# terms

id: PR:P50527
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- shk1 gene.","definition_xrefs":["UniProtKB:P50527","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase shk1/pak1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1604.14c","synonyms":[{"name":"Spom972h-shk1","type":"exact"}],"termid":"PR:P50527"}


id: GO:0044794
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a host organism activates or increases the frequency, rate or extent of the release of a process being mediated by a virus with which it is infected.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation by host of viral process","termid":"GO:0044788"},{"relation_name":"positively_regulates","term_name":"viral process","termid":"GO:0016032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation by host of viral process","termid":"GO:0044794"}


id: PBO:0074397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small integral membrane protein 7","termid":"PBO:0074397"}


id: GO:0001506
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of neurotransmitters and the storage of the synthesized molecules.","definition_xrefs":["GOC:go_curators","ISBN:0123668387"],"gene_count":0,"genotype_count":0,"name":"obsolete neurotransmitter biosynthetic process and storage (obsolete GO:0001506)","synonyms":[{"name":"neurotransmitter anabolism and storage","type":"exact"},{"name":"neurotransmitter biosynthetic process and storage","type":"exact"},{"name":"neurotransmitter formation and storage","type":"exact"},{"name":"neurotransmitter synthesis and storage","type":"exact"}],"termid":"GO:0001506"}


id: PBO:0027842
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_phosphorylation_during_mitotic_G2_phase_during_cellular_response_to_ionizing_radiation","termid":"PBO:0027842"}


id: GO:0016624
data:
  {"annotated_genes":["SJAG_02006","SJAG_03064","SJAG_03290","SJAG_06382","SJAG_02464"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[102775,106175,83550],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004591"},{"annotations":[91078,104639],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004739"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors","termid":"GO:0016903"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02006":null,"SJAG_02464":null,"SJAG_03064":null,"SJAG_03290":null,"SJAG_06382":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:1.2.4.-"],"synonyms":[{"name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulphide as acceptor","type":"exact"}],"termid":"GO:0016624","terms_by_termid":{"GO:0004591":null,"GO:0004739":null}}


id: PBO:0053293
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIMK2 pseudogene 1","termid":"PBO:0053293"}


id: GO:0047515
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: [oligomeric (1->3)-beta-D-glucosyl](n) + phosphate = [(1->3)-beta-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate.","definition_xrefs":["EC:2.4.1.30","MetaCyc:13-BETA-OLIGOGLUCAN-PHOSPHORYLASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"1,3-beta-oligoglucan phosphorylase activity","secondary_identifiers":["RHEA:16041"],"synonyms":[{"name":"1,3-beta-D-oligoglucan:phosphate alpha-D-glucosyltransferase activity","type":"related"},{"name":"beta-1,3-oligoglucan phosphorylase activity","type":"related"},{"name":"beta-1,3-oligoglucan:orthophosphate glucosyltransferase II activity","type":"related"}],"termid":"GO:0047515"}


id: PBO:0089108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces japonicus specific protein some similarity to proteases","termid":"PBO:0089108"}


id: PBO:0039421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"angiopoietin like 1","termid":"PBO:0039421"}


id: PBO:0085230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Part of the heteromeric co-chaperone GimC/prefoldin complex; complex promotes efficient protein folding","termid":"PBO:0085230"}


id: GO:1904001
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A positive regulation of transcription from RNA polymerase II promoter that results in positive regulation of pyrimidine-containing compound salvage.","definition_xrefs":["GOC:al","GOC:TermGenie","PMID:23695302","GO_REF:0000063"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter (obsolete GO:1904001)","synonyms":[{"name":"activation of pyrimidine salvage by positive regulation of transcription from RNA polymerase II promoter","type":"related"},{"name":"activation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter","type":"narrow"},{"name":"positive regulation of pyrimidine salvage by positive regulation of transcription from RNA polymerase II promoter","type":"related"},{"name":"up regulation of pyrimidine salvage by positive regulation of transcription from RNA polymerase II promoter","type":"related"},{"name":"up regulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up-regulation of pyrimidine salvage by positive regulation of transcription from RNA polymerase II promoter","type":"related"},{"name":"up-regulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"upregulation of pyrimidine salvage by positive regulation of transcription from RNA polymerase II promoter","type":"related"},{"name":"upregulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:1904001"}


id: GO:0061863
data:
  {"annotated_genes":["SJAG_02624","SJAG_03540"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[114153,114672],"is_not":false,"summary":null,"term":"GO:0061863"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of tubulin dimers to the plus end of a microtubule. The reaction is reversible depending on the availability of dimers.","definition_xrefs":["PMID:27872152"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity","termid":"GO:0016740"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02624":null,"SJAG_03540":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0140096","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"microtubule plus end polymerase","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0061863","terms_by_termid":{"GO:0061863":null}}


id: PBO:0078405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gly (anticodon CCC) 1-1","termid":"PBO:0078405"}


id: GO:0046042
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ITP, inosine triphosphate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide biosynthetic process","termid":"GO:0009152"},{"relation_name":"is_a","term_name":"purine ribonucleoside triphosphate biosynthetic process","termid":"GO:0009206"},{"relation_name":"is_a","term_name":"ITP metabolic process","termid":"GO:0046041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"ITP biosynthetic process","synonyms":[{"name":"ITP anabolism","type":"exact"},{"name":"ITP biosynthesis","type":"exact"},{"name":"ITP formation","type":"exact"},{"name":"ITP synthesis","type":"exact"}],"termid":"GO:0046042"}


id: PBO:0066984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 287","termid":"PBO:0066984"}


id: GO:1904365
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of chemokinesis.","definition_xrefs":["GO_REF:0000058","PMID:8679543","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to external stimulus","termid":"GO:0032101"},{"relation_name":"regulates","term_name":"chemokinesis","termid":"GO:0042466"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of chemokinesis","termid":"GO:1904365"}


id: PBO:0049105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPR160 pseudogene 2","termid":"PBO:0049105"}


id: PR:Q09840
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- aah2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09840"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-amylase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23D3.14c","synonyms":[{"name":"1,4-alpha-D-glucan glucanohydrolase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-aah2","type":"exact"}],"termid":"PR:Q09840"}


id: GO:0060671
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a trophoblast cell acquires specialized features of an epithelial cell of the placental labyrinthine layer.","definition_xrefs":["GOC:dph","PMID:16916377"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation","termid":"GO:0030855"},{"relation_name":"is_a","term_name":"cell differentiation involved in embryonic placenta development","termid":"GO:0060706"},{"relation_name":"part_of","term_name":"labyrinthine layer development","termid":"GO:0060711"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial cell differentiation involved in embryonic placenta development","termid":"GO:0060671"}


id: PBO:0108578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome large subunit export factor","termid":"PBO:0108578"}


id: PBO:0004020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MADS-box transcription factor Mbx1","termid":"PBO:0004020"}


id: GO:0071479
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to ionizing radiation","termid":"GO:0010212"},{"relation_name":"is_a","term_name":"cellular response to radiation","termid":"GO:0071478"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to ionizing radiation","synonyms":[{"name":"cellular response to ionising radiation","type":"exact"},{"name":"cellular response to ionizing radiation stimulus","type":"exact"}],"termid":"GO:0071479"}


id: GO:0008051
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A complex that possesses farnesyl-diphosphate farnesyl transferase activity.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete farnesyl-diphosphate farnesyl transferase complex (obsolete GO:0008051)","synonyms":[{"name":"farnesyl-diphosphate farnesyl transferase complex","type":"exact"}],"termid":"GO:0008051"}


id: PBO:0041677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell adhesion molecule 3","termid":"PBO:0041677"}


id: GO:0019349
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ribitol, a pentitol derived formally by reduction of the -CHO group of either D- or L-ribose. It occurs free in some plants and is a component of riboflavin.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentitol metabolic process","termid":"GO:0019519"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"ribitol metabolic process","synonyms":[{"name":"ribitol metabolism","type":"exact"}],"termid":"GO:0019349"}


id: PBO:0067102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 144, pseudogene","termid":"PBO:0067102"}


id: GO:0070335
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to aspartate, the alpha-amino-acid anion of 2-aminobutanedioic acid that has formula C4H5NO4.","definition_xrefs":["CHEBI:29995","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid binding","termid":"GO:0016597"},{"relation_name":"is_a","term_name":"carboxylic acid binding","termid":"GO:0031406"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"aspartate binding","synonyms":[{"name":"aspartic acid binding","type":"exact"}],"termid":"GO:0070335"}


id: GO:0010847
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process the modulates the frequency, rate or extent of chromatin assembly. Chromatin assembly is the assembly of DNA, histone proteins, and other associated proteins into chromatin structure, beginning with the formation of the basic unit, the nucleosome, followed by organization of the nucleosomes into higher order structures, ultimately giving rise to a complex organization of specific domains within the nucleus.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of chromatin assembly (obsolete GO:0010847)","termid":"GO:0010847"}


id: PATO:0002236
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Shape quality inhering in a bearer by virtue of the bearer's being shaped like a wing.","direct_ancestors":[{"relation_name":"is_a","term_name":"2-D shape","termid":"PATO:0002006"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aliform","synonyms":[{"name":"wing-shaped","type":"exact"}],"termid":"PATO:0002236"}


id: PBO:0002662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol 3-kinase Pik3","termid":"PBO:0002662"}


