# terms

id: PBO:0060154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-RNR2 like 2 (pseudogene)","termid":"PBO:0060154"}


id: PBO:0083018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Deleted ORF; does not encode a discrete protein; YFR024C was originally annotated as a separate ORF, but was later removed because it was demonstrated to be theC-terminus of LSB3/YFR024C-A","termid":"PBO:0083018"}


id: GO:1990786
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded DNA stimulus.","definition_xrefs":["PMID:10051633"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"},{"relation_name":"is_a","term_name":"response to dsDNA","termid":"GO:1990784"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to dsDNA","termid":"GO:1990786"}


id: GO:0042381
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which factors in the hemolymph (the invertebrate equivalent of vertebrate blood and lymph) precipitate into insoluble clots in order to prevent loss of body fluid, and at the same time prevent the movement of microbes. Hemolymph coagulation is also part of the invertebrate humoral immune response.","definition_xrefs":["ISBN:0198506732","PMID:11915949","PMID:10561606","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"humoral immune response","termid":"GO:0006959"},{"relation_name":"is_a","term_name":"hemostasis","termid":"GO:0007599"},{"relation_name":"is_a","term_name":"innate immune response","termid":"GO:0045087"},{"relation_name":"is_a","term_name":"coagulation","termid":"GO:0050817"},{"relation_name":"part_of","term_name":"wound healing","termid":"GO:0042060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hemolymph coagulation","synonyms":[{"name":"hemolymph clotting","type":"exact"}],"termid":"GO:0042381"}


id: GO:1903324
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of snoRNA metabolic process.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of RNA metabolic process","termid":"GO:0051253"},{"relation_name":"is_a","term_name":"regulation of snoRNA metabolic process","termid":"GO:1903323"},{"relation_name":"negatively_regulates","term_name":"sno(s)RNA metabolic process","termid":"GO:0016074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016074"},{"rel_name":"negatively_regulates","termid":"GO:0016074"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0016074"],"is_obsolete":false,"name":"negative regulation of snoRNA metabolic process","synonyms":[{"name":"down regulation of snoRNA metabolic process","type":"exact"},{"name":"down regulation of snoRNA metabolism","type":"exact"},{"name":"down-regulation of snoRNA metabolic process","type":"exact"},{"name":"down-regulation of snoRNA metabolism","type":"exact"},{"name":"downregulation of snoRNA metabolic process","type":"exact"},{"name":"downregulation of snoRNA metabolism","type":"exact"},{"name":"inhibition of snoRNA metabolic process","type":"narrow"},{"name":"inhibition of snoRNA metabolism","type":"narrow"},{"name":"negative regulation of snoRNA metabolism","type":"exact"}],"termid":"GO:1903324"}


id: GO:0050524
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: coenzyme B + methyl-coenzyme M = coenzyme M-coenzyme B heterodisulfide + methane. Methyl-CoM is also known as 2-(methylthio)ethanesulfonate, coenzyme B as N-(7-mercaptoheptanoyl)threonine 3-O-phosphate, and coenzyme M-coenzyme B heterodisulfide as CoM-S-S-CoB.","definition_xrefs":["EC:2.8.4.1","RHEA:12532"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkylthioltransferase activity","termid":"GO:0050497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016782"],"is_obsolete":false,"name":"coenzyme-B sulfoethylthiotransferase activity","secondary_identifiers":["UM-BBD_reactionID:r0356","GO:0018552","KEGG_REACTION:R04541","MetaCyc:METHYL-COM-HTP-RXN"],"synonyms":[{"name":"2-(methylthio)ethanesulfonate:N-(7-thioheptanoyl)-3-O-phosphothreonine S-(2-sulfoethyl)thiotransferase activity","type":"related"},{"name":"coenzyme-B sulphoethylthiotransferase activity","type":"exact"},{"name":"methyl coenzyme M reductase activity","type":"related"},{"name":"methyl-CoM reductase activity","type":"related"},{"name":"methyl-coenzyme-M reductase activity","type":"exact"}],"termid":"GO:0050524"}


id: GO:0045259
data:
  {"annotated_genes":["SJAG_02564","SJAG_04122","SJAG_00438","SJAG_MIT15","SJAG_00836","SJAG_00915","SJAG_MIT09","SJAG_05204","SJAG_MIT37","SJAG_03114","SJAG_02105","SJAG_00133","SJAG_03925","SJAG_00985","SJAG_07003","SJAG_02598","SJAG_00542"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89970,115086,103969,115077,97896,115082,99767,89371,90943],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000276"},{"annotations":[85264],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005754"},{"annotations":[99117,104855,88946,101065],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005756"},{"annotations":[99738,111907,103879],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000274"}]},"cv_name":"cellular_component","definition":"A proton-transporting two-sector ATPase complex that catalyzes the phosphorylation of ADP to ATP during oxidative phosphorylation. The complex comprises a membrane sector (F0) that carries out proton transport and a cytoplasmic compartment sector (F1) that catalyzes ATP synthesis by a rotational mechanism; the extramembrane sector (containing 3 a and 3 b subunits) is connected via the d-subunit to the membrane sector by several smaller subunits. Within this complex, the g and e subunits and the 9-12 c subunits rotate by consecutive 120 degree angles and perform parts of ATP synthesis. This movement is driven by the hydrogen ion electrochemical potential gradient.","definition_xrefs":["ISBN:0716743663","ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton-transporting two-sector ATPase complex","termid":"GO:0016469"},{"relation_name":"is_a","term_name":"cation channel complex","termid":"GO:0034703"},{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00133":null,"SJAG_00438":null,"SJAG_00542":null,"SJAG_00836":null,"SJAG_00915":null,"SJAG_00985":null,"SJAG_02105":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_03114":null,"SJAG_03925":null,"SJAG_04122":null,"SJAG_05204":null,"SJAG_07003":null,"SJAG_MIT09":null,"SJAG_MIT15":null,"SJAG_MIT37":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"proton-transporting ATP synthase complex","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0045255"],"synonyms":[{"name":"F1-F0 complex","type":"exact"},{"name":"hydrogen-translocating F-type ATPase complex","type":"exact"},{"name":"hydrogen-transporting ATP synthase complex","type":"exact"},{"name":"proton-transporting F-type ATPase complex","type":"related"}],"termid":"GO:0045259","terms_by_termid":{"GO:0000274":null,"GO:0000276":null,"GO:0005754":null,"GO:0005756":null}}


id: PBO:0017593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi phosphoprotein 3 family Vps74 (predicted)","termid":"PBO:0017593"}


id: PATO:0001733
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a plant by virtue of the bearer's disposition to retain foliage.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shedability","termid":"PATO:0001729"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"evergreen (plant)","termid":"PATO:0001733"}


id: GO:0090500
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transition where an endocardial cushion cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac epithelial to mesenchymal transition","termid":"GO:0060317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endocardial cushion to mesenchymal transition","termid":"GO:0090500"}


id: PR:Q9UT11
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- zrt2 gene.","definition_xrefs":["UniProtKB:Q9UT11","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized zinc transporter P8A3.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAP8A3.03","synonyms":[{"name":"Spom972h-zrt2","type":"exact"}],"termid":"PR:Q9UT11"}


id: PBO:0080770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-linked Kx blood group antigen, Kell and VPS13A binding protein","termid":"PBO:0080770"}


id: PBO:0076152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUGCT antisense RNA 1","termid":"PBO:0076152"}


id: PBO:0044560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deleted in azoospermia 1","termid":"PBO:0044560"}


id: GO:0019893
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA replication inhibitor (obsolete GO:0019893)","synonyms":[{"name":"DNA replication inhibitor","type":"exact"}],"termid":"GO:0019893"}


id: GO:0070760
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of an interleukin-35-mediated signaling pathway.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine-mediated signaling pathway","termid":"GO:0001961"},{"relation_name":"is_a","term_name":"regulation of interleukin-35-mediated signaling pathway","termid":"GO:0070758"},{"relation_name":"positively_regulates","term_name":"interleukin-35-mediated signaling pathway","termid":"GO:0070757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of interleukin-35-mediated signaling pathway","synonyms":[{"name":"positive regulation of IL-35-mediated signaling pathway","type":"exact"},{"name":"positive regulation of interleukin-35-mediated signalling pathway","type":"exact"}],"termid":"GO:0070760"}


id: GO:0071861
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a tachykinin receptor.","definition_xrefs":["GOC:mah","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor binding","termid":"GO:0071855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"tachykinin receptor binding","termid":"GO:0071861"}


id: GO:0046081
data:
  {"annotated_genes":["SJAG_04487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95076],"is_not":false,"summary":null,"term":"GO:0046081"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of dUTP, deoxyuridine (5'-)triphosphate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside triphosphate catabolic process","termid":"GO:0009213"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleotide catabolic process","termid":"GO:0009223"},{"relation_name":"is_a","term_name":"dUTP metabolic process","termid":"GO:0046080"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04487":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"dUTP catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"dUTP breakdown","type":"exact"},{"name":"dUTP catabolism","type":"exact"},{"name":"dUTP degradation","type":"exact"}],"termid":"GO:0046081","terms_by_termid":{"GO:0046081":null}}


id: SO:0001568
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that changes the process of splicing.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcript_variant","termid":"SO:0001576"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing_variant","synonyms":[{"name":"Jannovar:splicing_variant","type":"exact"},{"name":"splicing variant","type":"exact"}],"termid":"SO:0001568"}


id: PBO:0071672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37 pseudogene 4","termid":"PBO:0071672"}


id: PBO:0044307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b5 reductase 2","termid":"PBO:0044307"}


id: SO:0000739
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"DNA belonging to the genome of a plastid such as a chloroplast. The nucleomorph is the nuclei of the plastic.","direct_ancestors":[{"relation_name":"is_a","term_name":"organelle_sequence","termid":"SO:0000736"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleomorphic_sequence","synonyms":[{"name":"nucleomorphic sequence","type":"exact"}],"termid":"SO:0000739"}


id: GO:0044430
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of the cytoskeleton, a cellular scaffolding or skeleton that maintains cell shape, enables some cell motion (using structures such as flagella and cilia), and plays important roles in both intra-cellular transport (e.g. the movement of vesicles and organelles) and cellular division. Includes constituent parts of intermediate filaments, microfilaments, microtubules, and the microtrabecular lattice.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cytoskeletal part (obsolete GO:0044430)","secondary_identifiers":["NIF_Subcellular:sao1635329413"],"synonyms":[{"name":"cytoskeletal element","type":"exact"},{"name":"cytoskeleton component","type":"exact"}],"termid":"GO:0044430"}


id: FYPO:0004269
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dissolution of the cell septum edging material is abnormal; may result in the formation of chains of attached cells.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell separation after cytokinesis","termid":"FYPO:0000164"},{"relation_name":"is_a","term_name":"abnormal cellular component organization during vegetative growth","termid":"FYPO:0001353"},{"relation_name":"is_a","term_name":"abnormal metabolic process during vegetative growth","termid":"FYPO:0001363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal cell septum edging catabolic process","synonyms":[{"name":"abnormal cell septum edging catabolic process during mitotic cell cycle","type":"related"},{"name":"abnormal cell septum edging catabolic process during vegetative growth","type":"exact"},{"name":"abnormal cell septum edging catabolism","type":"exact"},{"name":"abnormal cell septum edging hydrolysis","type":"exact"},{"name":"chained cells","type":"related"}],"termid":"FYPO:0004269"}


id: PBO:0085614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in DNA replication; component of the Mcm2-7 hexameric helicase complex that binds chromatin as a part of the pre-replicative complex; forms a subcomplex with Mcm4p and Mcm7p","termid":"PBO:0085614"}


id: PBO:0068061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 366","termid":"PBO:0068061"}


id: GO:0098570
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side (leaflet) of the plastid inner membrane that faces the stroma, and any proteins embedded in it or loosely bound to its surface.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"side of membrane","termid":"GO:0098552"},{"relation_name":"part_of","term_name":"plastid inner membrane","termid":"GO:0009528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"stromal side of plastid inner membrane","termid":"GO:0098570"}


id: GO:0072551
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: diferuloyl mono-(hydroxyferuloyl) spermidine + NADPH + O2 = monoferuloyl di-(hydroxyferuloyl) spermidine + NADP+ + H2O.","definition_xrefs":["GOC:kad","PMID:19779199"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tri-(feruloyl or hydroxyferuloyl) spermidine meta-hydroxylase activity","termid":"GO:0072532"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"diferuloyl mono-(hydroxyferuloyl) spermidine meta-hydroxylase activity","termid":"GO:0072551"}


id: GO:0001097
data:
  {"annotated_genes":["SJAG_00159"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75211],"is_not":false,"summary":null,"term":"GO:0001097"}]},"cv_name":"molecular_function","definition":"Binding to a general RNA polymerase II transcription factor belonging to the TFIIH complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II.","definition_xrefs":["GOC:krc","PMID:16858867"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II general transcription initiation factor binding","termid":"GO:0001091"},{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00159":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"TFIIH-class transcription factor complex binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"TFIIH-class transcription factor binding","type":"exact"}],"termid":"GO:0001097","terms_by_termid":{"GO:0001097":null}}


id: PBO:0073684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sirtuin 6","termid":"PBO:0073684"}


id: PBO:0059768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 42","termid":"PBO:0059768"}


id: PBO:0030310
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_in_germinating_spore","termid":"PBO:0030310"}


id: PBO:0058181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4475","termid":"PBO:0058181"}


id: PBO:0043027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"charged multivesicular body protein 2B","termid":"PBO:0043027"}


id: GO:1900230
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of single-species biofilm formation in or on host organism.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of single-species biofilm formation","termid":"GO:1900192"},{"relation_name":"is_a","term_name":"regulation of single-species biofilm formation in or on host organism","termid":"GO:1900228"},{"relation_name":"positively_regulates","term_name":"single-species biofilm formation in or on host organism","termid":"GO:0044407"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of single-species biofilm formation in or on host organism","synonyms":[{"name":"activation of single-species biofilm formation in or on host organism","type":"narrow"},{"name":"up regulation of single-species biofilm formation in or on host organism","type":"exact"},{"name":"up-regulation of single-species biofilm formation in or on host organism","type":"exact"},{"name":"upregulation of single-species biofilm formation in or on host organism","type":"exact"}],"termid":"GO:1900230"}


id: PBO:0064877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory subunit 36","termid":"PBO:0064877"}


id: PBO:0011404
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cell,_anatomy,_cellular_component,_biological_process_and_developmental_stage","termid":"PBO:0011404"}


id: FYECO:0000031
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which potassium ions were added to the assay buffer in excess compared to standard assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ ions","termid":"FYECO:0000030"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ K ions","synonyms":[{"name":"potassium ions added","type":"exact"}],"termid":"FYECO:0000031"}


id: PBO:0087597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the BLOC-1 complex involved in endosomal maturation; interacts with Msb3p; green fluorescent protein (GFP)-fusion protein localizes to endosomes","termid":"PBO:0087597"}


id: PATO:0000713
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000713 relative time value (obsolete PATO:0000713)","termid":"PATO:0000713"}


id: GO:0004958
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with prostaglandin F (PGF (2-alpha)) to initiate a change in cell activity.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prostaglandin receptor activity","termid":"GO:0004955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"prostaglandin F receptor activity","synonyms":[{"name":"PGF receptor activity","type":"related"},{"name":"PGF(2-alpha) receptor activity","type":"exact"}],"termid":"GO:0004958"}


id: GO:0008794
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: arsenate + reduced glutaredoxin = arsenite + oxidized glutaredoxin. Glutaredoxin functions as the electron donor for arsenate reduction. The electron flow therefore is ( NADPH -> glutathione reductase (EC:1.6.4.2) -> ) glutathione -> glutaredoxin -> arsenate reductase, i.e. glutathione is reduced by glutathione reductase and glutaredoxin is reduced by glutathione.","definition_xrefs":["EC:1.20.4.1","GOC:kd","PMID:10593884"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arsenate reductase activity","termid":"GO:0030611"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on phosphorus or arsenic in donors, disulfide as acceptor","termid":"GO:0030614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"arsenate reductase (glutaredoxin) activity","secondary_identifiers":["RHEA:22016","UM-BBD_reactionID:r0635","MetaCyc:RXN-982"],"synonyms":[{"name":"glutharedoxin:arsenate oxidoreductase activity","type":"related"}],"termid":"GO:0008794"}


id: PBO:0043393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxymethylenebutenolidase homolog","termid":"PBO:0043393"}


id: PBO:0085206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Outer mitochondrial membrane GTPase, subunit of the ERMES complex; potential regulatory subunit of the ERMES complex that links the ER to mitochondria and may promote inter-organellar calcium and phospholipid exchange as well as coordinating mitochondrial DNA replication and growth; cells lacking Gem1p contain collapsed, globular, or grape-like mitochondria; ortholog of metazoan Miro GTPases","termid":"PBO:0085206"}


id: PBO:0057842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3156-2","termid":"PBO:0057842"}


id: PBO:0047457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ficolin 1","termid":"PBO:0047457"}


id: GO:0036377
data:
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id: PBO:0046199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin A3 family member C, pseudogene","termid":"PBO:0046199"}


id: GO:0140896
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the binding of a double-stranded DNA or RNA from another organism to cytosolic cyclic GMP-AMP (cGAMP) synthase (cGAS) that activates innate immune responses through production of the second messenger cGAMP, which activates the adaptor STING.","definition_xrefs":["PMID:27648547","PMID:34261127","PMID:34261128"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0002753"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"cGAS/STING signaling pathway","termid":"GO:0140896"}


id: MOD:01290
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because redundant and identical to MOD:00465. Remap to MOD:00465.","definition_xrefs":["PubMed:12175151","Unimod:425","PubMed:11857757","PubMed:12686488","PubMed:9252331"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:01290 dihydroxylated residue - site F (obsolete MOD:01290)","synonyms":[{"name":"Dioxidation","type":"related"},{"name":"dihydroxy","type":"related"}],"termid":"MOD:01290"}


id: SO:0002053
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant whereby new or enhanced function is conferred on the gene product.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"functionally_abnormal","termid":"SO:0002218"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gain_of_function_variant","synonyms":[{"name":"gain of function variant","type":"exact"}],"termid":"SO:0002053"}


id: PR:O74956
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mrps8 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74956"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"37S ribosomal protein subunit S8, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC736.10c","synonyms":[{"name":"Spom972h-mrps8","type":"exact"}],"termid":"PR:O74956"}


id: PBO:0031666
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_modification_during_vegetative_growth","termid":"PBO:0031666"}


id: PBO:0028995
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_proline_import","termid":"PBO:0028995"}


id: SO:0002026
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The nucleotide sequence which encodes the intein portion of the precursor gene.","definition_xrefs":["PMID:8165123"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene_component_region","termid":"SO:0000842"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intein_encoding_region","termid":"SO:0002026"}


id: GO:0007059
data:
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id: PBO:0055761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA imatinib upregulated","termid":"PBO:0055761"}


id: PBO:0055560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2996","termid":"PBO:0055560"}


id: PBO:0063169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAX interacting protein 1","termid":"PBO:0063169"}


id: PBO:0004748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-5' exoribonuclease subunit Dis3 (predicted)","termid":"PBO:0004748"}


id: MOD:01940
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that crosslinks an asparagine and the following glutamic acid residue with the formation of (2-aminosuccinimidyl)pentanedioic acid and the release of ammonia.","definition_xrefs":["RESID:AA0593#ASN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-(2-aminosuccinimidyl)pentanedioic acid","termid":"MOD:01946"},{"relation_name":"is_a","term_name":"crosslinked L-asparagine residue","termid":"MOD:02042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-(2-aminosuccinimidyl)pentanedioic acid (Asn)","synonyms":[{"name":"(4S)-4-[(3S)-3-amino-2,5-dioxopyrrolidin-1-yl]-5-oxopentanoic acid","type":"exact"},{"name":"2-(2-aminosuccinimidyl)pentanedioic acid","type":"exact"},{"name":"aspartimide glutamic acid","type":"exact"}],"termid":"MOD:01940"}


id: GO:0120338
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the radial spoke 3 that is orthogonal to the elongated stalk and which projects towards the central pair of microtubules within the ciliary axoneme.","definition_xrefs":["PMID:22754630","PMID:348711799","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"radial spoke head","termid":"GO:0001535"},{"relation_name":"part_of","term_name":"radial spoke 3","termid":"GO:0120335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"radial spoke head 3","synonyms":[{"name":"radial spokehead 3","type":"exact"}],"termid":"GO:0120338"}


id: PBO:0063893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class Q pseudogene 1","termid":"PBO:0063893"}


id: PBO:0039601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acidic nuclear phosphoprotein 32 family member B pseudogene 2","termid":"PBO:0039601"}


id: PBO:0047207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 220 member A","termid":"PBO:0047207"}


id: GO:0003731
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Interacting selectively with the 7-methylguanosine cap at the 5' end of a nascent messenger RNA transcript.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete mRNA cap binding (obsolete GO:0003731)","synonyms":[{"name":"mRNA cap binding","type":"exact"}],"termid":"GO:0003731"}


id: PBO:0076282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synapse defective Rho GTPase homolog 2","termid":"PBO:0076282"}


id: PBO:0072162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 39","termid":"PBO:0072162"}


id: PBO:0052978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lactamase beta","termid":"PBO:0052978"}


id: GO:0033559
data:
  {"annotated_genes":["SJAG_00099","SJAG_03943"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[69213,110470],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006636"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid metabolic process","termid":"GO:0006631"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00099":null,"SJAG_03943":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"unsaturated fatty acid metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PWY-782","MetaCyc:PWY-762"],"synonyms":[{"name":"unsaturated fatty acid metabolism","type":"exact"}],"termid":"GO:0033559","terms_by_termid":{"GO:0006636":null}}


id: GO:0043898
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,3-dihydroxybiphenyl + O2 = 2-hydroxy-6-phenylhexa-2,4-dienoic acid.","definition_xrefs":["GOC:jl","PMID:15715866"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"2,3-dihydroxybiphenyl 1,2-dioxygenase activity","synonyms":[{"name":"2,3-dihydroxybiphenyl-1,2-dioxygenase activity","type":"exact"},{"name":"BphC","type":"related"}],"termid":"GO:0043898"}


id: PBO:0075110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 159","termid":"PBO:0075110"}


id: GO:0018901
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 2,4-dichlorophenoxyacetic acid, a chlorinated phenoxy compound which functions as a systemic herbicide and is used to control many types of broadleaf weeds.","definition_xrefs":["UM-BBD_pathwayID:2,4d"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"2,4-dichlorophenoxyacetic acid metabolic process","secondary_identifiers":["UM-BBD_pathwayID:2\\,4-d"],"synonyms":[{"name":"2,4-D metabolic process","type":"exact"},{"name":"2,4-D metabolism","type":"exact"},{"name":"2,4-dichlorophenoxyacetic acid metabolism","type":"exact"}],"termid":"GO:0018901"}


id: GO:0002203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The hydrolysis of a peptide bond or bonds within a protein by cytosolic resident proteases during antigen processing and presentation.","definition_xrefs":["ISBN:0781735149","PMID:15224092","GOC:add","PMID:15771591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteolysis associated with antigen processing and presentation","termid":"GO:0002496"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"proteolysis by cytosolic proteases associated with antigen processing and presentation","termid":"GO:0002203"}


id: GO:0071812
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate or extent of fever generation via positive regulation of the frequency, rate or extent of the regulated release of a prostaglandin from a cell.","definition_xrefs":["GOC:dph","GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of fever generation","termid":"GO:0031622"},{"relation_name":"is_a","term_name":"positive regulation of prostaglandin secretion","termid":"GO:0032308"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of fever generation by positive regulation of prostaglandin secretion","termid":"GO:0071812"}


