG_00128":null,"SJAG_00135":null,"SJAG_00254":null,"SJAG_00406":null,"SJAG_00573":null,"SJAG_00730":null,"SJAG_00737":null,"SJAG_00778":null,"SJAG_00784":null,"SJAG_00808":null,"SJAG_00984":null,"SJAG_01004":null,"SJAG_01014":null,"SJAG_01136":null,"SJAG_01179":null,"SJAG_01283":null,"SJAG_01285":null,"SJAG_01321":null,"SJAG_01430":null,"SJAG_01816":null,"SJAG_01838":null,"SJAG_01968":null,"SJAG_02214":null,"SJAG_02260":null,"SJAG_02397":null,"SJAG_02432":null,"SJAG_02502":null,"SJAG_02542":null,"SJAG_02562":null,"SJAG_02809":null,"SJAG_03121":null,"SJAG_03151":null,"SJAG_03258":null,"SJAG_03261":null,"SJAG_03393":null,"SJAG_03396":null,"SJAG_03420":null,"SJAG_03648":null,"SJAG_03672":null,"SJAG_03686":null,"SJAG_03763":null,"SJAG_03910":null,"SJAG_04229":null,"SJAG_04306":null,"SJAG_04357":null,"SJAG_04398":null,"SJAG_04514":null,"SJAG_04533":null,"SJAG_04541":null,"SJAG_04583":null,"SJAG_04641":null,"SJAG_04785":null,"SJAG_04888":null,"SJAG_04928":null,"SJAG_04969":null,"SJAG_05286":null,"SJAG_05316":null,"SJAG_05351":null,"SJAG_16454":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0140096","GO:0008233","GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"endopeptidase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-5693081","Reactome:R-HSA-8866553","Reactome:R-HSA-1504193","Reactome:R-HSA-9762096","Reactome:R-HSA-8934819","Reactome:R-HSA-5358340","Reactome:R-HSA-187574","Reactome:R-HSA-1251997","Reactome:R-HSA-68825","Reactome:R-HSA-3640874","Reactome:R-HSA-8866858","Reactome:R-HSA-8952408","Reactome:R-HSA-5635854","Reactome:R-HSA-8849797","Reactome:R-HSA-9011313","Reactome:R-HSA-8852354","Reactome:R-HSA-174203","Reactome:R-HSA-5607731","Reactome:R-HSA-180573","Reactome:R-HSA-8850992","Reactome:R-HSA-5658430","Reactome:R-HSA-9755306","Reactome:R-HSA-5607724","Reactome:R-HSA-1236970","Reactome:R-HSA-4608855","Reactome:R-HSA-9010096","Reactome:R-HSA-5387392","Reactome:R-HSA-983158","Reactome:R-HSA-174105","Reactome:R-HSA-353125","Reactome:R-HSA-193682","Reactome:R-HSA-8957265","Reactome:R-HSA-8854044","GO:0016809","Reactome:R-HSA-209061","Reactome:R-HSA-1234159","Reactome:R-HSA-5610760","Reactome:R-HSA-4641256","Reactome:R-HSA-69016","Reactome:R-HSA-5358460","Reactome:R-HSA-188191","Reactome:R-HSA-5610758","Reactome:R-HSA-6784628","Reactome:R-HSA-8854071","Reactome:R-HSA-75825","Reactome:R-HSA-9008110","Reactome:R-HSA-9755303","Reactome:R-HSA-9009362","Reactome:R-HSA-4641260","Reactome:R-HSA-174255","Reactome:R-HSA-450466","Reactome:R-HSA-9604642","Reactome:R-HSA-174202","Reactome:R-HSA-5668520","Reactome:R-HSA-74730","Reactome:R-HSA-9614271","Reactome:R-HSA-983150","Reactome:R-HSA-1433374","Reactome:R-HSA-5610754","Reactome:R-HSA-2130282","Reactome:R-HSA-180603","Reactome:R-HSA-5687112","Reactome:R-HSA-3928656","Reactome:R-HSA-8939801","Reactome:R-HSA-8932355","Reactome:R-HSA-5362448","Reactome:R-HSA-6784676","Reactome:R-HSA-2213200","Reactome:R-HSA-1168640","Reactome:R-HSA-1236935","Reactome:R-HSA-211715","Reactome:R-HSA-5610757","Reactome:R-HSA-264458","Reactome:R-HSA-5668481","Reactome:R-HSA-69600","Reactome:R-HSA-174058","Reactome:R-HSA-68948","Reactome:R-HSA-5635868"],"synonyms":[{"name":"elastase activity","type":"related"},{"name":"endoprotease activity","type":"narrow"},{"name":"proteasome endopeptidase activity","type":"narrow"},{"name":"proteinase","type":"narrow"}],"termid":"GO:0004175","terms_by_termid":{"GO:0003923":null,"GO:0004175":null,"GO:0004190":null,"GO:0004197":null,"GO:0004222":null,"GO:0004252":null,"GO:0004298":null,"GO:0042500":null,"GO:0070139":null}}


id: GO:1903778
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a vacuolar membrane.","definition_xrefs":["GOC:TermGenie","GO_REF:0000087","PMID:25378562"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to membrane","termid":"GO:0072657"},{"relation_name":"is_a","term_name":"protein localization to vacuole","termid":"GO:0072665"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to vacuolar membrane","synonyms":[{"name":"protein localisation in vacuolar membrane","type":"exact"},{"name":"protein localisation to vacuolar membrane","type":"exact"},{"name":"protein localization in vacuolar membrane","type":"exact"}],"termid":"GO:1903778"}


id: GO:0047510
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-citramalate = H2O + mesaconate.","definition_xrefs":["EC:4.2.1.34","RHEA:13529"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"(S)-2-methylmalate dehydratase activity","secondary_identifiers":["KEGG_REACTION:R03693","MetaCyc:S-2-METHYLMALATE-DEHYDRATASE-RXN"],"synonyms":[{"name":"(+)-citramalate hydro-lyase activity","type":"related"},{"name":"(+)-citramalic hydro-lyase activity","type":"related"},{"name":"(S)-2-methylmalate hydro-lyase (2-methylfumarate-forming)","type":"related"},{"name":"(S)-2-methylmalate hydro-lyase activity","type":"related"},{"name":"L-citramalate hydrolase activity","type":"related"},{"name":"citramalate dehydratase activity","type":"related"},{"name":"mesaconase activity","type":"related"},{"name":"mesaconate hydratase activity","type":"related"},{"name":"mesaconate mesaconase activity","type":"related"}],"termid":"GO:0047510"}


id: PBO:0029876
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3_acetylation","termid":"PBO:0029876"}


id: PBO:0043025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"charged multivesicular body protein 1B2, pseudogene","termid":"PBO:0043025"}


id: PBO:0068937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 180, pseudogene","termid":"PBO:0068937"}


id: GO:1901831
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving all-trans-neoxanthin.","definition_xrefs":["GOC:yaf","PMID:11029576","MetaCyc:PWY-6809","UniPathway:UPA00388","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xanthophyll metabolic process","termid":"GO:0016122"},{"relation_name":"is_a","term_name":"epoxide metabolic process","termid":"GO:0097176"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"all-trans-neoxanthin metabolic process","synonyms":[{"name":"all-trans-neoxanthin metabolism","type":"exact"},{"name":"neoxanthin metabolic process","type":"exact"},{"name":"neoxanthin metabolism","type":"exact"}],"termid":"GO:1901831"}


id: PBO:0061220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar protein 11","termid":"PBO:0061220"}


id: GO:0038183
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by bile acid binding to its receptor, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:12016314","GOC:bf","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal transduction","termid":"GO:0007165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"bile acid signaling pathway","termid":"GO:0038183"}


id: GO:1903183
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of SUMO ligase activity.","definition_xrefs":["GOC:PARL","GOC:TermGenie","GOC:bf","GO_REF:0000059","PMID:16731528"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein sumoylation","termid":"GO:0033234"},{"relation_name":"is_a","term_name":"negative regulation of transferase activity","termid":"GO:0051348"},{"relation_name":"is_a","term_name":"regulation of SUMO transferase activity","termid":"GO:1903182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0070647"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"negative regulation of SUMO transferase activity","synonyms":[{"name":"down regulation of SMT3 conjugating enzyme","type":"exact"},{"name":"down regulation of SUMO conjugating enzyme activity","type":"exact"},{"name":"down regulation of SUMO ligase activity","type":"exact"},{"name":"down-regulation of SMT3 conjugating enzyme","type":"exact"},{"name":"down-regulation of SUMO conjugating enzyme activity","type":"exact"},{"name":"down-regulation of SUMO ligase activity","type":"exact"},{"name":"downregulation of SMT3 conjugating enzyme","type":"exact"},{"name":"downregulation of SUMO conjugating enzyme activity","type":"exact"},{"name":"downregulation of SUMO ligase activity","type":"exact"},{"name":"inhibition of SMT3 conjugating enzyme","type":"narrow"},{"name":"inhibition of SUMO conjugating enzyme activity","type":"narrow"},{"name":"inhibition of SUMO ligase activity","type":"narrow"},{"name":"negative regulation of SMT3 conjugating enzyme","type":"exact"},{"name":"negative regulation of SUMO conjugating enzyme activity","type":"exact"}],"termid":"GO:1903183"}


id: GO:0002678
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of a chronic inflammatory response.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of chronic inflammatory response","termid":"GO:0002676"},{"relation_name":"is_a","term_name":"positive regulation of inflammatory response","termid":"GO:0050729"},{"relation_name":"positively_regulates","term_name":"chronic inflammatory response","termid":"GO:0002544"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of chronic inflammatory response","synonyms":[{"name":"activation of chronic inflammatory response","type":"narrow"},{"name":"stimulation of chronic inflammatory response","type":"narrow"},{"name":"up regulation of chronic inflammatory response","type":"exact"},{"name":"up-regulation of chronic inflammatory response","type":"exact"},{"name":"upregulation of chronic inflammatory response","type":"exact"}],"termid":"GO:0002678"}


id: PBO:0028200
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_mitotic_DNA_damage_checkpoint_during_cellular_response_to_ionizing_radiation","termid":"PBO:0028200"}


id: PBO:0052319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KIAA1191","termid":"PBO:0052319"}


id: PBO:0025470
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sapk INteracting protein","termid":"PBO:0025470"}


id: GO:0035625
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an epidermal growth factor-activated receptor is activated via signaling events from a consequence of a G protein-coupled . This is an example of cross-talk between the EGF and GPCR signaling pathways.","definition_xrefs":["PMID:17655843","PMID:10622253","GOC:BHF","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete epidermal growth factor-activated receptor transactivation by G-protein coupled receptor signaling pathway (obsolete GO:0035625)","synonyms":[{"name":"EGFR transactivation by GPCR","type":"exact"},{"name":"EGFR transactivation upon GPCR stimulation","type":"exact"},{"name":"epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway","type":"exact"},{"name":"epidermal growth factor-activated receptor transactivation by G-protein coupled receptor signalling pathway","type":"exact"}],"termid":"GO:0035625"}


id: PBO:0090730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S12 Mrps12a","termid":"PBO:0090730"}


id: FYPO:0004272
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which ascospore release from an ascus is abnormal.","definition_xrefs":["GO:0071998","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process phenotype","termid":"FYPO:0000679"},{"relation_name":"is_a","term_name":"abnormal meiotic cell cycle process","termid":"FYPO:0002739"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal ascospore release from ascus","termid":"FYPO:0004272"}


id: PBO:0016582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complememtnation, functionally complements S. cerevisiae YOR330C","termid":"PBO:0016582"}


id: GO:1903512
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving phytanic acid.","definition_xrefs":["GOC:TermGenie","PMID:16799769","GO_REF:0000068","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long-chain fatty acid metabolic process","termid":"GO:0001676"},{"relation_name":"is_a","term_name":"methyl-branched fatty acid metabolic process","termid":"GO:0097089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"phytanic acid metabolic process","synonyms":[{"name":"phytanic acid metabolism","type":"exact"}],"termid":"GO:1903512"}


id: GO:0006268
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication.","definition_xrefs":["ISBN:0815316194","ISBN:071673706X"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA duplex unwinding","termid":"GO:0032508"},{"relation_name":"part_of","term_name":"DNA-templated DNA replication","termid":"GO:0006261"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0006260"],"is_obsolete":false,"name":"DNA unwinding involved in DNA replication","synonyms":[{"name":"DNA unwinding during replication","type":"related"},{"name":"DNA unwinding factor","type":"related"}],"termid":"GO:0006268"}


id: PBO:0063704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidoglycan recognition protein 3","termid":"PBO:0063704"}


id: PBO:0047086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 136 member E, pseudogene","termid":"PBO:0047086"}


id: GO:0021550
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the medulla oblongata over time, from its formation to the mature structure. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate.","definition_xrefs":["GOC:cls","GOC:dph","GO_REF:0000021","GOC:jid","ISBN:0838580343","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"hindbrain development","termid":"GO:0030902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"medulla oblongata development","synonyms":[{"name":"medulla development","type":"related"},{"name":"myelencephalon development","type":"related"}],"termid":"GO:0021550"}


id: RO:0002180
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.","direct_ancestors":[{"relation_name":"is_a","term_name":"has_part","termid":"BFO:0000051"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_component","termid":"RO:0002180"}


id: PBO:0090553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-K ortholog Sim4","termid":"PBO:0090553"}


id: PBO:0056108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LYPLA1 pseudogene 3","termid":"PBO:0056108"}


id: PBO:0062873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OTU deubiquitinase 7B","termid":"PBO:0062873"}


id: PBO:0076335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptotagmin 3","termid":"PBO:0076335"}


id: GO:0009630
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orientation of plant parts under the stimulation of gravity.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tropism","termid":"GO:0009606"},{"relation_name":"is_a","term_name":"response to gravity","termid":"GO:0009629"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"gravitropism","secondary_identifiers":["Wikipedia:Gravitropism"],"synonyms":[{"name":"geotropism","type":"exact"}],"termid":"GO:0009630"}


id: PBO:0044752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 39A pseudogene 1","termid":"PBO:0044752"}


id: PBO:0110970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSU72 antisense RNA 1","termid":"PBO:0110970"}


id: GO:0001821
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of histamine by a cell or tissue. It is formed by decarboxylation of histidine and it acts through receptors in smooth muscle and in secretory systems.","definition_xrefs":["GOC:mah","ISBN:0198506732","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretion","termid":"GO:0046903"},{"relation_name":"is_a","term_name":"histamine transport","termid":"GO:0051608"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"histamine secretion","termid":"GO:0001821"}


id: PBO:0080309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 73 pseudogene","termid":"PBO:0080309"}


id: PATO:0001881
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's forming two equal obtuse triangles with a short side in common.","definition_xrefs":["ISBN:0881923214","RKC:RKC"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrow-shaped","synonyms":[{"name":"sagittate","type":"exact"}],"termid":"PATO:0001881"}


id: GO:0038190
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by vascular endothelial growth factor (VEGF) binding to a neuropilin protein on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:rl","PMID:12852851","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular endothelial growth factor signaling pathway","termid":"GO:0038084"},{"relation_name":"is_a","term_name":"neuropilin signaling pathway","termid":"GO:0038189"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"VEGF-activated neuropilin signaling pathway","synonyms":[{"name":"VEGF-Npn-1 signaling","type":"exact"},{"name":"vascular endothelial growth factor-activated neuropilin signaling pathway","type":"exact"}],"termid":"GO:0038190"}


id: SO:0000609
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The string of non-encoded U's at the 3' end of a guide RNA (SO:0000602).","direct_ancestors":[{"relation_name":"adjacent_to","term_name":"guide_RNA","termid":"SO:0000602"},{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligo_U_tail","synonyms":[{"name":"oligo U tail","type":"exact"}],"termid":"SO:0000609"}


id: GO:0090463
data:
  {"annotated_genes":["SJAG_01471"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92714],"is_not":false,"summary":null,"term":"GO:0090463"}]},"cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of lysine within a cell.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular amino acid homeostasis","termid":"GO:0080144"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01471":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intracellular lysine homeostasis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cellular lysine homeostasis","type":"exact"},{"name":"lysine homeostasis","type":"exact"}],"termid":"GO:0090463","terms_by_termid":{"GO:0090463":null}}


id: PBO:0011149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human ASCC1 ortholog, implicated in transcriptional regulation (predicted)","termid":"PBO:0011149"}


id: PBO:0003330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ERCC-8 DNA repair homolog","termid":"PBO:0003330"}


id: PBO:0029438
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_degradation_during_nitrogen_starvation","termid":"PBO:0029438"}


id: PBO:0083172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps ORF PRP8/YHR165C","termid":"PBO:0083172"}


id: FYPO:0001221
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the ratio of the nuclear volume to the total cell volume is in the same range as wild type (approximately 0.076-0.089).","definition_xrefs":["PMID:17998401","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative phenotype","termid":"FYPO:0001312"},{"relation_name":"is_a","term_name":"vegetative cell phenotype","termid":"FYPO:0001320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal nucleus:cytoplasm ratio","synonyms":[{"name":"normal nuclear:cytoplasmic ratio","type":"exact"},{"name":"normal nuclear:cytoplasmic volume ratio","type":"exact"},{"name":"normal nucleus:cell volume ratio","type":"exact"},{"name":"normal nucleus:cytoplasm ratio during mitotic cell cycle","type":"related"},{"name":"normal nucleus:cytoplasm ratio during vegetative growth","type":"exact"},{"name":"normal nucleus:cytoplasm volume ratio","type":"exact"}],"termid":"FYPO:0001221"}


id: PBO:0043435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"connector enhancer of kinase suppressor of Ras 1","termid":"PBO:0043435"}


id: PBO:0078911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (anticodon TTG) 2-1","termid":"PBO:0078911"}


id: GO:0035897
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the hydrolysis of proteins in another organism by cleavage of their peptide bonds.","definition_xrefs":["GOC:bf","PMID:15922779","GOC:fj"],"gene_count":0,"genotype_count":0,"name":"obsolete proteolysis in other organism (obsolete GO:0035897)","termid":"GO:0035897"}