id: GO:1902261
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of delayed rectifier potassium channel activity.","definition_xrefs":["GOC:BHF","PMID:11299204","GOC:TermGenie","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of delayed rectifier potassium channel activity","termid":"GO:1902259"},{"relation_name":"is_a","term_name":"positive regulation of voltage-gated potassium channel activity","termid":"GO:1903818"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"positive regulation of delayed rectifier potassium channel activity","synonyms":[{"name":"activation of delayed rectifier potassium channel activity","type":"narrow"},{"name":"up regulation of delayed rectifier potassium channel activity","type":"exact"},{"name":"up-regulation of delayed rectifier potassium channel activity","type":"exact"},{"name":"upregulation of delayed rectifier potassium channel activity","type":"exact"}],"termid":"GO:1902261"}


id: PBO:0045214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ heat shock protein family (Hsp40) member C7","termid":"PBO:0045214"}


id: PBO:0045531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene","termid":"PBO:0045531"}


id: GO:0048860
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process resulting in the physical partitioning and separation of a glioblast into daughter cells.","definition_xrefs":["GOC:devbiol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell division","termid":"GO:0051301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glioblast division","termid":"GO:0048860"}


id: GO:0030432
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A wavelike sequence of involuntary muscular contraction and relaxation that passes along a tubelike structure, such as the intestine, impelling the contents onwards.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phasic smooth muscle contraction","termid":"GO:0014821"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peristalsis","secondary_identifiers":["Wikipedia:Peristalsis"],"termid":"GO:0030432"}


id: GO:0016832
data:
  {"annotated_genes":["SJAG_01310","SJAG_01455","SJAG_02230","SJAG_00815","SJAG_00706","SJAG_04242","SJAG_03373","SJAG_02450"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[103195],"is_not":false,"summary":null,"term":"GO:0016832"},{"annotations":[107875],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106359"},{"annotations":[100977],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004150"},{"annotations":[96107,110639],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097023"},{"annotations":[101857,101858],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004332"},{"annotations":[99559],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033984"},{"annotations":[90277],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008732"}]},"cv_name":"molecular_function","definition":"Catalysis of the cleavage of a C-C bond in a molecule containing a hydroxyl group and a carbonyl group to form two smaller molecules, each being an aldehyde or a ketone.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-carbon lyase activity","termid":"GO:0016830"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00706":null,"SJAG_00815":null,"SJAG_01310":null,"SJAG_01455":null,"SJAG_02230":null,"SJAG_02450":null,"SJAG_03373":null,"SJAG_04242":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"aldehyde-lyase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-200735","Reactome:R-HSA-200651","GO:0016228","EC:4.1.2.-","Reactome:R-HSA-71249"],"synonyms":[{"name":"aldolase activity","type":"broad"}],"termid":"GO:0016832","terms_by_termid":{"GO:0004150":null,"GO:0004332":null,"GO:0008732":null,"GO:0016832":null,"GO:0033984":null,"GO:0097023":null,"GO:0106359":null}}


id: PATO:0000784
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000784 excretory function value (obsolete PATO:0000784)","termid":"PATO:0000784"}


id: FYPO:0008209
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 14 of histone H3 is normal at the  silent mating-type cassette (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone H3-K14 acetylation during vegetative growth","termid":"FYPO:0003224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal histone H3-K14 acetylation at silent mating-type cassette during vegetative growth","termid":"FYPO:0008209"}


id: PBO:0045778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epithelial cell transforming 2","termid":"PBO:0045778"}


id: GO:0070259
data:
  {"annotated_genes":["SJAG_04418"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[114937],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0017005"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of phosphotyrosyl groups formed as covalent intermediates (in DNA backbone breakage) between a DNA topoisomerase and DNA.","definition_xrefs":["GOC:elh","PMID:16751265"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoric diester hydrolase activity","termid":"GO:0008081"},{"relation_name":"is_a","term_name":"catalytic activity, acting on DNA","termid":"GO:0140097"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04418":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016788","GO:0016787","GO:0140097"],"is_obsolete":false,"name":"tyrosyl-DNA phosphodiesterase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0070259","terms_by_termid":{"GO:0017005":null}}


id: PBO:0073836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC7A11 antisense RNA 1","termid":"PBO:0073836"}


id: GO:0008016
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process in which the heart decreases in volume in a characteristic way to propel blood through the body.","definition_xrefs":["GOC:dph","GOC:tb","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of blood circulation","termid":"GO:1903522"},{"relation_name":"regulates","term_name":"heart contraction","termid":"GO:0060047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of heart contraction","synonyms":[{"name":"regulation of cardiac contraction","type":"exact"}],"termid":"GO:0008016"}


id: PBO:0027012
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_regulation_of_catalytic_activity","termid":"PBO:0027012"}


id: PBO:0015227
data:
  {"annotation_feature_type":"gene","cv_name":"subunit_composition","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homomeric(2), RING domain-dependent","termid":"PBO:0015227"}


id: GO:0000901
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Antagonizes the ribosome-mediated translation of mRNA into a polypeptide but does not bind directly to nucleic acid.","definition_xrefs":["GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translation repressor activity","termid":"GO:0030371"},{"relation_name":"is_a","term_name":"translation factor activity, non-nucleic acid binding","termid":"GO:0045183"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0045182"}],"interesting_parent_ids":["GO:0003674","GO:0045182"],"is_obsolete":false,"name":"translation repressor activity, non-nucleic acid binding","termid":"GO:0000901"}


id: GO:1902763
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of embryonic skeletal joint development.","definition_xrefs":["GO_REF:0000058","PMID:16575901","GOC:TermGenie","GOC:mr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of embryonic skeletal joint development","termid":"GO:1902762"},{"relation_name":"negatively_regulates","term_name":"embryonic skeletal joint development","termid":"GO:0072498"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of embryonic skeletal joint development","synonyms":[{"name":"down regulation of embryonic skeletal joint development","type":"exact"},{"name":"down-regulation of embryonic skeletal joint development","type":"exact"},{"name":"downregulation of embryonic skeletal joint development","type":"exact"},{"name":"inhibition of embryonic skeletal joint development","type":"narrow"}],"termid":"GO:1902763"}


id: PBO:0070419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPAP3 divergent transcript","termid":"PBO:0070419"}


id: FYPO:0007049
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular stress response to zinc ions is lower than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during cellular response to zinc ion","termid":"FYPO:0001546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0006551","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased RNA level during stress response to zinc ion","synonyms":[{"name":"decreased RNA accumulation during stress response to zinc ion","type":"related"},{"name":"decreased RNA level during cellular response to excess zinc","type":"exact"},{"name":"decreased RNA level during cellular response to high zinc level","type":"exact"},{"name":"decreased RNA level during cellular response to replete zinc","type":"related"},{"name":"decreased RNA level during cellular stress response to zinc ion","type":"exact"},{"name":"decreased RNA level during response to zinc ion stress","type":"exact"},{"name":"decreased RNA level during response to zinc toxicity","type":"related"},{"name":"decreased RNA level during stress response to zinc","type":"exact"},{"name":"decreased RNA level during stress response to zinc ion during mitotic cell cycle","type":"related"},{"name":"decreased RNA level during stress response to zinc ion during vegetative growth","type":"exact"},{"name":"decreased mRNA level during stress response to zinc ion","type":"narrow"},{"name":"decreased transcript level during stress response to zinc ion","type":"exact"},{"name":"reduced RNA level during stress response to zinc ion","type":"exact"}],"termid":"FYPO:0007049"}


id: PBO:0030310
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_in_germinating_spore","termid":"PBO:0030310"}


id: PBO:0090485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin family protein Mpd1","termid":"PBO:0090485"}


id: GO:0007235
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete activation of Ypd1 protein (obsolete GO:0007235)","synonyms":[{"name":"activation of Ypd1 protein","type":"exact"}],"termid":"GO:0007235"}


id: GO:0008444
data:
  {"annotated_genes":["SJAG_00168"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[109065],"is_not":false,"summary":null,"term":"GO:0008444"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: sn-glycerol 3-phosphate + CDP-diacylglycerol = 3-(3-sn-phosphatidyl)-sn-glycerol 1-phosphate + CMP + H+.","definition_xrefs":["RHEA:12593","EC:2.7.8.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CDP-alcohol phosphatidyltransferase activity","termid":"GO:0017169"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00168":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016780","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PHOSPHAGLYPSYN-RXN","Reactome:R-HSA-1482939","KEGG_REACTION:R01801"],"synonyms":[{"name":"3-phosphatidyl-1'-glycerol-3'-phosphate synthase activity","type":"related"},{"name":"CDP-diacylglycerol:sn-glycerol-3-phosphate 3-phosphatidyltransferase activity","type":"related"},{"name":"CDPdiacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity","type":"related"},{"name":"CDPdiacylglycerol-sn-glycerol-3-phosphate 3-phosphatidyltransferase activity","type":"related"},{"name":"CDPdiacylglycerol:glycerol-3-phosphate phosphatidyltransferase activity","type":"related"},{"name":"CDPdiacylglycerol:sn-glycero-3-phosphate phosphatidyltransferase activity","type":"related"},{"name":"PGP synthase activity","type":"related"},{"name":"cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):sn-glycerol-3-phosphate phosphatidyltransferase activity","type":"related"},{"name":"glycerol 3-phosphate phosphatidyltransferase activity","type":"related"},{"name":"glycerol phosphate phosphatidyltransferase activity","type":"related"},{"name":"glycerophosphate phosphatidyltransferase activity","type":"related"},{"name":"phosphatidylglycerol phosphate synthase activity","type":"related"},{"name":"phosphatidylglycerol phosphate synthetase activity","type":"related"},{"name":"phosphatidylglycerolphosphate synthase activity","type":"related"},{"name":"phosphatidylglycerophosphate synthase activity","type":"related"},{"name":"phosphatidylglycerophosphate synthetase activity","type":"related"},{"name":"sn-glycerol-3-phosphate phosphatidyltransferase activity","type":"related"}],"termid":"GO:0008444","terms_by_termid":{"GO:0008444":null}}