id: GO:0140679
data:
  {"annotated_genes":["SJAG_04167"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[108415],"is_not":false,"summary":null,"term":"GO:0140679"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na(in) = ADP + phosphate + Na(out).","definition_xrefs":["PMID:9106203"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sodium ion transmembrane transporter activity","termid":"GO:0015081"},{"relation_name":"is_a","term_name":"ATPase-coupled monoatomic cation transmembrane transporter activity","termid":"GO:0019829"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04167":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"ABC-type sodium transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN-17739","EC:7.2.2.4","RHEA:14633","TC:3.A.1.115.1"],"termid":"GO:0140679","terms_by_termid":{"GO:0140679":null}}


id: PBO:0084157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"High affinity sulfate permease of the SulP anion transporter family; sulfate uptake is mediated by specific sulfate transporters Sul1p and Sul2p, which control the concentration of endogenous activated sulfate intermediates","termid":"PBO:0084157"}


id: PBO:0109379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 10","termid":"PBO:0109379"}


id: PBO:0059605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 17","termid":"PBO:0059605"}


id: PBO:0075277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 19 pseudogene 2","termid":"PBO:0075277"}


id: PBO:0001035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human 4F5S homolog","termid":"PBO:0001035"}


id: PBO:0055787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"loricrin cornified envelope precursor protein","termid":"PBO:0055787"}


id: GO:0009815
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-aminocyclopropane-1-carboxylate + L-ascorbate + O2 = CO2 + dehydroascorbate + ethylene + 2 H2O + hydrogen cyanide. Ethene is also known as ethylene.","definition_xrefs":["RHEA:23640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen","termid":"GO:0016715"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"1-aminocyclopropane-1-carboxylate oxidase activity","secondary_identifiers":["MetaCyc:ETHYL-RXN","EC:1.14.17.4","KEGG_REACTION:R07214"],"synonyms":[{"name":"1-aminocyclopropane-1-carboxylate oxygenase (ethylene-forming)","type":"related"},{"name":"ACC oxidase activity","type":"exact"},{"name":"aminocyclopropanecarboxylate oxidase activity","type":"related"},{"name":"ethene-forming enzyme","type":"broad"},{"name":"ethylene-forming enzyme","type":"broad"}],"termid":"GO:0009815"}


id: GO:0015179
data:
  {"annotated_genes":["SJAG_04725","SJAG_00626","SJAG_00522","SJAG_04637","SJAG_00543","SJAG_03899","SJAG_03256","SJAG_03400","SJAG_04588","SJAG_04718","SJAG_04984","SJAG_02029"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[92135],"is_not":false,"summary":null,"term":"GO:0015179"},{"annotations":[96321,94325],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015187"},{"annotations":[92134],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034639"},{"annotations":[96444,93464,99926],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061459"},{"annotations":[98886,106096],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015182"},{"annotations":[92664],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015183"},{"annotations":[92665,99927,94326],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005313"},{"annotations":[93465,99928],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005290"},{"annotations":[98887,106097],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015188"},{"annotations":[106098,99929,98888,96445,93466],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015189"},{"annotations":[103977,94327],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000064"},{"annotations":[96436,97293],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015193"},{"annotations":[86743,99930],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015194"},{"annotations":[99931],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005302"}]},"cv_name":"molecular_function","definition":"Enables the transfer of an L-amino acid from one side of a membrane to the other. L-amino acids are the L-enantiomers of amino acids.","definition_xrefs":["GOC:jsg","GOC:ai","ISBN:0815340729","GOC:mtg_transport","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane transporter activity","termid":"GO:0015171"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transporter activity","termid":"GO:0046943"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00522":null,"SJAG_00543":null,"SJAG_00626":null,"SJAG_02029":null,"SJAG_03256":null,"SJAG_03400":null,"SJAG_03899":null,"SJAG_04588":null,"SJAG_04637":null,"SJAG_04718":null,"SJAG_04725":null,"SJAG_04984":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"L-amino acid transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-212614"],"synonyms":[{"name":"L-amino acid transporter activity","type":"broad"}],"termid":"GO:0015179","terms_by_termid":{"GO:0000064":null,"GO:0005290":null,"GO:0005302":null,"GO:0005313":null,"GO:0015179":null,"GO:0015182":null,"GO:0015183":null,"GO:0015187":null,"GO:0015188":null,"GO:0015189":null,"GO:0015193":null,"GO:0015194":null,"GO:0034639":null,"GO:0061459":null}}


id: PBO:0002319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IMPACT homolog, translational regulator (predicted)","termid":"PBO:0002319"}


id: GO:0097493
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell, providing elasticity and recoiling.","definition_xrefs":["PMID:23283722","GOC:rl","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structural molecule activity","termid":"GO:0005198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005198"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005198","GO:0003674"],"is_obsolete":false,"name":"structural molecule activity conferring elasticity","termid":"GO:0097493"}


id: GO:0070684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The reproductive process in which coagulated semen becomes liquid following ejaculation, allowing the progressive release of motile spermatozoa.","definition_xrefs":["PMID:18482984","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal reproductive process","termid":"GO:0048609"},{"relation_name":"part_of","term_name":"insemination","termid":"GO:0007320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"seminal clot liquefaction","synonyms":[{"name":"semen liquefaction","type":"exact"}],"termid":"GO:0070684"}


id: PBO:0030707
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_RNA_level_during_nitrogen_starvation","termid":"PBO:0030707"}


id: PBO:0040834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"baculoviral IAP repeat containing 8","termid":"PBO:0040834"}


id: FYPO:0003281
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of superoxide dismutase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular response to oxidative stress","termid":"FYPO:0000180"},{"relation_name":"is_a","term_name":"abnormal oxidoreductase activity","termid":"FYPO:0000689"},{"relation_name":"is_a","term_name":"abnormal metabolic process","termid":"FYPO:0000860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000707","FYPO:0000652","FYPO:0000298","FYPO:0000654","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal superoxide dismutase activity","termid":"FYPO:0003281"}


id: GO:0034075
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: oxidosqualene + H2O = arabidiol ((13R,14R,17E)-malabarica-17,21-diene-3beta,14-diol).","definition_xrefs":["GOC:cb","PMID:16774269","PMID:17474751"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidosqualene cyclase activity","termid":"GO:0031559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"arabidiol synthase activity","secondary_identifiers":["MetaCyc:RXN-9684","RHEA:31035","EC:4.2.1.124"],"termid":"GO:0034075"}


id: PBO:0070449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L3 pseudogene 6","termid":"PBO:0070449"}


id: PBO:0048447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GBX2 and ASB18 antisense RNA 1","termid":"PBO:0048447"}


id: PBO:0028531
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-explosive_cytokinetic_cell_separation_resulting_in_vegetative_cell_lysis","termid":"PBO:0028531"}


id: PBO:0066555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of G protein signaling 18","termid":"PBO:0066555"}


id: PBO:0066752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 50","termid":"PBO:0066752"}


id: PBO:0075686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRC proto-oncogene, non-receptor tyrosine kinase","termid":"PBO:0075686"}


id: PBO:0085720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in telomeric and mating-type locus silencing; interacts with Sir2p and also interacts with Gal11p, which is a component of the RNA pol II mediator complex; ESC8 has a paralog, IOC3, that arose from the whole genome duplication","termid":"PBO:0085720"}


id: GO:0030381
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regionalization process that gives rise to the structural pattern of a chorion-containing eggshell such as those found in insects.","definition_xrefs":["GOC:bf","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regionalization","termid":"GO:0003002"},{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"part_of","term_name":"chorion-containing eggshell formation","termid":"GO:0007304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chorion-containing eggshell pattern formation","termid":"GO:0030381"}


id: PBO:0030344
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_binding_during_cellular_response_to_hypoxia","termid":"PBO:0030344"}


id: PBO:0047080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAM135A antisense RNA 1","termid":"PBO:0047080"}


id: PBO:0110029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CFAP144 pseudogene 1","termid":"PBO:0110029"}


id: PBO:0064769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase like 1","termid":"PBO:0064769"}


id: PBO:0046160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E74 like ETS transcription factor 2","termid":"PBO:0046160"}


id: GO:0006070
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving octanol, the 8-carbon alcohol with the formula C8H17OH.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary alcohol metabolic process","termid":"GO:0034308"},{"relation_name":"is_a","term_name":"fatty alcohol metabolic process","termid":"GO:1903173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"octanol metabolic process","synonyms":[{"name":"octanol metabolism","type":"exact"}],"termid":"GO:0006070"}


id: PBO:0029473
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_elongated_tapered_vegetative_cell","termid":"PBO:0029473"}


id: GO:0005496
data:
  {"annotated_genes":["SJAG_02982","SJAG_01590","SJAG_00355","SJAG_03718","SJAG_00054","SJAG_01329","SJAG_02375","SJAG_01407","SJAG_04018","SJAG_02323","SJAG_01722"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90741],"is_not":false,"summary":null,"term":"GO:0005496"},{"annotations":[105439,98692,107394,90351,112290,104278],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008142"},{"annotations":[86546,102391,105925,97748],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032934"}]},"cv_name":"molecular_function","definition":"Binding to a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid binding","termid":"GO:0008289"},{"relation_name":"is_a","term_name":"organic cyclic compound binding","termid":"GO:0097159"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00054":null,"SJAG_00355":null,"SJAG_01329":null,"SJAG_01407":null,"SJAG_01590":null,"SJAG_01722":null,"SJAG_02323":null,"SJAG_02375":null,"SJAG_02982":null,"SJAG_03718":null,"SJAG_04018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0008289","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"steroid binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0005496","terms_by_termid":{"GO:0005496":null,"GO:0008142":null,"GO:0032934":null}}


id: PBO:0067763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 63","termid":"PBO:0067763"}


id: PBO:0081827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 750","termid":"PBO:0081827"}


id: GO:0019660
data:
  {"annotated_genes":["SJAG_04495","SJAG_05006","SJAG_03743","SJAG_01414","SJAG_00240","SJAG_03822","SJAG_03370"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94097],"is_not":false,"summary":null,"term":"GO:0019660"},{"annotations":[94815,94816,110677,110678,84656],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019655"},{"annotations":[92677],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:2001172"}]},"cv_name":"biological_process","definition":"Fermentation that includes the anaerobic conversion of glucose to pyruvate via the glycolytic pathway.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fermentation","termid":"GO:0006113"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00240":null,"SJAG_01414":null,"SJAG_03370":null,"SJAG_03743":null,"SJAG_03822":null,"SJAG_04495":null,"SJAG_05006":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"glycolytic fermentation","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:Pyruvate-Degradation"],"termid":"GO:0019660","terms_by_termid":{"GO:0019655":null,"GO:0019660":null,"GO:2001172":null}}


id: GO:0045007
data:
  {"annotated_genes":["SJAG_02261"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90965],"is_not":false,"summary":null,"term":"GO:0045007"}]},"cv_name":"biological_process","definition":"The disruption of the bond between the sugar in the backbone and the A or G base, causing the base to be removed and leaving a depurinated sugar.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"base-excision repair, AP site formation","termid":"GO:0006285"},{"relation_name":"is_a","term_name":"DNA modification","termid":"GO:0006304"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02261":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006281","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"depurination","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Depurination"],"termid":"GO:0045007","terms_by_termid":{"GO:0045007":null}}


id: GO:0043829
data:
  {"annotated_genes":["SJAG_04380"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100034],"is_not":false,"summary":null,"term":"GO:0043829"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: adenosine-37 + H2O = inosine-37 + NH3, in a tRNA-Ala molecule.","definition_xrefs":["PMID:9707437","RHEA:50968","PMID:8915538"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA-specific adenosine deaminase activity","termid":"GO:0008251"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04380":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016810","GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"tRNA-specific adenosine-37 deaminase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:3.5.4.34"],"synonyms":[{"name":"TAD1","type":"related"},{"name":"tRNA(Ala)-A37 deaminase activity","type":"exact"},{"name":"tRNA-specific adenosine deaminase 1","type":"exact"}],"termid":"GO:0043829","terms_by_termid":{"GO:0043829":null}}


id: PBO:0057856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3167","termid":"PBO:0057856"}


id: PATO:0000171
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000171 absolute yield (obsolete PATO:0000171)","termid":"PATO:0000171"}


id: MOD:01633
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively removes or replaces an L-asparagine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-asparagine residue","termid":"MOD:00903"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue removal","termid":"MOD:01651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-asparagine removal","termid":"MOD:01633"}


id: PBO:0053125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ligand dependent nuclear receptor corepressor like","termid":"PBO:0053125"}


id: GO:0002412
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of antigen transcytosis carried out by M cells in the mucosal-associated lymphoid tissue (MALT). Transcytosis is the process of the directed movement of endocytosed material through the cell and its exocytosis from the plasma membrane at the opposite side. M cells are specialized epithelia cells with a microfold structure that are adept at moving antigens from the gut lumen to antigen presenting cells in the MALT.","definition_xrefs":["ISBN:0781735149","PMID:12843411","GOC:jal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcytosis","termid":"GO:0045056"},{"relation_name":"part_of","term_name":"antigen sampling by M cells in mucosal-associated lymphoid tissue","termid":"GO:0002406"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0008150","GO:0016192","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"antigen transcytosis by M cells in mucosal-associated lymphoid tissue","synonyms":[{"name":"antigen transcytosis by M cells in MALT","type":"exact"},{"name":"antigen transport by M cells in MALT","type":"exact"},{"name":"antigen transport by M cells in mucosal-associated lymphoid tissue","type":"exact"}],"termid":"GO:0002412"}


id: GO:2000241
data:
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id: PBO:0003729
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id: PBO:0090098
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor Rst2","termid":"PBO:0090098"}


id: GO:0045737
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of CDK activity.","definition_xrefs":["GOC:pr","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cyclin-dependent protein serine/threonine kinase activity","termid":"GO:0000079"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle","termid":"GO:0045787"},{"relation_name":"is_a","term_name":"positive regulation of protein serine/threonine kinase activity","termid":"GO:0071902"},{"relation_name":"is_a","term_name":"positive regulation of cyclin-dependent protein kinase activity","termid":"GO:1904031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"positive regulation of cyclin-dependent protein serine/threonine kinase activity","synonyms":[{"name":"activation of cyclin-dependent protein kinase activity","type":"broad"},{"name":"positive regulation of CDK activity","type":"broad"},{"name":"positive regulation of cyclin-dependent protein kinase activity","type":"broad"},{"name":"stimulation of cyclin-dependent protein kinase activity","type":"broad"},{"name":"up regulation of cyclin-dependent protein kinase activity","type":"broad"},{"name":"up-regulation of cyclin-dependent protein kinase activity","type":"broad"},{"name":"upregulation of cyclin-dependent protein kinase activity","type":"broad"}],"termid":"GO:0045737"}


id: PBO:0089804
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id: PBO:0062700
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 51 subfamily E member 1","termid":"PBO:0062700"}


id: PBO:0050118
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1 pseudogene 28","termid":"PBO:0050118"}


id: PBO:0044942
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id: GO:0043033
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id: GO:0110050
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id: PBO:0049437
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GUSB pseudogene 14","termid":"PBO:0049437"}


id: PBO:0030356
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-branched,_elongated_cell_during_cellular_hyperosmotic_response","termid":"PBO:0030356"}


id: GO:0006607
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id: PBO:0091743
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  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cyclin-Dependent Kinase","termid":"PBO:0091743"}


id: PATO:0001235
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  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001235 strength value (obsolete PATO:0001235)","termid":"PATO:0001235"}


id: PBO:0068818
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 56, pseudogene","termid":"PBO:0068818"}


id: GO:0021999
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id: GO:0060033
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id: GO:0048843
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of axon extension involved in axon guidance.","definition_xrefs":["GOC:devbiol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of axon extension","termid":"GO:0030517"},{"relation_name":"is_a","term_name":"regulation of axon extension involved in axon guidance","termid":"GO:0048841"},{"relation_name":"is_a","term_name":"negative regulation of chemotaxis","termid":"GO:0050922"},{"relation_name":"negatively_regulates","term_name":"axon extension involved in axon guidance","termid":"GO:0048846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of axon extension involved in axon guidance","synonyms":[{"name":"down regulation of axon extension involved in axon guidance","type":"exact"},{"name":"down-regulation of axon extension involved in axon guidance","type":"exact"},{"name":"downregulation of axon extension involved in axon guidance","type":"exact"},{"name":"inhibition of axon extension involved in axon guidance","type":"narrow"}],"termid":"GO:0048843"}


id: FYPO:0007262
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, morphology, or other physical characteristic of the eisosome is abnormal. The eisosome consists of a furrow-like plasma membrane sub-domain and associated integral transmembrane proteins, and the proteins (eisosome filaments) that form a scaffolding lattice on the cytoplasmic face.","definition_xrefs":["GO:0032126","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abnormal eisosome","synonyms":[{"name":"abnormal eisosome during mitotic cell cycle","type":"related"},{"name":"abnormal eisosome during vegetative growth","type":"exact"},{"name":"abnormal eisosomes","type":"exact"}],"termid":"FYPO:0007262"}


id: GO:0102451
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: kaempferide + S-adenosyl-L-methionine = 3,4'-dimethylkaempferol + S-adenosyl-L-homocysteine.","definition_xrefs":["GOC:pz","EC:2.1.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016741","GO:0016740"],"is_obsolete":false,"name":"kaempferide 3-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-13937"],"termid":"GO:0102451"}


id: PBO:0043352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CLPTM1L pseudogene 1","termid":"PBO:0043352"}


id: GO:0043967
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H4 by the addition of an acetyl group.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H4 acetylation (obsolete GO:0043967)","termid":"GO:0043967"}


id: GO:0010338
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to a leaf. This process pertains to the initial formation of a structure from unspecified parts.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plant organ development","termid":"GO:0099402"},{"relation_name":"is_a","term_name":"plant organ formation","termid":"GO:1905393"},{"relation_name":"part_of","term_name":"leaf morphogenesis","termid":"GO:0009965"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leaf formation","termid":"GO:0010338"}


id: GO:0032496
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.","definition_xrefs":["ISBN:0721601464","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to molecule of bacterial origin","termid":"GO:0002237"},{"relation_name":"is_a","term_name":"response to lipid","termid":"GO:0033993"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to lipopolysaccharide","synonyms":[{"name":"response to LPS","type":"exact"},{"name":"response to endotoxin","type":"broad"}],"termid":"GO:0032496"}


id: PBO:0077841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor protein D52","termid":"PBO:0077841"}


id: GO:0080170
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which hydrogen peroxide is transported across a membrane.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"hydrogen peroxide transmembrane transport","synonyms":[{"name":"hydrogen peroxide membrane transport","type":"exact"}],"termid":"GO:0080170"}


id: PBO:0036480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial respiratory chain complex II assembly factor 4 Sdh8 (predicted)","termid":"PBO:0036480"}


id: PBO:0076184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfatase modifying factor 2","termid":"PBO:0076184"}


id: GO:1900355
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of methanofuran metabolic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of metabolic process","termid":"GO:0009892"},{"relation_name":"is_a","term_name":"regulation of methanofuran metabolic process","termid":"GO:1900354"},{"relation_name":"negatively_regulates","term_name":"methanofuran metabolic process","termid":"GO:2001119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of methanofuran metabolic process","synonyms":[{"name":"down regulation of methanofuran metabolic process","type":"exact"},{"name":"down regulation of methanofuran metabolism","type":"exact"},{"name":"down-regulation of methanofuran metabolic process","type":"exact"},{"name":"down-regulation of methanofuran metabolism","type":"exact"},{"name":"downregulation of methanofuran metabolic process","type":"exact"},{"name":"downregulation of methanofuran metabolism","type":"exact"},{"name":"inhibition of methanofuran metabolic process","type":"narrow"},{"name":"inhibition of methanofuran metabolism","type":"exact"},{"name":"negative regulation of methanofuran metabolism","type":"exact"}],"termid":"GO:1900355"}


id: PBO:0112396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein, G-patch type, alternative splicing factor 45","termid":"PBO:0112396"}


id: GO:2001266
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any Roundabout signaling pathway that is involved in axon guidance.","definition_xrefs":["GOC:bf","PMID:14527427","PMID:21820427"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Roundabout signaling pathway","termid":"GO:0035385"},{"relation_name":"part_of","term_name":"axon guidance","termid":"GO:0007411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"Roundabout signaling pathway involved in axon guidance","synonyms":[{"name":"ROBO signaling pathway involved in axon chemotaxis","type":"related"},{"name":"ROBO signaling pathway involved in axon growth cone guidance","type":"related"},{"name":"ROBO signaling pathway involved in axon guidance","type":"exact"},{"name":"ROBO signaling pathway involved in axon pathfinding","type":"exact"},{"name":"ROBO/SLIT signaling pathway involved in axon chemotaxis","type":"related"},{"name":"ROBO/SLIT signaling pathway involved in axon growth cone guidance","type":"related"},{"name":"ROBO/SLIT signaling pathway involved in axon guidance","type":"exact"},{"name":"ROBO/SLIT signaling pathway involved in axon pathfinding","type":"exact"},{"name":"Roundabout signaling pathway involved in axon chemotaxis","type":"related"},{"name":"Roundabout signaling pathway involved in axon growth cone guidance","type":"related"},{"name":"Roundabout signaling pathway involved in axon pathfinding","type":"exact"},{"name":"Roundabout signalling pathway involved in axon chemotaxis","type":"related"},{"name":"Roundabout signalling pathway involved in axon growth cone guidance","type":"related"},{"name":"Roundabout signalling pathway involved in axon guidance","type":"exact"},{"name":"Roundabout signalling pathway involved in axon pathfinding","type":"exact"}],"termid":"GO:2001266"}


id: GO:0017120
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the conversion of phosphatidylinositol-3-phosphate, phosphatidylinositol-4-phosphate, and phosphatidylinositol-3,5-bisphosphate, but not PI-4,5-bisphosphate, to phosphatidylinositol; PPIPase activity is a key regulator of membrane trafficking and actin cytoskeleton organization.","definition_xrefs":["PMID:10224048"],"gene_count":0,"genotype_count":0,"name":"obsolete polyphosphatidylinositol phosphatase activity (obsolete GO:0017120)","synonyms":[{"name":"polyphosphatidylinositol phosphatase activity","type":"exact"},{"name":"polyphosphoinositide phosphatase activity","type":"exact"}],"termid":"GO:0017120"}


id: GO:0030856
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of epithelial cell differentiation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell differentiation","termid":"GO:0045595"},{"relation_name":"is_a","term_name":"regulation of multicellular organismal development","termid":"GO:2000026"},{"relation_name":"regulates","term_name":"epithelial cell differentiation","termid":"GO:0030855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of epithelial cell differentiation","termid":"GO:0030856"}


id: PBO:0089983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding forkhead transcription factor Sep1","termid":"PBO:0089983"}


id: PBO:0060871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"negative elongation factor complex member C/D","termid":"PBO:0060871"}


id: PBO:0046829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid binding protein 5 pseudogene 2","termid":"PBO:0046829"}


id: GO:0018478
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-oxopropanoate + CoA + NAD(P)+ = acetyl-CoA + CO2 + NAD(P)H.","definition_xrefs":["EC:1.2.1.18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"malonate-semialdehyde dehydrogenase (acetylating) activity","secondary_identifiers":["MetaCyc:RXN-9958"],"synonyms":[{"name":"3-oxopropanoate:NAD(P)+ oxidoreductase (decarboxylating, CoA-acetylating)","type":"related"},{"name":"malonic semialdehyde oxidative decarboxylase activity","type":"exact"}],"termid":"GO:0018478"}


id: PBO:0030543
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_cAMP_level_during_glucose_starvation","termid":"PBO:0030543"}


id: PBO:0057557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 675","termid":"PBO:0057557"}