id: PBO:0057471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 589","termid":"PBO:0057471"}


id: PBO:0054601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2005","termid":"PBO:0054601"}


id: PBO:0082025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger ZZ-type and EF-hand domain containing 1","termid":"PBO:0082025"}


id: PBO:0087457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of a Golgi membrane exchange factor (Ric1p-Rgp1p); this complex catalyzes nucleotide exchange on Ypt6p","termid":"PBO:0087457"}


id: PBO:0034508
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_meiotic_sister_chromatid_segregation","termid":"PBO:0034508"}


id: GO:0042571
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An immunoglobulin complex that is secreted into extracellular space and found in mucosal areas or other tissues or circulating in the blood or lymph. In its canonical form, a circulating immunoglobulin complex is composed of two identical heavy chains and two identical light chains, held together by disulfide bonds. Some forms of are polymers of the basic structure and contain additional components such as J-chain and the secretory component.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin complex","termid":"GO:0019814"},{"relation_name":"part_of","term_name":"extracellular space","termid":"GO:0005615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005576","GO:0005575"],"is_obsolete":false,"name":"immunoglobulin complex, circulating","secondary_identifiers":["Wikipedia:Antibody"],"synonyms":[{"name":"antibody","type":"exact"}],"termid":"GO:0042571"}


id: PBO:0018072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioesterase superfamily protein","termid":"PBO:0018072"}


id: GO:0004842
data:
  {"annotated_genes":["SJAG_05274","SJAG_02347","SJAG_03883","SJAG_00188","SJAG_03387","SJAG_00209","SJAG_03968","SJAG_03006","SJAG_03657","SJAG_01360","SJAG_00435","SJAG_02575","SJAG_05236","SJAG_01637","SJAG_03613","SJAG_01772","SJAG_00855","SJAG_01535","SJAG_00931","SJAG_04783","SJAG_04600","SJAG_00552","SJAG_04857","SJAG_03970","SJAG_01900","SJAG_04151","SJAG_02521","SJAG_03324","SJAG_04309","SJAG_00819","SJAG_00509","SJAG_02299","SJAG_04966","SJAG_03175","SJAG_01165","SJAG_02371","SJAG_00561","SJAG_00173","SJAG_02308","SJAG_03831","SJAG_05022","SJAG_00500","SJAG_00111","SJAG_01992","SJAG_03860","SJAG_04429","SJAG_01253","SJAG_01507","SJAG_02169","SJAG_00208","SJAG_03615","SJAG_03618","SJAG_04990","SJAG_04612","SJAG_00300","SJAG_03005","SJAG_03191","SJAG_04915","SJAG_05323","SJAG_01533","SJAG_05340","SJAG_02685","SJAG_00341","SJAG_02668","SJAG_02746","SJAG_02851","SJAG_01854","SJAG_01679","SJAG_02319","SJAG_05264","SJAG_04619","SJAG_01212","SJAG_00293","SJAG_01593","SJAG_03112","SJAG_00475","SJAG_04573","SJAG_02918"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[93487],"is_not":false,"summary":null,"term":"GO:0004842"},{"annotations":[114848,112264],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140850"},{"annotations":[90453],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140851"},{"annotations":[83961,109046,87352,104243,112830,110327,102512,98344,84330,98056,84174,98193],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061631"},{"annotations":[96334,111456,84793,92885,88868,97948,85856,97262,101295,91499,87184,112751,91917,92617,84389,113231,86338,99108,100364,110063,103016,110380,94635,99506,101353,104944,92701,112752,101044,101954,85680,85478,101015,84185,84175,102934,109635,85925,84254,84473,86028,92804,104072,108875,109458,106034,90454,87782,97382,103936,108146,86854,114447,109728,99491,105713,113271,78776,106033,106298,89670,85046,100432,95479],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061630"},{"annotations":[88798],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034450"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y = Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.","definition_xrefs":["GOC:jh2","GOC:BioGRID","PMID:9635407"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like protein transferase 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activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-3788724","Reactome:R-HSA-5607756","Reactome:R-HSA-5610742","Reactome:R-HSA-936942","Reactome:R-HSA-936986","Reactome:R-HSA-9750946","GO:0004840","Reactome:R-HSA-983140","Reactome:R-HSA-9861563","Reactome:R-HSA-9645414","Reactome:R-HSA-2682349","Reactome:R-HSA-1358789","GO:0004841","Reactome:R-HSA-202534","Reactome:R-HSA-2769007","Reactome:R-HSA-9817362","Reactome:R-HSA-1234172","Reactome:R-HSA-173545","Reactome:R-HSA-918224","Reactome:R-HSA-211734","Reactome:R-HSA-2169050","Reactome:R-HSA-205118","Reactome:R-HSA-1169402","Reactome:R-HSA-174057","Reactome:R-HSA-1358790","Reactome:R-HSA-183089","Reactome:R-HSA-173542","Reactome:R-HSA-3780995","Reactome:R-HSA-5610746","Reactome:R-HSA-69598","Reactome:R-HSA-446877","Reactome:R-HSA-400267","Reactome:R-HSA-3249386","Reactome:R-HSA-1234163","Reactome:R-HSA-2730904","Reactome:R-HSA-9628444","Reactome:R-HSA-5667111","Reactome:R-HSA-936412","Reactome:R-HSA-174144","Reactome:R-HSA-183084","Reactome:R-HSA-9701000","Reactome:R-HSA-1169398","Reactome:R-HSA-3134804","Reactome:R-HSA-3134946","Reactome:R-HSA-68712","Reactome:R-HSA-1363331","Reactome:R-HSA-3000335","Reactome:R-HSA-8948709","Reactome:R-HSA-168915","Reactome:R-HSA-5483238","Reactome:R-HSA-182993","Reactome:R-HSA-1169397","Reactome:R-HSA-5668454","Reactome:R-HSA-9793485","Reactome:R-HSA-450358","Reactome:R-HSA-9013974","Reactome:R-HSA-4332236","Reactome:R-HSA-5362412","Reactome:R-HSA-451418","Reactome:R-HSA-9815507","Reactome:R-HSA-1918095","Reactome:R-HSA-3797226","Reactome:R-HSA-174227","Reactome:R-HSA-3781009","Reactome:R-HSA-201425","Reactome:R-HSA-9796387","Reactome:R-HSA-983153","Reactome:R-HSA-9861640","Reactome:R-HSA-2187368","Reactome:R-HSA-1852623","Reactome:R-HSA-9833155","Reactome:R-HSA-5655170","Reactome:R-HSA-180540","Reactome:R-HSA-1169405","Reactome:R-HSA-975147","Reactome:R-HSA-9833973","Reactome:R-HSA-9793679","Reactome:R-HSA-5660753","Reactome:R-HSA-9796626","Reactome:R-HSA-5652009","Reactome:R-HSA-1912357","Reactome:R-HSA-2179276","Reactome:R-HSA-1169394","Reactome:R-HSA-183051","Reactome:R-HSA-2213017","Reactome:R-HSA-5691108","Reactome:R-HSA-5357757","Reactome:R-HSA-174159","Reactome:R-HSA-2737728","Reactome:R-HSA-2186747","Reactome:R-HSA-9688831","Reactome:R-HSA-174104","Reactome:R-HSA-182986","Reactome:R-HSA-1912386","Reactome:R-HSA-2186785","Reactome:R-HSA-9793444","Reactome:R-HSA-2172172","Reactome:R-HSA-202453","Reactome:R-HSA-5607728","Reactome:R-HSA-1358792","Reactome:R-HSA-5668534","Reactome:R-HSA-9645394","Reactome:R-HSA-870449","Reactome:R-HSA-264444","Reactome:R-HSA-741386","Reactome:R-HSA-187575","Reactome:R-HSA-5607725","Reactome:R-HSA-5610745","Reactome:R-HSA-180597","Reactome:R-HSA-5607757","Reactome:R-HSA-9014342","Reactome:R-HSA-9796346","Reactome:R-HSA-209063","Reactome:R-HSA-1169406","Reactome:R-HSA-1253282","Reactome:R-HSA-1980074","Reactome:R-HSA-5205682","Reactome:R-HSA-975118","Reactome:R-HSA-5667107","Reactome:R-HSA-1918092","Reactome:R-HSA-5684250","Reactome:R-HSA-179417","Reactome:R-HSA-2900765","Reactome:R-HSA-9758604","Reactome:R-HSA-8956106","Reactome:R-HSA-75824","Reactome:R-HSA-5693108","Reactome:R-HSA-1980118","Reactome:R-HSA-5675470","Reactome:R-HSA-174195","Reactome:R-HSA-983156","KEGG_REACTION:R03876","Reactome:R-HSA-1977296","Reactome:R-HSA-9013069","Reactome:R-HSA-1169395"],"synonyms":[{"name":"E2","type":"broad"},{"name":"E3","type":"broad"},{"name":"ubiquitin conjugating enzyme activity","type":"narrow"},{"name":"ubiquitin ligase activity","type":"narrow"},{"name":"ubiquitin protein ligase activity","type":"narrow"},{"name":"ubiquitin protein-ligase activity","type":"narrow"},{"name":"ubiquitin-conjugating enzyme activity","type":"narrow"}],"termid":"GO:0004842","terms_by_termid":{"GO:0004842":null,"GO:0034450":null,"GO:0061630":null,"GO:0061631":null,"GO:0140850":null,"GO:0140851":null}}


id: PBO:0047351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box and leucine rich repeat protein 4","termid":"PBO:0047351"}


id: PBO:0081791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 721","termid":"PBO:0081791"}


id: GO:1905551
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to endoplasmic reticulum.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:22768340"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein localization","termid":"GO:1903828"},{"relation_name":"is_a","term_name":"regulation of protein localization to endoplasmic reticulum","termid":"GO:1905550"},{"relation_name":"negatively_regulates","term_name":"protein localization to endoplasmic reticulum","termid":"GO:0070972"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein localization to endoplasmic reticulum","synonyms":[{"name":"down regulation of protein localisation in endoplasmic reticulum","type":"exact"},{"name":"down regulation of protein localization in ER","type":"exact"},{"name":"down regulation of protein localization in endoplasmic reticulum","type":"exact"},{"name":"down regulation of protein localization to endoplasmic reticulum","type":"exact"},{"name":"down-regulation of protein localisation in endoplasmic reticulum","type":"exact"},{"name":"down-regulation of protein localization in ER","type":"exact"},{"name":"down-regulation of protein localization in endoplasmic reticulum","type":"exact"},{"name":"down-regulation of protein localization to endoplasmic reticulum","type":"exact"},{"name":"downregulation of protein localisation in endoplasmic reticulum","type":"exact"},{"name":"downregulation of protein localization in ER","type":"exact"},{"name":"downregulation of protein localization in endoplasmic reticulum","type":"exact"},{"name":"downregulation of protein localization to endoplasmic reticulum","type":"exact"},{"name":"inhibition of protein localisation in endoplasmic reticulum","type":"narrow"},{"name":"inhibition of protein localization in ER","type":"narrow"},{"name":"inhibition of protein localization in endoplasmic reticulum","type":"narrow"},{"name":"inhibition of protein localization to endoplasmic reticulum","type":"narrow"},{"name":"negative regulation of protein localisation in endoplasmic reticulum","type":"exact"},{"name":"negative regulation of protein localization in ER","type":"exact"},{"name":"negative regulation of protein localization in endoplasmic reticulum","type":"exact"}],"termid":"GO:1905551"}


id: GO:0034400
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A plastid found in senescing, formerly green tissues that is derived from a chloroplast that undergoes an organized developmental program of senescence.","definition_xrefs":["PMID:24668747","PMID:12654863"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid","termid":"GO:0009536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"gerontoplast","termid":"GO:0034400"}


id: FYPO:0006664
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed during G0 phase in which the nucleus is longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated nucleus","termid":"FYPO:0006663"},{"relation_name":"is_a","term_name":"abnormal nuclear morphology during G0","termid":"FYPO:0006667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0002403"],"is_obsolete":false,"name":"elongated nucleus during G0","synonyms":[{"name":"elongated nuclei during G0","type":"exact"},{"name":"elongated nucleus during cell quiescence","type":"exact"},{"name":"elongated nucleus during quiescence","type":"exact"},{"name":"long nucleus during G0","type":"exact"}],"termid":"FYPO:0006664"}


id: PBO:0055769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA PDCD5 and p53 scaffold","termid":"PBO:0055769"}


id: PBO:0068573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 24, pseudogene","termid":"PBO:0068573"}


id: GO:0046860
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a glycosome.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peroxisomal membrane","termid":"GO:0005778"},{"relation_name":"part_of","term_name":"glycosome","termid":"GO:0020015"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005777"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0005777"],"is_obsolete":false,"name":"glycosome membrane","termid":"GO:0046860"}


id: PBO:0080884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"yrdC N6-threonylcarbamoyltransferase domain containing","termid":"PBO:0080884"}


id: PBO:0063357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Purkinje cell protein 2","termid":"PBO:0063357"}


id: GO:0033312
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways leading to the formation of chlorophyll a, via the intermediate geranylgeranyl-chlorophyll a.","definition_xrefs":["MetaCyc:PWY-5064","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chlorophyll a biosynthetic process","termid":"GO:0033305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"chlorophyll a biosynthetic process via geranylgeranyl-chlorophyll a","synonyms":[{"name":"chlorophyll a anabolism via geranylgeranyl-chlorophyll a","type":"exact"},{"name":"chlorophyll a biosynthesis via geranylgeranyl-chlorophyll a","type":"exact"},{"name":"chlorophyll a formation via geranylgeranyl-chlorophyll a","type":"exact"},{"name":"chlorophyll a synthesis via geranylgeranyl-chlorophyll a","type":"exact"}],"termid":"GO:0033312"}


id: GO:0048347
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of paraxial mesoderm cell fate determination.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of mesodermal cell fate determination","termid":"GO:0048335"},{"relation_name":"is_a","term_name":"regulation of paraxial mesodermal cell fate determination","termid":"GO:0048345"},{"relation_name":"negatively_regulates","term_name":"paraxial mesodermal cell fate determination","termid":"GO:0048344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of paraxial mesodermal cell fate determination","synonyms":[{"name":"down regulation of paraxial mesodermal cell fate determination","type":"exact"},{"name":"down-regulation of paraxial mesodermal cell fate determination","type":"exact"},{"name":"downregulation of paraxial mesodermal cell fate determination","type":"exact"},{"name":"inhibition of paraxial mesodermal cell fate determination","type":"narrow"}],"termid":"GO:0048347"}


id: PBO:0001922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"manganese superoxide dismutase (predicted)","termid":"PBO:0001922"}


id: GO:0033582
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The addition of a galactose unit to a protein amino acid in the cytosol.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete protein galactosylation in cytosol (obsolete GO:0033582)","synonyms":[{"name":"protein amino acid galactosylation in cytosol","type":"exact"}],"termid":"GO:0033582"}


id: FYPO:0004689
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA transcribed from cenH measured in a cell is higher than normal. cenH is a region located between mat2-P and mat3-M that is homologous to centromeric repeats, and that produces non-coding RNAs and small interfering RNAs.","definition_xrefs":["PMID:21253571","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased centromeric transcript level","termid":"FYPO:0004982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0006551","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased cenH-derived RNA level","synonyms":[{"name":"increased cenH RNA level","type":"exact"},{"name":"increased cenH-derived RNA accumulation","type":"related"},{"name":"accumulation of cenH-derived RNA transcripts","type":"related"},{"name":"increased cenH-derived RNA level during mitotic cell cycle","type":"related"},{"name":"increased cenH-derived RNA level during vegetative growth","type":"exact"},{"name":"increased cenH-derived RNA transcript level","type":"exact"}],"termid":"FYPO:0004689"}


id: FYPO:0006384
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of endocytosis is decreased when the cell is subject to nitrogen starvation. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal endocytosis","termid":"FYPO:0003886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"decreased rate of endocytosis during nitrogen starvation","synonyms":[{"name":"decreased rate of actin-mediated endocytosis during nitrogen starvation","type":"exact"},{"name":"decreased rate of endocytosis during nitrogen depletion","type":"exact"},{"name":"decreased rate of endocytosis during nitrogen deprivation","type":"exact"},{"name":"decreased rate of protein internalization during nitrogen starvation","type":"narrow"},{"name":"reduced rate of endocytosis during nitrogen starvation","type":"exact"}],"termid":"FYPO:0006384"}


id: PBO:0078757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA methyltransferase activator subunit 11-2","termid":"PBO:0078757"}


id: GO:0140075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that controls lipoprotein transport.","definition_xrefs":["PMID:26501192","GOC:BHF_miRNA","GOC:RPH","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein transport","termid":"GO:0051223"},{"relation_name":"regulates","term_name":"lipoprotein transport","termid":"GO:0042953"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of lipoprotein transport","termid":"GO:0140075"}


id: PBO:0034150
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-is_vector_for","termid":"PBO:0034150"}


id: PBO:0026646
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_8-oxo-7,8-dihydroguanine_DNA_N-glycosylase_activity","termid":"PBO:0026646"}


id: PBO:0005157
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Calnexin Independence Factor","termid":"PBO:0005157"}


id: PBO:0081735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 667","termid":"PBO:0081735"}