id: PBO:0060990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NHERF family PDZ scaffold protein 1","termid":"PBO:0060990"}


id: FYPO:0000806
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which Golgi organization is abnormal. Golgi organization results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus.","definition_xrefs":["PomBase:mah","GO:0007030"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal endomembrane system organization","termid":"FYPO:0000804"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal Golgi organization","synonyms":[{"name":"abnormal Golgi organisation","type":"exact"},{"name":"abnormal Golgi organization during mitotic cell cycle","type":"related"},{"name":"abnormal Golgi organization during vegetative growth","type":"exact"}],"termid":"FYPO:0000806"}


id: MOD:00961
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively reduces the disulfide bond of cystine to form two cysteine residues.","definition_xrefs":["DeltaMass:333"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"L-cystine (cross-link)","termid":"MOD:00034"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"},{"relation_name":"is_a","term_name":"hydrogenated residue","termid":"MOD:01473"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reduction of disulfide crosslink in cystine to two cysteines","termid":"MOD:00961"}


id: PR:Q9P784
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl401 gene.","definition_xrefs":["UniProtKB:Q9P784","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L4-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1711.06","synonyms":[{"name":"Spom972h-rpl401","type":"exact"}],"termid":"PR:Q9P784"}


id: PBO:0047764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FosB proto-oncogene, AP-1 transcription factor subunit","termid":"PBO:0047764"}


id: GO:0042270
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of protecting a cell from natural killer cell mediated cytotoxicity.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of natural killer cell mediated cytotoxicity","termid":"GO:0045953"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protection from natural killer cell mediated cytotoxicity","synonyms":[{"name":"protection from NK cell mediated cell death","type":"exact"},{"name":"protection from NK cell mediated cell killing","type":"exact"},{"name":"protection from NK cell mediated cytolysis","type":"related"},{"name":"protection from NK cell mediated cytotoxicity","type":"exact"},{"name":"protection from natural killer cell mediated cell death","type":"exact"},{"name":"protection from natural killer cell mediated cell killing","type":"exact"},{"name":"protection from natural killer cell mediated cytolysis","type":"related"}],"termid":"GO:0042270"}


id: GO:0050009
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADP+ + propan-2-ol = acetone + H+ + NADPH.","definition_xrefs":["RHEA:21792","EC:1.1.1.80"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"isopropanol dehydrogenase (NADP+) activity","secondary_identifiers":["KEGG_REACTION:R01550","MetaCyc:ISOPROPANOL-DEHYDROGENASE-NADP+-RXN"],"synonyms":[{"name":"propan-2-ol:NADP+ oxidoreductase activity","type":"related"}],"termid":"GO:0050009"}


id: PBO:0053329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 160","termid":"PBO:0053329"}


id: PBO:0067319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 405, pseudogene","termid":"PBO:0067319"}


id: GO:0035960
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of ergosterol biosynthetic process by modulating the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["PMID:11533229","GOC:dgf","PMID:16055745"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of ergosterol biosynthetic process by regulation of transcription from RNA polymerase II promoter (obsolete GO:0035960)","synonyms":[{"name":"regulation of ergosterol anabolism by regulation of transcription from Pol II promoter","type":"exact"},{"name":"regulation of ergosterol anabolism by regulation of transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of ergosterol biosynthesis by regulation of transcription from Pol II promoter","type":"exact"},{"name":"regulation of ergosterol biosynthesis by regulation of transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of ergosterol biosynthetic process by regulation of transcription from Pol II promoter","type":"related"},{"name":"regulation of ergosterol formation by regulation of transcription from Pol II promoter","type":"exact"},{"name":"regulation of ergosterol formation by regulation of transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of ergosterol synthesis by regulation of transcription from Pol II promoter","type":"exact"},{"name":"regulation of ergosterol synthesis by regulation of transcription from RNA polymerase II promoter","type":"related"}],"termid":"GO:0035960"}


id: GO:1990324
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A collagen homotrimer of alpha1(XXVI) chains.","definition_xrefs":["PMID:17876790","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"collagen trimer","termid":"GO:0005581"},{"relation_name":"part_of","term_name":"collagen-containing extracellular matrix","termid":"GO:0062023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"collagen type XXVI trimer","termid":"GO:1990324"}


id: PBO:0076003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STIM1 antisense RNA 1","termid":"PBO:0076003"}


id: GO:0002855
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of natural killer cell mediated immune response to a tumor cell.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of natural killer cell mediated immunity","termid":"GO:0002715"},{"relation_name":"is_a","term_name":"regulation of immune response to tumor cell","termid":"GO:0002837"},{"relation_name":"regulates","term_name":"natural killer cell mediated immune response to tumor cell","termid":"GO:0002423"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of natural killer cell mediated immune response to tumor cell","termid":"GO:0002855"}


id: GO:0045591
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of differentiation of regulatory T cells.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of T cell differentiation","termid":"GO:0045582"},{"relation_name":"is_a","term_name":"regulation of regulatory T cell differentiation","termid":"GO:0045589"},{"relation_name":"positively_regulates","term_name":"regulatory T cell differentiation","termid":"GO:0045066"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"positively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"positive regulation of regulatory T cell differentiation","synonyms":[{"name":"activation of regulatory T cell differentiation","type":"narrow"},{"name":"positive regulation of regulatory T cell development","type":"related"},{"name":"positive regulation of regulatory T lymphocyte differentiation","type":"exact"},{"name":"positive regulation of regulatory T-cell differentiation","type":"exact"},{"name":"positive regulation of regulatory T-lymphocyte differentiation","type":"exact"},{"name":"positive regulation of suppressor T cell differentiation","type":"exact"},{"name":"positive regulation of suppressor T-cell differentiation","type":"exact"},{"name":"stimulation of regulatory T cell differentiation","type":"narrow"},{"name":"up regulation of regulatory T cell differentiation","type":"exact"},{"name":"up-regulation of regulatory T cell differentiation","type":"exact"},{"name":"upregulation of regulatory T cell differentiation","type":"exact"}],"termid":"GO:0045591"}


id: PBO:0049505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A clustered histone 12","termid":"PBO:0049505"}


id: GO:0140633
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a CARD8 inflammasome complex.","definition_xrefs":["PMID:33420033","PMID:33542150","PMID:33420028"],"direct_ancestors":[{"relation_name":"is_a","term_name":"canonical inflammasome complex assembly","termid":"GO:0140632"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0023052","GO:0065003"],"is_obsolete":false,"name":"CARD8 inflammasome complex assembly","termid":"GO:0140633"}


id: GO:0033212
data:
  {"annotated_genes":["SJAG_02834","SJAG_02735","SJAG_04743","SJAG_04675","SJAG_04677"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99848,108835,88518,88522],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033215"},{"annotations":[61318,61562,106829,106828],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033214"}]},"cv_name":"biological_process","definition":"The directed movement of iron ions from outside of a cell into the cytoplasmic compartment. This may occur via transport across the plasma membrane or via endocytosis.","definition_xrefs":["PMID:18622392","Wikipedia:Human_iron_metabolism","PMID:23192658"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron ion transport","termid":"GO:0006826"},{"relation_name":"is_a","term_name":"intracellular iron ion homeostasis","termid":"GO:0006879"},{"relation_name":"is_a","term_name":"establishment of localization in cell","termid":"GO:0051649"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02735":null,"SJAG_02834":null,"SJAG_04675":null,"SJAG_04677":null,"SJAG_04743":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098771"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0098771","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"iron import into cell","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["GO:0070627"],"synonyms":[{"name":"ferrous ion import","type":"narrow"},{"name":"ferrous iron import","type":"narrow"},{"name":"ferrous iron uptake","type":"narrow"},{"name":"iron assimilation","type":"related"}],"termid":"GO:0033212","terms_by_termid":{"GO:0033214":null,"GO:0033215":null}}


id: PBO:0064975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 31, pseudogene","termid":"PBO:0064975"}


id: MOD:01736
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a residue with the Proteome Sciences TMT6plex-128 reporter+balance group.","definition_xrefs":["Unimod:737"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TMT6plex reporter+balance reagent acylated residue","termid":"MOD:01715"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"TMT6plex-128 reporter+balance reagent acylated residue","synonyms":[{"name":"3-[(2,6-dimethylpiperidin-1-yl)acetyl]amino)propanoyl","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"}],"termid":"MOD:01736"}


id: PBO:0000430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"saccharopine dehydrogenase Lys3","termid":"PBO:0000430"}


id: PBO:0066442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reticulophagy regulator family member 3","termid":"PBO:0066442"}


id: GO:0071916
data:
  {"annotated_genes":["SJAG_02139","SJAG_01983","SJAG_05182"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99070,114347,114348],"is_not":false,"summary":null,"term":"GO:0071916"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a dipeptide from one side of a membrane to the other. A dipeptide is a combination of two amino acids linked together by a peptide (-CO-NH-) bond.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligopeptide transmembrane transporter activity","termid":"GO:0035673"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01983":null,"SJAG_02139":null,"SJAG_05182":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"dipeptide transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0042936"],"synonyms":[{"name":"dipeptide transporter activity","type":"related"}],"termid":"GO:0071916","terms_by_termid":{"GO:0071916":null}}


id: PBO:0057141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 219b","termid":"PBO:0057141"}


id: PBO:0034279
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_isoorthology_relationship_with","termid":"PBO:0034279"}