id: GO:0140333
data:
  {"annotated_genes":["SJAG_02897","SJAG_00669","SJAG_01945","SJAG_01731","SJAG_05209"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95560],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180013"},{"annotations":[90532,94033],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140345"},{"annotations":[96276,108567,94035,95562,90534],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090555"},{"annotations":[108569,95563],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140346"}]},"cv_name":"molecular_function","definition":"Catalysis of the movement of a glycerophospholipid from the exoplasmic to the cytosolic leaftlet of a membrane, using energy from the hydrolysis of ATP.","definition_xrefs":["PMID:26212235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid transporter activity","termid":"GO:0005548"},{"relation_name":"is_a","term_name":"flippase activity","termid":"GO:0140327"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00669":null,"SJAG_01731":null,"SJAG_01945":null,"SJAG_02897":null,"SJAG_05209":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0140303"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0140303"],"is_obsolete":false,"name":"glycerophospholipid flippase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"glycerophospholipid flippase activity (exoplasmic to cytosolic leaftlet)","type":"exact"}],"termid":"GO:0140333","terms_by_termid":{"GO:0090555":null,"GO:0140345":null,"GO:0140346":null,"GO:0180013":null}}


id: PR:O94529
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A FACT complex subunit SSRP1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03592","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FACT complex subunit pob3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC609.05","secondary_identifiers":["UniProtKB:O94529"],"synonyms":[{"name":"Spom972h-SSRP1","type":"exact"},{"name":"facilitates chromatin transcription complex subunit pob3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94529"}


id: GO:0030866
data:
  {"annotated_genes":["SJAG_03048","SJAG_02245","SJAG_00649","SJAG_00938","SJAG_00661","SJAG_01943","SJAG_04982","SJAG_04644","SJAG_03088","SJAG_01384","SJAG_01268","SJAG_04077","SJAG_00228","SJAG_02431","SJAG_00279","SJAG_04001","SJAG_03379","SJAG_04100","SJAG_00082","SJAG_04498","SJAG_03146","SJAG_03044","SJAG_01805","SJAG_00152","SJAG_04597","SJAG_02511","SJAG_01894","SJAG_03045","SJAG_04930","SJAG_02177","SJAG_00521","SJAG_03703","SJAG_04621","SJAG_00268","SJAG_03596","SJAG_01665","SJAG_02592","SJAG_04887","SJAG_02831","SJAG_01964","SJAG_03705","SJAG_03119","SJAG_04465","SJAG_04886","SJAG_02075","SJAG_04052","SJAG_03086","SJAG_02228","SJAG_01732","SJAG_02700","SJAG_02864","SJAG_00700","SJAG_03025","SJAG_01143","SJAG_04703"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95406,96253,99399,113938],"is_not":false,"summary":null,"term":"GO:0030866"},{"annotations":[84304,99149,107088,90898,110947,85956,86798,107732,108234,114877,99397,114525,99341,108257,106761,94017,95765,101222,103225,95939],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0000147"},{"annotations":[101205,94923,93821,94984,91389,101223,84409],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0044396"},{"annotations":[106870],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000915"},{"annotations":[85462,94387,94131,104205],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071520"},{"annotations":[101208,106871],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044837"},{"annotations":[98507,107938,114491,94132,113914,94987,94022,93824,91390,113089,73828,88641,114669,97342,98644,88428,115137,93748,108374,84413,88687],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903475"},{"annotations":[94133],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1903479"},{"annotations":[94988,98508,108375,84414,91391,113915,94134,97012,93749,96780],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1902404"},{"annotations":[98452],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1903500"},{"annotations":[86127,90514],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1903501"},{"annotations":[115335,90480,89914],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1903499"}]},"cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane.","definition_xrefs":["GOC:dph","GOC:pf","GOC:mah","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin cytoskeleton organization","termid":"GO:0030036"},{"relation_name":"is_a","term_name":"cortical cytoskeleton 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actin cytoskeleton organization","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:27059155":null,"PMID:32915139":null},"secondary_identifiers":["GO:0033109"],"synonyms":[{"name":"actin cortex stabilization","type":"exact"},{"name":"cortical actin cytoskeleton organisation","type":"exact"},{"name":"cortical actin cytoskeleton organization and biogenesis","type":"related"},{"name":"cortical actin cytoskeleton stabilization","type":"exact"},{"name":"cortical resistance","type":"related"}],"termid":"GO:0030866","terms_by_termid":{"GO:0000147":null,"GO:0000915":null,"GO:0030866":null,"GO:0044396":null,"GO:0044837":null,"GO:0071520":null,"GO:0120306":null,"GO:1902404":null,"GO:1903475":null,"GO:1903479":null,"GO:1903499":null,"GO:1903500":null,"GO:1903501":null}}


id: PBO:0055117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2536","termid":"PBO:0055117"}


id: MOD:01968
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-cysteine residue and an L-threonine residue by a thioether bond to form (2R,3R,2'R)-3-methyllanthionine.","definition_xrefs":["PubMed:23314913","RESID:AA0610"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3-methyllanthionine","termid":"MOD:01981"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(2R,3R,2'R)-3-methyllanthionine","synonyms":[{"name":"(2R,3R)-2-amino-3-([(2R)-2-amino-2-carboxyethyl]sulfanyl)butanoic acid","type":"exact"},{"name":"(2R,3R,2'R)-2-amino-3-[(2-amino-2-carboxyethyl)thio]butanoic acid","type":"exact"},{"name":"(2R,3R,2'R)-3-methyllanthionine","type":"exact"},{"name":"(2R,3R,6R)-2,6-diamino-3-methyl-4-thiaheptanedioic acid","type":"exact"},{"name":"(2R,3R,6R)-3-methyllanthionine","type":"exact"},{"name":"2-azanyl-3-[(2-azanyl-2-carboxyethyl)sulfanyl]butanoic acid","type":"exact"},{"name":"3-methyl-L,L-lanthionine","type":"exact"},{"name":"cysteine-3-L-butyrine thioether","type":"exact"}],"termid":"MOD:01968"}


id: PBO:0076956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TGFB3 antisense RNA 1","termid":"PBO:0076956"}


id: PBO:0079424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta class I pseudogene 7","termid":"PBO:0079424"}


id: GO:0070109
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of an interleukin-27-mediated signaling pathway.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine-mediated signaling pathway","termid":"GO:0001961"},{"relation_name":"is_a","term_name":"regulation of interleukin-27-mediated signaling pathway","termid":"GO:0070107"},{"relation_name":"positively_regulates","term_name":"interleukin-27-mediated signaling pathway","termid":"GO:0070106"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of interleukin-27-mediated signaling pathway","synonyms":[{"name":"positive regulation of IL-27-mediated signaling pathway","type":"exact"},{"name":"positive regulation of IL27RA/IL6ST signaling pathway","type":"exact"},{"name":"positive regulation of interleukin-27-mediated signalling pathway","type":"exact"}],"termid":"GO:0070109"}


id: MOD:01430
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that forms an adduct with a (13)C labeled compound used as a reagent.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope tagged reagent derivatized residue","termid":"MOD:01426"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(18)O isotope tagged reagent","termid":"MOD:01430"}


id: PBO:0015654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence orphan, predicted cell surface protein","termid":"PBO:0015654"}


id: PBO:0079903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquinol-cytochrome c reductase binding protein pseudogene 1","termid":"PBO:0079903"}


id: GO:0004579
data:
  {"annotated_genes":["SJAG_03333","SJAG_04090","SJAG_04127","SJAG_05348"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96108,97431,98650,113360],"is_not":false,"summary":null,"term":"GO:0004579"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: dolichyl diphosphooligosaccharide + protein L-asparagine = dolichyl diphosphate + a glycoprotein with the oligosaccharide chain attached by glycosylamine linkage to protein L-asparagine.","definition_xrefs":["RHEA:22980"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharyl transferase activity","termid":"GO:0004576"}],"gene_count":4,"genes_by_uniquename":{"SJAG_03333":null,"SJAG_04090":null,"SJAG_04127":null,"SJAG_05348":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016757","GO:0003824"],"is_obsolete":false,"name":"dolichyl-diphosphooligosaccharide-protein glycotransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9694793","Reactome:R-HSA-446209","MetaCyc:RXN-16761","EC:2.4.99.18"],"synonyms":[{"name":"asparagine N-glycosyltransferase activity","type":"exact"},{"name":"dolichyl-diphosphooligosaccharide-protein glycosyltransferase activity","type":"exact"},{"name":"dolichyl-diphosphooligosaccharide:protein-L-asparagine oligopolysaccharidotransferase activity","type":"exact"},{"name":"dolichyldiphosphooligosaccharide-protein glycosyltransferase activity","type":"exact"},{"name":"dolichyldiphosphooligosaccharide-protein oligosaccharyltransferase activity","type":"exact"},{"name":"dolichyldiphosphoryloligosaccharide-protein oligosaccharyltransferase activity","type":"exact"},{"name":"dolichylpyrophosphodiacetylchitobiose-protein glycosyltransferase activity","type":"exact"},{"name":"oligomannosyltransferase activity","type":"related"}],"termid":"GO:0004579","terms_by_termid":{"GO:0004579":null}}


id: PBO:0002578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease H70 (predicted)","termid":"PBO:0002578"}


id: GO:1902571
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of serine-type peptidase activity.","definition_xrefs":["GOC:TermGenie","GOC:krc","PMID:20179351"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of peptidase activity","termid":"GO:0052547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of serine-type peptidase activity","synonyms":[{"name":"regulation of serine protease activity","type":"narrow"}],"termid":"GO:1902571"}


id: GO:0008713
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: heptosyl-KDO2-lipid A + ADP-L-glycero-beta-D-manno-heptose = heptosyl2-KDO2-lipid A + ADP + H+.","definition_xrefs":["MetaCyc:RXN0-5061"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipopolysaccharide heptosyltransferase activity","termid":"GO:0008920"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016757"],"is_obsolete":false,"name":"ADP-heptose-lipopolysaccharide heptosyltransferase activity","secondary_identifiers":["RHEA:28538"],"synonyms":[{"name":"ADP-heptose:LPS heptosyltransferase activity","type":"exact"}],"termid":"GO:0008713"}


id: PBO:0029015
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_centromeric_outer_repeat_transcript-derived_siRNA_level","termid":"PBO:0029015"}


id: SO:0001074
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Polypeptide region that is localized outside of a lipid bilayer and outside of the cytoplasm.","definition_xrefs":["SO:cb","EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extramembrane_polypeptide_region","termid":"SO:0001072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"non_cytoplasmic_polypeptide_region","secondary_identifiers":["BS:00144"],"synonyms":[{"name":"non cytoplasmic polypeptide region","type":"exact"},{"name":"non_cytoplasm_location","type":"exact"},{"name":"outside","type":"related"}],"termid":"SO:0001074"}


id: SO:0000040
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A clone of a DNA region of a genome.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"genomic_DNA","termid":"SO:0000991"},{"relation_name":"is_a","term_name":"clone","termid":"SO:0000151"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"genomic_clone","synonyms":[{"name":"genomic clone","type":"exact"}],"termid":"SO:0000040"}


id: GO:1902104
data:
  {"annotated_genes":["SJAG_00145"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91262],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905191"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of metaphase/anaphase transition of meiotic cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of meiotic cell cycle phase transition","termid":"GO:1901995"},{"relation_name":"is_a","term_name":"positive regulation of metaphase/anaphase transition of cell cycle","termid":"GO:1902101"},{"relation_name":"is_a","term_name":"regulation of metaphase/anaphase transition of meiotic cell cycle","termid":"GO:1902102"},{"relation_name":"is_a","term_name":"positive regulation of meiotic chromosome separation","termid":"GO:1905134"},{"relation_name":"positively_regulates","term_name":"metaphase/anaphase transition of meiotic cell cycle","termid":"GO:0044785"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00145":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"positive regulation of metaphase/anaphase transition of meiotic cell cycle","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of meiotic metaphase/anaphase transition","type":"exact"},{"name":"activation of metaphase/anaphase transition of meiotic cell cycle","type":"narrow"},{"name":"positive regulation of meiotic metaphase/anaphase transition","type":"exact"},{"name":"up regulation of meiotic metaphase/anaphase transition","type":"exact"},{"name":"up regulation of metaphase/anaphase transition of meiotic cell cycle","type":"exact"},{"name":"up-regulation of meiotic metaphase/anaphase transition","type":"exact"},{"name":"up-regulation of metaphase/anaphase transition of meiotic cell cycle","type":"exact"},{"name":"upregulation of meiotic metaphase/anaphase transition","type":"exact"},{"name":"upregulation of metaphase/anaphase transition of meiotic cell cycle","type":"exact"}],"termid":"GO:1902104","terms_by_termid":{"GO:1905191":null}}


id: PBO:0002784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF1716 family protein","termid":"PBO:0002784"}


id: PBO:0085500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein arginine N-methyltransferase; exhibits septin and Hsl1p-dependent localization to the bud neck in budded cells and periodic Hsl1p-dependent phosphorylation; required with Hsl1p, and Elm1p for the mother-bud neck recruitment, phosphorylation, and degradation of Swe1p; responsible for symmetric dimethylation of histone H4 on Arg3; relocalizes away from bud neck upon DNA replication stress; human homolog PRMT5 can complement yeast hsl7 mutant","termid":"PBO:0085500"}


id: PBO:0057401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548h-3","termid":"PBO:0057401"}


id: PBO:0050317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 19","termid":"PBO:0050317"}


id: PBO:0055533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2968","termid":"PBO:0055533"}


id: GO:0003838
data:
  {"annotated_genes":["SJAG_03531"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100350],"is_not":false,"summary":null,"term":"GO:0003838"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + zymosterol = fecosterol + H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:21128"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C-methyltransferase activity","termid":"GO:0008169"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03531":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016741"],"is_obsolete":false,"name":"sterol 24-C-methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0102101","MetaCyc:RXN3O-178","EC:2.1.1.41"],"synonyms":[{"name":"24-sterol C-methyltransferase activity","type":"related"},{"name":"S-adenosyl-4-methionine:sterol Delta(24)-methyltransferase activity","type":"related"},{"name":"S-adenosyl-4-methionine:sterol delta24-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:Delta(24(23))-sterol methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:Delta24(23)-sterol methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:zymosterol 24-C-methyltransferase activity","type":"related"},{"name":"SMT1 activity","type":"narrow"},{"name":"delta(24)-methyltransferase activity","type":"related"},{"name":"delta(24)-sterol C-methyltransferase activity","type":"exact"},{"name":"delta(24)-sterol methyltransferase activity","type":"related"},{"name":"delta24-methyltransferase activity","type":"related"},{"name":"delta24-sterol methyltransferase activity","type":"related"},{"name":"phytosterol methyltransferase activity","type":"narrow"},{"name":"sterol 24C methyltransferase activity","type":"exact"},{"name":"zymosterol-24-methyltransferase activity","type":"narrow"}],"termid":"GO:0003838","terms_by_termid":{"GO:0003838":null}}


id: PBO:0089390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Utp11","termid":"PBO:0089390"}


id: MOD:01088
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a 2,4,6-trimethyloxybenzyl group for a hydrogen atom.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2,4,6-trimethyloxybenzyl modified residue","synonyms":[{"name":"Tmob","type":"exact"}],"termid":"MOD:01088"}


id: PBO:0090363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma tubulin complex GCP2 subunit Alp4","termid":"PBO:0090363"}


id: GO:0034601
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + CoA + NAD(P)+ = succinyl-CoA + CO2 + NAD(P)H.","definition_xrefs":["EC:1.2.1.52","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"oxoglutarate dehydrogenase [NAD(P)+] activity","termid":"GO:0034601"}


id: GO:0002586
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of antigen processing and presentation of peptide antigen via MHC class II.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","termid":"GO:0002580"},{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation of peptide antigen","termid":"GO:0002583"},{"relation_name":"regulates","term_name":"antigen processing and presentation of peptide antigen via MHC class II","termid":"GO:0002495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of antigen processing and presentation of peptide antigen via MHC class II","synonyms":[{"name":"regulation of peptide antigen processing and presentation via MHC class II","type":"exact"}],"termid":"GO:0002586"}


id: PR:Q10149
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- grh1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1D4.02c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1D4.02c","synonyms":[{"name":"Spom972h-grh1","type":"exact"}],"termid":"PR:Q10149"}


id: GO:0044678
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that in Methanobacterium thermoautotrophicum is composed of six subunits, and in Methanosarcina barkeri contains is composed of either two subunits or nine subunits. Catalyzes the conversion of coenzyme B, coenzyme M, and methanophenazine to form N-{7-[(2-sulfoethyl)dithio]heptanoyl}-3-O-phospho-L-threonine and dihydromethanophenazine.","definition_xrefs":["PMID:9063468","PMID:8119281","PMID:8174566","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"CoB-CoM heterodisulfide reductase complex","synonyms":[{"name":"coenzyme M-7-mercaptoheptanoylthreonine-phosphate-heterodisulfide hydrogenase complex","type":"exact"},{"name":"hydrogen:coenzyme-M-7-mercaptoheptanoylthreonine-phosphate-heterodisulfide oxidoreductase complex","type":"exact"}],"termid":"GO:0044678"}


id: PBO:0090941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium/calcium exchanger","termid":"PBO:0090941"}


id: GO:0033799
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + myricetin = S-adenosyl-L-homocysteine + laricitrin.","definition_xrefs":["RHEA:25629"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-methyltransferase activity","termid":"GO:0008171"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016741","GO:0003824"],"is_obsolete":false,"name":"myricetin 3'-O-methyltransferase activity","secondary_identifiers":["EC:2.1.1.267","KEGG_REACTION:R06815","GO:0102437","MetaCyc:RXN-13912","MetaCyc:RXN-8451"],"synonyms":[{"name":"CrCOMT2","type":"related"},{"name":"S-adenosyl-L-methionine:myricetin O-methyltransferase activity","type":"related"},{"name":"flavonoid 3',5'-O-dimethyltransferase activity","type":"related"},{"name":"myricetin 3-O-methyltransferase activity","type":"related"}],"termid":"GO:0033799"}


id: PBO:0085665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in nuclear export of the large ribosomal subunit; acts as a Crm1p-dependent adapter protein for export of nascent ribosomal subunits through the nuclear pore complex","termid":"PBO:0085665"}


id: PBO:0018269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial processing peptidase (MPP) complex beta subunit Mas1 (predicted)","termid":"PBO:0018269"}


id: PBO:0087858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional activator involved in adaptation to weak acid stress; activates transcription of TPO2, YRO2, and other genes encoding membrane stress proteins; HAA1 has a paralog, CUP2, that arose from the whole genome duplication; relocalizes from cytoplasm to nucleus upon DNA replication stress","termid":"PBO:0087858"}


id: PBO:0084400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lunapark family member involved in ER network formation; regulates the ER asymmetry-induced inheritance block during ER stress; localizes to ER junctions and this localization is regulated by the yeast atlastin ortholog Sey1p; required for reticulophagy where it is proposed to stabilize the actin-dependent remodeling of the ER; interacts with the reticulon protein Rtn1p; induced in response to the DNA-damaging agent MMS","termid":"PBO:0084400"}


id: PBO:0078186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 3-1","termid":"PBO:0078186"}


id: GO:1990208
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of the RNA levels in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:12182338","PMID:18703740"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by symbiont of RNA levels in host (obsolete GO:1990208)","termid":"GO:1990208"}


id: GO:0004704
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the phosphorylation of the alpha or beta subunit of the inhibitor of kappaB kinase complex (IKK).","definition_xrefs":["PMID:20685151"],"gene_count":0,"genotype_count":0,"name":"obsolete NF-kappaB-inducing kinase activity (obsolete GO:0004704)","synonyms":[{"name":"NIK","type":"exact"}],"termid":"GO:0004704"}


id: GO:0075345
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The covalent alteration by an organism of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modification by symbiont of host protein (obsolete GO:0075345)","termid":"GO:0075345"}


id: GO:0098697
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Any ryanodine-sensitive calcium-release channel activity that is involved in regulation of postsynaptic cytosolic calcium ion concentration.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ryanodine-sensitive calcium-release channel activity","termid":"GO:0005219"},{"relation_name":"is_a","term_name":"calcium-induced calcium release activity involved in regulation of postsynaptic cytosolic calcium ion concentration","termid":"GO:1905058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"ryanodine-sensitive calcium-release channel activity involved in regulation of postsynaptic cytosolic calcium levels","termid":"GO:0098697"}


id: GO:0070577
data:
  {"annotated_genes":["SJAG_00591","SJAG_02701","SJAG_00837","SJAG_02500","SJAG_02625","SJAG_05252"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70038,74182,75940,77505,77835,78943],"is_not":false,"summary":null,"term":"GO:0070577"}]},"cv_name":"molecular_function","definition":"Binding to a histone in which a lysine residue has been modified by acetylation.","definition_xrefs":["GOC:BHF","GOC:mah","GOC:rl","PMID:17582821"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone binding","termid":"GO:0042393"},{"relation_name":"is_a","term_name":"acetylation-dependent protein binding","termid":"GO:0140033"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00591":null,"SJAG_00837":null,"SJAG_02500":null,"SJAG_02625":null,"SJAG_02701":null,"SJAG_05252":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"lysine-acetylated histone binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"acetylated histone residue binding","type":"broad"}],"termid":"GO:0070577","terms_by_termid":{"GO:0070577":null}}


id: GO:0034006
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = amorpha-4,11-diene + diphosphate.","definition_xrefs":["RHEA:18325","EC:4.2.3.24"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpene synthase activity","termid":"GO:0010334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"amorpha-4,11-diene synthase activity","secondary_identifiers":["KEGG_REACTION:R07630","MetaCyc:RXN-8046"],"synonyms":[{"name":"2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase (amorpha-4,11-diene-forming) activity","type":"related"},{"name":"amorphadiene synthase activity","type":"related"}],"termid":"GO:0034006"}


id: PBO:0083298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps 3' end of essential PRP21 gene encoding a subunit of the SF3a splicing factor complex","termid":"PBO:0083298"}


id: MOD:01948
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-cysteine residue and two L-serine residues by a thioether bond and a carbon-carbon bond to form labionin.","definition_xrefs":["PubMed:20082397","RESID:AA0594"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-carbon thioether crosslinked residues","termid":"MOD:01993"},{"relation_name":"is_a","term_name":"crosslinked L-serine residue","termid":"MOD:02055"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"labionin","synonyms":[{"name":"(2S,4S)-2,4-diamino-2-[([(2R)-2-amino-2-carboxyethyl]sulfanyl)methyl]pentanedioic acid","type":"exact"},{"name":"(2S,4S,8R)-2,4,8-triamino-4-carboxy-6-thianonanedioic acid","type":"exact"},{"name":"(2S,4S,8R)-labionin","type":"exact"},{"name":"labionin","type":"exact"}],"termid":"MOD:01948"}


id: PBO:0091277
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements E. coli pyrB","termid":"PBO:0091277"}


id: PBO:0030735
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_cell_division_prior_to_G0_entry","termid":"PBO:0030735"}


id: PBO:0027008
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-irregular_ascospore_wall","termid":"PBO:0027008"}


id: PBO:0056085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphocyte antigen 86","termid":"PBO:0056085"}


id: GO:0031433
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to telethonin, a protein found in the Z disc of striated muscle and which is a substrate of the titin kinase.","definition_xrefs":["PMID:10481174","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeletal protein binding","termid":"GO:0008092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0008092","GO:0005515"],"is_obsolete":false,"name":"telethonin binding","termid":"GO:0031433"}


id: PBO:0081723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF652 antisense RNA 1","termid":"PBO:0081723"}


id: PBO:0034127
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-aligned_with","termid":"PBO:0034127"}


id: GO:0036415
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the propensity of transfer RNA (tRNA) molecules to degradation. Includes processes that both stabilize and destabilize tRNAs.","definition_xrefs":["PMID:21502523","PMID:23572593","GOC:aa"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of RNA stability","termid":"GO:0043487"},{"relation_name":"is_a","term_name":"regulation of tRNA catabolic process","termid":"GO:1902370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006399"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0006399","GO:0010467"],"is_obsolete":false,"name":"regulation of tRNA stability","termid":"GO:0036415"}


id: PBO:0110289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage and polyadenylation specificity factor complex RNA-binding protein Rna15","termid":"PBO:0110289"}