id: GO:0004298
data:
  {"annotated_genes":["SJAG_03151","SJAG_01014","SJAG_05351","SJAG_04969"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90103,93806,96314,106785],"is_not":false,"summary":null,"term":"GO:0004298"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endopeptidase activity","termid":"GO:0004175"},{"relation_name":"is_a","term_name":"threonine-type peptidase activity","termid":"GO:0070003"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01014":null,"SJAG_03151":null,"SJAG_04969":null,"SJAG_05351":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0008233","GO:0003824","GO:0016787","GO:0003674","GO:0140096"],"is_obsolete":false,"name":"threonine-type endopeptidase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:3.4.25.-","Reactome:R-HSA-9818577","Reactome:R-HSA-9818574"],"synonyms":[{"name":"26S protease","type":"related"},{"name":"MCP","type":"related"},{"name":"alkaline protease","type":"related"},{"name":"ingensin","type":"related"},{"name":"large multicatalytic protease","type":"narrow"},{"name":"lens neutral proteinase","type":"narrow"},{"name":"multicatalytic endopeptidase complex","type":"related"},{"name":"multicatalytic proteinase","type":"narrow"},{"name":"multicatalytic proteinase (complex)","type":"narrow"},{"name":"prosome","type":"related"},{"name":"proteasome endopeptidase complex","type":"narrow"},{"name":"threonine endopeptidase activity","type":"exact"},{"name":"tricorn protease","type":"narrow"},{"name":"tricorn proteinase","type":"narrow"}],"termid":"GO:0004298","terms_by_termid":{"GO:0004298":null}}


id: GO:0075223
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of sporangium germination.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sporangium development","termid":"GO:0075310"},{"relation_name":"regulates","term_name":"sporangium germination","termid":"GO:0075222"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of sporangium germination","synonyms":[{"name":"modulation of sporangium germination","type":"narrow"},{"name":"modulation of sporangium germination on or near host","type":"narrow"}],"termid":"GO:0075223"}


id: PBO:0084036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI-anchored cell wall protein involved in export of sterols; redundant role with PRY1 and PRY2 in the export of free fatty acids; role in mating efficiency; expression of full-length transcript is daughter cell-specific; in response to alpha factor, a short transcript starting at +452 is expressed and the long form is repressed by Ste12p; member of the CAP protein superfamily (cysteine-rich secretory proteins (CRISP), antigen 5, and pathogenesis related 1 proteins)","termid":"PBO:0084036"}


id: PBO:0067498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 634, pseudogene","termid":"PBO:0067498"}


id: PBO:0061395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nephronectin","termid":"PBO:0061395"}


id: PBO:0061719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NUT family member 2D","termid":"PBO:0061719"}


id: PBO:0068126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 433","termid":"PBO:0068126"}


id: PBO:0092002
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"this gene is located in the silent mating type region mat2 and is therefore not expressed. It is only transcribed when at the mat1 locus, which is the mating type configuration of h+ cells. The S. pombe reference strain is h- mating type and express h- specific mating genes from the mat1 locus. The silenced mat2 genes are therefore annotated with mat1 h+ specific information","termid":"PBO:0092002"}


id: PBO:0051746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrator complex subunit 12","termid":"PBO:0051746"}


id: GO:0032342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of aldosterone, a corticosteroid hormone that is produced by the zona glomerulosa of the adrenal cortex and regulates salt (sodium and potassium) and water balance.","definition_xrefs":["PMID:16527843"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C21-steroid hormone biosynthetic process","termid":"GO:0006700"},{"relation_name":"is_a","term_name":"mineralocorticoid biosynthetic process","termid":"GO:0006705"},{"relation_name":"is_a","term_name":"aldosterone metabolic process","termid":"GO:0032341"},{"relation_name":"is_a","term_name":"primary alcohol biosynthetic process","termid":"GO:0034309"},{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"aldehyde biosynthetic process","termid":"GO:0046184"},{"relation_name":"is_a","term_name":"olefinic compound biosynthetic process","termid":"GO:0120255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"aldosterone biosynthetic process","termid":"GO:0032342"}


id: PBO:0055213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2639","termid":"PBO:0055213"}


id: PBO:0086027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; YBR259W is not an essential gene; forms cytoplasmic foci upon DNA replication stress","termid":"PBO:0086027"}


id: PBO:0044082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer/testis antigen family 45 member A1","termid":"PBO:0044082"}


id: SO:0001300
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"N6_isopentenyladenosine is a modified adenosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_adenosine","termid":"SO:0001273"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N6_isopentenyladenosine","secondary_identifiers":["RNAMOD:006"],"synonyms":[{"name":"N6 isopentenyladenosine","type":"exact"},{"name":"N6-isopentenyladenosine","type":"exact"},{"name":"i6A","type":"exact"}],"termid":"SO:0001300"}


id: GO:0102498
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + maltose = 2 glucose.","definition_xrefs":["GOC:pz","PMID:16343940"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-glucosidase activity","termid":"GO:0090599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016798","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"maltose glucosidase activity","secondary_identifiers":["MetaCyc:RXN-15910"],"termid":"GO:0102498"}


id: GO:1990257
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cytoplasmic dense-core vesicle that transports a range of proteins including piccolo, bassoon, N-cadherin and syntaxin. The transported proteins may be associated with the external side of the vesicle, rather than being contained within the vesicle, therefore forming an aggregate of vesicle and proteins. Piccolo-bassoon transport vesicles (or PTVs) range in size from approximately 80 nm in diameter for dense core vesicles to 130 nm by 220 nm in area for aggregates. They are packaged via the trans-Golgi network before being transported through the axon.","definition_xrefs":["PMID:21569270","GOC:dr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport vesicle","termid":"GO:0030133"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0031410","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"piccolo-bassoon transport vesicle","synonyms":[{"name":"PTV","type":"related"}],"termid":"GO:1990257"}


id: PBO:0067089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 125, pseudogene","termid":"PBO:0067089"}


id: PBO:0074204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 39 member 13","termid":"PBO:0074204"}


id: PBO:0034485
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_level_during_meiosis_I","termid":"PBO:0034485"}


id: GO:0008404
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of an NADPH- and oxygen-dependent reaction that converts arachidonic acid to cis-14,15-epoxyeicosatrienoic acid.","definition_xrefs":["PMID:10681399","RHEA:51472"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arachidonic acid epoxygenase activity","termid":"GO:0008392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"arachidonic acid 14,15-epoxygenase activity","synonyms":[{"name":"cytochrome P450 CYP2C29","type":"narrow"},{"name":"cytochrome P450 CYP2C39","type":"narrow"}],"termid":"GO:0008404"}


id: GO:0071855
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a neuropeptide receptor.","definition_xrefs":["GOC:mah","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor binding","termid":"GO:0001664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"neuropeptide receptor binding","termid":"GO:0071855"}


id: PBO:0089281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall 1,3-beta-glucanosyltransferase Gas2","termid":"PBO:0089281"}


id: GO:0001935
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell proliferation","termid":"GO:0050673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endothelial cell proliferation","termid":"GO:0001935"}


id: GO:0015119
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of hexose phosphate from one side of a membrane to the other. Hexose phosphates is any of a group of monophosphorylated aldoses with a chain of six carbon atoms in the molecule.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organophosphate ester transmembrane transporter activity","termid":"GO:0015605"},{"relation_name":"is_a","term_name":"carbohydrate derivative transmembrane transporter activity","termid":"GO:1901505"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"hexose phosphate transmembrane transporter activity","termid":"GO:0015119"}


id: GO:0008548
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. Activity is associated with the signal-recognition particle, a protein and RNA-containing structure involved in endoplasmic reticulum-associated protein synthesis.","definition_xrefs":["MetaCyc:3.6.1.49-RXN","EC:3.6.5.4"],"gene_count":0,"genotype_count":0,"name":"obsolete signal-recognition-particle GTPase activity (obsolete GO:0008548)","synonyms":[{"name":"signal-recognition-particle GTPase activity","type":"exact"}],"termid":"GO:0008548"}


id: GO:0140497
data:
  {"annotated_genes":["SJAG_04770","SJAG_01276","SJAG_04095","SJAG_00816"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[83660,93984,101002,114057],"is_not":false,"summary":null,"term":"GO:0140497"}]},"cv_name":"cellular_component","definition":"A complex with alpha-(1->6)-mannosyltransferase activity, located in the cis Golgi membrane; adds mannan to N-linked glycans on proteins as part of the elongation of alpha 1,6-linked Man backbone. In S. cerevisiae, contains Mnn9p, Anp1p, Mnn10p, Mnn11p, and Hoc1p.","definition_xrefs":["PMID:9430634"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannan polymerase complex","termid":"GO:0000136"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00816":null,"SJAG_01276":null,"SJAG_04095":null,"SJAG_04770":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991","GO:0005794"],"is_obsolete":false,"name":"mannan polymerase II complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140497","terms_by_termid":{"GO:0140497":null}}


id: PBO:0047182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 200 member C","termid":"PBO:0047182"}


id: PBO:0018282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT III complex subunit Cmp7 (predicted)","termid":"PBO:0018282"}


id: PBO:0054037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1372","termid":"PBO:0054037"}


id: PBO:0000299
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"corrected strand","termid":"PBO:0000299"}


id: PBO:0030692
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_glutathione_disulfide_level","termid":"PBO:0030692"}


id: PBO:0065250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 20C","termid":"PBO:0065250"}


id: GO:0007297
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of an ovarian follicle cell that takes place during oogenesis. During egg chamber formation, follicle cells migrate to envelop the germ-line cysts and move in between cysts. At stage 10B, follicle cells migrate centripetally between the nurse cells and the oocyte, enclosing the anterior of the egg. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:mtg_sensu","PMID:10822261"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell migration","termid":"GO:0010631"},{"relation_name":"part_of","term_name":"follicle cell of egg chamber development","termid":"GO:0030707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"follicle cell of egg chamber migration","synonyms":[{"name":"follicle cell migration","type":"broad"}],"termid":"GO:0007297"}


id: GO:0010085
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process resulting in the establishment of polarity along the proximal/distal axis.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of axis polarity","termid":"GO:0065001"},{"relation_name":"part_of","term_name":"proximal/distal axis specification","termid":"GO:0009946"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"polarity specification of proximal/distal axis","termid":"GO:0010085"}


id: GO:0071533
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by an ankyrin repeat interaction.","definition_xrefs":["GOC:amm","InterPro:IPR002110"],"gene_count":0,"genotype_count":0,"name":"obsolete ankyrin repeat-mediated complex assembly (obsolete GO:0071533)","synonyms":[{"name":"ANK repeat-mediated complex assembly","type":"exact"}],"termid":"GO:0071533"}


id: GO:0032533
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that modulates the length of a microvillus on a follicle cell.","definition_xrefs":["GOC:sart","PMID:16260500"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell size","termid":"GO:0008361"},{"relation_name":"is_a","term_name":"regulation of follicle cell microvillus organization","termid":"GO:0032531"},{"relation_name":"is_a","term_name":"regulation of microvillus length","termid":"GO:0032532"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of follicle cell microvillus length","termid":"GO:0032533"}


id: GO:1901635
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of maintenance of presynaptic active zone structure.","definition_xrefs":["PMID:22426000","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of maintenance of presynaptic active zone structure (obsolete GO:1901635)","synonyms":[{"name":"regulation of maintenance of presynaptic active zone structure","type":"exact"}],"termid":"GO:1901635"}


id: PBO:0043718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6B1 pseudogene 6","termid":"PBO:0043718"}


id: PBO:0038994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"androgen dependent TFPI regulating protein","termid":"PBO:0038994"}


id: GO:0032363
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of FMN, riboflavin 5'-(dihydrogen phosphate), a coenzyme for a number of oxidative enzymes including NADH dehydrogenase.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoside monophosphate catabolic process","termid":"GO:0009158"},{"relation_name":"is_a","term_name":"ribonucleotide catabolic process","termid":"GO:0009261"},{"relation_name":"is_a","term_name":"flavin-containing compound catabolic process","termid":"GO:0042728"},{"relation_name":"is_a","term_name":"FMN metabolic process","termid":"GO:0046444"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"FMN catabolic process","termid":"GO:0032363"}


id: SO:0000046
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"To insert a subsection of sequence.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000046 insert (obsolete SO:0000046)","termid":"SO:0000046"}


id: GO:1990125
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A homotetrameric protein complex consisting of a symmetrical pair of DiaA homodimers. Facilitates DnaA binding to the origin of replication during replication initiation.","definition_xrefs":["GOC:bhm","PMID:17699754"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"DiaA complex","synonyms":[{"name":"DiaA homotetramer","type":"exact"}],"termid":"GO:1990125"}


id: PBO:0075868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSX family pseudogene 8","termid":"PBO:0075868"}


id: GO:0061910
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an autophagosome fuses with an endosome to create an intermediate autophagic organelle called amphisome.","definition_xrefs":["PMID:24219988"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle fusion","termid":"GO:0006906"},{"relation_name":"part_of","term_name":"macroautophagy","termid":"GO:0016236"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0006914"}],"interesting_parent_ids":["GO:0061024","GO:0006810","GO:0044248","GO:0006914","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"autophagosome-endosome fusion","termid":"GO:0061910"}


id: PBO:0043783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxypeptidase B2","termid":"PBO:0043783"}


id: GO:0004716
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Conveys a signal from an upstream receptor or intracellular signal transducer by catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate.","definition_xrefs":["EC:2.7.10.2"],"gene_count":0,"genotype_count":0,"name":"obsolete signal transducer, downstream of receptor, with protein tyrosine kinase activity (obsolete GO:0004716)","secondary_identifiers":["EC:2.7.10.-"],"synonyms":[{"name":"receptor signaling protein tyrosine kinase activity","type":"exact"},{"name":"receptor signalling protein tyrosine kinase activity","type":"exact"}],"termid":"GO:0004716"}


id: PBO:0051252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable (III)-13-1 (pseudogene)","termid":"PBO:0051252"}


id: PBO:0089078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein associated with stress granule","termid":"PBO:0089078"}


id: PBO:0040671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"B cell receptor associated protein 29","termid":"PBO:0040671"}


id: GO:0034512
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a box C/D small nucleolar RNA.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snoRNA binding","termid":"GO:0030515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003723"],"is_obsolete":false,"name":"box C/D sno(s)RNA binding","synonyms":[{"name":"box C/D sRNA binding","type":"narrow"},{"name":"box C/D snoRNA binding","type":"narrow"}],"termid":"GO:0034512"}


id: GO:0031919
data:
  {"annotated_genes":["SJAG_02152","SJAG_03808","SJAG_02962","SJAG_03652"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86271,113495,86270,114755],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903090"},{"annotations":[86272,86273,113496,114756],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903091"},{"annotations":[113497,114757,86275,86274],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903092"}]},"cv_name":"biological_process","definition":"The directed movement of any of the vitamin B6 compounds -- pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate -- into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin transport","termid":"GO:0051180"},{"relation_name":"is_a","term_name":"organic substance transport","termid":"GO:0071702"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02152":null,"SJAG_02962":null,"SJAG_03652":null,"SJAG_03808":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"vitamin B6 transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0031919","terms_by_termid":{"GO:1903090":null,"GO:1903091":null,"GO:1903092":null}}


id: PBO:0051975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IZUMO family member 2","termid":"PBO:0051975"}


id: PBO:0086258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that regulates meiotic SPB cohesion and telomere clustering; localizes to both spindle pole bodies (SPBs) and telomeres; required for bouquet formation, effective homolog pairing, ordered cross-over distribution, sister chromatid cohesion at meiotic telomeres, chromosomal segregation and telomere-led rapid prophase movement","termid":"PBO:0086258"}


id: PBO:0074589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 5A","termid":"PBO:0074589"}


id: FYPO:0005019
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle phenotype observed in the vegetative growth phase of the life cycle in which the duration of septum assembly is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal septum assembly","termid":"FYPO:0000673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal duration of septum assembly","synonyms":[{"name":"normal duration of division septum assembly","type":"exact"},{"name":"normal duration of septation","type":"broad"},{"name":"normal duration of septum assembly during mitotic cell cycle","type":"related"},{"name":"normal duration of septum assembly during vegetative growth","type":"exact"}],"termid":"FYPO:0005019"}


id: GO:0070100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of a chemokine-mediated signaling pathway.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine-mediated signaling pathway","termid":"GO:0001960"},{"relation_name":"is_a","term_name":"negative regulation of G protein-coupled receptor signaling pathway","termid":"GO:0045744"},{"relation_name":"is_a","term_name":"regulation of chemokine-mediated signaling pathway","termid":"GO:0070099"},{"relation_name":"negatively_regulates","term_name":"chemokine-mediated signaling pathway","termid":"GO:0070098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of chemokine-mediated signaling pathway","synonyms":[{"name":"negative regulation of chemokine-mediated signalling pathway","type":"exact"}],"termid":"GO:0070100"}


id: PBO:0059165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inner membrane protein MPV17","termid":"PBO:0059165"}


id: SO:0001826
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An inframe decrease in cds length that deletes bases from the coding sequence starting within an existing codon.","definition_xrefs":["EBI:gr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inframe_deletion","termid":"SO:0001822"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"disruptive_inframe_deletion","secondary_identifiers":["http://snpeff.sourceforge.net/SnpEff_manual.html"],"synonyms":[{"name":"Jannovar:disruptive_inframe_deletion","type":"exact"},{"name":"disruptive decrease in CDS length","type":"exact"},{"name":"disruptive inframe deletion","type":"exact"},{"name":"snpEff:CODON_CHANGE_PLUS_CODON_DELETION","type":"exact"}],"termid":"SO:0001826"}


id: PBO:0043600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colorectal cancer associated 1","termid":"PBO:0043600"}


id: PBO:0058619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6751","termid":"PBO:0058619"}


id: PBO:0000640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF and RSC complex subunit Ssr3","termid":"PBO:0000640"}


id: PBO:0001726
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.2.1.24","termid":"PBO:0001726"}


id: PBO:0044838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 126","termid":"PBO:0044838"}


id: GO:0080024
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving indolebutyric acid, a compound that serves as an active or storage form of the hormone indole-3-acetic acid (an auxin) in many plants.","definition_xrefs":["PMID:18725356"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxin metabolic process","termid":"GO:0009850"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"indole-containing compound metabolic process","termid":"GO:0042430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"indolebutyric acid metabolic process","synonyms":[{"name":"IBA metabolic process","type":"exact"},{"name":"IBA metabolism","type":"exact"},{"name":"indole-3-butyric acid metabolic process","type":"narrow"}],"termid":"GO:0080024"}


id: PBO:0083465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene MRPL38","termid":"PBO:0083465"}