id: SO:0000374
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An RNA with catalytic activity.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"ribozymic","termid":"SO:0001186"},{"relation_name":"is_a","term_name":"enzymatic_RNA","termid":"SO:0000372"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribozyme","secondary_identifiers":["http://en.wikipedia.org/wiki/Ribozyme"],"synonyms":[{"name":"INSDC_feature:ncRNA","type":"broad"},{"name":"INSDC_qualifier:ribozyme","type":"exact"}],"termid":"SO:0000374"}


id: GO:0043246
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Large, cysteine proteinase rich lysosomes, often found in the amastigote (an intracytoplasmic, nonflagellated form of the parasite) stage of Leishmania species belonging to the mexicana complex.","definition_xrefs":["PMID:11206117","PMID:1999020"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysosome","termid":"GO:0005764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005773"}],"interesting_parent_ids":["GO:0005575","GO:0005773","GO:0005737"],"is_obsolete":false,"name":"megasome","termid":"GO:0043246"}


id: GO:1900285
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellotriose transport.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transport","termid":"GO:0051049"},{"relation_name":"regulates","term_name":"cellotriose transport","termid":"GO:2001096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of cellotriose transport","termid":"GO:1900285"}


id: PBO:0082193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Aldose reductase; involved in methylglyoxal, d-xylose, arabinose, and galactose metabolism; stress induced (osmotic, ionic, oxidative, heat shock, starvation and heavy metals); regulated by HOG pathway; overexpression allows xylose fermentation in strains expressing heterologous xylitol dehydrogenase and xylulokinase; protein abundance increases in response to DNA replication stress","termid":"PBO:0082193"}


id: GO:0001168
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a upstream control element (UCE, or alternately referred to as the upstream element, UE), a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase I in order to modulate transcription by RNA polymerase I.","definition_xrefs":["PMID:14969726","GOC:txnOH","PMID:12865296","PMID:8057832"],"gene_count":0,"genotype_count":0,"name":"obsolete transcription factor activity, RNA polymerase I upstream control element sequence-specific binding (obsolete GO:0001168)","synonyms":[{"name":"RNA polymerase I upstream control element sequence-specific DNA binding transcription factor activity","type":"exact"}],"termid":"GO:0001168"}


id: PBO:0065916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RABGEF1 pseudogene 2","termid":"PBO:0065916"}


id: GO:0046633
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of an alpha-beta T cell population by cell division.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell proliferation","termid":"GO:0042098"},{"relation_name":"is_a","term_name":"alpha-beta T cell activation","termid":"GO:0046631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"alpha-beta T cell proliferation","synonyms":[{"name":"alpha-beta T lymphocyte proliferation","type":"exact"},{"name":"alpha-beta T-cell proliferation","type":"exact"},{"name":"alpha-beta T-lymphocyte proliferation","type":"exact"}],"termid":"GO:0046633"}


id: PR:Q10211
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC4H3.03c gene.","definition_xrefs":["UniProtKB:Q10211","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C4H3.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4H3.03c","synonyms":[{"name":"Spom972h-SPAC4H3.03c","type":"exact"}],"termid":"PR:Q10211"}


id: SO:0002228
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant extending the CDS at the 5' end, that causes elongation of the resulting polypeptide sequence at the N terminus.","definition_xrefs":["PMID:14732127","PMID:31216041","PMID:32020195","PMID:27984720","PMID:15864293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CDS_extension","termid":"SO:0002227"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDS_five_prime_extension","synonyms":[{"name":"CDS Extension 5 prime","type":"exact"},{"name":"CDS Extension five prime","type":"exact"},{"name":"elongated CDS five prime","type":"exact"},{"name":"elongated_CDS_five_prime","type":"exact"}],"termid":"SO:0002228"}


id: PBO:0012851
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.1.4.1","termid":"PBO:0012851"}


id: GO:0072213
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the metanephric capsule over time, from its formation to the mature structure. The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal capsule development","termid":"GO:0072127"},{"relation_name":"part_of","term_name":"metanephros development","termid":"GO:0001656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric capsule development","termid":"GO:0072213"}


id: PBO:0050722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family D (Hsp60) member 1 pseudogene 8","termid":"PBO:0050722"}


id: GO:1990244
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: histone H2A-threonine (position 120) + ATP = histone H2A-phosphothreonine (position 120) + ADP. This reaction is the addition of a phosphate group to the threonine residue at position 120 of histone H2A.","definition_xrefs":["PMID:24140421"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine kinase activity","termid":"GO:0004674"},{"relation_name":"is_a","term_name":"histone H2A kinase activity","termid":"GO:0140995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0004672","GO:0016740","GO:0140096","GO:0003674","GO:0016301","GO:0003824"],"is_obsolete":false,"name":"histone H2AT120 kinase activity","synonyms":[{"name":"histone H2A-T120 kinase activity","type":"exact"},{"name":"histone kinase activity (H2A-T120 specific)","type":"exact"},{"name":"histone threonine kinase activity (H2A-T120 specific)","type":"exact"}],"termid":"GO:1990244"}


id: GO:0042625
data:
  {"annotated_genes":["SJAG_01447","SJAG_01471","SJAG_02782","SJAG_02023","SJAG_01817","SJAG_04015","SJAG_00212","SJAG_01397","SJAG_04955","SJAG_05294","SJAG_01913","SJAG_00136","SJAG_00516","SJAG_03406"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97692,98724,99969,105919,96067,114731,95990,84159,92691,86262,88127,85948,91734,94977],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046961"}]},"cv_name":"molecular_function","definition":"Enables the transfer of an ion from one side of a membrane to the other, driven by the reaction: ATP + H2O = ADP + phosphate.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATPase-coupled transmembrane transporter activity","termid":"GO:0042626"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00136":null,"SJAG_00212":null,"SJAG_00516":null,"SJAG_01397":null,"SJAG_01447":null,"SJAG_01471":null,"SJAG_01817":null,"SJAG_01913":null,"SJAG_02023":null,"SJAG_02782":null,"SJAG_03406":null,"SJAG_04015":null,"SJAG_04955":null,"SJAG_05294":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"ATPase-coupled ion transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ATP-dependent ion transmembrane transporter activity","type":"exact"},{"name":"ATPase activity, coupled to transmembrane movement of ions","type":"exact"},{"name":"ATPase coupled ion transmembrane transporter activity","type":"exact"}],"termid":"GO:0042625","terms_by_termid":{"GO:0046961":null}}


id: GO:0002870
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process contributing to anergy in T cells, a state of functional inactivation which is part of T cell tolerance induction.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphocyte anergy","termid":"GO:0002249"},{"relation_name":"is_a","term_name":"T cell tolerance induction","termid":"GO:0002517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T cell anergy","synonyms":[{"name":"T lymphocyte anergy","type":"exact"},{"name":"T-cell anergy","type":"exact"},{"name":"T-lymphocyte anergy","type":"exact"}],"termid":"GO:0002870"}


id: PBO:0088640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved endomembrane protein, RGS domain, implicated in signal transduction, cell polarity, possibly via membrane tethering","termid":"PBO:0088640"}


id: PBO:0079713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquilin like","termid":"PBO:0079713"}


id: PBO:0068731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U5A small nuclear 2, pseudogene","termid":"PBO:0068731"}


id: PBO:0080122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vesicle associated membrane protein 1","termid":"PBO:0080122"}


id: GO:0042797
data:
  {"annotated_genes":["SJAG_04408","SJAG_01765","SJAG_02101","SJAG_04261","SJAG_03921"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88108,89981,109850,111704,112802],"is_not":false,"summary":null,"term":"GO:0042797"}]},"cv_name":"biological_process","definition":"The synthesis of transfer RNA (tRNA) from a DNA template by RNA polymerase III (Pol III), originating at a Pol III promoter.","definition_xrefs":["ISBN:0321000382","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription by RNA polymerase III","termid":"GO:0006383"},{"relation_name":"is_a","term_name":"tRNA transcription","termid":"GO:0009304"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01765":null,"SJAG_02101":null,"SJAG_03921":null,"SJAG_04261":null,"SJAG_04408":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006399","GO:0006351","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"tRNA transcription by RNA polymerase III","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"tRNA transcription from Pol III promoter","type":"exact"},{"name":"tRNA transcription from RNA polymerase III promoter","type":"exact"}],"termid":"GO:0042797","terms_by_termid":{"GO:0042797":null}}


id: GO:0010280
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-D-glucose + NADPH + H+ = UDP-L-rhamnose + NADP+ + H2O.","definition_xrefs":["PMID:14701918","MetaCyc:RXN-5482"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity","termid":"GO:0016740"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"UDP-L-rhamnose synthase activity","synonyms":[{"name":"UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase-4-reductase activity","type":"narrow"}],"termid":"GO:0010280"}


id: PBO:0059584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylthioadenosine phosphorylase pseudogene 1","termid":"PBO:0059584"}


id: PBO:0065887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB35, member RAS oncogene family","termid":"PBO:0065887"}


id: PBO:0063386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"programmed cell death 5","termid":"PBO:0063386"}


id: GO:0010490
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-4-keto-rhamnose + NADPH = UDP-rhamnose + NADP+.","definition_xrefs":["GOC:tair_curators","PMID:17190829"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"UDP-4-keto-rhamnose-4-keto-reductase activity","termid":"GO:0010490"}


id: GO:0052736
data:
  {"annotated_genes":["SJAG_00667","SJAG_01017"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90097,96202],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052861"},{"annotations":[96203,90098],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052862"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of linkages in beta-D-glucans; beta-glucans are polysaccharides of D-glucose monomers linked by beta-glycosidic bonds.","definition_xrefs":["Wikipedia:Beta-glucan"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00667":null,"SJAG_01017":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016798","GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"beta-glucanase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"beta-D-glucanase activity","type":"exact"}],"termid":"GO:0052736","terms_by_termid":{"GO:0052861":null,"GO:0052862":null}}