id: GO:1900816
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ochratoxin A.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular modified amino acid metabolic process","termid":"GO:0006575"},{"relation_name":"is_a","term_name":"secondary metabolic process","termid":"GO:0019748"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0019748"],"is_obsolete":false,"name":"ochratoxin A metabolic process","synonyms":[{"name":"Ochratoxin A metabolism","type":"exact"}],"termid":"GO:1900816"}


id: GO:0047957
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: formononetin + NADPH + O2 = 2'-hydroxyformononetin + NADP+ + H2O.","definition_xrefs":["EC:1.14.14.89","MetaCyc:ISOFLAVONE-2-HYDROXYLASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"4'-methoxyisoflavone 2'-hydroxylase activity","secondary_identifiers":["RHEA:12388"],"synonyms":[{"name":"formononetin,NADPH:oxygen oxidoreductase (2'-hydroxylating)","type":"related"},{"name":"isoflavone 2'-monooxygenase activity","type":"broad"}],"termid":"GO:0047957"}


id: PBO:0000316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tuberin","termid":"PBO:0000316"}


id: PBO:0077824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TP53 target 3C","termid":"PBO:0077824"}


id: PBO:0091027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HOPS complex Rab GEF subunit Vam6","termid":"PBO:0091027"}


id: FYPO:0007394
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the structure of one or more RNA molecules differs from normal.","definition_xrefs":["PomBase:mah","PMID:24793650"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985"],"is_obsolete":false,"name":"abnormal RNA structure","synonyms":[{"name":"abnormal RNA secondary structure","type":"narrow"}],"termid":"FYPO:0007394"}


id: GO:0102435
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: myricetin(1-) + S-adenosyl-L-methionine = 7-O-methylmyricetin + S-adenosyl-L-homocysteine.","definition_xrefs":["GOC:pz","EC:2.1.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016741"],"is_obsolete":false,"name":"myricetin 7-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-13910"],"termid":"GO:0102435"}


id: PBO:0046989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 87 member A","termid":"PBO:0046989"}


id: PBO:0053154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lactate dehydrogenase B pseudogene 3","termid":"PBO:0053154"}


id: GO:2000064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cortisol biosynthetic process.","definition_xrefs":["GOC:yaf","GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ketone biosynthetic process","termid":"GO:0010566"},{"relation_name":"is_a","term_name":"regulation of glucocorticoid biosynthetic process","termid":"GO:0031946"},{"relation_name":"is_a","term_name":"regulation of alcohol biosynthetic process","termid":"GO:1902930"},{"relation_name":"regulates","term_name":"cortisol biosynthetic process","termid":"GO:0034651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"regulation of cortisol biosynthetic process","synonyms":[{"name":"regulation of cortisol anabolism","type":"related"},{"name":"regulation of cortisol biosynthesis","type":"exact"},{"name":"regulation of cortisol formation","type":"exact"},{"name":"regulation of cortisol synthesis","type":"exact"}],"termid":"GO:2000064"}


id: GO:0010329
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of auxin, from one side of a membrane to the other, out of a cell.","definition_xrefs":["PMID:16839804"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxin transmembrane transporter activity","termid":"GO:0080161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"auxin efflux transmembrane transporter activity","synonyms":[{"name":"auxin efflux carrier","type":"related"},{"name":"auxin efflux facilitator","type":"related"}],"termid":"GO:0010329"}


id: GO:0141119
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that maintains methylated cytosine in newly synthesized DNA following DNA replication. After the establishment of novel DNA methylation marks, the newly created patterns must be faithfully transmitted by maintenance DNA methyltransferases during cell division.","definition_xrefs":["PMID:20142834","PMID:11005794","PMID:34968368","PMID:26077819"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromatin organization","termid":"GO:0006325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006325"}],"interesting_parent_ids":["GO:0008150","GO:0006325"],"is_obsolete":false,"name":"chromosomal DNA methylation maintenance following DNA replication","synonyms":[{"name":"DNA methylation","type":"broad"},{"name":"DNA methylation maintenance","type":"broad"},{"name":"DNA methylation maintenance following DNA replication","type":"exact"},{"name":"DNA methylation maintenance following cell division","type":"exact"},{"name":"genome methylation maintenance following DNA replication","type":"exact"}],"termid":"GO:0141119"}


id: FYPO:0003881
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of mitochondrial DNA measured in a cell is too low to detect.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"substance absent from cell during vegetative growth","termid":"FYPO:0001208"},{"relation_name":"is_a","term_name":"decreased cellular mtDNA level","termid":"FYPO:0003769"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"mtDNA absent from cell","synonyms":[{"name":"absent mtDNA","type":"exact"},{"name":"mitochondrial DNA absent from cell","type":"exact"},{"name":"mtDNA absent from cell during mitotic cell cycle","type":"related"},{"name":"mtDNA absent from cell during vegetative growth","type":"exact"}],"termid":"FYPO:0003881"}


id: RO:0002120
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":" Relation between a neuron and an anatomical structure (including cells) that it chemically synapses to.\\n        ","direct_ancestors":[{"relation_name":"is_a","term_name":"downstream_in_neural_circuit_with","termid":"RO:0000302"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synapsed_to","termid":"RO:0002120"}


id: PBO:0081859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 791","termid":"PBO:0081859"}


id: GO:1905591
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of optical nerve axon regeneration.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:16699509"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of axon regeneration","termid":"GO:0048679"},{"relation_name":"regulates","term_name":"optical nerve axon regeneration","termid":"GO:0101027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of optical nerve axon regeneration","termid":"GO:1905591"}


id: PBO:0040306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+/K+ transporting subunit alpha","termid":"PBO:0040306"}


id: PBO:0055682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lipase family member K","termid":"PBO:0055682"}


id: GO:0102313
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: geranyl diphosphate(3-) + H2O = 1,8-cineole + diphosphoric acid.","definition_xrefs":["GOC:pz","RHEA:32543"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"1,8-cineole synthase activity","secondary_identifiers":["EC:4.2.3.108","MetaCyc:RXN-12980"],"termid":"GO:0102313"}


id: GO:0046601
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of centriole replication.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of centriole replication","termid":"GO:0046599"},{"relation_name":"is_a","term_name":"positive regulation of cytoskeleton organization","termid":"GO:0051495"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle process","termid":"GO:0090068"},{"relation_name":"is_a","term_name":"positive regulation of organelle assembly","termid":"GO:1902117"},{"relation_name":"positively_regulates","term_name":"centriole replication","termid":"GO:0007099"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0007049","GO:0007010"],"is_obsolete":false,"name":"positive regulation of centriole replication","synonyms":[{"name":"activation of centriole replication","type":"narrow"},{"name":"stimulation of centriole replication","type":"narrow"},{"name":"up regulation of centriole replication","type":"exact"},{"name":"up-regulation of centriole replication","type":"exact"},{"name":"upregulation of centriole replication","type":"exact"}],"termid":"GO:0046601"}


id: GO:0051711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the killing by an organism of cells in another organism.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell killing","termid":"GO:0031342"},{"relation_name":"is_a","term_name":"regulation of killing of cells of another organism","termid":"GO:0051709"},{"relation_name":"negatively_regulates","term_name":"killing of cells of another organism","termid":"GO:0031640"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of killing of cells of another organism","secondary_identifiers":["GO:0052490"],"synonyms":[{"name":"down regulation of killing of cells of another organism","type":"exact"},{"name":"down-regulation of killing of cells of another organism","type":"exact"},{"name":"downregulation of killing of cells of another organism","type":"exact"},{"name":"inhibition of killing of cells of another organism","type":"narrow"},{"name":"negative regulation of killing of cells of other organism","type":"exact"}],"termid":"GO:0051711"}


id: PBO:0018218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heme import protein Shu1","termid":"PBO:0018218"}


id: GO:0090343
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the rate, frequency, or extent of cell aging. Cell aging is the progression of the cell from its inception to the end of its lifespan.","definition_xrefs":["GOC:dph","GOC:tb","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cell aging (obsolete GO:0090343)","termid":"GO:0090343"}


id: PBO:0073939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 18 member A2","termid":"PBO:0073939"}


id: PBO:0052234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium channel tetramerization domain containing 9 pseudogene 2","termid":"PBO:0052234"}


id: PBO:0075850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSX family member 2","termid":"PBO:0075850"}


id: GO:0010263
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of tricyclic triterpenoid compounds, terpenoids with 6 isoprene units and 3 carbon rings.","definition_xrefs":["GOC:ct"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tricyclic triterpenoid metabolic process","termid":"GO:0010683"},{"relation_name":"is_a","term_name":"triterpenoid biosynthetic process","termid":"GO:0016104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"tricyclic triterpenoid biosynthetic process","synonyms":[{"name":"tricyclic triterpenoid anabolism","type":"exact"},{"name":"tricyclic triterpenoid biosynthesis","type":"exact"},{"name":"tricyclic triterpenoid formation","type":"exact"},{"name":"tricyclic triterpenoid synthesis","type":"exact"}],"termid":"GO:0010263"}


id: GO:0015776
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of capsular polysaccharides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Capsular polysaccharides make up the capsule, a protective structure surrounding some species of bacteria and fungi.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide transport","termid":"GO:0015774"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"capsular polysaccharide transport","synonyms":[{"name":"capsular-polysaccharide transport","type":"exact"},{"name":"capsule polysaccharide transport","type":"exact"}],"termid":"GO:0015776"}


id: GO:0010563
data:
  {"annotated_genes":["SJAG_01187","SJAG_02380","SJAG_05314","SJAG_00685","SJAG_01906","SJAG_03940"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71987,75022],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045820"},{"annotations":[111537,107436],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001211"},{"annotations":[105803,108811],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071072"}]},"cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular metabolic process","termid":"GO:0031324"},{"relation_name":"is_a","term_name":"regulation of phosphorus metabolic process","termid":"GO:0051174"},{"relation_name":"negatively_regulates","term_name":"phosphorus metabolic process","termid":"GO:0006793"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00685":null,"SJAG_01187":null,"SJAG_01906":null,"SJAG_02380":null,"SJAG_03940":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of phosphorus metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0010563","terms_by_termid":{"GO:0045820":null,"GO:0071072":null,"GO:2001211":null}}


id: GO:0031991
data:
  {"annotated_genes":["SJAG_00845","SJAG_02645","SJAG_04597","SJAG_03581","SJAG_03936","SJAG_04776","SJAG_03631"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77023],"is_not":false,"summary":null,"term":"GO:0031991"},{"annotations":[99785],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903472"},{"annotations":[83686,90515,106594,109433,90683],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903473"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of contraction of the actomyosin ring involved in cytokinesis that takes place as part of a cell cycle.","definition_xrefs":["GOC:dph","GOC:mah","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokinetic process","termid":"GO:0032506"},{"relation_name":"is_a","term_name":"regulation of cytokinetic process","termid":"GO:0032954"},{"relation_name":"regulates","term_name":"actomyosin contractile ring contraction","termid":"GO:0000916"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00845":null,"SJAG_02645":null,"SJAG_03581":null,"SJAG_03631":null,"SJAG_03936":null,"SJAG_04597":null,"SJAG_04776":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"regulation of actomyosin contractile ring contraction","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"regulation of actomyosin contractile ring constriction","type":"exact"},{"name":"regulation of contractile ring contraction involved in cell cycle cytokinesis","type":"exact"},{"name":"regulation of contractile ring contraction involved in cytokinesis during cell cycle","type":"related"}],"termid":"GO:0031991","terms_by_termid":{"GO:0031991":null,"GO:1903472":null,"GO:1903473":null}}


id: PBO:0051442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable 3-27","termid":"PBO:0051442"}


id: GO:0097608
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A motile cilium found in dinoflagellates. It coils around the cell and provides the forward thrust for motility. It is often contained in a furrow called the cingulum, and emerges from a flagellar pore located in the cingulum.","definition_xrefs":["ISBN:0632009152","Wikipedia:Dinoflagellate#Morphology","GOC:at"],"direct_ancestors":[{"relation_name":"is_a","term_name":"9+2 motile cilium","termid":"GO:0097729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"transverse flagellum","synonyms":[{"name":"transverse cilium","type":"exact"}],"termid":"GO:0097608"}


id: PBO:0028293
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-syntelic_kinetochore_attachment_during_mitosis","termid":"PBO:0028293"}


id: GO:0097648
data:
  {"annotated_genes":["SJAG_01978"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[84291],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0038038"}]},"cv_name":"cellular_component","definition":"A protein complex that contains G protein-coupled receptors.","definition_xrefs":["GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01978":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"G protein-coupled receptor complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"G-protein coupled receptor complex","type":"exact"}],"termid":"GO:0097648","terms_by_termid":{"GO:0038038":null}}


id: GO:1905942
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of formation of growth cone in injured axon.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:19737525"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sprouting of injured axon","termid":"GO:0048686"},{"relation_name":"regulates","term_name":"formation of growth cone in injured axon","termid":"GO:0048689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of formation of growth cone in injured axon","termid":"GO:1905942"}


id: GO:0102721
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: O2 + 2 an ubiquinol = 2 H2O + 2 an ubiquinone.","definition_xrefs":["RHEA:30255","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor","termid":"GO:0016682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"ubiquinol:oxygen oxidoreductase activity","secondary_identifiers":["EC:1.10.3.11","MetaCyc:RXN-6883"],"termid":"GO:0102721"}


id: GO:0008240
data:
  {"annotated_genes":["SJAG_04928"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97373],"is_not":false,"summary":null,"term":"GO:0008240"}]},"cv_name":"molecular_function","definition":"Catalysis of the release of an N-terminal tripeptide from a polypeptide.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine-type exopeptidase activity","termid":"GO:0070008"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04928":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0008233","GO:0003824","GO:0016787","GO:0140096"],"is_obsolete":false,"name":"tripeptidyl-peptidase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:3.4.14.9-RXN","EC:3.4.14.9","EC:3.4.14.10","MetaCyc:3.4.14.10-RXN"],"termid":"GO:0008240","terms_by_termid":{"GO:0008240":null}}


id: GO:0018778
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: trichloroacetate + 2 H2O = 3 H+ + 3 Cl- + oxalate.","definition_xrefs":["UM-BBD_reactionID:r0382"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid halide bonds, in C-halide compounds","termid":"GO:0019120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"DL-2 haloacid dehalogenase activity","secondary_identifiers":["EC:3.8.1.10","MetaCyc:RXN-9150"],"termid":"GO:0018778"}


id: FYPO:0006785
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing cobalt ions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0002060","FYPO:0000003","FYPO:0002058","FYPO:0000139","FYPO:0002057"],"is_obsolete":false,"name":"normal growth on cobalt","synonyms":[{"name":"normal cell population growth in presence of cobalt","type":"exact"},{"name":"normal cell population growth on cobalt","type":"exact"},{"name":"normal cell population growth on cobalt ion","type":"exact"},{"name":"normal cellular response to cobalt","type":"related"},{"name":"normal growth on cobalt ions","type":"exact"},{"name":"normal vegetative cell population growth on cobalt","type":"exact"}],"termid":"FYPO:0006785"}


id: PBO:0076949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TGFA intronic transcript 1","termid":"PBO:0076949"}


id: GO:0010658
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a striated muscle cell and result in its death. Striated muscle cells make up striated muscle fibers which are divided by transverse bands into striations.","definition_xrefs":["GOC:mtg_apoptosis","CL:0000737","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscle cell apoptotic process","termid":"GO:0010657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"striated muscle cell apoptotic process","synonyms":[{"name":"striated muscle cell apoptosis","type":"narrow"}],"termid":"GO:0010658"}


id: GO:0042820
data:
  {"annotated_genes":["SJAG_01543"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96952],"is_not":false,"summary":null,"term":"GO:0042820"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.","definition_xrefs":["PMID:30671974","GOC:jl","PMID:30037155"],"direct_ancestors":[{"relation_name":"is_a","term_name":"water-soluble vitamin catabolic process","termid":"GO:0042365"},{"relation_name":"is_a","term_name":"vitamin B6 metabolic process","termid":"GO:0042816"},{"relation_name":"is_a","term_name":"pyridine-containing compound catabolic process","termid":"GO:0072526"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01543":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006766"}],"interesting_parent_ids":["GO:0006766","GO:0044248","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"vitamin B6 catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"vitamin B6 breakdown","type":"exact"},{"name":"vitamin B6 catabolism","type":"exact"},{"name":"vitamin B6 degradation","type":"exact"}],"termid":"GO:0042820","terms_by_termid":{"GO:0042820":null}}


id: PBO:0111350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophismin-like histone chaperone/CENP-A amino terminus domain (NTD) isomerase Ani1/Fkbp39","termid":"PBO:0111350"}


id: PBO:0065325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 48","termid":"PBO:0065325"}


id: GO:0010529
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that decreases the frequency, rate or extent of transposition. Transposition results in the movement of discrete segments of DNA between nonhomologous sites.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transposition (obsolete GO:0010529)","termid":"GO:0010529"}


id: PATO:0001899
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A circumference which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"circumference","termid":"PATO:0001648"},{"relation_name":"is_a","term_name":"decreased perimeter","termid":"PATO:0001713"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased circumference","termid":"PATO:0001899"}


id: PBO:0047016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A19","termid":"PBO:0047016"}


id: PBO:0108577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tudor domain and nuclease, Snd1","termid":"PBO:0108577"}


id: GO:0050093
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: methanol + NAD+ = formaldehyde + H+ + NADH.","definition_xrefs":["RHEA:19401","EC:1.1.1.244"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol dehydrogenase (NAD+) activity","termid":"GO:0004022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"methanol dehydrogenase (NAD+) activity","secondary_identifiers":["KEGG_REACTION:R00605","MetaCyc:METHANOL-DEHYDROGENASE-RXN"],"synonyms":[{"name":"methanol dehydrogenase activity","type":"broad"},{"name":"methanol:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0050093"}


id: PBO:0001828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetraspan protein Dni1","termid":"PBO:0001828"}


id: GO:0008444
data:
  {"annotated_genes":["SJAG_00168"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[109091],"is_not":false,"summary":null,"term":"GO:0008444"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: sn-glycerol 3-phosphate + CDP-diacylglycerol = 3-(3-sn-phosphatidyl)-sn-glycerol 1-phosphate + CMP + H+.","definition_xrefs":["EC:2.7.8.5","RHEA:12593"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CDP-alcohol phosphatidyltransferase activity","termid":"GO:0017169"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00168":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0016780","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PHOSPHAGLYPSYN-RXN","KEGG_REACTION:R01801","Reactome:R-HSA-1482939"],"synonyms":[{"name":"3-phosphatidyl-1'-glycerol-3'-phosphate synthase activity","type":"related"},{"name":"CDP-diacylglycerol:sn-glycerol-3-phosphate 3-phosphatidyltransferase activity","type":"related"},{"name":"CDPdiacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity","type":"related"},{"name":"CDPdiacylglycerol-sn-glycerol-3-phosphate 3-phosphatidyltransferase activity","type":"related"},{"name":"CDPdiacylglycerol:glycerol-3-phosphate phosphatidyltransferase activity","type":"related"},{"name":"CDPdiacylglycerol:sn-glycero-3-phosphate phosphatidyltransferase activity","type":"related"},{"name":"PGP synthase activity","type":"related"},{"name":"cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):sn-glycerol-3-phosphate phosphatidyltransferase activity","type":"related"},{"name":"glycerol 3-phosphate phosphatidyltransferase activity","type":"related"},{"name":"glycerol phosphate phosphatidyltransferase activity","type":"related"},{"name":"glycerophosphate phosphatidyltransferase activity","type":"related"},{"name":"phosphatidylglycerol phosphate synthase activity","type":"related"},{"name":"phosphatidylglycerol phosphate synthetase activity","type":"related"},{"name":"phosphatidylglycerolphosphate synthase activity","type":"related"},{"name":"phosphatidylglycerophosphate synthase activity","type":"related"},{"name":"phosphatidylglycerophosphate synthetase activity","type":"related"},{"name":"sn-glycerol-3-phosphate phosphatidyltransferase activity","type":"related"}],"termid":"GO:0008444","terms_by_termid":{"GO:0008444":null}}


id: PBO:0111883
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PMT2 subfamily","termid":"PBO:0111883"}


id: PBO:0043000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chitinase 3 like 1","termid":"PBO:0043000"}


id: FYPO:0007951
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A biological process phenotype in which the observed mating efficiency, as determined by counting zygotes, asci, and sometimes spores, is higher than normal when a cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:val"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased mating efficiency","termid":"FYPO:0001043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"increased mating effciency during nitrogen starvation","termid":"FYPO:0007951"}


id: FYPO:0002179
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which a microcolony forms, all cells in the population are inviable and have abnormal morphology (i.e. size, shape, or structure), some cells may divide, and some cells are longer than normal.","definition_xrefs":["PomBase:mah","PomBase:jh"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable mixed population, vegetative cells with abnormal morphology, including long cells (obsolete FYPO:0002179)","synonyms":[{"name":"inviable microcolony of vegetative cells with abnormal morphology, including long cells","type":"exact"}],"termid":"FYPO:0002179"}


id: GO:0034888
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: endosulfan + O2 + 2 H+ + 2 e- = endosulfan sulfate + H2O.","definition_xrefs":["UM-BBD_reactionID:r1382"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"endosulfan monooxygenase I activity","termid":"GO:0034888"}


id: PBO:0078330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (anticodon CTC) 1-2","termid":"PBO:0078330"}


id: PBO:0034292
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-is_eaten_by","termid":"PBO:0034292"}


id: FYPO:0003860
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of miconazole than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002682"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0002682","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"resistance to miconazole","synonyms":[{"name":"resistance to miconazole during mitotic cell cycle","type":"related"},{"name":"resistance to miconazole during vegetative growth","type":"exact"},{"name":"resistant to miconazole","type":"exact"}],"termid":"FYPO:0003860"}


id: PBO:0005188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"switch-activating protein Sap1","termid":"PBO:0005188"}


id: PBO:0084918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Molecular chaperone involved in protein folding in ER; mutation causes defects in cell wall synthesis and lysis of autophagic bodies, suppresses tor2 mutations, and is synthetically lethal with kar2-1 and with rot2 mutations; involved in N-linked glycosylation and O-mannosylation; transmembrane helix Ser250 is essential for Rot1p to interact with other membrane components and exert its functional role, avoiding exposure of Ser H-bonding group at lipid-exposed surface","termid":"PBO:0084918"}


id: GO:0097066
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thyroid hormone stimulus.","definition_xrefs":["GOC:sjw","PMID:9916872"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to hormone","termid":"GO:0009725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to thyroid hormone","synonyms":[{"name":"response to thyroid hormone stimulus","type":"exact"}],"termid":"GO:0097066"}


id: GO:1904783
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of NMDA glutamate receptor activity.","definition_xrefs":["GOC:mr","GOC:TermGenie","PMID:12857","GO_REF:0000059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of ion transmembrane transporter activity","termid":"GO:0032414"},{"relation_name":"is_a","term_name":"positive regulation of signaling receptor activity","termid":"GO:2000273"},{"relation_name":"is_a","term_name":"regulation of NMDA receptor activity","termid":"GO:2000310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0055085","GO:0023052"],"is_obsolete":false,"name":"positive regulation of NMDA glutamate receptor activity","synonyms":[{"name":"activation of N-methyl-D-aspartate selective glutamate receptor activity","type":"narrow"},{"name":"activation of NMDA glutamate receptor activity","type":"narrow"},{"name":"activation of NMDA receptor","type":"narrow"},{"name":"positive regulation of N-methyl-D-aspartate selective glutamate receptor activity","type":"exact"},{"name":"positive regulation of NMDA receptor","type":"exact"},{"name":"up regulation of N-methyl-D-aspartate selective glutamate receptor activity","type":"exact"},{"name":"up regulation of NMDA glutamate receptor activity","type":"exact"},{"name":"up regulation of NMDA receptor","type":"exact"},{"name":"up-regulation of N-methyl-D-aspartate selective glutamate receptor activity","type":"exact"},{"name":"up-regulation of NMDA glutamate receptor activity","type":"exact"},{"name":"up-regulation of NMDA receptor","type":"exact"},{"name":"upregulation of N-methyl-D-aspartate selective glutamate receptor activity","type":"exact"},{"name":"upregulation of NMDA glutamate receptor activity","type":"exact"},{"name":"upregulation of NMDA receptor","type":"exact"}],"termid":"GO:1904783"}