id: GO:0000951
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving the catabolism of branched chain amino acids to produce branched chain alcohols with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When methionine is used as the substrate, 3-methylthiopropanol is produced. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of alcohols, often collectively referred to as fusel alcohols. Depending on the redox state of the cells, carboxylic acid derivatives may be produced instead of alcohols.","definition_xrefs":["GOC:krc","PMID:18281432"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid catabolic process to alcohol via Ehrlich pathway","termid":"GO:0000947"},{"relation_name":"is_a","term_name":"methionine catabolic process","termid":"GO:0009087"},{"relation_name":"is_a","term_name":"sulfur compound biosynthetic process","termid":"GO:0044272"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0044281","GO:0006790","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"methionine catabolic process to 3-methylthiopropanol","termid":"GO:0000951"}


id: GO:0070406
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to glutamine, 2,5-diamino-5-oxopentanoic acid.","definition_xrefs":["GOC:ecd","CHEBI:28300"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid binding","termid":"GO:0031406"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"glutamine binding","termid":"GO:0070406"}


id: GO:0034769
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled breakdown of the basement membrane in the context of a normal process such as imaginal disc eversion.","definition_xrefs":["GOC:sart","PMID:17301221"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix disassembly","termid":"GO:0022617"},{"relation_name":"is_a","term_name":"basement membrane organization","termid":"GO:0071711"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"basement membrane disassembly","secondary_identifiers":["GO:0060881"],"synonyms":[{"name":"basal lamina disassembly","type":"related"}],"termid":"GO:0034769"}


id: PomGeneEx:0000020
data:
  {"annotation_feature_type":"gene","cv_name":"PomGeneExProt","definition":"A gene expression qualifier that indicates that a protein is present at the same level under one set of conditions or at one indicated time as otherwise.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"unchanged","termid":"PomGeneEx:0000004"},{"relation_name":"is_a","term_name":"protein expression level","termid":"PomGeneEx:0000010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein level unchanged","synonyms":[{"name":"protein expression unchanged","type":"exact"},{"name":"unchanged protein level","type":"exact"}],"termid":"PomGeneEx:0000020"}


id: PBO:0078863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily C member 7","termid":"PBO:0078863"}


id: SO:0000414
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute to describe a feature that is invalidated due to genomic contamination.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"invalidated","termid":"SO:0000790"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"invalidated_by_genomic_contamination","synonyms":[{"name":"invalidated by genomic contamination","type":"exact"}],"termid":"SO:0000414"}


id: GO:0090499
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pimelyl-[acyl-carrier protein] methyl ester + H2O = pimelyl-[acyl-carrier protein] + methanol.","definition_xrefs":["EC:3.1.1.85","PMID:23045647"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016788","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"pimelyl-[acyl-carrier protein] methyl ester esterase activity","synonyms":[{"name":"pimelyl-[acyl-carrier protein] methyl ester hydrolase activity","type":"related"}],"termid":"GO:0090499"}


id: PBO:0044226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cubilin","termid":"PBO:0044226"}


id: PBO:0072257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S20 pseudogene 32","termid":"PBO:0072257"}


id: PBO:0077393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 132A","termid":"PBO:0077393"}


id: GO:0047094
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: O2 + NAD(P)H + 3-hydroxyphenylacetate = H2O + NAD(P)+ + homogentisate.","definition_xrefs":["EC:1.14.13.63"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"3-hydroxyphenylacetate 6-hydroxylase activity","secondary_identifiers":["MetaCyc:1.14.13.63-RXN"],"synonyms":[{"name":"3-hydroxyphenylacetate 6-monooxygenase activity","type":"related"},{"name":"3-hydroxyphenylacetate,NAD(P)H:oxygen oxidoreductase (6-hydroxylating)","type":"related"}],"termid":"GO:0047094"}


id: PR:Q9P7W1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1703.09 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7W1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1703.09 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1703.09","synonyms":[{"name":"Spom972h-SPBC1703.09","type":"exact"}],"termid":"PR:Q9P7W1"}


id: PBO:0041131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTB domain containing 10 pseudogene 1","termid":"PBO:0041131"}


id: MOD:01180
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a glycine residue to 2-hydroxyglycine.","definition_xrefs":["RESID:AA0434","ChEBI:38048","PubMed:17431180","PubMed:16178056","PubMed:17823333"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monohydroxylated residue","termid":"MOD:00425"},{"relation_name":"is_a","term_name":"modified glycine residue","termid":"MOD:00908"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-hydroxyglycine observational artifact","synonyms":[{"name":"2-hydroxyglycine","type":"exact"},{"name":"2HyGly","type":"exact"},{"name":"alpha-hydroxyglycine","type":"exact"},{"name":"amino(hydroxy)acetic acid","type":"exact"},{"name":"aminohydroxyacetic acid","type":"exact"}],"termid":"MOD:01180"}


id: GO:0009688
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid.","definition_xrefs":["ISBN:0387969845"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abscisic acid metabolic process","termid":"GO:0009687"},{"relation_name":"is_a","term_name":"sesquiterpenoid biosynthetic process","termid":"GO:0016106"},{"relation_name":"is_a","term_name":"apocarotenoid biosynthetic process","termid":"GO:0043289"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"},{"relation_name":"is_a","term_name":"olefinic compound biosynthetic process","termid":"GO:0120255"},{"relation_name":"is_a","term_name":"tertiary alcohol biosynthetic process","termid":"GO:1902645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"abscisic acid biosynthetic process","secondary_identifiers":["MetaCyc:PWY-695"],"synonyms":[{"name":"abscisic acid anabolism","type":"exact"},{"name":"abscisic acid biosynthesis","type":"exact"},{"name":"abscisic acid formation","type":"exact"},{"name":"abscisic acid synthesis","type":"exact"}],"termid":"GO:0009688"}


id: PBO:0069247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 502, pseudogene","termid":"PBO:0069247"}


id: GO:1903716
data:
  {"annotated_genes":["SJAG_00760","SJAG_03777"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108602],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098710"},{"annotations":[111198],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140140"}]},"cv_name":"biological_process","definition":"The process in which guanine is transported across a membrane.","definition_xrefs":["PMID:14998997","GOC:TermGenie","GO_REF:0000069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanine transport","termid":"GO:0015854"},{"relation_name":"is_a","term_name":"purine nucleobase transmembrane transport","termid":"GO:1904823"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00760":null,"SJAG_03777":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"guanine transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1903716","terms_by_termid":{"GO:0098710":null,"GO:0140140":null}}


id: PBO:0057633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1208","termid":"PBO:0057633"}


id: GO:0090211
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of the establishment of the blood-brain barrier, a selectively permeable structural and functional barrier that exists between the capillaries and the brain.","definition_xrefs":["GOC:tb","GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell development","termid":"GO:0010720"},{"relation_name":"is_a","term_name":"regulation of establishment of blood-brain barrier","termid":"GO:0090210"},{"relation_name":"positively_regulates","term_name":"establishment of blood-brain barrier","termid":"GO:0060856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of establishment of blood-brain barrier","synonyms":[{"name":"positive regulation of establishment of BBB","type":"exact"}],"termid":"GO:0090211"}


id: PBO:0081439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 292","termid":"PBO:0081439"}


id: PBO:0109122
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycoside Hydrolase family Sixteen","termid":"PBO:0109122"}


id: PBO:0082663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the cleavage and polyadenylation factor I (CF I); CF 1, composed of the CF 1A complex (Rna14p, Rna15p, Clp1p, Pcf11p) and Hrp1, is involved in cleavage and polyadenylation of mRNA 3' ends; involved in both the endonucleolyitc cleavage and polyadenylation steps of mRNA 3'-end maturation and in gene looping which affects reinitiation of transcription; mutations in human ortholog cause cerebellar neurodegeneration","termid":"PBO:0082663"}


id: PBO:0004031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor complex subunit Iws1 (predicted)","termid":"PBO:0004031"}


id: PBO:0003612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIM23 translocase complex subunit Tim50 (predicted)","termid":"PBO:0003612"}


id: PBO:0085858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; relocalizes from nucleus to nucleolus upon DNA replication stress","termid":"PBO:0085858"}


id: FYPO:0005375
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of meiotic recombination between alleles of one sister chromatid (intra-sister recombination) or between alleles on different sister chromatids (inter-sister recombination) is decreased.","definition_xrefs":["PomBase:mah","PMID:11726502"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased meiotic recombination","termid":"FYPO:0000485"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0000293","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased sister chromatid meiotic recombination","synonyms":[{"name":"reduced sister chromatid meiotic recombination","type":"exact"}],"termid":"FYPO:0005375"}


id: PBO:0041025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BPI fold containing family C","termid":"PBO:0041025"}


id: PBO:0074255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier organic anion transporter family member 1C1","termid":"PBO:0074255"}


id: GO:0002314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a B cell in the spleen acquires the specialized features of a germinal center B cell. Germinal center B cells are rapidly cycling B cells which have downregulated IgD expression and exhibit high levels of binding by peanut agglutinin (PNA).","definition_xrefs":["GOC:jal","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mature B cell differentiation involved in immune response","termid":"GO:0002313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"germinal center B cell differentiation","synonyms":[{"name":"germinal center B cell development","type":"related"},{"name":"germinal center B lymphocyte differentiation","type":"exact"},{"name":"germinal center B-cell differentiation","type":"exact"},{"name":"germinal center B-lymphocyte differentiation","type":"exact"}],"termid":"GO:0002314"}


id: PBO:0043947
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crystallin beta A2","termid":"PBO:0043947"}


id: SO:0000270
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tRNA sequence that has a threonine anticodon, and a 3' threonine binding region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"threonine_tRNA_primary_transcript","termid":"SO:0000227"},{"relation_name":"is_a","term_name":"tRNA","termid":"SO:0000253"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"threonyl_tRNA","synonyms":[{"name":"threonyl tRNA","type":"exact"},{"name":"threonyl-transfer RNA","type":"related"},{"name":"threonyl-transfer ribonucleic acid","type":"exact"}],"termid":"SO:0000270"}


id: PBO:0087782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit VII of cytochrome c oxidase (Complex IV); Complex IV is the terminal member of the mitochondrial inner membrane electron transport chain","termid":"PBO:0087782"}


id: GO:1904144
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of phosphatidylinositol phosphate phosphatase activity.","definition_xrefs":["GO_REF:0000088","GOC:TermGenie","GOC:bhm","PMID:12525165"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase complex","termid":"GO:1903293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"phosphatidylinositol phosphate phosphatase complex","synonyms":[{"name":"prostatic acid phosphatase complex","type":"narrow"}],"termid":"GO:1904144"}


id: PBO:0034248
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_syntenic_orthology_relationship_with","termid":"PBO:0034248"}


id: PBO:0054611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2016","termid":"PBO:0054611"}


id: PBO:0069393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 653, pseudogene","termid":"PBO:0069393"}


id: GO:0099181
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The action of a molecule that contributes to the structural integrity of a presynapse.","definition_xrefs":["PMID:23751498","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structural constituent of synapse","termid":"GO:0098918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005198"}],"interesting_parent_ids":["GO:0005198","GO:0003674"],"is_obsolete":false,"name":"structural constituent of presynapse","termid":"GO:0099181"}


id: PBO:0030568
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_glycine_level","termid":"PBO:0030568"}


id: GO:0039603
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Selective and non-covalent interaction of a viral protein with a member of the class of TATA-binding proteins (TBP) in the host, including any of the TBP-related factors (TRFs), which contributes to the viral-suppression of assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a host DNA template.","definition_xrefs":["GOC:vw","PMID:11968006"],"gene_count":0,"genotype_count":0,"name":"obsolete TBP-class protein binding involved in viral suppression of host transcription initiation from RNA polymerase II promoter (obsolete GO:0039603)","termid":"GO:0039603"}


id: GO:1902280
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of ATP-dependent RNA helicase activity.","definition_xrefs":["GOC:rb","PMID:23721653","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of helicase activity","termid":"GO:0051095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of RNA helicase activity","synonyms":[{"name":"regulation of ATP-dependent RNA helicase activity","type":"exact"}],"termid":"GO:1902280"}


id: FYPO:0005853
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which filamentous actin (F-actin) is present in the cytoplasm in the form of dense, irregularly shaped aggregates.","definition_xrefs":["PomBase:mah","PMID:12764130"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton morphology during vegetative growth","termid":"FYPO:0000350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0004803"],"is_obsolete":false,"name":"aggregated filamentous actin in cytoplasm","synonyms":[{"name":"F-actin accumulation in cytoplasm","type":"related"},{"name":"aggregated F- actin in cytoplasm","type":"exact"},{"name":"aggregated cytoplasmic F-actin","type":"exact"},{"name":"aggregated cytoplasmic filamentous actin","type":"exact"},{"name":"aggregated filamentous actin in cytoplasm during mitotic cell cycle","type":"related"},{"name":"aggregated filamentous actin in cytoplasm during vegetative growth","type":"exact"}],"termid":"FYPO:0005853"}


id: GO:0021723
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the medullary reticular formation over time, from its formation to the mature structure. The medullary reticular formation is a series of brain nuclei located in the medulla oblongata.","definition_xrefs":["GOC:curators","Wikipedia:Rhombencephalon","GOC:cls","GOC:dph","GOC:cjm","GO_REF:0000021","GOC:dgh","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"medulla oblongata development","termid":"GO:0021550"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"medullary reticular formation development","synonyms":[{"name":"rhombencephalic reticular formation development","type":"broad"}],"termid":"GO:0021723"}


id: PBO:0044861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DAP3 binding cell death enhancer 1","termid":"PBO:0044861"}


id: PBO:0067250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 323, pseudogene","termid":"PBO:0067250"}


id: FYPO:0002179
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which a microcolony forms, all cells in the population are inviable and have abnormal morphology (i.e. size, shape, or structure), some cells may divide, and some cells are longer than normal.","definition_xrefs":["PomBase:mah","PomBase:jh"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable mixed population, vegetative cells with abnormal morphology, including long cells (obsolete FYPO:0002179)","synonyms":[{"name":"inviable microcolony of vegetative cells with abnormal morphology, including long cells","type":"exact"}],"termid":"FYPO:0002179"}


id: PR:O94640
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sir2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NAD-dependent histone deacetylase sir2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16D10.07c","synonyms":[{"name":"Spom972h-sir2","type":"exact"},{"name":"regulatory protein sir2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"silent information regulator 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94640"}


id: PBO:0002553
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.3.1.51","termid":"PBO:0002553"}


id: PBO:0060813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nebulin","termid":"PBO:0060813"}


id: GO:0015283
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. This term was not defined before being made obsolete.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"gene_count":0,"genotype_count":0,"name":"obsolete apoptogenic cytochrome c release channel activity (obsolete GO:0015283)","synonyms":[{"name":"Bcl-2","type":"narrow"},{"name":"apoptogenic cytochrome c release channel activity","type":"exact"}],"termid":"GO:0015283"}


id: PBO:0001680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division control protein, splicing factor Cdc5","termid":"PBO:0001680"}


id: PBO:0074352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"structural maintenance of chromosomes 1B","termid":"PBO:0074352"}


id: GO:0098633
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a collagen fibril.","definition_xrefs":["GOC:dos","PMID:21421911"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix binding","termid":"GO:0050840"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"collagen fibril binding","termid":"GO:0098633"}


id: PBO:0074739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 99","termid":"PBO:0074739"}


id: GO:0055067
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involved in the maintenance of an internal steady state of monovalent inorganic cations within an organism or cell.","definition_xrefs":["GOC:jid","GOC:mah","GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete monovalent inorganic cation homeostasis (obsolete GO:0055067)","termid":"GO:0055067"}


id: PATO:0000066
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A texture quality inhering in a bearer by virtue of the bearer's having hair or bristles.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"texture","termid":"PATO:0000150"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pilosity","termid":"PATO:0000066"}


id: GO:0007469
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the antenna over time, from its formation to the mature structure. The antenna are the sensory structures on the head that are capable of detecting various environmental stimuli.","direct_ancestors":[{"relation_name":"is_a","term_name":"imaginal disc-derived appendage morphogenesis","termid":"GO:0035114"},{"relation_name":"part_of","term_name":"eye-antennal disc development","termid":"GO:0035214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antennal development","termid":"GO:0007469"}


id: PBO:0003345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF3 alpha subunit (p135) (predicted)","termid":"PBO:0003345"}


id: PATO:0001657
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A osmolarity which is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"osmolarity","termid":"PATO:0001655"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased osmolarity","synonyms":[{"name":"high osmolarity","type":"exact"}],"termid":"PATO:0001657"}


id: PBO:0051389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda constant 6","termid":"PBO:0051389"}


id: PBO:0077637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMX2-CTNND1 readthrough (NMD candidate)","termid":"PBO:0077637"}


id: PBO:0054097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1450","termid":"PBO:0054097"}


id: PBO:0082862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Core Sm protein Sm D1; part of heteroheptameric complex (with Smb1p, Smd2p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; relocalizes to the cytosol in response to hypoxia; homolog of human Sm D1; protein abundance increases in response to DNA replication stress","termid":"PBO:0082862"}


id: GO:0035421
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase kinase in the context of an innate immune response, a defense response mediated by germline encoded components that directly recognize components of potential pathogens.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete activation of MAPKK activity involved in innate immune response (obsolete GO:0035421)","termid":"GO:0035421"}


id: GO:0005671
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A multiprotein complex that possesses histone acetyltransferase and is involved in regulation of transcription. Contains either GCN5 or PCAF in a mutually exclusive manner. The budding yeast complex includes Gcn5p, two proteins of the Ada family, and two TBP-associate proteins (TAFs); analogous complexes in other species have analogous compositions, and usually contain homologs of the yeast proteins. Both ATAC- or SAGA (see GO:0000124, SAGA complex) are involved in the acetylation of histone H3K9 and K14 residues.","definition_xrefs":["PMID:10637607"],"gene_count":0,"genotype_count":0,"name":"obsolete Ada2/Gcn5/Ada3 transcription activator complex (obsolete GO:0005671)","synonyms":[{"name":"ATAC complex","type":"related"}],"termid":"GO:0005671"}