id: PBO:0069463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 728, pseudogene","termid":"PBO:0069463"}


id: GO:0106394
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of a palmitic acid catabolic process.","definition_xrefs":["PMID:14677856"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular catabolic process","termid":"GO:0031330"},{"relation_name":"is_a","term_name":"negative regulation of fatty acid metabolic process","termid":"GO:0045922"},{"relation_name":"is_a","term_name":"negative regulation of lipid catabolic process","termid":"GO:0050995"},{"relation_name":"is_a","term_name":"regulation of palmitic acid catabolic process","termid":"GO:0106393"},{"relation_name":"negatively_regulates","term_name":"palmitic acid catabolic process","termid":"GO:1900534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0044248"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"negative regulation of palmitic acid catabolic process","termid":"GO:0106394"}


id: PBO:0027616
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-monopolar_mitotic_spindle_following_normal_mitosis","termid":"PBO:0027616"}


id: GO:0008865
data:
  {"annotated_genes":["SJAG_04495","SJAG_04334"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90604,94072],"is_not":false,"summary":null,"term":"GO:0008865"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + D-fructose = ADP + D-fructose 6-phosphate.","definition_xrefs":["EC:2.7.1.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexokinase activity","termid":"GO:0004396"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04334":null,"SJAG_04495":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016301","GO:0003824"],"is_obsolete":false,"name":"fructokinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:FRUCTOKINASE-RXN","RHEA:16125"],"synonyms":[{"name":"ATP:D-fructose 6-phosphotransferase activity","type":"related"},{"name":"D-fructokinase activity","type":"related"},{"name":"D-fructose(D-mannose)kinase activity","type":"related"},{"name":"fructokinase (phosphorylating)","type":"related"}],"termid":"GO:0008865","terms_by_termid":{"GO:0008865":null}}


id: GO:0051559
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of phlobaphenes, red pigments with oligomeric or polymeric structure derived from the flavonoid intermediate flavan-4-ols.","definition_xrefs":["PMID:11402179"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"},{"relation_name":"is_a","term_name":"pigment biosynthetic process","termid":"GO:0046148"},{"relation_name":"is_a","term_name":"phlobaphene metabolic process","termid":"GO:0051558"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phlobaphene biosynthetic process","termid":"GO:0051559"}


id: PBO:0069046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 291, pseudogene","termid":"PBO:0069046"}


id: FYPO:0007600
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitochondrial outer membrane is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to mitochondrion","termid":"FYPO:0004336"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"decreased protein localization to mitochondrial outer membrane","synonyms":[{"name":"decreased protein localisation to mitochondrial outer membrane","type":"exact"},{"name":"decreased protein localization to mitochondrial outer membrane during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to mitochondrial outer membrane during vegetative growth","type":"exact"},{"name":"decreased protein localization to mitochondrion outer membrane","type":"exact"},{"name":"reduced protein localization to mitochondrial outer membrane","type":"exact"}],"termid":"FYPO:0007600"}


id: GO:0003415
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The growth of a chondrocyte, where growth contributes to the progression of the chondrocyte over time.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental cell growth","termid":"GO:0048588"},{"relation_name":"part_of","term_name":"chondrocyte development","termid":"GO:0002063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chondrocyte hypertrophy","termid":"GO:0003415"}


id: SO:0000495
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A 12 or 23 nucleotide spacer between the 3'D-HEPTAMER and 3'D-NONAMER of a 3'D-RS.","direct_ancestors":[{"relation_name":"is_a","term_name":"vertebrate_immune_system_gene_recombination_spacer","termid":"SO:0000563"},{"relation_name":"part_of","term_name":"three_prime_D_recombination_signal_sequence","termid":"SO:0000570"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three_prime_D_spacer","synonyms":[{"name":"3'D-SPACER","type":"exact"},{"name":"three prime D spacer","type":"exact"}],"termid":"SO:0000495"}


id: SOFP:qseq_type
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"qseq_type","termid":"SOFP:qseq_type"}


id: PBO:0031285
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-regulation_phenotype","termid":"PBO:0031285"}


id: GO:0070885
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the calcineurin-NFAT signaling cascade.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of calcineurin-NFAT signaling cascade","termid":"GO:0070884"},{"relation_name":"is_a","term_name":"negative regulation of calcineurin-mediated signaling","termid":"GO:0106057"},{"relation_name":"negatively_regulates","term_name":"calcineurin-NFAT signaling cascade","termid":"GO:0033173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of calcineurin-NFAT signaling cascade","secondary_identifiers":["GO:0051534"],"synonyms":[{"name":"down regulation of calcineurin-NFAT signaling cascade","type":"exact"},{"name":"down-regulation of calcineurin-NFAT signaling cascade","type":"exact"},{"name":"downregulation of calcineurin-NFAT signaling cascade","type":"exact"},{"name":"inhibition of NFAT protein import into nucleus","type":"narrow"},{"name":"inhibition of calcineurin-NFAT signaling cascade","type":"narrow"},{"name":"negative regulation of NFAT protein import into nucleus","type":"narrow"},{"name":"negative regulation of calcineurin-NFAT signaling pathway","type":"related"},{"name":"negative regulation of calcineurin-NFAT signalling cascade","type":"exact"},{"name":"termination of calcineurin-NFAT signaling cascade","type":"narrow"}],"termid":"GO:0070885"}


id: PR:O60169
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC19F8.05 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60169"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C19F8.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19F8.05","synonyms":[{"name":"Spom972h-SPBC19F8.05","type":"exact"}],"termid":"PR:O60169"}


id: PBO:0068389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNF207 antisense RNA 1","termid":"PBO:0068389"}


id: PBO:0039277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALG1 like 6, pseudogene","termid":"PBO:0039277"}


id: PATO:0002085
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"The period before death of the organism.","definition_xrefs":["merriam-webster:merriam-webster"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0002085 pre-mortem (obsolete PATO:0002085)","termid":"PATO:0002085"}


id: GO:0002875
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of a chronic inflammatory response to an antigenic stimulus.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of chronic inflammatory response","termid":"GO:0002677"},{"relation_name":"is_a","term_name":"negative regulation of inflammatory response to antigenic stimulus","termid":"GO:0002862"},{"relation_name":"is_a","term_name":"regulation of chronic inflammatory response to antigenic stimulus","termid":"GO:0002874"},{"relation_name":"negatively_regulates","term_name":"chronic inflammatory response to antigenic stimulus","termid":"GO:0002439"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of chronic inflammatory response to antigenic stimulus","synonyms":[{"name":"down regulation of chronic inflammatory response to antigenic stimulus","type":"exact"},{"name":"down-regulation of chronic inflammatory response to antigenic stimulus","type":"exact"},{"name":"downregulation of chronic inflammatory response to antigenic stimulus","type":"exact"},{"name":"inhibition of chronic inflammatory response to antigenic stimulus","type":"narrow"}],"termid":"GO:0002875"}


id: GO:0051935
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The uptake of L-glutamate by neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters.","definition_xrefs":["Wikipedia:Glutamate_transporter","ISBN:0123668387"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid neurotransmitter reuptake","termid":"GO:0051933"},{"relation_name":"is_a","term_name":"L-glutamate import across plasma membrane","termid":"GO:0098712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"glutamate reuptake","synonyms":[{"name":"L-glutamate reuptake","type":"exact"},{"name":"L-glutamate uptake during transmission of nerve impulse","type":"related"},{"name":"L-glutamate uptake involved in synaptic transmission","type":"exact"},{"name":"glutamate import into glial cell","type":"narrow"},{"name":"glutamate import into neuron","type":"narrow"},{"name":"glutamate recycling","type":"broad"},{"name":"glutamate uptake during transmission of nerve impulse","type":"related"}],"termid":"GO:0051935"}


id: FYPO:0005879
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form cytoplasmic microtubules that are curved to form a \\\"C\\\" shape, i.e. they follow a smooth bend rather than a straight line, with the curve centered at or near the midpoint of the microtubule, during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"curved interphase microtubules","termid":"FYPO:0003327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0002399","FYPO:0000054","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"C-shaped interphase microtubules","synonyms":[{"name":"C-shaped cytoplasmic microtubules during mitotic interphase","type":"exact"},{"name":"C-shaped interphase cytoplasmic microtubules","type":"exact"},{"name":"C-shaped interphase microtubules during mitotic cell cycle","type":"related"},{"name":"C-shaped interphase microtubules during vegetative growth","type":"exact"},{"name":"curved C-shaped interphase microtubules","type":"exact"}],"termid":"FYPO:0005879"}


id: GO:0003784
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete barbed-end actin capping/severing activity (obsolete GO:0003784)","synonyms":[{"name":"barbed-end actin capping/severing activity","type":"exact"}],"termid":"GO:0003784"}


id: PBO:0045082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"delta like non-canonical Notch ligand 1","termid":"PBO:0045082"}


id: GO:0070720
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the receptor adaptor proteins Grb2 and SHP-2, and is involved signaling via the PDGFR signaling pathway.","definition_xrefs":["GOC:mah","PMID:8943348"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"Grb2-SHP-2 complex","synonyms":[{"name":"GRB2-SHP-2 complex, PDGF stimulated","type":"narrow"}],"termid":"GO:0070720"}


id: SO:0001363
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"5_aminomethyl_2_thiouridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_aminomethyl_two_thiouridine","secondary_identifiers":["RNAMOD:071"],"synonyms":[{"name":"5-aminomethyl-2-thiouridine","type":"exact"},{"name":"five aminomethyl two thiouridine","type":"exact"},{"name":"nm5s2U","type":"exact"}],"termid":"SO:0001363"}