id: GO:1905878
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The disaggregation of an invadopodium into its constituent components.","definition_xrefs":["PMID:15684033","GOC:TermGenie","GO_REF:0000079"],"gene_count":0,"genotype_count":0,"name":"obsolete invadopodium disassembly (obsolete GO:1905878)","termid":"GO:1905878"}


id: GO:1901450
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of response to butan-1-ol.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of response to alcohol","termid":"GO:1901421"},{"relation_name":"is_a","term_name":"regulation of response to butan-1-ol","termid":"GO:1901448"},{"relation_name":"positively_regulates","term_name":"response to butan-1-ol","termid":"GO:1901422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to butan-1-ol","synonyms":[{"name":"activation of response to butan-1-ol","type":"narrow"},{"name":"up regulation of response to butan-1-ol","type":"exact"},{"name":"up-regulation of response to butan-1-ol","type":"exact"},{"name":"upregulation of response to butan-1-ol","type":"exact"}],"termid":"GO:1901450"}


id: PBO:0049483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H1.7 linker histone","termid":"PBO:0049483"}


id: PBO:0056045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LTO1 maturation factor of ABCE1","termid":"PBO:0056045"}


id: PBO:0057361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548ae-1","termid":"PBO:0057361"}


id: GO:0009881
data:
  {"annotated_genes":["SJAG_02860"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[115375],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009882"}]},"cv_name":"molecular_function","definition":"The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation.","definition_xrefs":["GOC:ai","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor activity","termid":"GO:0038023"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02860":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"photoreceptor activity","references_by_uniquename":{"PMID:23873862":null},"synonyms":[{"name":"UV-sensitive opsin","type":"narrow"},{"name":"blue-sensitive opsin","type":"narrow"},{"name":"green-sensitive opsin","type":"narrow"},{"name":"long-wave-sensitive opsin","type":"narrow"},{"name":"opsin","type":"narrow"},{"name":"red-sensitive opsin","type":"narrow"},{"name":"short-wave-sensitive opsin","type":"narrow"},{"name":"violet-sensitive opsin","type":"narrow"}],"termid":"GO:0009881","terms_by_termid":{"GO:0009882":null}}


id: GO:0000750
data:
  {"annotated_genes":["SJAG_02233","SJAG_01978","SJAG_03340","SJAG_01718","SJAG_00993","SJAG_01345","SJAG_00990","SJAG_02923"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84296,103203],"is_not":false,"summary":null,"term":"GO:0000750"},{"annotations":[89417],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0090029"},{"annotations":[92478,88288,102337,93148,85367,89418],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071507"}]},"cv_name":"biological_process","definition":"A signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion. An example of this process is found in Saccharomyces cerevisiae.","definition_xrefs":["GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal transduction involved in positive regulation of conjugation with cellular fusion","termid":"GO:0032005"},{"relation_name":"part_of","term_name":"response to pheromone triggering conjugation with cellular fusion","termid":"GO:0000749"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00990":null,"SJAG_00993":null,"SJAG_01345":null,"SJAG_01718":null,"SJAG_01978":null,"SJAG_02233":null,"SJAG_02923":null,"SJAG_03340":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0000747"},{"rel_name":"regulates","termid":"GO:0000747"}],"interesting_parent_ids":["GO:0000747","GO:0023052","GO:0008150"],"is_obsolete":false,"name":"pheromone-dependent signal transduction involved in conjugation with cellular fusion","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0030454","GO:0007330"],"synonyms":[{"name":"transduction of mating signal","type":"broad"}],"termid":"GO:0000750","terms_by_termid":{"GO:0000750":null,"GO:0071507":null,"GO:0090029":null}}


id: GO:0022886
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables transport of a solute across a membrane. This kind of transporter interacts much more weakly with the solute than the carrier does. It is an aqueous pore that extends across the membrane. It may change from closed to open and back. It transports faster than a carrier. It is always passive.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"channel activity","termid":"GO:0015267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"channel-forming ionophore activity","synonyms":[{"name":"ionophore activity","type":"broad"}],"termid":"GO:0022886"}


id: PBO:0000963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Cysteine","termid":"PBO:0000963"}


id: PR:000050533
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H4, hhf2 gene translation product (Schizosaccharomyces pombe) that has had the initiator methionine removed and that has been dimethylated at the position equivalent to Lys-21 of the amino acid sequence represented by UniProtKB:P09322. UniProtKB:P09322, 2-103, Lys-21, MOD:00084.","definition_xrefs":["PMID:22150589","PomBase:VW","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H4, hhf2 gene translation product (Schizosaccharomyces pombe)","termid":"PR:000050527"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hhf2/Me2(K20)","pombase_gene_id":"SPBC8D2.03c","synonyms":[{"name":"PRO_0000158357, Lys-21, MOD:00084","type":"exact"},{"name":"PomBase_original_PRO_term_name: histone H4, hhf2 gene translation product, initiator methionine removed dimethylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-hhf2/InitMet-/Me2:1","type":"exact"},{"name":"UniProtKB:P09322, 2-103, Lys-21, MOD:00084","type":"broad"},{"name":"hhf2/Me2(K20)","type":"exact"},{"name":"histone H4 K20me2 (Schizosaccharomyces pombe)","type":"broad"},{"name":"histone H4 hhf2 K20me2 (Schizosaccharomyces pombe)","type":"exact"}],"termid":"PR:000050533"}


id: PBO:0051914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrin subunit beta 1 binding protein 1","termid":"PBO:0051914"}


id: PBO:0028789
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_heterochromatin_assembly_at_centromere_outer_repeat","termid":"PBO:0028789"}


id: FYPO:0006029
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin filament depolymerization, i.e. the removal of actin monomers from a filament, occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah","PMID:11694585"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin filament organization during vegetative growth","termid":"FYPO:0000727"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0004803"],"is_obsolete":false,"name":"decreased actin filament depolymerization","synonyms":[{"name":"decreased actin filament depolymerisation","type":"exact"},{"name":"decreased actin filament depolymerization during mitotic cell cycle","type":"related"},{"name":"decreased actin filament depolymerization during vegetative growth","type":"exact"},{"name":"reduced actin filament depolymerization","type":"exact"}],"termid":"FYPO:0006029"}


id: FYPO:0000233
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form cytoplasmic microtubules that are longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long microtubules","termid":"FYPO:0000055"},{"relation_name":"is_a","term_name":"abnormal cytoplasmic microtubules","termid":"FYPO:0004088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000054","FYPO:0000002","FYPO:0005447","FYPO:0002399"],"is_obsolete":false,"name":"long cytoplasmic microtubules","synonyms":[{"name":"elongated cytoplasmic microtubules","type":"exact"},{"name":"long cytoplasmic microtubules during mitotic cell cycle","type":"related"},{"name":"long cytoplasmic microtubules during vegetative growth","type":"exact"},{"name":"microtubule organization defect, long cytoplasmic microtubules","type":"exact"},{"name":"microtubule organization defects, long cytoplasmic microtubules","type":"exact"}],"termid":"FYPO:0000233"}


id: GO:0004650
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.","definition_xrefs":["EC:3.2.1.15"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0016798","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"polygalacturonase activity","secondary_identifiers":["MetaCyc:RXN-2103"],"synonyms":[{"name":"endo-D-galacturonase activity","type":"exact"},{"name":"endo-polygalacturonase activity","type":"exact"},{"name":"endogalacturonase activity","type":"exact"},{"name":"endopolygalacturonase activity","type":"exact"},{"name":"pectin depolymerase activity","type":"narrow"},{"name":"pectin hydrolase activity","type":"related"},{"name":"pectin polygalacturonase activity","type":"related"},{"name":"pectinase activity","type":"narrow"},{"name":"pectolase activity","type":"related"},{"name":"poly(1,4-alpha-D-galacturonide) glycanohydrolase activity","type":"exact"},{"name":"poly-alpha-1,4-galacturonide glycanohydrolase activity","type":"exact"}],"termid":"GO:0004650"}


id: PBO:0077999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF receptor associated factor 3","termid":"PBO:0077999"}


id: PR:Q09688
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug121 gene.","definition_xrefs":["UniProtKB:Q09688","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 121 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13C5.06c","synonyms":[{"name":"Spom972h-mug121","type":"exact"}],"termid":"PR:Q09688"}


id: GO:0102517
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: oleoyl-CoA + NADH + O2 + H+ = ricinoleyl-CoA + NAD + H2O.","definition_xrefs":["GOC:pz","EC:1.14.13.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"oleate 12-hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-14487"],"termid":"GO:0102517"}


id: PBO:0075569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scaffold protein involved in DNA repair","termid":"PBO:0075569"}


id: PBO:0016927
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae NSR1","termid":"PBO:0016927"}


id: GO:0061413
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transcription regulation process in which the presence of a nonfermentable carbon source leads to the modulation of the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other carbon sources.","definition_xrefs":["GOC:dph","PMID:19686338"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon catabolite regulation of transcription from RNA polymerase II promoter","termid":"GO:0000429"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"}],"interesting_parent_ids":["GO:0006355","GO:0010467","GO:0008150","GO:0006351"],"is_obsolete":false,"name":"regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source","termid":"GO:0061413"}


id: PBO:0079192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis specific protein Y-linked 21, pseudogene","termid":"PBO:0079192"}


id: PR:000044575
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the rad9 gene Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair protein rad9 (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC664.07c","synonyms":[{"name":"SPAC664.07c","type":"related"},{"name":"Spom-rad9","type":"exact"}],"termid":"PR:000044575"}


id: GO:0086058
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a calcium ion by a voltage-gated channel across the plasma membrane of an Purkinje myocyte cell that contributes to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated calcium channel activity involved in cardiac muscle cell action potential","termid":"GO:0086007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"voltage-gated calcium channel activity involved in Purkinje myocyte cell action potential","termid":"GO:0086058"}


id: GO:0004702
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Conveys a signal from an upstream receptor or intracellular signal transducer by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.","definition_xrefs":["GOC:bf","GOC:mah","EC:2.7.11.13"],"gene_count":0,"genotype_count":0,"name":"obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity (obsolete GO:0004702)","secondary_identifiers":["EC:2.7.11.-"],"synonyms":[{"name":"receptor signaling protein serine/threonine kinase activity","type":"exact"},{"name":"receptor signalling protein serine/threonine kinase activity","type":"exact"}],"termid":"GO:0004702"}


id: FYPO:0003338
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of the actomyosin contractile ring is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton morphology during vegetative growth","termid":"FYPO:0000350"},{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring","termid":"FYPO:0004736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0004803","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000631"],"is_obsolete":false,"name":"abnormal actomyosin contractile ring morphology","synonyms":[{"name":"abnormal actomyosin contractile ring morphology during mitotic cell cycle","type":"related"},{"name":"abnormal actomyosin contractile ring morphology during vegetative growth","type":"exact"},{"name":"abnormal contractile ring morphology","type":"exact"},{"name":"abnormal cytokinetic contractile ring morphology","type":"exact"},{"name":"abnormal mitotic contractile ring morphology","type":"exact"}],"termid":"FYPO:0003338"}


id: GO:0010134
data:
  {"annotated_genes":["SJAG_03475"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103584],"is_not":false,"summary":null,"term":"GO:0010134"}]},"cv_name":"biological_process","definition":"The pathway by which inorganic sulfate is activated, reduced and incorporated into sulfated compounds, where the activated sulfate, adenylyl-sulfate, is reduced to sulfite by the activity of adenylyl-sulfate reductase.","definition_xrefs":["EC:1.8.99.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfate assimilation","termid":"GO:0000103"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03475":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"sulfate assimilation via adenylyl sulfate reduction","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:SULFMETII-PWY"],"synonyms":[{"name":"sulphate assimilation via adenylyl sulphate reduction","type":"exact"}],"termid":"GO:0010134","terms_by_termid":{"GO:0010134":null}}


id: PBO:0045119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DMRT like family B with proline rich C-terminal 1","termid":"PBO:0045119"}


id: GO:0030435
data:
  {"annotated_genes":["SJAG_04853","SJAG_04184","SJAG_04236","SJAG_04238","SJAG_03746","SJAG_03057","SJAG_04868","SJAG_04922","SJAG_02320","SJAG_01662","SJAG_02248","SJAG_03915","SJAG_00993","SJAG_03536","SJAG_03013","SJAG_04470","SJAG_04859","SJAG_03090","SJAG_04901","SJAG_03557","SJAG_00405","SJAG_04271","SJAG_04080","SJAG_03587","SJAG_04615","SJAG_01321","SJAG_05309","SJAG_04010","SJAG_04140","SJAG_02718","SJAG_00663","SJAG_01483","SJAG_02529","SJAG_03250","SJAG_02736","SJAG_00971","SJAG_03688","SJAG_01531","SJAG_00114","SJAG_04275","SJAG_01017","SJAG_02169","SJAG_04781","SJAG_02712","SJAG_00974","SJAG_00821","SJAG_00486","SJAG_02241","SJAG_01769","SJAG_04483","SJAG_00826"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107378],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0072316"},{"annotations":[114562,108774,100210,96805,93039,107574,106185,92623,110004,103790,101183,91474,92972],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030437"},{"annotations":[107379],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071998"},{"annotations":[90566],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034413"},{"annotations":[84365,113816,86376,87869],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030476"},{"annotations":[105374],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034412"},{"annotations":[105145,113826,100253,113817],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070591"},{"annotations":[84853],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034217"},{"annotations":[87602,93686,101034,105375,106186],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031321"},{"annotations":[91475,93646,94916,112984,103453,93687,114856,95978,95910,95909,106187,101349,97791,87395,114563,110005,115037],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032120"},{"annotations":[92973,102897,95912,93647,99003,103791,110006,95911,88394,100211],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031322"},{"annotations":[107380,90126],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0072000"},{"annotations":[107265],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0075297"},{"annotations":[98372],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0075296"},{"annotations":[86850],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1903024"},{"annotations":[88289],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0034307"},{"annotations":[102074,95914,112036,90607,96197,95913],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070583"}]},"cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and desiccation resistance, and/or for reproduction.","definition_xrefs":["GOC:pamgo_curators","GOC:mah","ISBN:0072992913"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sporulation","termid":"GO:0043934"},{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"}],"gene_count":51,"genes_by_uniquename":{"SJAG_00114":null,"SJAG_00405":null,"SJAG_00486":null,"SJAG_00663":null,"SJAG_00821":null,"SJAG_00826":null,"SJAG_00971":null,"SJAG_00974":null,"SJAG_00993":null,"SJAG_01017":null,"SJAG_01321":null,"SJAG_01483":null,"SJAG_01531":null,"SJAG_01662":null,"SJAG_01769":null,"SJAG_02169":null,"SJAG_02241":null,"SJAG_02248":null,"SJAG_02320":null,"SJAG_02529":null,"SJAG_02712":null,"SJAG_02718":null,"SJAG_02736":null,"SJAG_03013":null,"SJAG_03057":null,"SJAG_03090":null,"SJAG_03250":null,"SJAG_03536":null,"SJAG_03557":null,"SJAG_03587":null,"SJAG_03688":null,"SJAG_03746":null,"SJAG_03915":null,"SJAG_04010":null,"SJAG_04080":null,"SJAG_04140":null,"SJAG_04184":null,"SJAG_04236":null,"SJAG_04238":null,"SJAG_04271":null,"SJAG_04275":null,"SJAG_04470":null,"SJAG_04483":null,"SJAG_04615":null,"SJAG_04781":null,"SJAG_04853":null,"SJAG_04859":null,"SJAG_04868":null,"SJAG_04901":null,"SJAG_04922":null,"SJAG_05309":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sporulation resulting in formation of a cellular spore","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Sporogenesis"],"synonyms":[{"name":"spore differentiation","type":"exact"},{"name":"cellular spore formation by sporulation","type":"exact"},{"name":"spore biosynthesis","type":"exact"},{"name":"spore formation","type":"exact"}],"termid":"GO:0030435","terms_by_termid":{"GO:0030437":null,"GO:0030476":null,"GO:0031321":null,"GO:0031322":null,"GO:0032120":null,"GO:0034217":null,"GO:0034307":null,"GO:0034412":null,"GO:0034413":null,"GO:0070583":null,"GO:0070591":null,"GO:0071998":null,"GO:0072000":null,"GO:0072316":null,"GO:0075296":null,"GO:0075297":null,"GO:1903024":null}}


id: PBO:0026897
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_phosphorylation_during_nitrogen_starvation","termid":"PBO:0026897"}


id: FYPO:0006268
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which dimethylation of lysine at position 9 of histone H3 in regions containing protein-coding genes occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K9 dimethylation during vegetative growth","termid":"FYPO:0000873"},{"relation_name":"is_a","term_name":"increased histone H3-K9 methylation at protein coding gene during vegetative growth","termid":"FYPO:0003102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0002274","FYPO:0002494"],"is_obsolete":false,"name":"increased histone H3-K9 dimethylation at protein coding gene during vegetative growth","synonyms":[{"name":"increased histone H3 K9 dimethylation at protein coding gene during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 dimethylation at protein coding gene during mitotic cell cycle","type":"related"},{"name":"increased histone H3-K9 dimethylation at protein-coding gene during vegetative growth","type":"exact"},{"name":"increased histone H3K9me2 at protein coding gene during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 dimethylation at protein coding gene during vegetative growth","type":"exact"}],"termid":"FYPO:0006268"}


id: FYPO:0001441
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of the SAGA complex to chromatin at promoters is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during vegetative growth","termid":"FYPO:0000443"},{"relation_name":"is_a","term_name":"abnormal protein complex localization","termid":"FYPO:0001440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"decreased SAGA complex localization to promoter region","synonyms":[{"name":"decreased SAGA complex localisation to promoter region","type":"exact"},{"name":"decreased SAGA complex localization to promoter region during mitotic cell cycle","type":"related"},{"name":"decreased SAGA complex localization to promoter region during vegetative growth","type":"exact"},{"name":"decreased SAGA complex localization to transcription regulatory region","type":"exact"},{"name":"decreased SAGA complex recruitment","type":"exact"},{"name":"reduced SAGA complex localization to promoter region","type":"exact"},{"name":"reduced SAGA complex recruitment","type":"exact"}],"termid":"FYPO:0001441"}


id: GO:1904124
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of a microglial cell from one site to another.","definition_xrefs":["GOC:nc","GOC:TermGenie","PMID:19100238","GOC:BHF","GO_REF:0000091"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell migration","termid":"GO:0008347"},{"relation_name":"is_a","term_name":"macrophage migration","termid":"GO:1905517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"microglial cell migration","termid":"GO:1904124"}


id: GO:0039629
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=219 symmetry. T=219 icosahedral capsid is composed of 12 pentameric and 2180 hexameric capsomeres for a total of 13140 capsid proteins.","definition_xrefs":["UniProtKB-KW:KW-1151","GOC:plm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"icosahedral viral capsid","termid":"GO:0019030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"T=219 icosahedral capsid","termid":"GO:0039629"}


id: PBO:0064847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory inhibitor subunit 14A","termid":"PBO:0064847"}


id: GO:0046811
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of histone deacetylase, which catalyzes of the removal of acetyl groups from histones, proteins complexed to DNA in chromatin and chromosomes.","definition_xrefs":["GOC:ai","PMID:10482575"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme inhibitor activity","termid":"GO:0004857"},{"relation_name":"is_a","term_name":"histone deacetylase regulator activity","termid":"GO:0035033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0004857"}],"interesting_parent_ids":["GO:0004857","GO:0003674","GO:0140678","GO:0030234","GO:0098772"],"is_obsolete":false,"name":"histone deacetylase inhibitor activity","termid":"GO:0046811"}


id: GO:0032394
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with an MHC class Ib protein complex and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. Class Ib here refers to non-classical class I molecules, such as those of the CD1 or HLA-E gene families.","definition_xrefs":["ISBN:0781735149","GOC:signaling","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"},{"relation_name":"is_a","term_name":"immune receptor activity","termid":"GO:0140375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"MHC class Ib receptor activity","synonyms":[{"name":"T cell receptor activity","type":"related"},{"name":"alpha-beta T cell receptor activity","type":"related"},{"name":"gamma-delta T cell receptor activity","type":"related"}],"termid":"GO:0032394"}


id: PBO:0066194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 14","termid":"PBO:0066194"}


id: PBO:0060600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-SMC condensin II complex subunit G2","termid":"PBO:0060600"}


id: PBO:0062831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"odd-skipped related transcription factor 1","termid":"PBO:0062831"}


id: PBO:0043852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cellular retinoic acid binding protein 1","termid":"PBO:0043852"}


id: PBO:0046126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4E pseudogene 5","termid":"PBO:0046126"}


id: PATO:0001934
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being perfectly circular.","definition_xrefs":["ISBN:0881923214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"circular","termid":"PATO:0000411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orbicular","termid":"PATO:0001934"}


id: GO:0016353
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete carbamate susceptibility/resistance (obsolete GO:0016353)","synonyms":[{"name":"carbamate susceptibility/resistance","type":"exact"}],"termid":"GO:0016353"}


id: PBO:0048534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gem nuclear organelle associated protein 8","termid":"PBO:0048534"}


id: FYPO:0004281
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of xanthine DNA N-glycosylase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA N-glycosylase activity","termid":"FYPO:0008216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000707","FYPO:0000654","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"abnormal xanthine DNA N-glycosylase activity","termid":"FYPO:0004281"}


id: PR:P0CG72
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A polyubiquitin-B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyubiquitin (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC337.08c","secondary_identifiers":["UniProtKB:P0CG72"],"synonyms":[{"name":"SPBC337.08c","type":"related"},{"name":"Spom972h-UBB","type":"exact"}],"termid":"PR:P0CG72"}


id: GO:0007161
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The binding of a cell to the extracellular matrix via adhesion molecules that do not require the presence of calcium for the interaction.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-matrix adhesion","termid":"GO:0007160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"calcium-independent cell-matrix adhesion","synonyms":[{"name":"calcium-independent cell adhesion molecule activity","type":"related"}],"termid":"GO:0007161"}


id: FYPO:0000025
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell has a larger volume than normal. In a swollen cell, both length and diameter are greater than normal, although the cell is only considered elongated if the length:diameter ratio is also greater than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cell size","termid":"FYPO:0008096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"swollen cell","synonyms":[{"name":"cell morphology, swollen cells","type":"exact"},{"name":"enlarged cell","type":"related"},{"name":"increased cell size","type":"related"},{"name":"increased cell volume","type":"exact"},{"name":"large cell","type":"related"}],"termid":"FYPO:0000025"}


id: PBO:0052770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 62","termid":"PBO:0052770"}


id: GO:0044162
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a host cell cytoplasmic vesicle.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell membrane","termid":"GO:0033644"},{"relation_name":"is_a","term_name":"host cell cytoplasm part","termid":"GO:0033655"},{"relation_name":"part_of","term_name":"host cell cytoplasmic vesicle","termid":"GO:0044161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell cytoplasmic vesicle membrane","termid":"GO:0044162"}


id: SO:0001685
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The score of an experimentally derived feature such as a p-value.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"experimental_feature_attribute","termid":"SO:0001684"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"score","termid":"SO:0001685"}


id: GO:0035933
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of any glucocorticoid hormone into the circulatory system. Glucocorticoids are a class of steroid hormones that regulate a variety of physiological processes, in particular control of the concentration of glucose in blood.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"corticosteroid hormone secretion","termid":"GO:0035930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0023052","GO:0006810"],"is_obsolete":false,"name":"glucocorticoid secretion","termid":"GO:0035933"}


id: PBO:0027994
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_activation_of_monopolar_cell_growth","termid":"PBO:0027994"}