id: FYPO:0000942
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which nucleus localization is abnormal in a prospore.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nucleus positioning","termid":"FYPO:0000517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"abnormal nucleus positioning in prospore","synonyms":[{"name":"abnormal nuclear localization in prospore","type":"exact"},{"name":"abnormal nucleus localisation in prospore","type":"exact"},{"name":"abnormal nucleus localization in ascospore-type prospore","type":"exact"},{"name":"abnormal nucleus localization in forespore","type":"exact"},{"name":"abnormal nucleus localization in prospore","type":"exact"}],"termid":"FYPO:0000942"}


id: GO:0070457
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-galactose-1-phosphate + H2O = D-galactose + phosphate.","definition_xrefs":["PMID:9462881","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactose-1-phosphate phosphatase activity","termid":"GO:0070456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0016788","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"D-galactose-1-phosphate phosphatase activity","termid":"GO:0070457"}


id: PBO:0084954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Multi-stress response protein; expression is activated by a variety of xenobiotic agents and environmental or physiological stresses; DDR2 has a paralog, HOR7, that arose from the whole genome duplication","termid":"PBO:0084954"}


id: GO:0098538
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side (leaflet) of the transport vesicle membrane that faces the lumen.","definition_xrefs":["GOC:ab"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lumenal side of membrane","termid":"GO:0098576"},{"relation_name":"part_of","term_name":"transport vesicle membrane","termid":"GO:0030658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"lumenal side of transport vesicle membrane","synonyms":[{"name":"internal side of transport vesicle membrane","type":"exact"}],"termid":"GO:0098538"}


id: PBO:0087431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit C of the V1 peripheral membrane domain of V-ATPase; part of the electrogenic proton pump found throughout the endomembrane system; required for the V1 domain to assemble onto the vacuolar membrane; the V1 peripheral membrane domain of vacuolar H+-ATPase (V-ATPase) has eight subunits","termid":"PBO:0087431"}


id: GO:1901864
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving capsorubin.","definition_xrefs":["MetaCyc:PWY-5174","GOC:TermGenie","GOC:yaf","UniPathway:UPA00807"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xanthophyll metabolic process","termid":"GO:0016122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"capsorubin metabolic process","synonyms":[{"name":"capsorubin metabolism","type":"exact"}],"termid":"GO:1901864"}


id: FYPO:0001530
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of GTPase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000652","FYPO:0001985","FYPO:0000654","FYPO:0000707"],"is_obsolete":false,"name":"abnormal GTPase activity","termid":"FYPO:0001530"}


id: PBO:0065685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTTG1IP family member 2","termid":"PBO:0065685"}


id: GO:0018489
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + NADH + O2 + vanillate = 3,4-dihydroxybenzoate + formaldehyde + H2O + NAD+.","definition_xrefs":["EC:1.14.13.82","RHEA:13021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"},{"relation_name":"is_a","term_name":"demethylase activity","termid":"GO:0032451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"vanillate monooxygenase activity","secondary_identifiers":["MetaCyc:RXN-10891","KEGG_REACTION:R05274","MetaCyc:RXN-2","UM-BBD_reactionID:r0146"],"synonyms":[{"name":"4-hydroxy-3-methoxybenzoate demethylase activity","type":"related"},{"name":"vanillate demethylase (aerobic) activity","type":"exact"},{"name":"vanillate demethylase activity","type":"exact"},{"name":"vanillate:oxygen oxidoreductase (demethylating)","type":"related"}],"termid":"GO:0018489"}


id: PBO:0087301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Site-specific endonuclease; required for gene conversion at the MAT locus (homothallic switching) through the generation of a ds DNA break; expression restricted to mother cells in late G1 as controlled by Swi4p-Swi6p, Swi5p, and Ash1p","termid":"PBO:0087301"}


id: PBO:0047942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(14)(q24.1)","termid":"PBO:0047942"}


id: PBO:0079512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin reductase 3","termid":"PBO:0079512"}


id: PATO:0000628
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"displaced","termid":"PATO:0002181"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mislocalised","secondary_identifiers":["PATO:0000621"],"synonyms":[{"name":"ectopic","type":"exact"},{"name":"mislocalized","type":"exact"}],"termid":"PATO:0000628"}


id: _global:regulates_level_of
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"p regulates levels of c if p regulates some amount (PATO:0000070) of c","direct_ancestors":[{"relation_name":"is_a","term_name":"functionally_related_to","termid":"_global:functionally_related_to"},{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulates_levels_of","secondary_identifiers":["GOREL:0000036","RO:0002332"],"termid":"_global:regulates_level_of"}


id: FYPO:0002501
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which protein palmitoylation is normal (i.e. indistinguishable from wild type) during one or both meiotic nuclear divisions. Protein palmitoylation is the addition of a palmitoyl group to a protein amino acid.","definition_xrefs":["GO:0018345","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein palmitoylation","termid":"FYPO:0002500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal protein palmitoylation during meiosis","synonyms":[{"name":"normal protein palmitoylation during meiotic nuclear division","type":"exact"},{"name":"normal protein/peptide palmitoylation during meiosis","type":"exact"}],"termid":"FYPO:0002501"}


id: CHEBI:16414
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-valine","termid":"CHEBI:16414"}


id: GO:1900782
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving fumiquinazoline F.","definition_xrefs":["GOC:di","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete fumiquinazoline F metabolic process (obsolete GO:1900782)","synonyms":[{"name":"fumiquinazoline F metabolism","type":"exact"}],"termid":"GO:1900782"}


id: PBO:0068085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 391","termid":"PBO:0068085"}


id: GO:0004308
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates.","definition_xrefs":["EC:3.2.1.18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-sialidase activity","termid":"GO:0016997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016798","GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"exo-alpha-sialidase activity","secondary_identifiers":["Reactome:R-HSA-4084994","Reactome:R-HSA-9638120","Reactome:R-HSA-4341669","Reactome:R-HSA-1605724","Reactome:R-HSA-168870","MetaCyc:3.2.1.18-RXN","Reactome:R-HSA-1605723","Reactome:R-HSA-1605768","Reactome:R-HSA-4084999","Reactome:R-HSA-4085029"],"synonyms":[{"name":"N-acylneuraminate glycohydrolase activity","type":"related"},{"name":"acetylneuraminidase activity","type":"related"},{"name":"acetylneuraminyl hydrolase activity","type":"related"},{"name":"alpha-neuraminidase activity","type":"related"},{"name":"neuraminidase activity","type":"related"},{"name":"sialidase activity","type":"related"}],"termid":"GO:0004308"}


id: PBO:0057525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 642b","termid":"PBO:0057525"}


id: GO:0003762
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Assists in chromatin assembly by chaperoning histones on to replicating DNA, but is not a component of the assembled nucleosome when performing its normal biological function.","definition_xrefs":["PMID:7600578","GOC:jl","PMID:9325046"],"gene_count":0,"genotype_count":0,"name":"obsolete histone-specific chaperone activity (obsolete GO:0003762)","synonyms":[{"name":"histone-specific chaperone activity","type":"exact"},{"name":"nucleosome assembly chaperone","type":"exact"}],"termid":"GO:0003762"}


id: PBO:0061728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear RNA export factor 2","termid":"PBO:0061728"}


id: PBO:0080007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP12 pseudogene 2","termid":"PBO:0080007"}


id: GO:0032261
data:
  {"annotated_genes":["SJAG_01070","SJAG_04123","SJAG_03298","SJAG_06634","SJAG_01859"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112883,89637],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044209"},{"annotations":[89857],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032263"},{"annotations":[89859,97891],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032264"},{"annotations":[85163],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034355"},{"annotations":[89861],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032265"}]},"cv_name":"biological_process","definition":"Any process which produces a purine nucleotide from derivatives of it, without de novo synthesis.","definition_xrefs":["GOC:jp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleotide biosynthetic process","termid":"GO:0006164"},{"relation_name":"is_a","term_name":"purine-containing compound salvage","termid":"GO:0043101"},{"relation_name":"is_a","term_name":"nucleotide salvage","termid":"GO:0043173"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01070":null,"SJAG_01859":null,"SJAG_03298":null,"SJAG_04123":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"purine nucleotide salvage","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0032261","terms_by_termid":{"GO:0032263":null,"GO:0032264":null,"GO:0032265":null,"GO:0034355":null,"GO:0044209":null}}


id: GO:0010277
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: chlorophyllide a + 2 H+ + 2 NADPH + 2 O2 = chlorophyllide b + 3 H2O + 2 NADP+.","definition_xrefs":["RHEA:30359"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)","termid":"GO:0016703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"chlorophyllide a oxygenase activity","secondary_identifiers":["GO:0046407","EC:1.14.13.122"],"synonyms":[{"name":"CAO activity","type":"broad"},{"name":"chlorophyll a oxygenation activity","type":"exact"},{"name":"chlorophyll b synthesis activity","type":"exact"},{"name":"chlorophyll-b synthesis activity","type":"related"},{"name":"chlorophyllide a:oxygen 7-oxidoreduction activity","type":"related"},{"name":"chlorophyllide-a oxygenation activity","type":"related"}],"termid":"GO:0010277"}


id: GO:0035146
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The joining of specific branches of a tubular system to form a continuous network.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube morphogenesis","termid":"GO:0035239"},{"relation_name":"part_of","term_name":"branching morphogenesis of an epithelial tube","termid":"GO:0048754"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tube fusion","termid":"GO:0035146"}


id: FYPO:0004267
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which primary cell septum disassembly is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"},{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal septum disassembly","synonyms":[{"name":"normal septum disassembly during mitotic cell cycle","type":"related"},{"name":"normal septum disassembly during vegetative growth","type":"exact"}],"termid":"FYPO:0004267"}


id: GO:0047432
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,2-dialkylglycine + H+ + pyruvate = L-alanine + CO2 + dialkyl ketone.","definition_xrefs":["EC:4.1.1.64","RHEA:16073"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"2,2-dialkylglycine decarboxylase (pyruvate) activity","secondary_identifiers":["MetaCyc:4.1.1.64-RXN","KEGG_REACTION:R03854"],"synonyms":[{"name":"2,2-dialkyl-2-amino acid-pyruvate aminotransferase activity","type":"related"},{"name":"2,2-dialkylglycine carboxy-lyase (amino-transferring)","type":"related"},{"name":"2,2-dialkylglycine carboxy-lyase (amino-transferring; L-alanine-forming)","type":"related"},{"name":"L-alanine-alpha-ketobutyrate aminotransferase activity","type":"related"},{"name":"alpha-dialkyl amino acid transaminase activity","type":"related"},{"name":"dialkyl amino acid (pyruvate) decarboxylase activity","type":"related"},{"name":"dialkylamino-acid decarboxylase (pyruvate)","type":"related"}],"termid":"GO:0047432"}


id: GO:1902339
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of apoptotic process involved in morphogenesis.","definition_xrefs":["PMID:12202035","GOC:sart","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic process involved in morphogenesis","termid":"GO:1902337"},{"relation_name":"is_a","term_name":"positive regulation of apoptotic process involved in development","termid":"GO:1904747"},{"relation_name":"positively_regulates","term_name":"apoptotic process involved in morphogenesis","termid":"GO:0060561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of apoptotic process involved in morphogenesis","synonyms":[{"name":"activation of apoptosis involved in development","type":"related"},{"name":"activation of apoptosis involved in morphogenesis","type":"narrow"},{"name":"activation of apoptotic process involved in morphogenesis","type":"narrow"},{"name":"activation of morphogenetic apoptosis","type":"related"},{"name":"positive regulation of apoptosis involved in development","type":"related"},{"name":"positive regulation of apoptosis involved in morphogenesis","type":"narrow"},{"name":"positive regulation of morphogenetic apoptosis","type":"related"},{"name":"up regulation of apoptosis involved in development","type":"related"},{"name":"up regulation of apoptosis involved in morphogenesis","type":"narrow"},{"name":"up regulation of apoptotic process involved in morphogenesis","type":"exact"},{"name":"up regulation of morphogenetic apoptosis","type":"related"},{"name":"up-regulation of apoptosis involved in development","type":"related"},{"name":"up-regulation of apoptosis involved in morphogenesis","type":"narrow"},{"name":"up-regulation of apoptotic process involved in morphogenesis","type":"exact"},{"name":"up-regulation of morphogenetic apoptosis","type":"related"},{"name":"upregulation of apoptosis involved in development","type":"related"},{"name":"upregulation of apoptosis involved in morphogenesis","type":"narrow"},{"name":"upregulation of apoptotic process involved in morphogenesis","type":"exact"},{"name":"upregulation of morphogenetic apoptosis","type":"related"}],"termid":"GO:1902339"}


id: GO:0039596
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any viral process that modulates the frequency, rate or extent of dephosphorylation of a host protein.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by virus of host protein dephosphorylation (obsolete GO:0039596)","termid":"GO:0039596"}


id: PBO:0083561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps verified gene SLM3/YDL033C; YDL032W is not an essential gene","termid":"PBO:0083561"}


id: PBO:0041510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 14 open reading frame 132","termid":"PBO:0041510"}


id: PBO:0108969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ciliary microtubule inner protein 2A","termid":"PBO:0108969"}


id: PBO:0060052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4 pseudogene 40","termid":"PBO:0060052"}


id: GO:0072540
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a CD4-positive, alpha-beta T cell becomes committed to becoming a T-helper 17 cell, a CD4-positive, alpha-beta T cell with the phenotype RORgamma-t-positive that produces IL-17.","definition_xrefs":["CL:0000899","GOC:ebc","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T-helper cell lineage commitment","termid":"GO:0002295"},{"relation_name":"part_of","term_name":"T-helper 17 cell differentiation","termid":"GO:0072539"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T-helper 17 cell lineage commitment","synonyms":[{"name":"T-helper 17 cell fate commitment","type":"exact"},{"name":"Th17 cell lineage commitment","type":"exact"},{"name":"Th17 fate commitment","type":"exact"}],"termid":"GO:0072540"}


id: PBO:0029071
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_reactive_oxygen_species_level_during_vegetative_growth","termid":"PBO:0029071"}


id: GO:0033823
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-glucose + 5-(D-galactosyloxy)-L-lysine-procollagen = UDP + 1,2-D-glucosyl-5-D-(galactosyloxy)-L-lysine-procollagen.","definition_xrefs":["EC:2.4.1.66"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosyltransferase activity","termid":"GO:0046527"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0140096","GO:0003674","GO:0016757"],"is_obsolete":false,"name":"procollagen glucosyltransferase activity","secondary_identifiers":["RHEA:12576","MetaCyc:PROCOLLAGEN-GLUCOSYLTRANSFERASE-RXN","Reactome:R-HSA-1981157"],"synonyms":[{"name":"UDP-glucose-collagenglucosyltransferase activity","type":"related"},{"name":"UDP-glucose:5-(D-galactosyloxy)-L-lysine-procollagen D-glucosyltransferase activity","type":"related"},{"name":"UDPglucose:5-(D-galactosyloxy)-L-lysine-procollagen D-glucosyltransferase activity","type":"related"},{"name":"collagen glucosyltransferase activity","type":"related"},{"name":"collagen hydroxylysyl glucosyltransferase activity","type":"related"},{"name":"galactosylhydroxylysine glucosyltransferase activity","type":"related"},{"name":"galactosylhydroxylysine-glucosyltransferase activity","type":"related"},{"name":"galactosylhydroxylysyl glucosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucose-collagen glucosyltransferase activity","type":"related"}],"termid":"GO:0033823"}


id: PBO:0047130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 170 member B","termid":"PBO:0047130"}


id: SO:0000256
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tRNA sequence that has an asparagine anticodon, and a 3' asparagine binding region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"asparagine_tRNA_primary_transcript","termid":"SO:0000213"},{"relation_name":"is_a","term_name":"tRNA","termid":"SO:0000253"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"asparaginyl_tRNA","synonyms":[{"name":"asparaginyl tRNA","type":"exact"},{"name":"asparaginyl-transfer RNA","type":"exact"},{"name":"asparaginyl-transfer ribonucleic acid","type":"exact"}],"termid":"SO:0000256"}


id: GO:0034246
data:
  {"annotated_genes":["SJAG_03289"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[83578],"is_not":false,"summary":null,"term":"GO:0034246"}]},"cv_name":"molecular_function","definition":"Interacting with the mitochondrial promoter DNA to modulate transcription by the mitochondrial RNA polymerase.","definition_xrefs":["GOC:txnOH-2018","PMID:18391175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription regulator activity","termid":"GO:0140110"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03289":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140110"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140110","GO:0003674"],"is_obsolete":false,"name":"mitochondrial transcription factor activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0001142","GO:0001143","GO:0001144","GO:0000998"],"synonyms":[{"name":"mitochondrial DNA-binding transcription factor activity","type":"narrow"},{"name":"mitochondrial RNA polymerase binding promoter specificity activity","type":"exact"},{"name":"mitochondrial RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity","type":"exact"},{"name":"mitochondrial RNA polymerase core promoter sequence-specific DNA binding transcription factor activity","type":"exact"},{"name":"mitochondrial RNA polymerase promoter specificity activity","type":"related"},{"name":"mitochondrial RNA polymerase transcription factor activity, sequence-specific DNA binding","type":"exact"},{"name":"mitochondrial polymerase transcription factor activity","type":"exact"},{"name":"mitochondrial sequence-specific DNA binding transcription factor activity","type":"exact"},{"name":"mitochondrial sequence-specific DNA-binding transcription factor activity","type":"narrow"},{"name":"mitochondrial transcription initiation factor activity","type":"exact"},{"name":"sequence-specific DNA binding mitochondrial RNA polymerase transcription factor activity","type":"exact"},{"name":"transcription factor activity, mitochondrial RNA polymerase core promoter proximal region sequence-specific binding","type":"exact"},{"name":"transcription factor activity, mitochondrial RNA polymerase core promoter sequence-specific DNA binding","type":"exact"},{"name":"transcription factor activity, mitochondrial proximal promoter sequence-specific binding","type":"exact"}],"termid":"GO:0034246","terms_by_termid":{"GO:0034246":null}}