id: GO:0052319
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of phytoalexin biosynthesis, the chemical reactions and pathways resulting in the formation of phytoalexins.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of phytoalexin metabolic process","termid":"GO:0052318"},{"relation_name":"is_a","term_name":"regulation of secondary metabolite biosynthetic process","termid":"GO:1900376"},{"relation_name":"regulates","term_name":"phytoalexin biosynthetic process","termid":"GO:0052315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"regulation of phytoalexin biosynthetic process","synonyms":[{"name":"regulation of phytoalexin biosynthesis","type":"exact"}],"termid":"GO:0052319"}


id: PATO:0000133
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object.","definition_xrefs":["PATOC:JE"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orientation","secondary_identifiers":["PATO:0000137"],"synonyms":[{"name":"amount of rotation","type":"related"},{"name":"angle","type":"related"},{"name":"angular magnitude","type":"related"},{"name":"angular placement","type":"exact"},{"name":"plane angle","type":"related"}],"termid":"PATO:0000133"}


id: PBO:0064265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology and FYVE domain containing 1","termid":"PBO:0064265"}


id: GO:0006465
data:
  {"annotated_genes":["SJAG_01750","SJAG_03648","SJAG_04583","SJAG_02867","SJAG_03121","SJAG_02809","SJAG_03737","SJAG_03261","SJAG_01179"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83768,90791,94489,99133,99876,104122,105239,107036,108600],"is_not":false,"summary":null,"term":"GO:0006465"}]},"cv_name":"biological_process","definition":"The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell.","definition_xrefs":["GOC:mah","ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide metabolic process","termid":"GO:0006518"},{"relation_name":"is_a","term_name":"protein processing","termid":"GO:0016485"}],"gene_count":9,"genes_by_uniquename":{"SJAG_01179":null,"SJAG_01750":null,"SJAG_02809":null,"SJAG_02867":null,"SJAG_03121":null,"SJAG_03261":null,"SJAG_03648":null,"SJAG_03737":null,"SJAG_04583":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0051604"],"is_obsolete":false,"name":"signal peptide processing","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"leader peptide processing","type":"exact"}],"termid":"GO:0006465","terms_by_termid":{"GO:0006465":null}}


id: PBO:0057016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 105-1","termid":"PBO:0057016"}


id: PBO:0067850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 152","termid":"PBO:0067850"}


id: GO:0033920
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 6-phospho-beta-D-galactoside + H2O = 6-phospho-D-galactose + an alcohol.","definition_xrefs":["RHEA:24568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactosidase activity","termid":"GO:0015925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787","GO:0016798"],"is_obsolete":false,"name":"6-phospho-beta-galactosidase activity","secondary_identifiers":["EC:3.2.1.85","MetaCyc:6-PHOSPHO-BETA-GALACTOSIDASE-RXN"],"synonyms":[{"name":"6-phospho-beta-D-galactosidase activity","type":"related"},{"name":"6-phospho-beta-D-galactoside 6-phosphogalactohydrolase activity","type":"related"},{"name":"beta-D-phosphogalactoside galactohydrolase activity","type":"related"},{"name":"phospho-beta-D-galactosidase activity","type":"related"},{"name":"phospho-beta-galactosidase activity","type":"related"}],"termid":"GO:0033920"}


id: PR:O94396
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pus1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA pseudouridine synthase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC126.03","synonyms":[{"name":"Spom972h-pus1","type":"exact"},{"name":"tRNA pseudouridylate synthase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tRNA-uridine isomerase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94396"}


id: GO:0070796
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cleistothecium development, a process that leads to the formation of a cleistothecium. The cleistothecium is a closed sexual fruiting body that contains ascospores in linear asci, characteristic of some filamentous Ascomycete fungi such as members of the genera Aspergillus and Emericella.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sporocarp development involved in sexual reproduction","termid":"GO:1902058"},{"relation_name":"regulates","term_name":"cleistothecium development","termid":"GO:0070791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cleistothecium development","termid":"GO:0070796"}


id: GO:0008507
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: iodide(out) + Na+(out) = iodide(in) + Na+(in).","definition_xrefs":["TC:2.A.21.5.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iodide transmembrane transporter activity","termid":"GO:0015111"},{"relation_name":"is_a","term_name":"monoatomic anion:sodium symporter activity","termid":"GO:0015373"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"sodium:iodide symporter activity","secondary_identifiers":["Reactome:R-HSA-429591","Reactome:R-HSA-5658195"],"synonyms":[{"name":"sodium/iodide symporter activity","type":"exact"}],"termid":"GO:0008507"}


id: PBO:0050355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 58","termid":"PBO:0050355"}


id: GO:0052578
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (E,E)-alpha-farnesene + diphosphate.","definition_xrefs":["MetaCyc:RXN-8574"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpene synthase activity","termid":"GO:0010334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"alpha-farnesene synthase activity","secondary_identifiers":["RHEA:27421"],"synonyms":[{"name":"(E,E)-alpha-farnesene synthase activity","type":"exact"}],"termid":"GO:0052578"}


id: GO:1905892
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to thapsigargin.","definition_xrefs":["GOC:TermGenie","GOC:aruk","PMID:21803450","GO_REF:0000058","GOC:bc"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of cellular response to thapsigargin (obsolete GO:1905892)","synonyms":[{"name":"down regulation of cellular response to thapsigargin","type":"exact"},{"name":"down-regulation of cellular response to thapsigargin","type":"exact"},{"name":"downregulation of cellular response to thapsigargin","type":"exact"},{"name":"inhibition of cellular response to thapsigargin","type":"narrow"}],"termid":"GO:1905892"}


id: FYPO:0002440
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cable distribution is abnormal. The process normally establishes the spatial arrangement of actin cables within the cell. Actin cables are parallel actin filament bundles nucleated by formin, and are the most common form of actin filament bundles found in yeasts.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cable organization","termid":"FYPO:0002030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0004803","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal actin cable distribution","synonyms":[{"name":"abnormal actin cable distribution during mitotic cell cycle","type":"related"},{"name":"abnormal actin cable distribution during vegetative growth","type":"exact"},{"name":"abnormal actin cable localization","type":"related"},{"name":"abnormal formin-nucleated actin cable distribution","type":"exact"}],"termid":"FYPO:0002440"}


id: FYPO:0003688
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleolus is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to nucleus during vegetative growth","termid":"FYPO:0001424"},{"relation_name":"is_a","term_name":"abnormal protein localization to nucleolus","termid":"FYPO:0003687"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000138","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein localization to nucleolus","synonyms":[{"name":"abolished protein localisation to nucleolus","type":"exact"},{"name":"abolished protein localization in nucleolus","type":"exact"},{"name":"abolished protein localization to nucleolus during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to nucleolus during vegetative growth","type":"exact"},{"name":"protein localization to nucleolus abolished","type":"exact"}],"termid":"FYPO:0003688"}


id: PATO:0002147
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A virulence that is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"virulence","termid":"PATO:0002146"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reduced virulence","synonyms":[{"name":"attenuated","type":"exact"}],"termid":"PATO:0002147"}


id: PBO:0066583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ras homolog family member A","termid":"PBO:0066583"}


id: PBO:0064045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 79","termid":"PBO:0064045"}


id: GO:0098914
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which ions are transported across a membrane such that the atrial cardiomyocyte membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane repolarization during cardiac muscle cell action potential","termid":"GO:0086013"},{"relation_name":"is_a","term_name":"atrial cardiac muscle cell membrane repolarization","termid":"GO:0099624"},{"relation_name":"part_of","term_name":"atrial cardiac muscle cell action potential","termid":"GO:0086014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"membrane repolarization during atrial cardiac muscle cell action potential","synonyms":[{"name":"atrial repolarization","type":"related"},{"name":"electrocardiogram QRS complex","type":"related"}],"termid":"GO:0098914"}


id: GO:0090177
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Coordinated organization of groups of cells in the plane of an epithelium that contributes to the closure of the neural tube.","definition_xrefs":["GOC:ascb_2009","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of planar polarity of embryonic epithelium","termid":"GO:0042249"},{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"neural tube closure","termid":"GO:0001843"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"establishment of planar polarity involved in neural tube closure","termid":"GO:0090177"}


id: PBO:0043731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6C pseudogene 10","termid":"PBO:0043731"}


id: PBO:0072505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 34","termid":"PBO:0072505"}


id: PBO:0084667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial alcohol dehydrogenase isozyme III; involved in the shuttling of mitochondrial NADH to the cytosol under anaerobic conditions and ethanol production","termid":"PBO:0084667"}


id: PR:O59764
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ER membrane protein complex subunit 6 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04440","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein complex subunit 6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1020.11c","secondary_identifiers":["UniProtKB:O59764"],"synonyms":[{"name":"Spom972h-EMC6","type":"exact"}],"termid":"PR:O59764"}


id: GO:0080171
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lytic vacuole.","definition_xrefs":["PMID:20729380"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vacuole organization","termid":"GO:0007033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lytic vacuole organization","synonyms":[{"name":"lytic vacuolar assembly","type":"narrow"},{"name":"lytic vacuole biogenesis","type":"related"},{"name":"lytic vacuole organisation","type":"exact"},{"name":"lytic vacuole organization and biogenesis","type":"related"}],"termid":"GO:0080171"}