id: PBO:0084039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI-anchored protein involved in cell wall remodeling; involved in the assembly of the cell wall chitin-glucan structure and repair of damage caused by the antifungal agent polyhexamethylene biguanide; role in the cell wall integrity pathway; expression is upregulated in response to cell wall stress; transported to the cell surface after Pmt1p-Pmt2p-mediated O-mannosylation, colocalizing with bud scars","termid":"PBO:0084039"}


id: PBO:0048054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin heavy chain 1 pseudogene 3","termid":"PBO:0048054"}


id: PBO:0047853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(1)(q21)","termid":"PBO:0047853"}


id: PBO:0005167
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rik1-Associated Factor","termid":"PBO:0005167"}


id: SO:1000083
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Sequence variant increases the stability (half-life) of the transcript.","definition_xrefs":["EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000083 sequence_variant_increasing_transcript_stability (obsolete SO:1000083)","synonyms":[{"name":"mutation increasing transcript stability","type":"related"},{"name":"sequence variant increasing transcript stability","type":"exact"}],"termid":"SO:1000083"}


id: GO:0075239
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a diploid cell undergoes meiosis, and the meiotic products acquire specialized features of asexual motile mononucleate flagellated spores called zoospores.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sporangiospore formation","termid":"GO:0034300"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"zoospore formation","termid":"GO:0075239"}


id: PBO:0002449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA 2'-phosphotransferase Tpt1 (predicted)","termid":"PBO:0002449"}


id: PBO:0065217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoribosyl pyrophosphate synthetase 2","termid":"PBO:0065217"}


id: PBO:0090274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cystathionine beta-lyase Cbl1","termid":"PBO:0090274"}


id: PBO:0031814
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_autophagy","termid":"PBO:0031814"}


id: _global:hyperparasitized_by
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"inverse of hyperparasite of","direct_ancestors":[{"relation_name":"is_a","term_name":"host_of","termid":"_global:host_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperparasitized_by","secondary_identifiers":["RO:0002554"],"synonyms":[{"name":"has epiparasite","type":"related"},{"name":"has hyperparasite","type":"related"},{"name":"hyperparasitoidized by","type":"related"}],"termid":"_global:hyperparasitized_by"}


id: GO:1904407
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of nitric oxide metabolic process.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:11991626"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of metabolic process","termid":"GO:0009893"},{"relation_name":"is_a","term_name":"regulation of nitric oxide metabolic process","termid":"GO:0080164"},{"relation_name":"positively_regulates","term_name":"nitric oxide metabolic process","termid":"GO:0046209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of nitric oxide metabolic process","synonyms":[{"name":"activation of nitric oxide metabolic process","type":"narrow"},{"name":"activation of nitric oxide metabolism","type":"narrow"},{"name":"positive regulation of nitric oxide metabolism","type":"exact"},{"name":"up regulation of nitric oxide metabolic process","type":"exact"},{"name":"up regulation of nitric oxide metabolism","type":"exact"},{"name":"up-regulation of nitric oxide metabolic process","type":"exact"},{"name":"up-regulation of nitric oxide metabolism","type":"exact"},{"name":"upregulation of nitric oxide metabolic process","type":"exact"},{"name":"upregulation of nitric oxide metabolism","type":"exact"}],"termid":"GO:1904407"}


id: GO:0090287
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stimulus","termid":"GO:0048583"},{"relation_name":"regulates","term_name":"cellular response to growth factor stimulus","termid":"GO:0071363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular response to growth factor stimulus","termid":"GO:0090287"}


id: GO:0103047
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: methyl beta-D-glucoside 6-phosphate + H2O = beta-D-glucose 6-phosphate + methanol.","definition_xrefs":["GOC:pz","EC:3.2.1.86"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0016798","GO:0003824"],"is_obsolete":false,"name":"methyl beta-D-glucoside 6-phosphate glucohydrolase activity","secondary_identifiers":["MetaCyc:RXN0-6994"],"termid":"GO:0103047"}


id: PBO:0073164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC63 homolog, protein translocation regulator pseudogene 1","termid":"PBO:0073164"}


id: PBO:0017437
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-related_via_localization_to","termid":"PBO:0017437"}


id: GO:0042751
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism enters and maintains a period of dormancy, similar to hibernation, but that occurs during the summer. It insulates against heat to prevent the harmful effects of the season.","definition_xrefs":["GOC:jl","PMID:12443930","Wikipedia:Estivation"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dormancy process","termid":"GO:0022611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"estivation","synonyms":[{"name":"aestivation","type":"exact"}],"termid":"GO:0042751"}


id: GO:0046607
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the centrosome cycle.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of centrosome cycle","termid":"GO:0046605"},{"relation_name":"is_a","term_name":"positive regulation of cytoskeleton organization","termid":"GO:0051495"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle process","termid":"GO:0090068"},{"relation_name":"positively_regulates","term_name":"centrosome cycle","termid":"GO:0007098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007010"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0007010","GO:0008150"],"is_obsolete":false,"name":"positive regulation of centrosome cycle","synonyms":[{"name":"activation of centrosome cycle","type":"narrow"},{"name":"stimulation of centrosome cycle","type":"narrow"},{"name":"up regulation of centrosome cycle","type":"exact"},{"name":"up-regulation of centrosome cycle","type":"exact"},{"name":"upregulation of centrosome cycle","type":"exact"}],"termid":"GO:0046607"}


id: GO:0031494
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mating type switching, the conversion of a single-cell organism from one mating type to another by the precise replacement of a DNA sequence at the expressed mating type locus with a copy of a sequence from a donor locus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"mating type switching","termid":"GO:0007533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mating type switching","termid":"GO:0031494"}


id: GO:0002714
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of B cell mediated immunity.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of lymphocyte mediated immunity","termid":"GO:0002708"},{"relation_name":"is_a","term_name":"regulation of B cell mediated immunity","termid":"GO:0002712"},{"relation_name":"is_a","term_name":"positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains","termid":"GO:0002824"},{"relation_name":"positively_regulates","term_name":"B cell mediated immunity","termid":"GO:0019724"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of B cell mediated immunity","synonyms":[{"name":"activation of B cell mediated immunity","type":"narrow"},{"name":"positive regulation of B lymphocyte mediated immunity","type":"exact"},{"name":"positive regulation of B-cell mediated immunity","type":"exact"},{"name":"positive regulation of B-lymphocyte mediated immunity","type":"exact"},{"name":"stimulation of B cell mediated immunity","type":"narrow"},{"name":"up regulation of B cell mediated immunity","type":"exact"},{"name":"up-regulation of B cell mediated immunity","type":"exact"},{"name":"upregulation of B cell mediated immunity","type":"exact"}],"termid":"GO:0002714"}


id: FYPO:0000361
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of the nucleolus is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"output_of","term_name":"abnormal nucleolus organization","termid":"FYPO:0000814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal nucleolar morphology","synonyms":[{"name":"abnormal nucleolar morphology during mitotic cell cycle","type":"related"},{"name":"abnormal nucleolar morphology during vegetative growth","type":"exact"},{"name":"nucleolar morphology: abnormal","type":"related"}],"termid":"FYPO:0000361"}


id: GO:0019061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which an incoming virus is disassembled in the host cell to release a replication-competent viral genome.","definition_xrefs":["ISBN:0781702534","GOC:plm","PMID:8162442"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"uncoating of virus","synonyms":[{"name":"viral uncoating","type":"exact"}],"termid":"GO:0019061"}


id: GO:0010426
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The covalent transfer of a methyl group, to C-5 or N-4, of a cytosine located within an asymmetric CHH sequence in a DNA molecule. H stands for an adenine, cytosine, or thymine nucleotide.","definition_xrefs":["GOC:mah","PMID:15861207","PMID:17239600","GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA methylation on cytosine within a CHH sequence (obsolete GO:0010426)","synonyms":[{"name":"DNA methylation on cytosine within a CNN sequence","type":"exact"},{"name":"cytosine methylation within a CHH sequence","type":"exact"},{"name":"cytosine methylation within a CNN sequence","type":"exact"}],"termid":"GO:0010426"}


id: PBO:0031896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Tor2","termid":"PBO:0031896"}


id: GO:0075170
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its symbiont protein kinase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of protein kinase-mediated signal transduction in response to host (obsolete GO:0075170)","synonyms":[{"name":"negative regulation of symbiont protein kinase-mediated signal transduction in response to host","type":"exact"}],"termid":"GO:0075170"}


id: PBO:0040840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BLCAP apoptosis inducing factor","termid":"PBO:0040840"}


id: PBO:0061845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oncoprotein induced transcript 3","termid":"PBO:0061845"}


id: GO:0050735
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a malonyl group to a nitrogen atom on the acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acyltransferase activity","termid":"GO:0016410"},{"relation_name":"is_a","term_name":"malonyltransferase activity","termid":"GO:0016420"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"N-malonyltransferase activity","termid":"GO:0050735"}


id: PBO:0025532
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta-ketothiolase deficiency","termid":"PBO:0025532"}


id: GO:0102392
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: decanoate + ATP(4-) + an HmqF protein = AMP(2-) + diphosphoric acid + a decanoyl-HmqF protein.","definition_xrefs":["GOC:pz","EC:6.2.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"decanoate-[HmqF protein] ligase activity","secondary_identifiers":["MetaCyc:RXN-13623"],"termid":"GO:0102392"}


id: PBO:0038903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adhesion G protein-coupled receptor D1","termid":"PBO:0038903"}


id: PBO:0090575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b5","termid":"PBO:0090575"}


id: SO:0002270
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"RTE retrotransposons are LINE elements (SO:0000194) that contain a domain with homology to the apurinic-apyrimidic (AP) endonucleases in addition to the previously identified reverse transcriptase domain.","definition_xrefs":["PMID:9729877"],"direct_ancestors":[{"relation_name":"is_a","term_name":"LINE_element","termid":"SO:0000194"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RTE_LINE_retrotransposon","synonyms":[{"name":"RIT retrotransposon","type":"exact"},{"name":"RTE LINE retrotransposon","type":"exact"},{"name":"RTE retrotransposon","type":"exact"}],"termid":"SO:0002270"}


id: PBO:0056210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member B5","termid":"PBO:0056210"}


id: GO:0045967
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces the rate of growth of all or part of an organism.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of growth rate","termid":"GO:0040009"},{"relation_name":"is_a","term_name":"negative regulation of growth","termid":"GO:0045926"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of growth rate","synonyms":[{"name":"down regulation of growth rate","type":"exact"},{"name":"down-regulation of growth rate","type":"exact"},{"name":"downregulation of growth rate","type":"exact"},{"name":"inhibition of growth rate","type":"narrow"}],"termid":"GO:0045967"}


id: PR:Q9P4X1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pdi4 gene.","definition_xrefs":["UniProtKB:Q9P4X1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin domain-containing protein C959.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC959.05c","synonyms":[{"name":"Spom972h-pdi4","type":"exact"},{"name":"protein disulfide isomerase C959.05c (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P4X1"}


id: PBO:0003559
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paroxysmal nocturnal haemoglobinuri","termid":"PBO:0003559"}


id: PBO:0072957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sciellin","termid":"PBO:0072957"}


id: GO:0043865
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of methionine from one side of a membrane to the other.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur amino acid transmembrane transporter activity","termid":"GO:0000099"},{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"amino acid transmembrane transporter activity","termid":"GO:0015171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"methionine transmembrane transporter activity","secondary_identifiers":["GO:1990240"],"synonyms":[{"name":"methionine importer","type":"related"},{"name":"methionine importer activity","type":"narrow"},{"name":"methionine importing activity","type":"narrow"},{"name":"methionine-importing activity","type":"narrow"}],"termid":"GO:0043865"}


id: PBO:0089307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIM23 translocase complex subunit Tim17","termid":"PBO:0089307"}


id: GO:0071957
data:
  {"annotated_genes":["SJAG_04140","SJAG_02609","SJAG_04468","SJAG_03048","SJAG_01386","SJAG_03508","SJAG_06270","SJAG_05196","SJAG_04943","SJAG_04558","SJAG_01082","SJAG_02514","SJAG_01215","SJAG_03835","SJAG_03936"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[88936,91747,95750,98440,98898,101096,102442,103609,104916,105683,106592,106652,107262,108907,110558],"is_not":false,"summary":null,"term":"GO:0071957"}]},"cv_name":"cellular_component","definition":"The spindle pole body that exists in a cell prior to spindle pole body duplication. An old spindle pole body segregates to the daughter cell upon mitosis, and lacks active proteins involved in signaling exit from mitosis.","definition_xrefs":["GOC:vw","PMID:15132994","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic spindle pole body","termid":"GO:0044732"}],"gene_count":15,"genes_by_uniquename":{"SJAG_01082":null,"SJAG_01215":null,"SJAG_01386":null,"SJAG_02514":null,"SJAG_02609":null,"SJAG_03048":null,"SJAG_03508":null,"SJAG_03835":null,"SJAG_03936":null,"SJAG_04140":null,"SJAG_04468":null,"SJAG_04558":null,"SJAG_04943":null,"SJAG_05196":null,"SJAG_06270":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"is_a","termid":"GO:0005816"}],"interesting_parent_ids":["GO:0005816","GO:0015630","GO:0005575"],"is_obsolete":false,"name":"old mitotic spindle pole body","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"old SPB","type":"exact"}],"termid":"GO:0071957","terms_by_termid":{"GO:0071957":null}}


id: PBO:0039035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with GTPase domain, ankyrin repeat and PH domain 12, pseudogene","termid":"PBO:0039035"}


id: PBO:0050178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-hydroxy-3-methylglutaryl-CoA lyase","termid":"PBO:0050178"}


id: PBO:0042701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CELF2 antisense RNA 1","termid":"PBO:0042701"}


id: GO:0072234
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of a metanephric nephron tubule over time, from its initial formation to the mature structure. A metanephric nephron tubule is an epithelial tube that is part of the metanephric nephron, the functional part of the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron tubule development","termid":"GO:0072080"},{"relation_name":"is_a","term_name":"metanephric tubule development","termid":"GO:0072170"},{"relation_name":"is_a","term_name":"metanephric nephron epithelium development","termid":"GO:0072243"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric nephron tubule development","termid":"GO:0072234"}


id: GO:1900510
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of pentose catabolic process to ethanol.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of pentose catabolic process to ethanol (obsolete GO:1900510)","synonyms":[{"name":"down regulation of pentose catabolic process to ethanol","type":"exact"},{"name":"down regulation of pentose catabolism to ethanol","type":"exact"},{"name":"down-regulation of pentose catabolic process to ethanol","type":"exact"},{"name":"down-regulation of pentose catabolism to ethanol","type":"exact"},{"name":"downregulation of pentose catabolic process to ethanol","type":"exact"},{"name":"downregulation of pentose catabolism to ethanol","type":"exact"},{"name":"inhibition of pentose catabolic process to ethanol","type":"narrow"},{"name":"inhibition of pentose catabolism to ethanol","type":"exact"},{"name":"negative regulation of pentose catabolism to ethanol","type":"exact"}],"termid":"GO:1900510"}


id: GO:0120094
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops or reduces the rate of crotonylation of a lysine residue in a protein.","definition_xrefs":["PMID:28803779"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein modification process","termid":"GO:0031400"},{"relation_name":"is_a","term_name":"regulation of peptidyl-lysine crotonylation","termid":"GO:0120093"},{"relation_name":"negatively_regulates","term_name":"peptidyl-lysine crotonylation","termid":"GO:0140066"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of peptidyl-lysine crotonylation","termid":"GO:0120094"}


id: RO:0002566
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b","direct_ancestors":[{"relation_name":"is_a","term_name":"causal_relation_between_material_entities","termid":"RO:0002506"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"causally_influences","termid":"RO:0002566"}


id: GO:0016962
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete receptor-associated protein activity (obsolete GO:0016962)","synonyms":[{"name":"receptor-associated protein activity","type":"exact"}],"termid":"GO:0016962"}


id: PBO:0087472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of a two-component pyridoxal-5'-phosphate synthase; involved in pyridoxine (vitamin B6) biosynthesis from glyceraldehyde-3-phosphate, ribose-5-phosphate and ammonia liberated from glutamine by glutaminase; forms a complex with Sno1p that functions as an active glutaminase; member of a stationary phase-induced gene family where transcriptional induction occurs during the postdiauxic phase; co-regulated with SNO1; paralog of SNZ2 and SNZ3","termid":"PBO:0087472"}


id: PBO:0052809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 75","termid":"PBO:0052809"}


id: PBO:0082328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase of the ATP-binding cassette (ABC) family; involved in 40S and 60S ribosome biogenesis, has similarity to Gcn20p; important for disaggregation of ordered and disordered aggregates; shuttles from nucleus to cytoplasm, physically interacts with Tif6p, Lsg1p; human homolog ABCF2 can complement yeast ARB1 mutant","termid":"PBO:0082328"}


id: PBO:0012012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing protein, human NSRP1 ortholog","termid":"PBO:0012012"}


id: PBO:0077629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane O-mannosyltransferase targeting cadherins 1","termid":"PBO:0077629"}


id: FYPO:0002184
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which all cells in a population are inviable, and the population includes a mixture of ungerminated spores, germinated spores and tapered vegetative cells. The tapered cells arise from division of some of the germinated spores, and may form a microcolony of up to 64 cells.","definition_xrefs":["PomBase:mah","PomBase:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable mixed population including spores, germinated spores and tapered cells (obsolete FYPO:0002184)","synonyms":[{"name":"inviable mixed population including spores, germinated spores and bottle/skittle cells","type":"exact"},{"name":"inviable mixed population including spores, germinated spores and skittle-shaped cells","type":"exact"}],"termid":"FYPO:0002184"}


id: PBO:0031665
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_protein_modification","termid":"PBO:0031665"}


id: PBO:0083413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the essential gene RPL10 which encodes the ribosomal protein L10","termid":"PBO:0083413"}


id: PBO:0067063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 88, pseudogene","termid":"PBO:0067063"}


id: PBO:0031126
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-loss_of_viability_upon_nutrient_depletion","termid":"PBO:0031126"}


id: PBO:0050953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon gamma","termid":"PBO:0050953"}


id: PATO:0001855
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer's being in the plane of the horizon.","definition_xrefs":["thefreedictionary.com:thefreedictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"horizontal","termid":"PATO:0001855"}


id: GO:0033362
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate; in this pathway tetrahydrodipicolinate is converted to meso-diaminopimelate in two enzymatic steps.","definition_xrefs":["GOC:pr","MetaCyc:PWY-5097","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysine biosynthetic process via diaminopimelate","termid":"GO:0009089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"lysine biosynthetic process via diaminopimelate, diaminopimelate-aminotransferase pathway","synonyms":[{"name":"lysine anabolism via diaminopimelate, diaminopimelate-aminotransferase pathway","type":"exact"},{"name":"lysine biosynthesis via diaminopimelate, diaminopimelate-aminotransferase pathway","type":"exact"},{"name":"lysine formation via diaminopimelate, diaminopimelate-aminotransferase pathway","type":"exact"},{"name":"lysine synthesis via diaminopimelate, diaminopimelate-aminotransferase pathway","type":"exact"}],"termid":"GO:0033362"}


id: GO:0033647
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Organized structure of distinctive morphology and function, occurring within the host cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host intracellular part","termid":"GO:0033646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host intracellular organelle","termid":"GO:0033647"}


id: PR:Q9P7T4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mediator of replication checkpoint protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PomBase:MAH","PMID:14585996"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mediator of replication checkpoint protein 1","termid":"PR:000027605"},{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator of replication checkpoint protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC694.06c","secondary_identifiers":["UniProtKB:Q9P7T4","PR:000027606"],"synonyms":[{"name":"SPAC694.06C","type":"related"},{"name":"Spom972h-mrc1","type":"exact"}],"termid":"PR:Q9P7T4"}


id: PBO:0039338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alkaline phosphatase, placental","termid":"PBO:0039338"}


id: GO:0034510
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which centromeres are physically detached from each other during chromosome separation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"part_of","term_name":"chromosome separation","termid":"GO:0051304"},{"relation_name":"part_of","term_name":"nuclear chromosome segregation","termid":"GO:0098813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"centromere separation","termid":"GO:0034510"}


id: GO:0019461
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glutamine into fumarate, beginning with the conversion of glutamine to glutamate catalyzed by the enzyme glutamate synthase (NADPH) (EC:1.4.1.13).","definition_xrefs":["GOC:jl","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamine catabolic process to fumarate","termid":"GO:0019460"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"glutamine catabolic process to fumarate, using glutamate synthase (NADPH)","secondary_identifiers":["MetaCyc:GLUTAMINEFUM-PWY"],"synonyms":[{"name":"glutamate catabolic process to fumarate, using glutamate synthase (NADPH)","type":"related"},{"name":"glutamine breakdown to fumarate, using glutamate synthase (NADPH)","type":"exact"},{"name":"glutamine degradation to fumarate, using glutamate synthase (NADPH)","type":"exact"}],"termid":"GO:0019461"}


id: PBO:0040993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bolA family member 2 pseudogene 3","termid":"PBO:0040993"}


id: GO:0030131
data:
  {"annotated_genes":["SJAG_04565","SJAG_01167","SJAG_04931","SJAG_00104","SJAG_01809","SJAG_00379","SJAG_02805","SJAG_00800","SJAG_04609"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[107558],"is_not":false,"summary":null,"term":"GO:0030131"},{"annotations":[109065,108847,114902,97205],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030121"},{"annotations":[104401,92364,107715,107656],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030122"}]},"cv_name":"cellular_component","definition":"A membrane coat adaptor complex that links clathrin to a membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"AP-type membrane coat adaptor complex","termid":"GO:0030119"},{"relation_name":"part_of","term_name":"clathrin coat","termid":"GO:0030118"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00104":null,"SJAG_00379":null,"SJAG_00800":null,"SJAG_01167":null,"SJAG_01809":null,"SJAG_02805":null,"SJAG_04565":null,"SJAG_04609":null,"SJAG_04931":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"clathrin adaptor complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0030131","terms_by_termid":{"GO:0030121":null,"GO:0030122":null,"GO:0030131":null}}


id: GO:0009009
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the formation of new phosphodiester bonds between a pair of short, unique target DNA sequences.","definition_xrefs":["GOC:elh","PMID:6286142"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integrase activity","termid":"GO:0008907"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0140097"],"is_obsolete":false,"name":"site-specific recombinase activity","synonyms":[{"name":"RecA-family recombinase activity","type":"exact"}],"termid":"GO:0009009"}


id: PBO:0074178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 38 member 1","termid":"PBO:0074178"}


id: PBO:0070633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 4","termid":"PBO:0070633"}


id: GO:1904277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of wax biosynthetic process.","definition_xrefs":["PMID:24692420","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of lipid biosynthetic process","termid":"GO:0051055"},{"relation_name":"is_a","term_name":"regulation of wax biosynthetic process","termid":"GO:1904276"},{"relation_name":"negatively_regulates","term_name":"wax biosynthetic process","termid":"GO:0010025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"negative regulation of wax biosynthetic process","synonyms":[{"name":"down regulation of wax anabolism","type":"exact"},{"name":"down regulation of wax biosynthesis","type":"exact"},{"name":"down regulation of wax biosynthetic process","type":"exact"},{"name":"down regulation of wax formation","type":"exact"},{"name":"down regulation of wax synthesis","type":"exact"},{"name":"down-regulation of wax anabolism","type":"exact"},{"name":"down-regulation of wax biosynthesis","type":"exact"},{"name":"down-regulation of wax biosynthetic process","type":"exact"},{"name":"down-regulation of wax formation","type":"exact"},{"name":"down-regulation of wax synthesis","type":"exact"},{"name":"downregulation of wax anabolism","type":"exact"},{"name":"downregulation of wax biosynthesis","type":"exact"},{"name":"downregulation of wax biosynthetic process","type":"exact"},{"name":"downregulation of wax formation","type":"exact"},{"name":"downregulation of wax synthesis","type":"exact"},{"name":"inhibition of wax anabolism","type":"narrow"},{"name":"inhibition of wax biosynthesis","type":"narrow"},{"name":"inhibition of wax biosynthetic process","type":"narrow"},{"name":"inhibition of wax formation","type":"narrow"},{"name":"inhibition of wax synthesis","type":"narrow"},{"name":"negative regulation of wax anabolism","type":"exact"},{"name":"negative regulation of wax biosynthesis","type":"exact"},{"name":"negative regulation of wax formation","type":"exact"},{"name":"negative regulation of wax synthesis","type":"exact"}],"termid":"GO:1904277"}