id: GO:0042423
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catecholamine metabolic process","termid":"GO:0006584"},{"relation_name":"is_a","term_name":"catechol-containing compound biosynthetic process","termid":"GO:0009713"},{"relation_name":"is_a","term_name":"biogenic amine biosynthetic process","termid":"GO:0042401"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"catecholamine biosynthetic process","secondary_identifiers":["Wikipedia:Catecholamines"],"synonyms":[{"name":"catecholamine anabolism","type":"exact"},{"name":"catecholamine biosynthesis","type":"exact"},{"name":"catecholamine formation","type":"exact"},{"name":"catecholamine synthesis","type":"exact"}],"termid":"GO:0042423"}


id: GO:0005747
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. It contains about 25 different polypeptide subunits, including NADH dehydrogenase (ubiquinone), flavin mononucleotide and several different iron-sulfur clusters containing non-heme iron. The iron undergoes oxidation-reduction between Fe(II) and Fe(III), and catalyzes proton translocation linked to the oxidation of NADH by ubiquinone.","definition_xrefs":["ISBN:0198547684","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory chain complex I","termid":"GO:0045271"},{"relation_name":"is_a","term_name":"inner mitochondrial membrane protein complex","termid":"GO:0098800"},{"relation_name":"part_of","term_name":"mitochondrial respirasome","termid":"GO:0005746"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005739"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005739","GO:0005737"],"is_obsolete":false,"name":"mitochondrial respiratory chain complex I","secondary_identifiers":["GO:0005748"],"termid":"GO:0005747"}


id: PBO:0091160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P-specific trancription factor Pc","termid":"PBO:0091160"}


id: PBO:0002640
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.5.1.19","termid":"PBO:0002640"}


id: PBO:0034156
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_protein_structural_homology_relationship_with","termid":"PBO:0034156"}


id: PBO:0065043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRELI domain containing 2","termid":"PBO:0065043"}


id: PBO:0062648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 12 subfamily D member 2","termid":"PBO:0062648"}


id: PBO:0001875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho family GTPase Rho4","termid":"PBO:0001875"}


id: PBO:0057277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 499b","termid":"PBO:0057277"}


id: PBO:0083681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endosomal Rab family GTPase; required for endocytic transport and sorting of vacuolar hydrolases; required for endosomal localization of the CORVET complex; required with YPT52 for MVB biogenesis and sorting; involved in autophagy and ionic stress tolerance; geranylgeranylation required for membrane association; protein abundance increases in response to DNA replication stress; mammalian Rab5 homolog; VPS21 has a paralog, YPT53, that arose from the whole genome duplication","termid":"PBO:0083681"}


id: SO:0002327
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A splice_acceptor_variant (SO:0001574) that is degraded by nonsense-mediated decay (NMD).","definition_xrefs":["GenCC:AR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"splice_acceptor_variant","termid":"SO:0001574"},{"relation_name":"is_a","term_name":"NMD_triggering_variant","termid":"SO:0002319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splice_acceptor_variant_NMD_triggering","synonyms":[{"name":"splice acceptor variant-NMD triggering","type":"exact"},{"name":"splice acceptor variant-nonsense-mediated decay triggering","type":"exact"}],"termid":"SO:0002327"}


id: PATO:0000174
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000174 autonomic function (obsolete PATO:0000174)","termid":"PATO:0000174"}


id: PBO:0069653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 930, pseudogene","termid":"PBO:0069653"}


id: PBO:0040878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bone morphogenetic protein 3","termid":"PBO:0040878"}


id: PBO:0027831
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_ascospore_release_from_ascus","termid":"PBO:0027831"}


id: GO:1901124
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of bacitracin A.","definition_xrefs":["GOC:yaf","GOC:TermGenie","UniPathway:UPA00179"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amide biosynthetic process","termid":"GO:0043604"},{"relation_name":"is_a","term_name":"bacitracin A metabolic process","termid":"GO:1901122"},{"relation_name":"is_a","term_name":"organonitrogen compound biosynthetic process","termid":"GO:1901566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bacitracin A biosynthetic process","synonyms":[{"name":"bacitracin A anabolism","type":"exact"},{"name":"bacitracin A biosynthesis","type":"exact"},{"name":"bacitracin A formation","type":"exact"},{"name":"bacitracin A synthesis","type":"exact"}],"termid":"GO:1901124"}


id: PBO:0085199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Outer kinetochore protein and component of the Ctf3 subcomplex; binds to centromeric DNA in a Ctf19p-dependent manner; involved in chromosome segregation and minichromosome maintenance; orthologous to human centromere constitutive-associated network (CCAN) subunit CENP-K and fission yeast sim4","termid":"PBO:0085199"}


id: PBO:0073124
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC11 homolog B, signal peptidase complex subunit (pseudogene)","termid":"PBO:0073124"}


id: FYPO:0004224
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 20 of histone H4 occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone methylation during vegetative growth","termid":"FYPO:0000870"},{"relation_name":"is_a","term_name":"abnormal histone H4-K20 methylation during vegetative growth","termid":"FYPO:0004215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002274","FYPO:0002494","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"decreased histone H4-K20 trimethylation during vegetative growth","synonyms":[{"name":"decreased H4K20me3 during vegetative growth","type":"exact"},{"name":"decreased histone H4-K20 trimethylation during mitotic cell cycle","type":"related"},{"name":"decreased histone H4K20 trimethylation during vegetative growth","type":"exact"},{"name":"decreased histone lysine H4-K20 trimethylation during vegetative growth","type":"exact"},{"name":"reduced histone H4-K20 trimethylation during vegetative growth","type":"exact"}],"termid":"FYPO:0004224"}


id: GO:0050989
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The carboxylation of the N-terminal amino acid of proteins.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal protein amino acid modification","termid":"GO:0031365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"N-terminal protein amino acid carboxylation","termid":"GO:0050989"}


id: GO:1902613
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of anti-Mullerian hormone signaling pathway.","definition_xrefs":["GO_REF:0000058","GOC:hjd","PMID:23624077","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway","termid":"GO:0090101"},{"relation_name":"is_a","term_name":"regulation of anti-Mullerian hormone signaling pathway","termid":"GO:1902612"},{"relation_name":"negatively_regulates","term_name":"anti-Mullerian hormone receptor signaling pathway","termid":"GO:1990262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of anti-Mullerian hormone signaling pathway","synonyms":[{"name":"down regulation of anti-Mullerian hormone signaling pathway","type":"exact"},{"name":"down-regulation of anti-Mullerian hormone signaling pathway","type":"exact"},{"name":"downregulation of anti-Mullerian hormone signaling pathway","type":"exact"},{"name":"inhibition of anti-Mullerian hormone signaling pathway","type":"narrow"}],"termid":"GO:1902613"}


id: GO:0015218
data:
  {"annotated_genes":["SJAG_00154"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95383],"is_not":false,"summary":null,"term":"GO:0015218"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a pyrimidine nucleotide, any compound consisting of a pyrimidine nucleoside esterified with (ortho)phosphate, from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide transmembrane transporter activity","termid":"GO:0015215"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00154":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"pyrimidine nucleotide transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0015218","terms_by_termid":{"GO:0015218":null}}


id: PBO:0061503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurensin 2","termid":"PBO:0061503"}


id: GO:0035366
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of thymine, 5-methyluracil, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:bf","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of nucleobase-containing compound transport","termid":"GO:0032240"},{"relation_name":"is_a","term_name":"regulation of thymine transport","termid":"GO:0035365"},{"relation_name":"negatively_regulates","term_name":"thymine transport","termid":"GO:0035364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of thymine transport","synonyms":[{"name":"negative regulation of 5-methyluracil transport","type":"exact"}],"termid":"GO:0035366"}


id: MOD:01043
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a p-nitrobenzyl group for the hydrogen atom of a carboxyl group.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"p-nitrobenzyl ester modified residue","synonyms":[{"name":"ONb","type":"exact"}],"termid":"MOD:01043"}


id: FYPO:0009067
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to amorolfine. Cells stop growing (and may die) at a concentration of amorolfine that allows wild type cells to grow.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0002683","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to amorolfine","synonyms":[{"name":"hypersensitive to amorolfine","type":"exact"},{"name":"sensitive to amorolfine during mitotic cell cycle","type":"related"},{"name":"sensitive to amorolfine during vegetative growth","type":"exact"}],"termid":"FYPO:0009067"}


id: PBO:0029117
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_cycle_process","termid":"PBO:0029117"}


id: PBO:0055953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 63","termid":"PBO:0055953"}


id: PBO:0011411
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-not_occurs_at","termid":"PBO:0011411"}


id: GO:0102489
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: GTP + 2 H2O = GMP + 2 hydrogenphosphate + 2 H+.","definition_xrefs":["EC:3.6.1.5","GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete GTP phosphohydrolase activity (obsolete GO:0102489)","secondary_identifiers":["MetaCyc:RXN-14201"],"termid":"GO:0102489"}


id: GO:0031045
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Electron-dense organelle with a granular internal matrix; contains proteins destined to be secreted.","definition_xrefs":["PMID:14690495","NIF_Subcellular:sao772007592"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretory granule","termid":"GO:0030141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"dense core granule","synonyms":[{"name":"dense core vesicle","type":"exact"}],"termid":"GO:0031045"}


id: GO:0001893
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Maternally driven process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin.","definition_xrefs":["ISBN:068340007X","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"is_a","term_name":"maternal process involved in female pregnancy","termid":"GO:0060135"},{"relation_name":"part_of","term_name":"placenta development","termid":"GO:0001890"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maternal placenta development","synonyms":[{"name":"decidua development","type":"related"}],"termid":"GO:0001893"}


id: PBO:0088688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal protein, implicated in vesicle trafficking or lipid metabolism","termid":"PBO:0088688"}


id: SO:0001297
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"N6_methyladenosine is a modified adenosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_adenosine","termid":"SO:0001273"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N6_methyladenosine","secondary_identifiers":["RNAMOD:003"],"synonyms":[{"name":"N6 methyladenosine","type":"exact"},{"name":"N6-methyladenosine","type":"exact"},{"name":"m6A","type":"exact"}],"termid":"SO:0001297"}


id: PBO:0090876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin-5 family plus-end directed microtubule motor, bimC subfamily Cut7","termid":"PBO:0090876"}


id: PBO:0072101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S12 pseudogene 32","termid":"PBO:0072101"}


id: GO:0001161
data:
  {"annotated_genes":["SJAG_03519"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[103649],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001162"}]},"cv_name":"molecular_function","definition":"Binding to an intronic DNA sequence that regulates the transcription of the transcript it is contained within.","definition_xrefs":["GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription cis-regulatory region binding","termid":"GO:0000976"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03519":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0000976"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0000976","GO:0003677","GO:0005488"],"is_obsolete":false,"name":"intronic transcription regulatory region sequence-specific DNA binding","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0044213"],"synonyms":[{"name":"intronic transcription regulatory region DNA binding","type":"related"}],"termid":"GO:0001161","terms_by_termid":{"GO:0001162":null}}


id: GO:0042060
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events that restore integrity to a damaged tissue, following an injury.","definition_xrefs":["PMID:15269788","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to wounding","termid":"GO:0009611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"wound healing","secondary_identifiers":["Wikipedia:Wound_healing"],"termid":"GO:0042060"}


id: GO:0010331
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a gibberellin, a plant hormone that regulates aspects of plant growth.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprenoid binding","termid":"GO:0019840"},{"relation_name":"is_a","term_name":"carboxylic acid binding","termid":"GO:0031406"},{"relation_name":"is_a","term_name":"hormone binding","termid":"GO:0042562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0008289","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"gibberellin binding","synonyms":[{"name":"gibberellic acid receptor","type":"related"},{"name":"gibberellin receptor","type":"related"}],"termid":"GO:0010331"}


id: PBO:0044398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily C member 59, pseudogene","termid":"PBO:0044398"}


id: GO:0070707
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of an RNA molecule by insertion of a dinucleotide.","definition_xrefs":["GOC:cb","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA nucleotide insertion","termid":"GO:0070705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"RNA dinucleotide insertion","termid":"GO:0070707"}


id: GO:0032919
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of spermine by addition of acetyl groups.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spermine metabolic process","termid":"GO:0008215"},{"relation_name":"is_a","term_name":"polyamine acetylation","termid":"GO:0032917"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spermine acetylation","termid":"GO:0032919"}


id: PBO:0086558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; YLR365W is not an essential gene","termid":"PBO:0086558"}


id: GO:0044606
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: protein-serine-choline phosphate + H2O = protein-serine + choline phosphate.","definition_xrefs":["GOC:sp","PMID:22158903"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides","termid":"GO:0016818"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"phosphocholine hydrolase activity","termid":"GO:0044606"}


id: PBO:0079211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis specific serine kinase 3","termid":"PBO:0079211"}


id: GO:0051966
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of chemical synaptic transmission","termid":"GO:0050804"},{"relation_name":"regulates","term_name":"synaptic transmission, glutamatergic","termid":"GO:0035249"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of synaptic transmission, glutamatergic","termid":"GO:0051966"}


id: GO:0002159
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular process that results in the aggregation, arrangement and bonding together of a set of components to form a desmosome. A desmosome is a patch-like intercellular junction found in vertebrate tissues, consisting of parallel zones of two cell membranes, separated by an space of 25-35 nm, and having dense fibrillar plaques in the subjacent cytoplasm.","definition_xrefs":["ISBN:0198506732","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"desmosome organization","termid":"GO:0002934"},{"relation_name":"is_a","term_name":"cell-cell junction assembly","termid":"GO:0007043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"desmosome assembly","termid":"GO:0002159"}


id: PR:G2TRT8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC1235.18 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRT8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transmembrane protein C1235.18 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1235.18","synonyms":[{"name":"Spom972h-SPCC1235.18","type":"exact"}],"termid":"PR:G2TRT8"}


id: GO:0046292
data:
  {"annotated_genes":["SJAG_01457","SJAG_05256"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99557,91640],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046294"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving formaldehyde (methanal, H2C=O), a colorless liquid or gas with a pungent odor, commonly used as a fixative or an antibacterial agent.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular aldehyde metabolic process","termid":"GO:0006081"},{"relation_name":"is_a","term_name":"small molecule metabolic process","termid":"GO:0044281"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01457":null,"SJAG_05256":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"formaldehyde metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"formaldehyde metabolism","type":"exact"},{"name":"methanal metabolic process","type":"exact"},{"name":"methanal metabolism","type":"exact"}],"termid":"GO:0046292","terms_by_termid":{"GO:0046294":null}}


id: PBO:0039075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-acylglycerol-3-phosphate O-acyltransferase 3","termid":"PBO:0039075"}


id: FYPO:0003470
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mRNA splicing via the spliceosome is increased.","definition_xrefs":["PMID:24298023","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mRNA splicing, via spliceosome","termid":"FYPO:0000189"},{"relation_name":"is_a","term_name":"increased RNA splicing","termid":"FYPO:0002916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0005447","FYPO:0001985","FYPO:0006551","FYPO:0000002"],"is_obsolete":false,"name":"increased mRNA splicing, via spliceosome","synonyms":[{"name":"increased mRNA splicing, via spliceosome during mitotic cell cycle","type":"related"},{"name":"increased mRNA splicing, via spliceosome during vegetative growth","type":"exact"},{"name":"increased nuclear mRNA splicing, via spliceosome","type":"exact"},{"name":"increased splicing","type":"broad"}],"termid":"FYPO:0003470"}


id: GO:2000504
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of blood vessel remodeling.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of tissue remodeling","termid":"GO:0034105"},{"relation_name":"is_a","term_name":"regulation of blood vessel remodeling","termid":"GO:0060312"},{"relation_name":"positively_regulates","term_name":"blood vessel remodeling","termid":"GO:0001974"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of blood vessel remodeling","synonyms":[{"name":"positive regulation of blood vessel remodelling","type":"exact"}],"termid":"GO:2000504"}


id: PBO:0081790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 718","termid":"PBO:0081790"}


id: PBO:0085506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S10, no bacterial homolog; RPS10A has a paralog, RPS10B, that arose from the whole genome duplication; mutations in the human homolog associated with Diamond-Blackfan anemia","termid":"PBO:0085506"}


id: PBO:0075831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"structure specific recognition protein 1","termid":"PBO:0075831"}


id: GO:0019694
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving alkanesulfonates, the anion of alkanesulfonic acids, sulfonic acid derivatives containing an aliphatic hydrocarbon group.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic acid metabolic process","termid":"GO:0006082"},{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006790"],"is_obsolete":false,"name":"alkanesulfonate metabolic process","secondary_identifiers":["MetaCyc:ALKANEMONOX-PWY"],"synonyms":[{"name":"alkanesulfonate metabolism","type":"exact"},{"name":"alkanesulphonate metabolic process","type":"exact"},{"name":"alkanesulphonate metabolism","type":"exact"}],"termid":"GO:0019694"}


id: PBO:0027423
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_aseptate_vegetative_cell","termid":"PBO:0027423"}


id: PR:O74867
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC18.17c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74867"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C18.17c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC18.17c","synonyms":[{"name":"Spom972h-SPCC18.17c","type":"exact"}],"termid":"PR:O74867"}


id: GO:0001760
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-amino-3-carboxymuconate 6-semialdehyde + H+ = 2-aminomuconate 6-semialdehyde + CO2.","definition_xrefs":["EC:4.1.1.45","RHEA:16557"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"aminocarboxymuconate-semialdehyde decarboxylase activity","secondary_identifiers":["KEGG_REACTION:R04323","MetaCyc:AMINO-CARBOXYMUCONATE-SEMIALDEHYDE-RXN"],"synonyms":[{"name":"2-amino-3-(3-oxoprop-1-en-1-yl)but-2-enedioate carboxy-lyase (2-aminomuconate-semialdehyde-forming)","type":"related"},{"name":"2-amino-3-(3-oxoprop-1-en-1-yl)but-2-enedioate carboxy-lyase activity","type":"related"},{"name":"2-amino-3-(3-oxoprop-2-enyl)but-2-enedioate carboxy-lyase activity","type":"related"},{"name":"ACMSD activity","type":"exact"},{"name":"alpha-amino-beta-carboxymuconate-epsilon-semialdehade decarboxylase activity","type":"related"},{"name":"alpha-amino-beta-carboxymuconate-epsilon-semialdehyde beta-decarboxylase activity","type":"related"},{"name":"picolinic acid carboxylase activity","type":"related"},{"name":"picolinic acid decarboxylase activity","type":"related"}],"termid":"GO:0001760"}