id: GO:0010598
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Complex that possesses NAD(P)H dehydrogenase (plastoquinone) activity. The complex is one of the components of the electron transport chain. It is involved in electron transport from an unidentified electron donor, possibly NADH, NADPH or ferredoxin(Fd) to the plastoquinone pool.","definition_xrefs":["PMID:15608332"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"NAD(P)H dehydrogenase complex (plastoquinone)","termid":"GO:0010598"}


id: PBO:0071809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 4","termid":"PBO:0071809"}


id: GO:0035026
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire specialized structural and/or functional features of leading edge cells, cells at the front of a migrating epithelial sheet.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation","termid":"GO:0030855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leading edge cell differentiation","termid":"GO:0035026"}


id: FYECO:0000346
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Any set of experimental conditions that places all cells in a culture into the same growth stage (e.g. cell cycle phase).","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping experimental environment","termid":"FYECO:0000132"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synchronous culture","termid":"FYECO:0000346"}


id: PBO:0109940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase, spliceosomal Prp43","termid":"PBO:0109940"}


id: PBO:0011100
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription induced by copper limitation","termid":"PBO:0011100"}


id: GO:0009461
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A cytochrome containing heme bound to the protein by one or, more (commonly two) thioether bonds involving sulfhydryl groups of cysteine residues.","definition_xrefs":["GOC:kd"],"gene_count":0,"genotype_count":0,"name":"obsolete cytochrome c (obsolete GO:0009461)","termid":"GO:0009461"}


id: GO:0046660
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The establishment of the sex of a female organism by physical differentiation.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sex differentiation","termid":"GO:0007548"},{"relation_name":"part_of","term_name":"multicellular organism development","termid":"GO:0007275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"female sex differentiation","termid":"GO:0046660"}


id: PATO:0002402
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Multiple lesions some interconnecting with each other.","definition_xrefs":["PATOC:MPATH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multi-localised","termid":"PATO:0001791"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multifocal to coalescing","termid":"PATO:0002402"}


id: PBO:0053565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 578","termid":"PBO:0053565"}


id: GO:0047802
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + S-(4-bromophenyl)-L-cysteine = (4-bromophenylsulfanyl)pyruvate + L-glutamate.","definition_xrefs":["EC:2.6.1.75","RHEA:13485"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016769"],"is_obsolete":false,"name":"cysteine-conjugate transaminase activity","secondary_identifiers":["KEGG_REACTION:R04338","MetaCyc:CYSTEINE-CONJUGATE-TRANSAMINASE-RXN"],"synonyms":[{"name":"S-(4-bromophenyl)-L-cysteine:2-oxoglutarate aminotransferase activity","type":"related"},{"name":"cysteine conjugate aminotransferase activity","type":"related"},{"name":"cysteine-conjugate alpha-ketoglutarate transaminase (CAT-1)","type":"related"}],"termid":"GO:0047802"}


id: PBO:0080244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 7 pseudogene","termid":"PBO:0080244"}


id: SO:0001635
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant located within 5KB 5' of a gene.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"upstream_gene_variant","termid":"SO:0001631"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5KB_upstream_variant","secondary_identifiers":["http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp"],"synonyms":[{"name":"5kb upstream variant","type":"exact"},{"name":"Seattleseq:upstream-gene","type":"exact"},{"name":"upstream","type":"exact"}],"termid":"SO:0001635"}


id: GO:1904358
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of telomere maintenance via telomere lengthening.","definition_xrefs":["GOC:BHF","GO_REF:0000058","GOC:BHF_telomere","GOC:nc","PMID:23959892","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of telomere maintenance","termid":"GO:0032206"},{"relation_name":"is_a","term_name":"regulation of telomere maintenance via telomere lengthening","termid":"GO:1904356"},{"relation_name":"positively_regulates","term_name":"telomere maintenance via telomere lengthening","termid":"GO:0010833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0032200"},{"rel_name":"positively_regulates","termid":"GO:0032200"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0032200","GO:0008150"],"is_obsolete":false,"name":"positive regulation of telomere maintenance via telomere lengthening","synonyms":[{"name":"activation of telomere maintenance via telomere lengthening","type":"narrow"},{"name":"up regulation of telomere maintenance via telomere lengthening","type":"exact"},{"name":"up-regulation of telomere maintenance via telomere lengthening","type":"exact"},{"name":"upregulation of telomere maintenance via telomere lengthening","type":"exact"}],"termid":"GO:1904358"}


id: PBO:0042927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chorionic gonadotropin subunit beta 7","termid":"PBO:0042927"}


id: PBO:0074300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLX1 homolog A, structure-specific endonuclease subunit","termid":"PBO:0074300"}


id: GO:0048822
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process aimed at the progression of an enucleate erythrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell.","definition_xrefs":["GOC:devbiol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"erythrocyte development","termid":"GO:0048821"},{"relation_name":"part_of","term_name":"enucleate erythrocyte differentiation","termid":"GO:0043353"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"enucleate erythrocyte development","synonyms":[{"name":"enucleate RBC development","type":"exact"},{"name":"enucleate red blood cell development","type":"exact"}],"termid":"GO:0048822"}


id: GO:1990343
data:
  {"annotated_genes":["SJAG_01601"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[115288],"is_not":false,"summary":null,"term":"GO:1990343"}]},"cv_name":"cellular_component","definition":"A region of heterochromatin that is formed dynamically under specific growth conditions by a process that requires RNAi, and is enriched in histone H3 methylated on lysine 9 (H3K9me).","definition_xrefs":["PMID:24210919","PMID:23151475"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterochromatin","termid":"GO:0000792"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01601":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005694","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"heterochromatin domain","references_by_uniquename":{"PMID:32109380":null},"synonyms":[{"name":"HOOD","type":"exact"}],"termid":"GO:1990343","terms_by_termid":{"GO:1990343":null}}


id: PBO:0071459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32","termid":"PBO:0071459"}


id: GO:0003382
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The change in form that occurs when an epithelial cell progresses from its initial formation to its mature state.","definition_xrefs":["GOC:tb","GOC:dph","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell morphogenesis","termid":"GO:0000902"},{"relation_name":"part_of","term_name":"epithelial cell development","termid":"GO:0002064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial cell morphogenesis","termid":"GO:0003382"}


id: GO:0070837
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of dehydroascorbate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Dehydroascorbate, 5-(1,2-dihydroxyethyl)furan-2,3,4(5H)-trione, is an oxidized form of vitamin C.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"},{"relation_name":"is_a","term_name":"vitamin transport","termid":"GO:0051180"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"dehydroascorbic acid transport","synonyms":[{"name":"dehydroascorbate transport","type":"exact"}],"termid":"GO:0070837"}


id: PBO:0028856
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-conjugation_without_nitrogen_starvation","termid":"PBO:0028856"}


id: PBO:0039079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-acylglycerol-3-phosphate O-acyltransferase 5 pseudogene 1","termid":"PBO:0039079"}


id: PATO:0001046
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"resistance to","synonyms":[{"name":"resistance","type":"exact"}],"termid":"PATO:0001046"}


id: PBO:0088211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Small toxic protein; overexpression inhibits ergosterol biosynthesis; not required for normal growth, not conserved in related yeast species including S. paradoxus","termid":"PBO:0088211"}


id: PBO:0065550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostaglandin E receptor 4","termid":"PBO:0065550"}


id: GO:0046018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase I promoter that occurs during the mitotic cell cycle.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase I promoter during mitotic cell cycle (obsolete GO:0046018)","synonyms":[{"name":"activation of transcription from RNA polymerase I promoter during mitosis","type":"narrow"},{"name":"mitotic activation of transcription from Pol I promoter","type":"exact"},{"name":"positive regulation of transcription from Pol I promoter during mitosis","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase I promoter, mitotic","type":"exact"},{"name":"stimulation of transcription from RNA polymerase I promoter during mitosis","type":"narrow"},{"name":"up regulation of transcription from RNA polymerase I promoter during mitosis","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase I promoter during mitosis","type":"exact"},{"name":"upregulation of transcription from RNA polymerase I promoter during mitosis","type":"exact"}],"termid":"GO:0046018"}


id: PR:Q9UT45
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- eng1 gene.","definition_xrefs":["UniProtKB:Q9UT45","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endo-1,3(4)-beta-glucanase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC821.09","synonyms":[{"name":"Spom972h-eng1","type":"exact"},{"name":"endo-1,3-beta-glucanase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"endo-1,4-beta-glucanase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"laminarinase-1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UT45"}


id: PR:O59945
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A plastin-3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03567","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fimbrin (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1778.06c","secondary_identifiers":["UniProtKB:O59945"],"synonyms":[{"name":"Spom972h-PLS3","type":"exact"}],"termid":"PR:O59945"}


id: FYPO:0004140
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of glutathione (GSH) measured in a cell that is subject to nitrogen starvation is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell","termid":"FYPO:0000990"},{"relation_name":"is_a","term_name":"altered level of substance in cell during nitrogen starvation","termid":"FYPO:0004139"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular glutathione level during nitrogen starvation","synonyms":[{"name":"increased cellular GSH level during nitrogen starvation","type":"exact"},{"name":"increased cellular L-gamma-glutamyl-L-cysteinylglycine level during nitrogen starvation","type":"exact"},{"name":"increased cellular glutathione level during nitrogen depletion","type":"exact"},{"name":"increased cellular glutathione level during nitrogen deprivation","type":"exact"},{"name":"increased cellular reduced glutathione level during nitrogen starvation","type":"exact"},{"name":"increased glutathione accumulation during nitrogen starvation","type":"related"}],"termid":"FYPO:0004140"}