id: GO:0006940
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of smooth muscle contraction.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle contraction","termid":"GO:0006937"},{"relation_name":"regulates","term_name":"smooth muscle contraction","termid":"GO:0006939"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of smooth muscle contraction","termid":"GO:0006940"}


id: GO:0060457
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of a digestive system process, a physical, chemical, or biochemical process carried out by living organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of digestive system process","termid":"GO:0044058"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"negatively_regulates","term_name":"digestive system process","termid":"GO:0022600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of digestive system process","termid":"GO:0060457"}


id: PR:P48010
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A septin-14 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01283","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin homolog spn5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC24C9.15c","secondary_identifiers":["UniProtKB:P48010"],"synonyms":[{"name":"Spom972h-SEPT14","type":"exact"},{"name":"mei4-dependent protein 9 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"meiotic expression up-regulated protein 28 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P48010"}


id: PBO:0048966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycosylphosphatidylinositol anchor attachment 1 pseudogene 1","termid":"PBO:0048966"}


id: MOD:00791
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamine residue to L-glutamic acid with one (18)O.","definition_xrefs":["Unimod:366#Q","PubMed:8382902"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deamidated L-glutamine","termid":"MOD:00685"},{"relation_name":"is_a","term_name":"1x(18)O labeled deamidated residue","termid":"MOD:00852"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1x(18)O labeled deamidated L-glutamine","synonyms":[{"name":"Deamidated:18O(1)","type":"related"},{"name":"Deamidation in presence of O18","type":"related"}],"termid":"MOD:00791"}


id: PBO:0001894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione S-transferase Gst3","termid":"PBO:0001894"}


id: PBO:0077269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM9B antisense RNA 1","termid":"PBO:0077269"}


id: PBO:0082981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic tyrosyl-tRNA synthetase; required for cytoplasmic protein synthesis; interacts with positions 34 and 35 of the tRNATyr anticodon; mutations in human ortholog YARS are associated with Charcot-Marie-Tooth (CMT) neuropathies; human ortholog YARS functionally complements the heat sensitivity of a ts allele; protein abundance increases in response to DNA replication stress","termid":"PBO:0082981"}


id: GO:0008482
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + O2 + sulfite = H2O2 + H+ + sulfate.","definition_xrefs":["RHEA:24600","EC:1.8.3.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor","termid":"GO:0016670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"sulfite oxidase activity","secondary_identifiers":["MetaCyc:PWY-5326","KEGG_REACTION:R00533","MetaCyc:SULFITE-OXIDASE-RXN","Reactome:R-HSA-1614544"],"synonyms":[{"name":"sulfite:oxygen oxidoreductase activity","type":"related"},{"name":"sulphite oxidase activity","type":"exact"}],"termid":"GO:0008482"}


id: PBO:0056623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MED4 antisense RNA 1","termid":"PBO:0056623"}


id: PBO:0056376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase 8 interacting protein 3","termid":"PBO:0056376"}


id: PBO:0109832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperone, AAA family ATPase Rvb1 Rvb2","termid":"PBO:0109832"}


id: PBO:0080868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YJU2 splicing factor homolog","termid":"PBO:0080868"}


id: FYPO:0007135
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the number of apurinic and ayprimidinic (collectively, AP) sites detected in DNA is greater than normal. An AP is a deoxyribose sugar with a missing base, and is formed by the enzymatic removal of a damaged base.","definition_xrefs":["PomBase:mah","PMID:12810074"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985"],"is_obsolete":false,"name":"increased level of AP sites in DNA","synonyms":[{"name":"increased level of DNA AP sites","type":"exact"},{"name":"increased level of DNA apurinic/apyrimidinic sites","type":"exact"},{"name":"increased level of apurinic/apyrimidinic sites in DNA","type":"exact"}],"termid":"FYPO:0007135"}


id: MOD:01328
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative - hydroxylethanone","definition_xrefs":["Unimod:6#W","PubMed:17525468"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iodoacetic acid derivatized residue","termid":"MOD:00399"},{"relation_name":"is_a","term_name":"modified L-tryptophan residue","termid":"MOD:00918"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iodoacetic acid - site W","synonyms":[{"name":"Carboxymethyl","type":"related"},{"name":"Iodoacetic acid derivative","type":"related"}],"termid":"MOD:01328"}


id: PR:O13863
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1B1.02c gene.","definition_xrefs":["UniProtKB:O13863","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized kinase C1B1.02c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1B1.02c","synonyms":[{"name":"Spom972h-SPAC1B1.02c","type":"exact"}],"termid":"PR:O13863"}


id: SO:0001360
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Five_methoxycarbonylmethyluridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_methoxycarbonylmethyluridine","secondary_identifiers":["RNAMOD:068"],"synonyms":[{"name":"5-methoxycarbonylmethyluridine","type":"exact"},{"name":"five methoxycarbonylmethyluridine","type":"exact"},{"name":"mcm5U","type":"exact"}],"termid":"SO:0001360"}


id: PBO:0048879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A6 family member E, pseudogene","termid":"PBO:0048879"}


id: GO:1903200
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of L-dopa decarboxylase activity.","definition_xrefs":["GOC:PARL","PMID:19703902","GOC:bf","GO_REF:0000059","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of lyase activity","termid":"GO:0051349"},{"relation_name":"is_a","term_name":"regulation of L-dopa decarboxylase activity","termid":"GO:1903198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of L-dopa decarboxylase activity","synonyms":[{"name":"up-regulation of DOPA decarboxylase activity","type":"exact"},{"name":"activation of 4-dihydroxyl-L-phenylalanine decarboxylase activity","type":"narrow"},{"name":"activation of DDC activity","type":"narrow"},{"name":"activation of DOPA decarboxylase activity","type":"narrow"},{"name":"activation of L-dopa decarboxylase activity","type":"narrow"},{"name":"positive regulation of 4-dihydroxyl-L-phenylalanine decarboxylase activity","type":"exact"},{"name":"positive regulation of DDC activity","type":"exact"},{"name":"positive regulation of DOPA decarboxylase activity","type":"exact"},{"name":"up regulation of 4-dihydroxyl-L-phenylalanine decarboxylase activity","type":"exact"},{"name":"up regulation of DDC activity","type":"exact"},{"name":"up regulation of DOPA decarboxylase activity","type":"exact"},{"name":"up regulation of L-dopa decarboxylase activity","type":"exact"},{"name":"up-regulation of 4-dihydroxyl-L-phenylalanine decarboxylase activity","type":"exact"},{"name":"up-regulation of DDC activity","type":"exact"},{"name":"up-regulation of L-dopa decarboxylase activity","type":"exact"},{"name":"upregulation of 4-dihydroxyl-L-phenylalanine decarboxylase activity","type":"exact"},{"name":"upregulation of DDC activity","type":"exact"},{"name":"upregulation of DOPA decarboxylase activity","type":"exact"},{"name":"upregulation of L-dopa decarboxylase activity","type":"exact"}],"termid":"GO:1903200"}


id: GO:1904624
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of glycine secretion, neurotransmission.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:22988142"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organic acid transport","termid":"GO:0032890"},{"relation_name":"is_a","term_name":"regulation of neurotransmitter secretion","termid":"GO:0046928"},{"relation_name":"is_a","term_name":"regulation of amino acid transport","termid":"GO:0051955"},{"relation_name":"is_a","term_name":"regulation of synaptic transmission, glycinergic","termid":"GO:0060092"},{"relation_name":"regulates","term_name":"glycine secretion, neurotransmission","termid":"GO:0061537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of glycine secretion, neurotransmission","termid":"GO:1904624"}


id: PBO:0045507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DST antisense RNA 1","termid":"PBO:0045507"}


id: PBO:0077030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"threonine synthase like 1","termid":"PBO:0077030"}


id: PR:000027728
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- myo2 gene or a 1:1 ortholog thereof.","definition_xrefs":["PRO:CNA","PMID:15184401"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin type-2 heavy chain 1","synonyms":[{"name":"Myosin type II heavy chain 1","type":"exact"},{"name":"myo2","type":"exact"}],"termid":"PR:000027728"}


id: GO:0046857
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces NAD or NADP.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on other nitrogenous compounds as donors","termid":"GO:0016661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor","secondary_identifiers":["EC:1.7.1.-","UM-BBD_enzymeID:e0346"],"termid":"GO:0046857"}


id: PBO:0003252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-pipecolate oxidase","termid":"PBO:0003252"}


id: PBO:0040642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic leucine zipper ATF-like transcription factor 3","termid":"PBO:0040642"}


id: PBO:0065454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit ubiquitin receptor, non-ATPase 2","termid":"PBO:0065454"}


id: GO:0043988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by the addition of an phosphate group to a serine residue at position 28 of the histone.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-S28 phosphorylation (obsolete GO:0043988)","synonyms":[{"name":"histone H3 phosphorylation at S28","type":"exact"},{"name":"histone H3S28 phosphorylation","type":"exact"}],"termid":"GO:0043988"}


id: PBO:0043896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine rich protein 1 pseudogene 3","termid":"PBO:0043896"}


id: PBO:0000221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P-type ATPase (predicted)","termid":"PBO:0000221"}


id: PR:Q9UUB5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mis13 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UUB5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein mis13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC409.09c","synonyms":[{"name":"NMS complex subunit mis13 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-mis13","type":"exact"}],"termid":"PR:Q9UUB5"}


id: GO:0003416
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The increase in size or mass of an endochondral bone that contributes to the shaping of the bone.","definition_xrefs":["GOC:tb","GOC:ascb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone growth","termid":"GO:0098868"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endochondral bone growth","termid":"GO:0003416"}


id: GO:1900372
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of purine nucleotide biosynthetic processes.","definition_xrefs":["GOC:TermGenie","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of nucleotide biosynthetic process","termid":"GO:0030809"},{"relation_name":"is_a","term_name":"regulation of purine nucleotide biosynthetic process","termid":"GO:1900371"},{"relation_name":"is_a","term_name":"negative regulation of purine nucleotide metabolic process","termid":"GO:1900543"},{"relation_name":"negatively_regulates","term_name":"purine nucleotide biosynthetic process","termid":"GO:0006164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"negative regulation of purine nucleotide biosynthetic process","synonyms":[{"name":"down regulation of purine nucleotide anabolism","type":"exact"},{"name":"down regulation of purine nucleotide biosynthesis","type":"exact"},{"name":"down regulation of purine nucleotide biosynthetic process","type":"exact"},{"name":"down regulation of purine nucleotide formation","type":"exact"},{"name":"down regulation of purine nucleotide synthesis","type":"exact"},{"name":"down-regulation of purine nucleotide anabolism","type":"exact"},{"name":"down-regulation of purine nucleotide biosynthesis","type":"exact"},{"name":"down-regulation of purine nucleotide biosynthetic process","type":"exact"},{"name":"down-regulation of purine nucleotide formation","type":"exact"},{"name":"down-regulation of purine nucleotide synthesis","type":"exact"},{"name":"downregulation of purine nucleotide anabolism","type":"exact"},{"name":"downregulation of purine nucleotide biosynthesis","type":"exact"},{"name":"downregulation of purine nucleotide biosynthetic process","type":"exact"},{"name":"downregulation of purine nucleotide formation","type":"exact"},{"name":"downregulation of purine nucleotide synthesis","type":"exact"},{"name":"inhibition of purine nucleotide anabolism","type":"exact"},{"name":"inhibition of purine nucleotide biosynthesis","type":"exact"},{"name":"inhibition of purine nucleotide biosynthetic process","type":"narrow"},{"name":"inhibition of purine nucleotide formation","type":"exact"},{"name":"inhibition of purine nucleotide synthesis","type":"exact"},{"name":"negative regulation of purine nucleotide anabolism","type":"exact"},{"name":"negative regulation of purine nucleotide biosynthesis","type":"exact"},{"name":"negative regulation of purine nucleotide formation","type":"exact"},{"name":"negative regulation of purine nucleotide synthesis","type":"exact"}],"termid":"GO:1900372"}


id: GO:0090237
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of arachidonic acid secretion, the controlled release of arachidonic acid from a cell or a tissue.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of icosanoid secretion","termid":"GO:0032303"},{"relation_name":"regulates","term_name":"arachidonic acid secretion","termid":"GO:0050482"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of arachidonic acid secretion","termid":"GO:0090237"}


id: PBO:0064348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plexin B2","termid":"PBO:0064348"}


id: PBO:0031581
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_population_growth_rate_on_glucose_carbon_source","termid":"PBO:0031581"}


id: FYPO:0001288
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a phospholipid measured in a cell is higher than normal. A phospholipid is any lipid containing phosphoric acid as a mono- or di-ester.","definition_xrefs":["CHEBI:16247","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered phospholipid level","termid":"FYPO:0001287"},{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased phospholipid level","synonyms":[{"name":"increased cellular phospholipid level","type":"exact"},{"name":"increased phospholipid accumulation","type":"related"},{"name":"increased phospholipid level during mitotic cell cycle","type":"related"},{"name":"increased phospholipid level during vegetative growth","type":"exact"}],"termid":"FYPO:0001288"}


id: FYPO:0001746
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of biotin into the cell is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal biotin import","termid":"FYPO:0001744"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abolished biotin import","synonyms":[{"name":"abolished biotin import across plasma membrane","type":"exact"},{"name":"abolished biotin import during mitotic cell cycle","type":"related"},{"name":"abolished biotin import during vegetative growth","type":"exact"},{"name":"abolished biotin import into cell","type":"exact"},{"name":"abolished biotin uptake","type":"exact"},{"name":"absent biotin import","type":"exact"},{"name":"biotin import abolished","type":"exact"}],"termid":"FYPO:0001746"}


id: GO:0071539
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained at, the centrosome.","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to microtubule organizing center","termid":"GO:1905508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to centrosome","synonyms":[{"name":"protein localisation to centrosome","type":"exact"}],"termid":"GO:0071539"}


id: PBO:0067804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 106","termid":"PBO:0067804"}


id: PBO:0052455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLF transcription factor 6","termid":"PBO:0052455"}


id: PBO:0063701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PGLS divergent transcript","termid":"PBO:0063701"}


id: FYPO:0001970
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of 1,3-beta-D-glucan synthase activity is increased when cells are grown in medium containing aculeacin A.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased 1,3-beta-D-glucan synthase activity","termid":"FYPO:0001968"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0000707","FYPO:0000661","FYPO:0001985"],"is_obsolete":false,"name":"increased 1,3-beta-D-glucan synthase activity during growth on aculeacin A","termid":"FYPO:0001970"}


id: GO:0100039
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates pyrimidine nucleotide biosynthetic process.","definition_xrefs":["GOC:cjm","GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of pyrimidine nucleotide biosynthetic process by transcription from RNA polymerase II promoter (obsolete GO:0100039)","termid":"GO:0100039"}


id: PR:000027499
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A p38-like stress-activated mitogen-activated protein kinase that is a translation product of the yeast HOG1 gene or a 1:1 ortholog thereof.","definition_xrefs":["PMID:10207620","PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase HOG1","pombase_gene_id":"SPAC24B11.06c","synonyms":[{"name":"HOG1","type":"exact"},{"name":"MAP kinase spc1","type":"exact"},{"name":"STY1","type":"related"}],"termid":"PR:000027499"}


id: FYPO:0004772
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-histidine measured in the vacuole is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cellular histidine level","termid":"FYPO:0001567"},{"relation_name":"is_a","term_name":"increased level of substance in vacuole","termid":"FYPO:0001730"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased vacuolar histidine level","synonyms":[{"name":"increased level of histidine in vacuole","type":"exact"},{"name":"increased vacuolar L-histidine level","type":"exact"},{"name":"increased vacuolar histidine level during mitotic cell cycle","type":"related"},{"name":"increased vacuolar histidine level during vegetative growth","type":"exact"}],"termid":"FYPO:0004772"}


id: GO:0009600
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a stimulus from a nematode is received and converted into a molecular signal.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of other organism","termid":"GO:0098543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of nematode","synonyms":[{"name":"perception of nematode","type":"related"}],"termid":"GO:0009600"}


id: GO:0043939
data:
  {"annotated_genes":["SJAG_04140"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107265],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0075297"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of sporulation, the process whose specific outcome is the progression of a spore over time, from its initiation to the mature structure.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sporulation","termid":"GO:0043937"},{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"negatively_regulates","term_name":"sporulation","termid":"GO:0043934"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04140":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of sporulation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0043939","terms_by_termid":{"GO:0075297":null}}


id: PBO:0061693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin 210 pseudogene 1","termid":"PBO:0061693"}


id: PBO:0088949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein Fyv7","termid":"PBO:0088949"}


id: GO:0061716
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a processed miRNA from the nucleus to the cytoplasm.","definition_xrefs":["PMID:21554756","PMID:15738428","GOC:rph","GOC:BHF_miRNA","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA export from nucleus","termid":"GO:0006405"},{"relation_name":"is_a","term_name":"miRNA transport","termid":"GO:1990428"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0006913","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"miRNA export from nucleus","termid":"GO:0061716"}


id: PBO:0051010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insulin like growth factor 1","termid":"PBO:0051010"}


id: PBO:0074785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 6","termid":"PBO:0074785"}


id: FYPO:0003677
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell forms one or more branches near a septum, is elongated, has more than one septum, and is curved along the long axis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branched, elongated, multiseptate cell","termid":"FYPO:0000134"},{"relation_name":"is_a","term_name":"curved elongated vegetative cell","termid":"FYPO:0005103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000032","FYPO:0000631","FYPO:0000002","FYPO:0000005"],"is_obsolete":false,"name":"branched, curved, elongated, multiseptate vegetative cell","synonyms":[{"name":"branched, curved, elongated, multiseptate cell during vegetative growth","type":"exact"},{"name":"branched, curved, elongated, multiseptate vegetative cell during mitotic cell cycle","type":"related"},{"name":"branched, curved, long, multiseptate cell","type":"exact"}],"termid":"FYPO:0003677"}


id: PBO:0053796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1050","termid":"PBO:0053796"}


id: PBO:0072668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"receptor transporter protein 1","termid":"PBO:0072668"}


id: GO:0006047
data:
  {"annotated_genes":["SJAG_00978","SJAG_01443","SJAG_04728","SJAG_03723","SJAG_00519"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98870,84346,84685,98769,57742],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006048"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino sugar metabolic process","termid":"GO:0006040"},{"relation_name":"is_a","term_name":"phosphorus metabolic process","termid":"GO:0006793"},{"relation_name":"is_a","term_name":"nucleotide-sugar metabolic process","termid":"GO:0009225"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00519":null,"SJAG_00978":null,"SJAG_01443":null,"SJAG_03723":null,"SJAG_04728":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"UDP-N-acetylglucosamine metabolic process","references_by_uniquename":{"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"UDP-N-acetylglucosamine metabolism","type":"exact"}],"termid":"GO:0006047","terms_by_termid":{"GO:0006048":null}}


id: GO:0140630
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 geranylgeranyl diphosphate -> all-trans-phytoene + 2 diphosphate.","definition_xrefs":["PMID:7896759","PMID:12641468"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"all-trans-phytoene synthase activity","synonyms":[{"name":"phytoene synthase activity","type":"broad"}],"termid":"GO:0140630"}


id: PBO:0050547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HPS5 biogenesis of lysosomal organelles complex 2 subunit 2","termid":"PBO:0050547"}


id: PBO:0086815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; YLR156W, YLR159W, and YLR161W are three identical open reading frames in S288C encoded near the ribosomal DNA region of chromosome 12; YLR159W has a paralog, YLR156W, that arose from a segmental duplication","termid":"PBO:0086815"}


id: GO:0007101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Centrosome duplication and separation in the context of a meiotic cell cycle in a male organism.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete male meiosis centrosome cycle (obsolete GO:0007101)","synonyms":[{"name":"centrosome cycle involved in male meiotic cell cycle","type":"exact"}],"termid":"GO:0007101"}


id: PBO:0005276
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.2.1.2","termid":"PBO:0005276"}


id: GO:0051963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of synapse assembly, the aggregation, arrangement and bonding together of a set of components to form a synapse.","definition_xrefs":["GOC:pr","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of synapse organization","termid":"GO:0050807"},{"relation_name":"is_a","term_name":"regulation of cell junction assembly","termid":"GO:1901888"},{"relation_name":"regulates","term_name":"synapse assembly","termid":"GO:0007416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"regulation of synapse assembly","synonyms":[{"name":"regulation of synapse biogenesis","type":"exact"},{"name":"regulation of synaptogenesis","type":"exact"}],"termid":"GO:0051963"}


id: PBO:0067357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 455, pseudogene","termid":"PBO:0067357"}


id: FYPO:0007600
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitochondrial outer membrane is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to mitochondrion","termid":"FYPO:0004336"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to mitochondrial outer membrane","synonyms":[{"name":"decreased protein localisation to mitochondrial outer membrane","type":"exact"},{"name":"decreased protein localization to mitochondrial outer membrane during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to mitochondrial outer membrane during vegetative growth","type":"exact"},{"name":"decreased protein localization to mitochondrion outer membrane","type":"exact"},{"name":"reduced protein localization to mitochondrial outer membrane","type":"exact"}],"termid":"FYPO:0007600"}


id: GO:0052876
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2O + methylamine + 2 oxidized [amicyanin] = formaldehyde + 2 H+ + NH4+ + 2 reduced [amicyanin].","definition_xrefs":["RHEA:30207"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH2 group of donors, with a copper protein as acceptor","termid":"GO:0052877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"methylamine dehydrogenase (amicyanin) activity","secondary_identifiers":["KEGG_REACTION:R00606","UM-BBD_reactionID:r0075","EC:1.4.9.1"],"synonyms":[{"name":"MADH activity","type":"broad"},{"name":"amine dehydrogenase","type":"broad"},{"name":"methylamine dehydrogenase activity","type":"exact"},{"name":"methylamine:amicyanin oxidoreductase (deaminating) activity","type":"exact"},{"name":"primary-amine dehydrogenase","type":"broad"}],"termid":"GO:0052876"}


id: PBO:0040626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BANF1 pseudogene 5","termid":"PBO:0040626"}


id: PBO:0068156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 463","termid":"PBO:0068156"}


id: GO:0043460
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a long or persistent exposure to a lithium ion stimulus.","definition_xrefs":["PMID:10208444"],"gene_count":0,"genotype_count":0,"name":"obsolete response to long exposure to lithium ion (obsolete GO:0043460)","synonyms":[{"name":"response to long exposure to lithium ion","type":"exact"}],"termid":"GO:0043460"}


id: PBO:0039976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 4D","termid":"PBO:0039976"}


id: FYPO:0006848
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the total amount of RNA measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah","PomBase:jh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased total RNA level during vegetative growth","synonyms":[{"name":"decreased total RNA accumulation during vegetative growth","type":"related"},{"name":"decreased total RNA content during vegetative growth","type":"exact"},{"name":"decreased total RNA level during mitotic cell cycle","type":"related"},{"name":"reduced total RNA level during vegetative growth","type":"exact"}],"termid":"FYPO:0006848"}


id: PBO:0004625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pescadillo-family BRCT domain protein (predicted)","termid":"PBO:0004625"}


id: PBO:0061265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"notochord homeobox","termid":"PBO:0061265"}


id: PBO:0047014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A17","termid":"PBO:0047014"}


id: PBO:0036016
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-J-shaped_vegetative_cell","termid":"PBO:0036016"}