id: PBO:0004060
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Suppressor Of Cdc2","termid":"PBO:0004060"}


id: PBO:0018146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eisosome assembly protein eis1","termid":"PBO:0018146"}


id: PBO:0087699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the prohibitin complex (Phb1p-Phb2p); prohibitin is a 1.2 MDa ring-shaped inner mitochondrial membrane chaperone that stabilizes newly synthesized proteins; determinant of replicative life span; involved in mitochondrial segregation; prohibitin deficiency induces a mitochondrial unfolded protein response (mtUPR)","termid":"PBO:0087699"}


id: GO:0050091
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-(2-hydroxyphenyl)propanoate + H+ + NADH + O2 = 3-(2,3-dihydroxyphenyl)propanoate + H2O + NAD+.","definition_xrefs":["EC:1.14.13.4","RHEA:17669"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"melilotate 3-monooxygenase activity","secondary_identifiers":["MetaCyc:MELILOTATE-3-MONOOXYGENASE-RXN","KEGG_REACTION:R03369"],"synonyms":[{"name":"2-hydroxyphenylpropionate hydroxylase activity","type":"related"},{"name":"2-hydroxyphenylpropionic hydroxylase activity","type":"related"},{"name":"3-(2-hydroxyphenyl)propanoate,NADH:oxygen oxidoreductase (3-hydroxylating)","type":"related"},{"name":"melilotate hydroxylase activity","type":"exact"},{"name":"melilotic hydroxylase activity","type":"related"}],"termid":"GO:0050091"}


id: PBO:0091661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor Cha4","termid":"PBO:0091661"}


id: PBO:0068080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 386","termid":"PBO:0068080"}


id: PBO:0082516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of the NatC type N-terminal acetyltransferase (NAT); involved in subcellular targeting of select N-terminally acetylated substrates to the Golgi apparatus (Arl3p and Grh1p) and the inner nuclear membrane (Trm1p); required for replication of dsRNA virus; human NatC ortholog, NAA30, functionally complements the null, requiring either auxiliary subunit Mak10p or co-expression of human ortholog, NAA35; NAA60, the human NatF gene, also complements the null allele","termid":"PBO:0082516"}


id: GO:0097589
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A non-membrane-bounded organelle superficially similar to a bacterial-type flagellum; they both consist of filaments extending outside the cell, and rotate to propel the cell, but the archaeal flagella (also called archaella) have a unique structure which lacks a central channel. Similar to bacterial type IV pilins, the archaeal flagellins (archaellins) are made with class 3 signal peptides and they are processed by a type IV prepilin peptidase-like enzyme. The archaellins are typically modified by the addition of N-linked glycans which are necessary for proper assembly and/or function.","definition_xrefs":["PMID:21265748","Wikipedia:Flagellum#Archaeal","GOC:cilia","PMID:23146836","PMID:23204365","GOC:krc","PMID:24330313"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell projection","termid":"GO:0042995"},{"relation_name":"is_a","term_name":"non-membrane-bounded organelle","termid":"GO:0043228"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"archaeal-type flagellum","synonyms":[{"name":"archaeal flagellum","type":"related"},{"name":"archaella","type":"related"},{"name":"archaellum","type":"exact"}],"termid":"GO:0097589"}


id: GO:1900413
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A positive regulation of transcription from RNA polymerase II promoter that results in positive regulation of phospholipid biosynthetic process.","definition_xrefs":["GOC:mah","PMID:16537923","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of phospholipid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (obsolete GO:1900413)","synonyms":[{"name":"positive regulation of phospholipid biosynthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of phospholipid synthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:1900413"}


id: PBO:0110483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LSM2 pseudogene 1","termid":"PBO:0110483"}


id: FYPO:0007512
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure chromosome III is abnormal.","definition_xrefs":["PomBase:mah","PomBase:jh","PMID:17690116"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromosome morphology during vegetative growth","termid":"FYPO:0000848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000641"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0001320","FYPO:0000707","FYPO:0000661","FYPO:0000652","FYPO:0005447","FYPO:0000641","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal chromosome III morphology","synonyms":[{"name":"abnormal chromosome III mobility","type":"related"},{"name":"abnormal chromosome III morphology during mitotic cell cycle","type":"related"},{"name":"abnormal chromosome III morphology during vegetative growth","type":"exact"}],"termid":"FYPO:0007512"}


id: PBO:0081343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 143","termid":"PBO:0081343"}


id: PR:O13771
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- glc8 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13771"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C17A5.09c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A5.09c","synonyms":[{"name":"Spom972h-glc8","type":"exact"}],"termid":"PR:O13771"}


id: PATO:0000159
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000159 absolute incidence (obsolete PATO:0000159)","termid":"PATO:0000159"}


id: PBO:0038913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adhesion G protein-coupled receptor F3","termid":"PBO:0038913"}


id: PBO:0085037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-catalytic subunit of the NatC N-terminal acetyltransferase; required for replication of dsRNA virus; expression is glucose-repressible; human NatC ortholog, Naa35, requires co-expression of the human catalytic subunit, Naa30, to functionally complement the null allele","termid":"PBO:0085037"}


id: PBO:0043361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CLSTN2 antisense RNA 1","termid":"PBO:0043361"}


id: PBO:0029636
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-swollen_stubby_vegetative_cell","termid":"PBO:0029636"}


id: GO:0045624
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of T-helper cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of immune effector process","termid":"GO:0002699"},{"relation_name":"is_a","term_name":"positive regulation of CD4-positive, alpha-beta T cell differentiation","termid":"GO:0043372"},{"relation_name":"is_a","term_name":"regulation of T-helper cell differentiation","termid":"GO:0045622"},{"relation_name":"is_a","term_name":"positive regulation of immune response","termid":"GO:0050778"},{"relation_name":"positively_regulates","term_name":"T-helper cell differentiation","termid":"GO:0042093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"positive regulation of T-helper cell differentiation","synonyms":[{"name":"activation of T-helper cell differentiation","type":"narrow"},{"name":"positive regulation of T-helper cell development","type":"related"},{"name":"stimulation of T-helper cell differentiation","type":"narrow"},{"name":"up regulation of T-helper cell differentiation","type":"exact"},{"name":"up-regulation of T-helper cell differentiation","type":"exact"},{"name":"upregulation of T-helper cell differentiation","type":"exact"}],"termid":"GO:0045624"}


id: PBO:0082385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Beta 5 subunit of the 20S proteasome; responsible for the chymotryptic activity of the proteasome","termid":"PBO:0082385"}


id: PBO:0070043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1340, pseudogene","termid":"PBO:0070043"}


id: PBO:0054306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1698","termid":"PBO:0054306"}


id: GO:1990706
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex involved in the assembly of the mitotic checkpoint complex that in turn inhibits the anaphase promoting complex/cyclosome (APC/C).","definition_xrefs":["PMID:22493223","PMID:22898774","GOC:bhm","intAct:EBI-10691224"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"MAD1 complex","synonyms":[{"name":"MAD1 homodimer","type":"exact"}],"termid":"GO:1990706"}


id: GO:0102280
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: choline + NADP+ = betaine aldehyde + NADPH + H+.","definition_xrefs":["PMID:21769646","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"choline dehydrogenase activity","termid":"GO:0008812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"choline monooxygenase (NADP+) activity","secondary_identifiers":["MetaCyc:RXN-12582"],"synonyms":[{"name":"choline monooxygenase activity (NADP-dependent)","type":"exact"}],"termid":"GO:0102280"}


id: GO:0070763
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of homodimer of the Notch ligand Delta1.","definition_xrefs":["PMID:12794186"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"Delta1 complex","synonyms":[{"name":"Delta1 homodimer complex","type":"exact"}],"termid":"GO:0070763"}


id: GO:0001926
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of B-1 B cell differentiation.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of B-1 B cell differentiation","termid":"GO:0001924"},{"relation_name":"is_a","term_name":"positive regulation of B cell differentiation","termid":"GO:0045579"},{"relation_name":"positively_regulates","term_name":"B-1 B cell differentiation","termid":"GO:0001923"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of B-1 B cell differentiation","synonyms":[{"name":"activation of B-1 B cell differentiation","type":"narrow"},{"name":"positive regulation of B-1 B cell development","type":"related"},{"name":"positive regulation of B-1 B lymphocyte differentiation","type":"exact"},{"name":"positive regulation of B-1 B-cell differentiation","type":"exact"},{"name":"positive regulation of B-1 B-lymphocyte differentiation","type":"exact"},{"name":"stimulation of B-1 B cell differentiation","type":"narrow"},{"name":"up regulation of B-1 B cell differentiation","type":"exact"},{"name":"up-regulation of B-1 B cell differentiation","type":"exact"},{"name":"upregulation of B-1 B cell differentiation","type":"exact"}],"termid":"GO:0001926"}


id: PBO:0047760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"folate receptor beta","termid":"PBO:0047760"}


id: PBO:0031614
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_vacuolar_transport_during_vegetative_growth","termid":"PBO:0031614"}


id: GO:0030666
data:
  {"annotated_genes":["SJAG_00104","SJAG_01167","SJAG_02805","SJAG_00800"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[104395,92362,107707,107648],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030122"}]},"cv_name":"cellular_component","definition":"The lipid bilayer surrounding an endocytic vesicle.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle membrane","termid":"GO:0030659"},{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"},{"relation_name":"part_of","term_name":"endocytic vesicle","termid":"GO:0030139"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00104":null,"SJAG_00800":null,"SJAG_01167":null,"SJAG_02805":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0031410","GO:0005737"],"is_obsolete":false,"name":"endocytic vesicle membrane","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0030666","terms_by_termid":{"GO:0030122":null}}


id: PBO:0046493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ergosterol biosynthesis 28 homolog","termid":"PBO:0046493"}


id: GO:0072187
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of a metanephric cap from unspecified parts. The metanephric cap is formed by the condensation of metanephric mesenchymal cells surrounding the ureteric bud tip.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"metanephric cap morphogenesis","termid":"GO:0072186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric cap formation","termid":"GO:0072187"}


id: PBO:0086007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; structure defines a new subfamily of the split beta-alpha-beta sandwiches; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YML108W is not an essential gene; relative distribution to the nucleus increases upon DNA replication stress","termid":"PBO:0086007"}


id: PBO:0056248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"male germ cell associated kinase","termid":"PBO:0056248"}


id: PBO:0050397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein C like 2","termid":"PBO:0050397"}


id: GO:1904917
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of L-arginine across a membrane from lysosomal lumen to cytosol.","definition_xrefs":["GOC:kmv","PMID:22822152","GOC:TermGenie","GO_REF:0000078"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysosomal transport","termid":"GO:0007041"},{"relation_name":"is_a","term_name":"L-arginine transmembrane export from vacuole","termid":"GO:1990818"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"L-arginine transmembrane transport from lysosomal lumen to cytosol","synonyms":[{"name":"transmembrane L-arginine transport from lysosomal lumen to cytosol","type":"exact"}],"termid":"GO:1904917"}


id: PBO:0069790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1076, pseudogene","termid":"PBO:0069790"}


id: PBO:0047403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 41","termid":"PBO:0047403"}


id: PBO:0090520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysophospholipase","termid":"PBO:0090520"}


id: PATO:0001459
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitivity of a process to oxygen","termid":"PATO:0001458"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aerobic (for occurrence)","termid":"PATO:0001459"}


id: PBO:0076612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 30","termid":"PBO:0076612"}


id: GO:0071646
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of macrophage inflammatory protein-1 gamma.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of chemokine production","termid":"GO:0032642"},{"relation_name":"regulates","term_name":"macrophage inflammatory protein-1 gamma production","termid":"GO:0071607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of macrophage inflammatory protein-1 gamma production","synonyms":[{"name":"regulation of CCL9 production","type":"exact"},{"name":"regulation of MIP-1g production","type":"exact"},{"name":"regulation of chemokine (C-C motif) ligand 9 production","type":"exact"}],"termid":"GO:0071646"}


id: PBO:0083153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps ORF SSM4/YIL030C","termid":"PBO:0083153"}


id: PBO:0084692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial dicarboxylate carrier; integral membrane protein, catalyzes a dicarboxylate-phosphate exchange across the inner mitochondrial membrane, transports cytoplasmic dicarboxylates into the mitochondrial matrix","termid":"PBO:0084692"}


id: PBO:0055668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat and Ig domain containing 4","termid":"PBO:0055668"}


id: PBO:0060737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase complex assembly factor 4 pseudogene 2","termid":"PBO:0060737"}


id: FYPO:0001338
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which nucleus localization is abnormal in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nucleus positioning","termid":"FYPO:0000517"},{"relation_name":"is_a","term_name":"abnormal organelle localization","termid":"FYPO:0006329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"abnormal nucleus positioning during vegetative growth","synonyms":[{"name":"abnormal nuclear localization during vegetative growth","type":"exact"},{"name":"abnormal nucleus localisation during vegetative growth","type":"exact"},{"name":"abnormal nucleus localization during mitotic cell cycle","type":"related"},{"name":"abnormal nucleus localization during vegetative growth","type":"exact"}],"termid":"FYPO:0001338"}


id: PBO:0057026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR124-2 host gene","termid":"PBO:0057026"}


id: GO:0042911
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the directed movement of acridine (10-azaanthracene), a heterocyclic ring compound found in crude coal-tar anthracene from one side of a membrane to the other.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete acridine transmembrane transporter activity (obsolete GO:0042911)","synonyms":[{"name":"acridine transporter activity","type":"related"}],"termid":"GO:0042911"}


id: GO:0001530
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a lipopolysaccharide.","definition_xrefs":["PMID:11079463"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid binding","termid":"GO:0008289"},{"relation_name":"is_a","term_name":"carbohydrate derivative binding","termid":"GO:0097367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0008289"],"is_obsolete":false,"name":"lipopolysaccharide binding","synonyms":[{"name":"LPS binding","type":"exact"},{"name":"endotoxin binding","type":"broad"}],"termid":"GO:0001530"}


id: PATO:0001825
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A wetness quality that is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"wet","termid":"PATO:0001823"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased wetness","termid":"PATO:0001825"}


id: GO:0009030
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + thiamine phosphate = ADP + H+ + thiamine diphosphate.","definition_xrefs":["EC:2.7.4.16","RHEA:15913"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, phosphate group as acceptor","termid":"GO:0016776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016301","GO:0003824"],"is_obsolete":false,"name":"thiamine-phosphate kinase activity","secondary_identifiers":["KEGG_REACTION:R00617","MetaCyc:THI-P-KIN-RXN"],"synonyms":[{"name":"ATP:thiamine-phosphate phosphotransferase activity","type":"related"},{"name":"thiamin monophosphatase activity","type":"related"},{"name":"thiamin monophosphokinase activity","type":"related"},{"name":"thiamin phosphate kinase activity","type":"exact"},{"name":"thiamin-monophosphate kinase activity","type":"related"},{"name":"thiamin-phosphate kinase activity","type":"exact"},{"name":"thiamine-monophosphate kinase activity","type":"related"}],"termid":"GO:0009030"}


id: PBO:0001219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingolipid biosynthesis protein (predicted)","termid":"PBO:0001219"}


id: FYPO:0001376
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of calcium ion measured in a cell during a cellular response to salt stress is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular calcium level","termid":"FYPO:0001199"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal cellular calcium level during cellular response to salt stress","synonyms":[{"name":"normal cellular calcium accumulation during cellular response to salt stress","type":"related"},{"name":"normal cellular calcium ion level during cellular response to salt stress","type":"exact"},{"name":"normal cellular calcium level during cellular response to salt stress during mitotic cell cycle","type":"related"},{"name":"normal cellular calcium level during cellular response to salt stress during vegetative growth","type":"exact"}],"termid":"FYPO:0001376"}


id: PBO:0045881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 delta pseudogene 5","termid":"PBO:0045881"}


id: GO:0017110
data:
  {"annotated_genes":["SJAG_03676","SJAG_01595","SJAG_03362"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95608],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044715"},{"annotations":[110023],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043262"},{"annotations":[110027],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036384"},{"annotations":[110028,96409],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004382"},{"annotations":[110031,96411],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045134"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a nucleoside diphosphate + H2O = a nucleoside monophosphate + phosphate.","definition_xrefs":["EC:3.6.1.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01595":null,"SJAG_03362":null,"SJAG_03676":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"nucleoside diphosphate phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:36799","Reactome:R-HSA-8851225","MetaCyc:NUCLEOSIDE-DIPHOSPHATASE-RXN","Reactome:R-HSA-8851356","Reactome:R-HSA-8851550","Reactome:R-HSA-8850854","Reactome:R-HSA-8851129","Reactome:R-HSA-8851396"],"synonyms":[{"name":"NDPase activity","type":"related"},{"name":"apyrase activity","type":"broad"},{"name":"inosine 5'-diphosphatase","type":"narrow"},{"name":"inosine diphosphatase","type":"narrow"},{"name":"nucleoside 5'-diphosphatase activity","type":"related"},{"name":"nucleoside diphosphatase activity","type":"exact"},{"name":"nucleoside diphosphate phosphohydrolase activity","type":"related"},{"name":"nucleoside-diphosphatase activity","type":"exact"},{"name":"nucleoside-diphosphate phosphohydrolase activity","type":"related"},{"name":"type B nucleoside diphosphatase","type":"narrow"},{"name":"type L nucleoside diphosphatase","type":"narrow"}],"termid":"GO:0017110","terms_by_termid":{"GO:0004382":null,"GO:0036384":null,"GO:0043262":null,"GO:0044715":null,"GO:0045134":null}}


id: PBO:0069930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1223, pseudogene","termid":"PBO:0069930"}


id: GO:1903897
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the PERK-mediated unfolded protein response.","definition_xrefs":["GO_REF:0000058","GOC:bf","GOC:TermGenie","GOC:PARL","PMID:22013210"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endoplasmic reticulum unfolded protein response","termid":"GO:1900101"},{"relation_name":"is_a","term_name":"regulation of intracellular signal transduction","termid":"GO:1902531"},{"relation_name":"regulates","term_name":"PERK-mediated unfolded protein response","termid":"GO:0036499"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of PERK-mediated unfolded protein response","synonyms":[{"name":"regulation of EIF2AK3-mediated unfolded protein response","type":"related"},{"name":"regulation of PERK branch of UPR","type":"exact"},{"name":"regulation of PERK signal transduction pathway","type":"broad"},{"name":"regulation of PERK signaling in response to endoplasmic reticulum stress","type":"related"},{"name":"regulation of PKR-like ER kinase signal transduction","type":"exact"},{"name":"regulation of UPR signaling by PERK stress sensor","type":"exact"},{"name":"regulation of endoplasmic reticulum unfolded protein response; PERK signaling","type":"exact"}],"termid":"GO:1903897"}


id: PBO:0003299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"M-factor precursor Mfm3","termid":"PBO:0003299"}


id: GO:0030130
data:
  {"annotated_genes":["SJAG_04565","SJAG_04517","SJAG_01809","SJAG_04609","SJAG_00379","SJAG_02282"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[90990,108959],"is_not":false,"summary":null,"term":"GO:0030130"},{"annotations":[97202,108837,114883,109055],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030121"}]},"cv_name":"cellular_component","definition":"A clathrin coat found on a vesicle of the trans-Golgi network.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clathrin vesicle coat","termid":"GO:0030125"},{"relation_name":"part_of","term_name":"Golgi apparatus","termid":"GO:0005794"},{"relation_name":"part_of","term_name":"trans-Golgi network transport vesicle membrane","termid":"GO:0012510"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00379":null,"SJAG_01809":null,"SJAG_02282":null,"SJAG_04517":null,"SJAG_04565":null,"SJAG_04609":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0032991","GO:0005575","GO:0005794","GO:0031410"],"is_obsolete":false,"name":"clathrin coat of trans-Golgi network vesicle","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"clathrin coat of TGN vesicle","type":"exact"}],"termid":"GO:0030130","terms_by_termid":{"GO:0030121":null,"GO:0030130":null}}


id: PBO:0053288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIMD1 antisense RNA 1","termid":"PBO:0053288"}


id: GO:0061875
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates stops, prevents, or reduces the frequency, rate or extent of hepatic stellate cell contraction.","definition_xrefs":["PMID:24204762"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"is_a","term_name":"regulation of hepatic stellate cell contraction","termid":"GO:0061873"},{"relation_name":"negatively_regulates","term_name":"hepatic stellate cell contraction","termid":"GO:0061872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of hepatic stellate cell contraction","termid":"GO:0061875"}


id: GO:1900738
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of phospholipase C-activating G protein-coupled receptor signaling pathway.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of G protein-coupled receptor signaling pathway","termid":"GO:0045745"},{"relation_name":"is_a","term_name":"regulation of phospholipase C-activating G protein-coupled receptor signaling pathway","termid":"GO:1900736"},{"relation_name":"positively_regulates","term_name":"phospholipase C-activating G protein-coupled receptor signaling pathway","termid":"GO:0007200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of phospholipase C-activating G protein-coupled receptor signaling pathway","synonyms":[{"name":"activation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"activation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"activation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger","type":"exact"},{"name":"activation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"activation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"activation of PLC-activating GPCR signaling pathway","type":"exact"},{"name":"activation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger","type":"related"},{"name":"activation of phospholipase C-activating G-protein coupled receptor signaling pathway","type":"narrow"},{"name":"activation of phospholipase C-activating dopamine receptor signaling pathway","type":"narrow"},{"name":"positive regulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"positive regulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"positive regulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger","type":"exact"},{"name":"positive regulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"positive regulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"positive regulation of PLC-activating GPCR signaling pathway","type":"exact"},{"name":"positive regulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger","type":"related"},{"name":"positive regulation of phospholipase C-activating G-protein coupled receptor signaling pathway","type":"exact"},{"name":"positive regulation of phospholipase C-activating dopamine receptor signaling pathway","type":"narrow"},{"name":"up regulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"up regulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"up regulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger","type":"exact"},{"name":"up regulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"up regulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"up regulation of PLC-activating GPCR signaling pathway","type":"exact"},{"name":"up regulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger","type":"related"},{"name":"up regulation of phospholipase C-activating G-protein coupled receptor signaling pathway","type":"exact"},{"name":"up regulation of phospholipase C-activating dopamine receptor signaling pathway","type":"narrow"},{"name":"up-regulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"up-regulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"up-regulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger","type":"exact"},{"name":"up-regulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"up-regulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"up-regulation of PLC-activating GPCR signaling pathway","type":"exact"},{"name":"up-regulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger","type":"related"},{"name":"up-regulation of phospholipase C-activating G-protein coupled receptor signaling pathway","type":"exact"},{"name":"up-regulation of phospholipase C-activating dopamine receptor signaling pathway","type":"narrow"},{"name":"upregulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"upregulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"upregulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger","type":"exact"},{"name":"upregulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"upregulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"upregulation of PLC-activating GPCR signaling pathway","type":"exact"},{"name":"upregulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger","type":"related"},{"name":"upregulation of phospholipase C-activating G-protein coupled receptor signaling pathway","type":"exact"},{"name":"upregulation of phospholipase C-activating dopamine receptor signaling pathway","type":"narrow"}],"termid":"GO:1900738"}


id: PBO:0052264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KDM3A pseudogene 1","termid":"PBO:0052264"}


id: PBO:0047337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibulin 5","termid":"PBO:0047337"}


id: PBO:0030508
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_topoisomerase_inhibitor","termid":"PBO:0030508"}


id: PBO:0039381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amphiphysin","termid":"PBO:0039381"}


id: PBO:0052266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine demethylase 4A","termid":"PBO:0052266"}


id: GO:0085026
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex, symbiont-induced host-derived organelle that is comprised of multiple protein and lipid domains.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell cytoplasm part","termid":"GO:0033655"},{"relation_name":"is_a","term_name":"extracellular non-membrane-bounded organelle","termid":"GO:0043264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0005576","GO:0005575"],"is_obsolete":false,"name":"tubovesicular membrane network","synonyms":[{"name":"TVM network","type":"exact"},{"name":"TVN","type":"exact"}],"termid":"GO:0085026"}


id: PBO:0004814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis factor recycling AAA family ATPase (predicted)","termid":"PBO:0004814"}


id: PBO:0052661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 29","termid":"PBO:0052661"}


id: PBO:0039761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2","termid":"PBO:0039761"}


id: PBO:0086646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the membrane of vacuole with cell cycle-correlated morphology","termid":"PBO:0086646"}


id: GO:0007178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by an extracellular ligand binding to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:signaling","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme-linked receptor protein signaling pathway","termid":"GO:0007167"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"cell surface receptor protein serine/threonine kinase signaling pathway","synonyms":[{"name":"transmembrane receptor protein serine/threonine kinase signaling pathway","type":"broad"},{"name":"transmembrane receptor protein serine/threonine kinase signalling pathway","type":"exact"}],"termid":"GO:0007178"}


id: PBO:0038446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AAR2 splicing factor","termid":"PBO:0038446"}


id: GO:0061182
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of the process whose specific outcome is the progression of a chondrocyte over time, from its commitment to its mature state. Chondrocyte development does not include the steps involved in committing a chondroblast to a chondrocyte fate.","definition_xrefs":["GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell development","termid":"GO:0010721"},{"relation_name":"is_a","term_name":"negative regulation of chondrocyte differentiation","termid":"GO:0032331"},{"relation_name":"is_a","term_name":"regulation of chondrocyte development","termid":"GO:0061181"},{"relation_name":"negatively_regulates","term_name":"chondrocyte development","termid":"GO:0002063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of chondrocyte development","termid":"GO:0061182"}


id: GO:0046870
data:
  {"annotated_genes":["SJAG_04516"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[93473],"is_not":false,"summary":null,"term":"GO:0046870"}]},"cv_name":"molecular_function","definition":"Binding to a cadmium ion (Cd).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transition metal ion binding","termid":"GO:0046914"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04516":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0046872"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0046872","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"cadmium ion binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Cd ion binding","type":"exact"},{"name":"cadmium binding","type":"exact"},{"name":"copper/cadmium binding","type":"broad"}],"termid":"GO:0046870","terms_by_termid":{"GO:0046870":null}}


id: GO:0009356
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric protein complex that possesses 4-amino-4-deoxychorismate synthase activity.","definition_xrefs":["PMID:7592344","PMID:2251281"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"aminodeoxychorismate synthase complex","synonyms":[{"name":"4-amino-4-deoxychorismate synthase complex","type":"related"},{"name":"ADC synthase complex","type":"exact"},{"name":"p-aminobenzoate synthetase complex","type":"related"}],"termid":"GO:0009356"}


id: GO:1905531
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of uracil import across plasma membrane.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:26536126"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transmembrane transport","termid":"GO:0034764"},{"relation_name":"is_a","term_name":"regulation of uracil import across plasma membrane","termid":"GO:1905529"},{"relation_name":"positively_regulates","term_name":"uracil import across plasma membrane","termid":"GO:0098721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"positive regulation of uracil import across plasma membrane","termid":"GO:1905531"}


id: GO:1900676
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of F-9775B biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of F-9775B biosynthetic process","termid":"GO:1900675"},{"relation_name":"is_a","term_name":"negative regulation of polyketide biosynthetic process","termid":"GO:1900733"},{"relation_name":"negatively_regulates","term_name":"F-9775B biosynthetic process","termid":"GO:1900614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0019748","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"negative regulation of F-9775B biosynthetic process","synonyms":[{"name":"down regulation of F-9775B anabolism","type":"exact"},{"name":"down regulation of F-9775B biosynthesis","type":"exact"},{"name":"down regulation of F-9775B biosynthetic process","type":"exact"},{"name":"down regulation of F-9775B formation","type":"exact"},{"name":"down regulation of F-9775B synthesis","type":"exact"},{"name":"down-regulation of F-9775B anabolism","type":"exact"},{"name":"down-regulation of F-9775B biosynthesis","type":"exact"},{"name":"down-regulation of F-9775B biosynthetic process","type":"exact"},{"name":"down-regulation of F-9775B formation","type":"exact"},{"name":"down-regulation of F-9775B synthesis","type":"exact"},{"name":"downregulation of F-9775B anabolism","type":"exact"},{"name":"downregulation of F-9775B biosynthesis","type":"exact"},{"name":"downregulation of F-9775B biosynthetic process","type":"exact"},{"name":"downregulation of F-9775B formation","type":"exact"},{"name":"downregulation of F-9775B synthesis","type":"exact"},{"name":"inhibition of F-9775B anabolism","type":"exact"},{"name":"inhibition of F-9775B biosynthesis","type":"exact"},{"name":"inhibition of F-9775B biosynthetic process","type":"narrow"},{"name":"inhibition of F-9775B formation","type":"exact"},{"name":"inhibition of F-9775B synthesis","type":"exact"},{"name":"negative regulation of F-9775B anabolism","type":"exact"},{"name":"negative regulation of F-9775B biosynthesis","type":"exact"},{"name":"negative regulation of F-9775B formation","type":"exact"},{"name":"negative regulation of F-9775B synthesis","type":"exact"}],"termid":"GO:1900676"}


id: PBO:0063024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 4","termid":"PBO:0063024"}


id: FYPO:0002645
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of threonine residues in one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete decreased protein threonine phosphorylation during vegetative growth (obsolete FYPO:0002645)","synonyms":[{"name":"decreased peptidyl-threonine phosphorylation during vegetative growth","type":"exact"},{"name":"decreased protein threonine phosphorylation during mitotic cell cycle","type":"related"},{"name":"decreased threonine phosphorylation during vegetative growth","type":"exact"},{"name":"reduced protein threonine phosphorylation during vegetative growth","type":"exact"}],"termid":"FYPO:0002645"}


id: PBO:0003827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AAA family ATPase Rix7 (predicted)","termid":"PBO:0003827"}


id: GO:0035657
data:
  {"annotated_genes":["SJAG_04890","SJAG_03949"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[92313,92577],"is_not":false,"summary":null,"term":"GO:0035657"}]},"cv_name":"cellular_component","definition":"A protein complex required for the methylation of a glutamine (Gln) residue in the protein release factor eRF1. In S. cerevisiae, this complex consists of at least Trm112p and Mtq2p.","definition_xrefs":["PMID:20400505","GOC:rb","PMID:17008308"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase complex","termid":"GO:0034708"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03949":null,"SJAG_04890":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"eRF1 methyltransferase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"eRF1 MTase complex","type":"exact"}],"termid":"GO:0035657","terms_by_termid":{"GO:0035657":null}}


id: FYPO:0005851
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the biotinylation of one or more specific proteins is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein modification during vegetative growth","termid":"FYPO:0000329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002274","FYPO:0002494","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal protein biotinylation during vegetative growth","synonyms":[{"name":"abnormal protein biotinylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005851"}


id: PATO:0001228
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001228 dull (obsolete PATO:0001228)","termid":"PATO:0001228"}


id: GO:0150019
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a basal dendrite are generated and organized.","definition_xrefs":["PMID:22683681","GOC:bc","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dendrite morphogenesis","termid":"GO:0048813"},{"relation_name":"part_of","term_name":"basal dendrite development","termid":"GO:0150018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"basal dendrite morphogenesis","termid":"GO:0150019"}


id: PBO:0034487
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_proteolysis_during_vegetative_growth","termid":"PBO:0034487"}


id: PBO:0078316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor delta diversity 1","termid":"PBO:0078316"}


id: PBO:0050118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1 pseudogene 28","termid":"PBO:0050118"}


id: PBO:0038564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABITRAM pseudogene 1","termid":"PBO:0038564"}


id: PBO:0081000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 38","termid":"PBO:0081000"}


id: GO:1901605
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data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L38","termid":"PBO:0059280"}


id: GO:1901349
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a glucosinolate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"},{"relation_name":"is_a","term_name":"sulfur compound transport","termid":"GO:0072348"},{"relation_name":"is_a","term_name":"carbohydrate derivative transport","termid":"GO:1901264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"glucosinolate transport","termid":"GO:1901349"}


id: FYPO:0001058
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the import of one or more amino acids into the cell occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal amino acid import","termid":"FYPO:0001057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased amino acid import","synonyms":[{"name":"decreased amino acid import across plasma membrane","type":"exact"},{"name":"decreased amino acid import into cell","type":"exact"},{"name":"decreased amino acid uptake","type":"exact"},{"name":"reduced amino acid import","type":"exact"}],"termid":"FYPO:0001058"}


id: PBO:0018271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO activating enzyme E1-type Uba2 (predicted)","termid":"PBO:0018271"}


id: FYPO:0002263
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that enters the cell cycle but then becomes elongated and undergoes cell cycle arrest, and eventually dies without completing cell division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division, cell cycle arrest","termid":"FYPO:0001924"},{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division, elongated cell","termid":"FYPO:0004603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001320","FYPO:0001985","FYPO:0000005","FYPO:0000002","FYPO:0005447","FYPO:0000004"],"is_obsolete":false,"name":"inviable after spore germination, without cell division, cell cycle arrest, elongated cell","synonyms":[{"name":"inviable germinated spore, without cell division, cell cycle arrest, elongated cell","type":"exact"},{"name":"lethal after spore germination, without cell division, cell cycle arrest, elongated cell","type":"exact"}],"termid":"FYPO:0002263"}


id: PBO:0084173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"High osmolarity-regulated gene of unknown function","termid":"PBO:0084173"}


id: PBO:0017664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces pombe specific protein Mug114","termid":"PBO:0017664"}


id: GO:0015817
data:
  {"annotated_genes":["SJAG_03400","SJAG_03256"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93461],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0089708"},{"annotations":[99915],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090513"}]},"cv_name":"biological_process","definition":"The directed movement of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"basic amino acid transport","termid":"GO:0015802"},{"relation_name":"is_a","term_name":"carboxylic acid transport","termid":"GO:0046942"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03256":null,"SJAG_03400":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"histidine transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"L-histidine transport","type":"narrow"}],"termid":"GO:0015817","terms_by_termid":{"GO:0089708":null,"GO:0090513":null}}


id: GO:0090034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of chaperone-mediated protein complex assembly. Chaperone-mediated protein complex assembly is the aggregation, arrangement and bonding together of a set of components to form a protein complex, mediated by chaperone molecules that do not form part of the finished complex.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein-containing complex assembly","termid":"GO:0043254"},{"relation_name":"regulates","term_name":"chaperone-mediated protein complex assembly","termid":"GO:0051131"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"regulation of chaperone-mediated protein complex assembly","termid":"GO:0090034"}


id: PBO:0049861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heart development protein with EGF like domains 1","termid":"PBO:0049861"}


id: PBO:0070925
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 33","termid":"PBO:0070925"}


id: PBO:0043956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crystallin gamma A","termid":"PBO:0043956"}


id: GO:0046101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of hypoxanthine, 6-hydroxy purine, an intermediate in the degradation of adenylate. Its ribonucleoside is known as inosine and its ribonucleotide as inosinate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleobase biosynthetic process","termid":"GO:0009113"},{"relation_name":"is_a","term_name":"hypoxanthine metabolic process","termid":"GO:0046100"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"hypoxanthine biosynthetic process","synonyms":[{"name":"hypoxanthine anabolism","type":"exact"},{"name":"hypoxanthine biosynthesis","type":"exact"},{"name":"hypoxanthine formation","type":"exact"},{"name":"hypoxanthine synthesis","type":"exact"}],"termid":"GO:0046101"}