id: GO:0019910
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A mitochondrial complex of a regulatory and catalytic subunit that catalyzes the dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. An example of this component is found in Mus musculus.","definition_xrefs":["GOC:mtg_sensu","PMID:9395502"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyruvate dehydrogenase (lipoamide) phosphatase complex","termid":"GO:0045253"},{"relation_name":"is_a","term_name":"mitochondrial protein-containing complex","termid":"GO:0098798"},{"relation_name":"part_of","term_name":"mitochondrial matrix","termid":"GO:0005759"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005739"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005739","GO:0005575"],"is_obsolete":false,"name":"mitochondrial pyruvate dehydrogenase (lipoamide) phosphatase complex","termid":"GO:0019910"}


id: PBO:0060307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYL12B pseudogene 2","termid":"PBO:0060307"}


id: GO:0071471
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of non-ionic solutes (e.g. mannitol, sorbitol) in the environment.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to non-ionic osmotic stress","termid":"GO:0010335"},{"relation_name":"is_a","term_name":"cellular response to osmotic stress","termid":"GO:0071470"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to non-ionic osmotic stress","termid":"GO:0071471"}


id: PBO:0073539
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain containing ring finger 1","termid":"PBO:0073539"}


id: GO:0018731
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-oxa-2-oxocycloheptane + H2O = 6-hydroxyhexanoate.","definition_xrefs":["UM-BBD_reactionID:r0167"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016788","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"1-oxa-2-oxocycloheptane lactonase activity","termid":"GO:0018731"}


id: PBO:0087091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L7B; required for processing of 27SA3 pre-rRNA to 27SB pre-rRNA during assembly of large ribosomal subunit; depletion leads to a turnover of pre-rRNA; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2); binds to Domain II of 25S and 5.8S rRNAs; homologous to mammalian ribosomal protein L7 and bacterial L30; RPL7B has a paralog, RPL7A, that arose from the whole genome duplication","termid":"PBO:0087091"}


id: GO:0004053
data:
  {"annotated_genes":["SJAG_03398"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[93453,109277],"is_not":false,"summary":null,"term":"GO:0004053"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-arginine + H2O = L-ornithine + urea.","definition_xrefs":["EC:3.5.3.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03398":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824","GO:0016810"],"is_obsolete":false,"name":"arginase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-452036","RHEA:20569","Reactome:R-HSA-70569","MetaCyc:ARGINASE-RXN"],"synonyms":[{"name":"arginine amidinase activity","type":"related"},{"name":"L-arginase activity","type":"related"},{"name":"L-arginine amidinohydrolase activity","type":"related"},{"name":"arginine transamidinase activity","type":"related"},{"name":"canavanase activity","type":"related"}],"termid":"GO:0004053","terms_by_termid":{"GO:0004053":null}}


id: GO:0009489
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A low molecular weight mononuclear iron protein involved in electron transfer, with an iron tetrahedrally coordinated by the sulfurs of four conserved cysteine residues.","definition_xrefs":["GOC:kd"],"gene_count":0,"genotype_count":0,"name":"obsolete rubredoxin (obsolete GO:0009489)","synonyms":[{"name":"rubredoxin","type":"exact"}],"termid":"GO:0009489"}


id: PBO:0004755
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"equivalent function in S. cerevisiae is performed by STE12, but this is STE-like not HMG","termid":"PBO:0004755"}


id: GO:0120168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a hot stimulus is received and converted into a molecular signal as part of thermoception.","definition_xrefs":["PMID:21335241"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of temperature stimulus involved in thermoception","termid":"GO:0050960"},{"relation_name":"part_of","term_name":"sensory perception of hot stimulus","termid":"GO:0062036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of hot stimulus involved in thermoception","synonyms":[{"name":"sensory detection of heat stimulus during thermoception","type":"exact"},{"name":"sensory detection of hot stimulus during thermoception","type":"exact"},{"name":"sensory transduction of heat stimulus during thermoception","type":"exact"},{"name":"sensory transduction of hot stimulus during thermoception","type":"exact"},{"name":"thermoception, sensory detection of heat stimulus","type":"exact"},{"name":"thermoception, sensory detection of hot stimulus","type":"exact"},{"name":"thermoception, sensory transduction of heat stimulus","type":"exact"},{"name":"thermoception, sensory transduction of hot stimulus","type":"exact"}],"termid":"GO:0120168"}


id: PBO:0049833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"haloacid dehalogenase like hydrolase domain containing 5","termid":"PBO:0049833"}


id: _global:has_dividend_quality
data:
  {"annotation_feature_type":"gene","cv_name":"quality","direct_ancestors":[{"relation_name":"is_a","term_name":"has_ratio_quality","termid":"_global:has_ratio_quality"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_dividend_quality","termid":"_global:has_dividend_quality"}


id: PBO:0003032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine transporter (predicted)","termid":"PBO:0003032"}


id: GO:0007608
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors. This is a neurological process.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory perception of chemical stimulus","termid":"GO:0007606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sensory perception of smell","secondary_identifiers":["Wikipedia:Olfaction"],"synonyms":[{"name":"olfaction","type":"exact"},{"name":"scent perception","type":"exact"},{"name":"sense of smell","type":"exact"},{"name":"smell perception","type":"exact"}],"termid":"GO:0007608"}


id: PBO:0005265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Urb1 (predicted)","termid":"PBO:0005265"}


id: PBO:0042963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 1","termid":"PBO:0042963"}


id: GO:0097411
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals mediated by hypoxia-inducible factor (HIF1) in response to lowered oxygen levels (hypoxia). Under hypoxic conditions, the oxygen-sensitive alpha-subunit of hypoxia-inducible factor (HIF)-1 dimerizes with a HIF1-beta subunit (also called ARNT or aryl-hydrocarbon-receptor nuclear translocator), translocates to the nucleus and activates transcription of genes whose products participate in responding to hypoxia.","definition_xrefs":["GOC:bf","GOC:jc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular signal transduction","termid":"GO:0035556"},{"relation_name":"part_of","term_name":"cellular response to hypoxia","termid":"GO:0071456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"hypoxia-inducible factor-1alpha signaling pathway","synonyms":[{"name":"HIF1alpha pathway","type":"exact"},{"name":"hypoxia-inducible factor signaling","type":"exact"},{"name":"hypoxia-inducible factor-1alpha signalling pathway","type":"exact"}],"termid":"GO:0097411"}


id: GO:0000802
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A structural unit of the synaptonemal complex that spans the regions between the lateral elements and connects them.","definition_xrefs":["GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"synaptonemal complex","termid":"GO:0000795"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005694","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"transverse filament","termid":"GO:0000802"}


id: GO:0046524
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-glucose + D-fructose 6-phosphate = UDP + sucrose 6-phosphate.","definition_xrefs":["EC:2.4.1.14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"sucrose-phosphate synthase activity","secondary_identifiers":["MetaCyc:SUCROSE-PHOSPHATE-SYNTHASE-RXN","RHEA:22172"],"synonyms":[{"name":"SPS","type":"related"},{"name":"UDP-glucose-fructose-phosphate glucosyltransferase activity","type":"related"},{"name":"UDP-glucose:D-fructose-6-phosphate 2-alpha-D-glucosyltransferase activity","type":"related"},{"name":"UDPglucose-fructose-phosphate glucosyltransferase activity","type":"related"},{"name":"UDPglucose:D-fructose-6-phosphate 2-alpha-D-glucosyltransferase activity","type":"related"},{"name":"sucrose 6-phosphate synthase activity","type":"related"},{"name":"sucrose phosphate synthetase activity","type":"related"},{"name":"sucrose phosphate-uridine diphosphate glucosyltransferase activity","type":"related"},{"name":"sucrosephosphate-UDP glucosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucose-fructose phosphate glucosyltransferase activity","type":"related"}],"termid":"GO:0046524"}


id: PBO:0064827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory subunit 8","termid":"PBO:0064827"}


id: GO:0018666
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,4-dichlorophenol + NADPH + H+ + O2 = 3,5-dichlorocatechol + NADP+ + H2O.","definition_xrefs":["EC:1.14.13.20"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"2,4-dichlorophenol 6-monooxygenase activity","secondary_identifiers":["RHEA:20920","UM-BBD_enzymeID:e0152","MetaCyc:24-DICHLOROPHENOL-6-MONOOXYGENASE-RXN"],"synonyms":[{"name":"2,4-dichlorophenol hydroxylase activity","type":"exact"},{"name":"2,4-dichlorophenol monooxygenase activity","type":"related"},{"name":"2,4-dichlorophenol,NADPH:oxygen oxidoreductase (6-hydroxylating)","type":"related"}],"termid":"GO:0018666"}


id: PBO:0026920
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H4-K8_acetylation","termid":"PBO:0026920"}


id: PBO:0088490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3,4-dihydroxy-2-butanone 4-phosphate synthase Rib3","termid":"PBO:0088490"}


id: GO:0103062
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP(4-) + H2O + a cis-keto-C60-meroacyl-[acp] = diphosphoric acid + a cis-keto-meroacyl-adenylate + a holo-[acyl-carrier protein].","definition_xrefs":["GOC:pz","EC:6.2.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"cis-keto-C60-meroacyl-AMP ligase activity","secondary_identifiers":["MetaCyc:RXN1G-4142"],"termid":"GO:0103062"}


id: PBO:0027170
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_microtubule_minus-end","termid":"PBO:0027170"}


id: PBO:0085651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in microtubule-related processes; GFP-fusion protein localizes to the cytoplasm and is induced in response to the DNA-damaging agent MMS; YLR412W is not an essential gene; similar to Arabidopsis SRR1 gene","termid":"PBO:0085651"}


id: GO:0052171
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring when the organism is in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete growth or development during symbiotic interaction (obsolete GO:0052171)","synonyms":[{"name":"growth or development during symbiotic interaction","type":"exact"}],"termid":"GO:0052171"}


id: PBO:0054336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1729","termid":"PBO:0054336"}


id: GO:0031245
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The component of the cell outer membrane consisting of gene products and protein complexes that are loosely bound to periplasmic surface, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:dos","GOC:mtg_sensu","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of cell outer membrane","termid":"GO:0031244"},{"relation_name":"part_of","term_name":"periplasmic side of cell outer membrane","termid":"GO:0031241"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"extrinsic component of periplasmic side of cell outer membrane","synonyms":[{"name":"extrinsic to internal leaflet of cell outer membrane","type":"narrow"},{"name":"extrinsic to internal side of cell outer membrane","type":"exact"},{"name":"extrinsic to internal side of outer membrane","type":"exact"},{"name":"extrinsic to periplasmic side of cell outer membrane","type":"exact"}],"termid":"GO:0031245"}


id: GO:0003355
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed, self-propelled movement of cilia of inner ear epithelial cells, resulting the aggregation of otolith seed particles.","definition_xrefs":["GOC:dph","GOC:krc","PMID:19043402"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cilium movement involved in extracellular fluid movement","termid":"GO:0003351"},{"relation_name":"part_of","term_name":"otolith formation","termid":"GO:0032475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"cilium movement involved in otolith formation","termid":"GO:0003355"}


id: FYPO:0004630
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell is lower than normal during the meiotic cell cycle. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level","termid":"FYPO:0000826"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"decreased RNA level during meiotic cell cycle","synonyms":[{"name":"decreased RNA accumulation during meiotic cell cycle","type":"related"},{"name":"decreased transcript level during meiotic cell cycle","type":"exact"},{"name":"reduced RNA level during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0004630"}


id: GO:0046690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tellurium ion stimulus.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to tellurium ion","synonyms":[{"name":"response to tellurium","type":"exact"},{"name":"tellurium sensitivity/resistance","type":"related"}],"termid":"GO:0046690"}


id: GO:0039616
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=2 symmetry. The T=2 capsid is composed of 12 pentameric dimers.","definition_xrefs":["VZ:838"],"direct_ancestors":[{"relation_name":"is_a","term_name":"icosahedral viral capsid","termid":"GO:0019030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"T=2 icosahedral viral capsid","termid":"GO:0039616"}


id: PR:O42918
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- meu7 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42918"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-amylase 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16A3.13","synonyms":[{"name":"1,4-alpha-D-glucan glucanohydrolase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-meu7","type":"exact"},{"name":"meiotic expression up-regulated protein 7 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O42918"}


id: PATO:0000106
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000106 acid sensitivity (obsolete PATO:0000106)","termid":"PATO:0000106"}


id: GO:0034023
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole = 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate.","definition_xrefs":["EC:5.4.99.18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular transferase activity","termid":"GO:0016866"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"5-(carboxyamino)imidazole ribonucleotide mutase activity","secondary_identifiers":["RHEA:13193","MetaCyc:RXN0-743"],"synonyms":[{"name":"5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole carboxymutase activity","type":"related"},{"name":"N5-CAIR mutase activity","type":"related"},{"name":"N5-carboxyaminoimidazole ribonucleotide mutase activity","type":"related"},{"name":"PurE","type":"related"},{"name":"class I PurE","type":"related"}],"termid":"GO:0034023"}


id: GO:0102901
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + isopimaradienol + NADPH + O2 = isopimaradiene-diol + NADP + H2O.","definition_xrefs":["EC:1.14.13.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"isopimaradienol hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-8536"],"termid":"GO:0102901"}


id: GO:0106077
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of a histone by the addition of an succinyl group.","definition_xrefs":["PMID:29211711"],"gene_count":0,"genotype_count":0,"name":"obsolete histone succinylation (obsolete GO:0106077)","termid":"GO:0106077"}


id: PATO:0000414
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branchiness","termid":"PATO:0002009"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unbranched","termid":"PATO:0000414"}


id: PATO:0002192
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic.","definition_xrefs":["PATOC:JH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aromaticity","termid":"PATO:0002190"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-aromatic","termid":"PATO:0002192"}


id: PBO:0073174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenium binding protein 1","termid":"PBO:0073174"}


id: PBO:0081720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 649","termid":"PBO:0081720"}


id: GO:0061202
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a clathrin-sculpted gamma-aminobutyric acid transport vesicle.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clathrin-coated vesicle membrane","termid":"GO:0030665"},{"relation_name":"part_of","term_name":"clathrin-sculpted gamma-aminobutyric acid transport vesicle","termid":"GO:0061200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane","synonyms":[{"name":"clathrin sculpted GABA transport vesicle membrane","type":"exact"},{"name":"clathrin sculpted gamma-aminobutyric acid transport vesicle membrane","type":"exact"}],"termid":"GO:0061202"}


id: PBO:0109602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A3","termid":"PBO:0109602"}


id: PBO:0029661
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_deadenylation-independent_decapping_of_nuclear-transcribed_mRNA","termid":"PBO:0029661"}


id: GO:0150078
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of neuroinflammatory response.","definition_xrefs":["GOC:bc","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of inflammatory response","termid":"GO:0050729"},{"relation_name":"is_a","term_name":"regulation of neuroinflammatory response","termid":"GO:0150077"},{"relation_name":"positively_regulates","term_name":"neuroinflammatory response","termid":"GO:0150076"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of neuroinflammatory response","termid":"GO:0150078"}


id: GO:0004698
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Calcium-dependent catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diacylglycerol-dependent serine/threonine kinase activity","termid":"GO:0004697"},{"relation_name":"is_a","term_name":"calcium-dependent protein serine/threonine kinase activity","termid":"GO:0009931"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016301","GO:0003674","GO:0003824","GO:0004672","GO:0140096","GO:0016740"],"is_obsolete":false,"name":"calcium,diacylglycerol-dependent serine/threonine kinase activity","secondary_identifiers":["Reactome:R-HSA-9005561","Reactome:R-HSA-114684","Reactome:R-HSA-421007","Reactome:R-HSA-416639","Reactome:R-HSA-114683","Reactome:R-HSA-8986937"],"synonyms":[{"name":"calcium-dependent PKC activity","type":"exact"},{"name":"conventional protein kinase C activity","type":"exact"}],"termid":"GO:0004698"}


id: PBO:0066227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBM33 divergent transcript","termid":"PBO:0066227"}


id: GO:0007100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Separation of duplicated centrosome components at the beginning of mitosis. The centriole pair within each centrosome becomes part of a separate microtubule organizing center that nucleates a radial array of microtubules called an aster. The two asters move to opposite sides of the nucleus to form the two poles of the mitotic spindle.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"centrosome separation","termid":"GO:0051299"},{"relation_name":"is_a","term_name":"mitotic cell cycle process","termid":"GO:1903047"},{"relation_name":"part_of","term_name":"mitotic nuclear division","termid":"GO:0140014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0000226","GO:0007010","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"mitotic centrosome separation","termid":"GO:0007100"}


id: PBO:0091223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-coding RNA, poly(A)-bearing","termid":"PBO:0091223"}


id: PBO:0043546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COL1A2 antisense RNA 1","termid":"PBO:0043546"}


id: PBO:0079348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tweety family member 1","termid":"PBO:0079348"}


id: PBO:0077557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM263 divergent transcript","termid":"PBO:0077557"}


id: FYPO:0006329
data:
  {"alleles_by_uniquename":{"SJAG_01834:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01834","name":"pom152delta","uniquename":"SJAG_01834:allele-1"},"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03449:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"man1DHEH","gene_uniquename":"SJAG_03449","name":"Man1DHEH","uniquename":"SJAG_03449:allele-2"},"SJAG_03449:allele-3":{"allele_type":"amino_acid_insertion_and_deletion","description":"man1-1-488","gene_uniquename":"SJAG_03449","name":"man1-1-488","uniquename":"SJAG_03449:allele-3"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115240],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007770"},{"annotations":[115533,115534,115536,115532],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0004890"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which organelle localization, i.e. any process in which an organelle is transported to, and/or maintained in, a specific location, is abnormal.","definition_xrefs":["PomBase:mah","GO:0051640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization phenotype during vegetative growth","termid":"FYPO:0001337"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01834":null,"SJAG_03449":null,"SJAG_03892":null},"genotype_count":5,"genotypes_by_uniquename":{"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Man1DHEH(man1DHEH)","display_uniquename":"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-2","expression":"Not assayed or wild type"}]}]},"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type":{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]},"man1delta":{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]},"pom152delta":{"display_name":"pom152delta","display_uniquename":"pom152delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01834:allele-1","expression":"Null"}]}]},"vps4delta":{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abnormal organelle localization","references_by_uniquename":{"PMID:24184107":null,"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_03892","SJAG_01834","SJAG_03449"],"single_locus_genotype_uniquenames":["pom152delta","Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","vps4delta","man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","man1delta"],"synonyms":[{"name":"abnormal organelle localisation","type":"exact"},{"name":"abnormal organelle localization during mitotic cell cycle","type":"related"},{"name":"abnormal organelle localization during vegetative growth","type":"exact"}],"termid":"FYPO:0006329","terms_by_termid":{"FYPO:0004890":null,"FYPO:0007770":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: GO:0034916
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-methylhexanoyl-CoA = 2-methylhex-2-enoyl-CoA + 2 H+ + e-.","definition_xrefs":["UM-BBD_reactionID:r0928"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors","termid":"GO:0016627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"2-methylhexanoyl-CoA dehydrogenase activity","secondary_identifiers":["EC:1.3.99.-"],"termid":"GO:0034916"}


id: PBO:0069625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 902, pseudogene","termid":"PBO:0069625"}


id: PBO:0045792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER degradation enhancing alpha-mannosidase like protein 2","termid":"PBO:0045792"}


id: GO:0097456
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Portion of myelin-forming Schwann cell consisting of terminal cytoplasmic extensions adhered to the axon at the beginning and end of the myelin sheath.","definition_xrefs":["NIF_Subcellular:sao924713546"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell projection","termid":"GO:0097386"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"terminal loop","synonyms":[{"name":"terminal loop of Schwann cell","type":"exact"}],"termid":"GO:0097456"}


id: PBO:0088049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin hydrolase; deubiquitinates intralumenal vesicle (ILVs) cargo proteins; required for recycling ubiquitin from proteasome-bound ubiquitinated intermediates, acts at the late endosome/prevacuolar compartment to recover ubiquitin from ubiquitinated membrane proteins destined for the vacuole; DOA4 has a paralog, UBP5, that arose from the whole genome duplication","termid":"PBO:0088049"}


id: PBO:0039028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with GTPase domain, ankyrin repeat and PH domain 4","termid":"PBO:0039028"}


id: PR:O60078
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tyr1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60078"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prephenate dehydrogenase [NADP(+)] (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1494.04c","synonyms":[{"name":"PRDH (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-tyr1","type":"exact"}],"termid":"PR:O60078"}


id: GO:1990634
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to protein phosphatase 5.","definition_xrefs":["PMID:8943293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein phosphatase binding","termid":"GO:0019903"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"protein phosphatase 5 binding","synonyms":[{"name":"protein phosphatase T binding","type":"exact"}],"termid":"GO:1990634"}


id: GO:0004601
data:
  {"annotated_genes":["SJAG_05181","SJAG_00141","SJAG_03166","SJAG_01216","SJAG_01292","SJAG_02515","SJAG_04823","SJAG_02630","SJAG_00489","SJAG_01199","SJAG_04632"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[102859,112793,113418],"is_not":false,"summary":null,"term":"GO:0004601"},{"annotations":[114313],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004096"},{"annotations":[85539,95361,94053],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004602"},{"annotations":[101367,113419],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051920"},{"annotations":[104903,101104,91301,69273,113421],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008379"},{"annotations":[113422,104904],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140824"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a donor + a peroxide = an oxidized donor + 2 H2O.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antioxidant activity","termid":"GO:0016209"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on peroxide as acceptor","termid":"GO:0016684"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00141":null,"SJAG_00489":null,"SJAG_01199":null,"SJAG_01216":null,"SJAG_01292":null,"SJAG_02515":null,"SJAG_02630":null,"SJAG_03166":null,"SJAG_04632":null,"SJAG_04823":null,"SJAG_05181":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"peroxidase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-209973","Reactome:R-HSA-2309773","Reactome:R-HSA-2559639","Reactome:R-HSA-5631885","Reactome:R-HSA-8933635","Reactome:R-HSA-209815","GO:0016686","Reactome:R-HSA-6789031","Reactome:R-HSA-6789126","Reactome:R-HSA-350901","GO:0016693","Reactome:R-HSA-140359","Reactome:R-HSA-8855490","KEGG_REACTION:R03532","GO:0016687","EC:1.11.1.-","GO:0016685","Reactome:R-HSA-209840","Reactome:R-HSA-209925","Reactome:R-HSA-3341296","Wikipedia:Peroxidase","Reactome:R-HSA-1222346"],"synonyms":[{"name":"MPO","type":"related"},{"name":"bacterial catalase-peroxidase activity","type":"narrow"},{"name":"donor:hydrogen-peroxide oxidoreductase activity","type":"related"},{"name":"eosinophil peroxidase activity","type":"narrow"},{"name":"extensin peroxidase","type":"narrow"},{"name":"guaiacol peroxidase","type":"narrow"},{"name":"heme peroxidase","type":"narrow"},{"name":"horseradish peroxidase (HRP)","type":"narrow"},{"name":"japanese radish peroxidase","type":"narrow"},{"name":"lactoperoxidase activity","type":"narrow"},{"name":"myeloperoxidase activity","type":"narrow"},{"name":"oxyperoxidase activity","type":"related"},{"name":"peroxidase reaction","type":"exact"},{"name":"protoheme peroxidase","type":"narrow"},{"name":"pyrocatechol peroxidase","type":"narrow"},{"name":"scopoletin peroxidase","type":"narrow"},{"name":"secretory plant peroxidase activity","type":"narrow"},{"name":"thiocyanate peroxidase","type":"narrow"},{"name":"verdoperoxidase","type":"narrow"}],"termid":"GO:0004601","terms_by_termid":{"GO:0004096":null,"GO:0004601":null,"GO:0004602":null,"GO:0008379":null,"GO:0051920":null,"GO:0140824":null}}


id: PBO:0068450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 24, pseudogene","termid":"PBO:0068450"}


id: PBO:0064948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PML-RARA regulated adaptor molecule 1","termid":"PBO:0064948"}


id: PBO:0042987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"checkpoint kinase 2","termid":"PBO:0042987"}