id: GO:0034926
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pyrene-4,5-oxide + H2O = trans-4,5-dihydroxy-4,5-dihydropyrene.","definition_xrefs":["UM-BBD_reactionID:r0942"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ether hydrolase activity","termid":"GO:0016803"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"pyrene-4,5-epoxide hydrolase activity","termid":"GO:0034926"}


id: PBO:0089475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyridoxal phosphate-dependent transferase, unknown specificity, implicated in sulfur compound metabolism","termid":"PBO:0089475"}


id: GO:0019442
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of tryptophan into other compounds, including acetyl-CoA.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetyl-CoA metabolic process","termid":"GO:0006084"},{"relation_name":"is_a","term_name":"tryptophan catabolic process","termid":"GO:0006569"},{"relation_name":"is_a","term_name":"amide catabolic process","termid":"GO:0043605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281","GO:0006790","GO:0044248","GO:0055086"],"is_obsolete":false,"name":"tryptophan catabolic process to acetyl-CoA","secondary_identifiers":["MetaCyc:TRYPTOPHAN-DEGRADATION-1"],"synonyms":[{"name":"tryptophan breakdown to acetyl-CoA","type":"exact"},{"name":"tryptophan degradation to acetyl-CoA","type":"exact"}],"termid":"GO:0019442"}


id: GO:0050216
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD+ + propane-1,2-diol 1-phosphate = H+ + hydroxyacetone phosphate + NADH.","definition_xrefs":["EC:1.1.1.7","RHEA:21584"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"propanediol-phosphate dehydrogenase activity","secondary_identifiers":["MetaCyc:PROPANEDIOL-PHOSPHATE-DEHYDROGENASE-RXN","KEGG_REACTION:R04236"],"termid":"GO:0050216"}


id: PBO:0073085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SDHA pseudogene 1","termid":"PBO:0073085"}


id: FYPO:0002066
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a cell has no septum, is elongated, and is inviable.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated aseptate vegetative cell","termid":"FYPO:0000950"},{"relation_name":"is_a","term_name":"inviable elongated vegetative cell","termid":"FYPO:0001490"},{"relation_name":"is_a","term_name":"inviable aseptate vegetative cell","termid":"FYPO:0003931"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0000032","FYPO:0005447","FYPO:0001985","FYPO:0000004","FYPO:0001320","FYPO:0000005"],"is_obsolete":false,"name":"inviable elongated aseptate cell","synonyms":[{"name":"inviable elongated aseptate cell during mitotic cell cycle","type":"related"},{"name":"inviable elongated aseptate cell during vegetative growth","type":"exact"},{"name":"inviable long aseptate cell","type":"exact"},{"name":"lethal; elongated aseptate cell","type":"exact"}],"termid":"FYPO:0002066"}


id: GO:0009210
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of pyrimidine ribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with triphosphate on the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleoside triphosphate catabolic process","termid":"GO:0009149"},{"relation_name":"is_a","term_name":"ribonucleoside triphosphate catabolic process","termid":"GO:0009203"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleoside triphosphate metabolic process","termid":"GO:0009208"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"pyrimidine ribonucleoside triphosphate catabolic process","synonyms":[{"name":"pyrimidine ribonucleoside triphosphate breakdown","type":"exact"},{"name":"pyrimidine ribonucleoside triphosphate catabolism","type":"exact"},{"name":"pyrimidine ribonucleoside triphosphate degradation","type":"exact"}],"termid":"GO:0009210"}


id: PBO:0044920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DiGeorge syndrome critical region gene 6","termid":"PBO:0044920"}


id: PBO:0055222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2648","termid":"PBO:0055222"}


id: PBO:0038507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily D member 1 pseudogene 2","termid":"PBO:0038507"}


id: PATO:0002102
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A cellular quality inhering in a cell that arises by virtue of whether the bearer exhibits the ability to grow and proliferate in number through cell division.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular quality","termid":"PATO:0001396"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proliferative","termid":"PATO:0002102"}


id: GO:0060360
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of leucine import as a result of an ammonium ion stimulus. Leucine import is the directed movement of leucine into a cell or organelle.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of L-leucine import across plasma membrane","termid":"GO:1905533"},{"relation_name":"part_of","term_name":"cellular response to ammonium ion","termid":"GO:0071242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of leucine import in response to ammonium ion","synonyms":[{"name":"negative regulation of leucine uptake in response to ammonium ion","type":"exact"}],"termid":"GO:0060360"}


id: GO:0016825
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of any acid phosphorus-nitrogen bond.","definition_xrefs":["EC:3.9.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity","termid":"GO:0016787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"hydrolase activity, acting on acid phosphorus-nitrogen bonds","termid":"GO:0016825"}


id: GO:0102759
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + campestanol + O2 + NADPH = 6-deoxycathasterone + H2O + NADP.","definition_xrefs":["EC:1.14.13.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"campestanol hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-773"],"termid":"GO:0102759"}


id: PBO:0071886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 24","termid":"PBO:0071886"}


id: PBO:0053580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 603","termid":"PBO:0053580"}


id: FYPO:0006722
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the Cdr2 medial cortical node complex is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:28924043"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization to Cdr2 medial cortical node complex","synonyms":[{"name":"normal protein localisation to Cdr2 medial cortical node complex","type":"exact"},{"name":"normal protein localization to Cdr2 medial cortical node complex during mitotic cell cycle","type":"related"},{"name":"normal protein localization to Cdr2 medial cortical node complex during vegetative growth","type":"exact"}],"termid":"FYPO:0006722"}


id: PBO:0065202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRPF31 antisense RNA 1","termid":"PBO:0065202"}


id: PBO:0049791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA complex group 26","termid":"PBO:0049791"}


id: PBO:0077950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon AGC) 9-1","termid":"PBO:0077950"}


id: GO:0047102
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + NAD+ + 2-aminomuconate semialdehyde = NADH + 2-amino-muconate.","definition_xrefs":["EC:1.2.1.32","MetaCyc:1.2.1.32-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"aminomuconate-semialdehyde dehydrogenase activity","secondary_identifiers":["RHEA:14469","Reactome:R-HSA-71239","UM-BBD_reactionID:r1434"],"synonyms":[{"name":"2-aminomuconate semialdehyde dehydrogenase activity","type":"related"},{"name":"2-aminomuconate-6-semialdehyde:NAD+ 6-oxidoreductase activity","type":"related"},{"name":"2-hydroxymuconate semialdehyde dehydrogenase activity","type":"related"},{"name":"2-hydroxymuconic acid semialdehyde dehydrogenase activity","type":"related"},{"name":"2-hydroxymuconic semialdehyde dehydrogenase activity","type":"related"},{"name":"alpha-aminomuconic epsilon-semialdehyde dehydrogenase activity","type":"related"},{"name":"alpha-hydroxymuconic epsilon-semialdehyde dehydrogenase activity","type":"related"}],"termid":"GO:0047102"}


id: PBO:0017901
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by rat PEMT","termid":"PBO:0017901"}


id: PBO:0012859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome subunit Rrp45","termid":"PBO:0012859"}


id: PBO:0089783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRAPP II complex subunit Trs130","termid":"PBO:0089783"}


id: GO:0007135
data:
  {"annotated_genes":["SJAG_00646","SJAG_00486","SJAG_04271","SJAG_03989","SJAG_03090","SJAG_04508","SJAG_00207","SJAG_00678"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101155,102872,103768],"is_not":false,"summary":null,"term":"GO:0007135"},{"annotations":[83989,89901],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051456"},{"annotations":[84124,109273,107723],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045144"}]},"cv_name":"biological_process","definition":"The second nuclear division of meiosis, in which the two chromatids in each chromosome are separated, resulting in four daughter nuclei from the two nuclei produced in meiosis II.","definition_xrefs":["GOC:dph","GOC:mah","ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiosis II cell cycle process","termid":"GO:0061983"},{"relation_name":"is_a","term_name":"meiotic nuclear division","termid":"GO:0140013"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00207":null,"SJAG_00486":null,"SJAG_00646":null,"SJAG_00678":null,"SJAG_03090":null,"SJAG_03989":null,"SJAG_04271":null,"SJAG_04508":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0140013","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"meiosis II","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Meiosis#Meiosis_II"],"synonyms":[{"name":"meiosis II nuclear division","type":"exact"}],"termid":"GO:0007135","terms_by_termid":{"GO:0007135":null,"GO:0045144":null,"GO:0051456":null}}


id: PBO:0054248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1630","termid":"PBO:0054248"}


id: GO:0006610
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a ribosomal protein from the cytoplasm into the nucleus, across the nuclear membrane. At least some ribosomal proteins, including rpl12, uses the importin 11 pathway as a major route into the nucleus.","definition_xrefs":["GOC:ai","PMID:11809816"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein import into nucleus","termid":"GO:0006606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810","GO:0006913"],"is_obsolete":false,"name":"ribosomal protein import into nucleus","synonyms":[{"name":"ribosomal protein import into cell nucleus","type":"exact"},{"name":"ribosomal protein transport from cytoplasm to nucleus","type":"exact"},{"name":"ribosomal protein-nucleus import","type":"exact"}],"termid":"GO:0006610"}


id: PATO:0000580
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000580 absolute weight value (obsolete PATO:0000580)","termid":"PATO:0000580"}


id: PBO:0068791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 28, pseudogene","termid":"PBO:0068791"}


id: PBO:0070407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication protein A2 pseudogene 1","termid":"PBO:0070407"}


id: PR:O42832
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An rRNA methyltransferase 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00360","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AdoMet-dependent rRNA methyltransferase spb1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1687.11","secondary_identifiers":["UniProtKB:O42832"],"synonyms":[{"name":"2'-O-ribose RNA methyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"S-adenosyl-L-methionine-dependent methyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-FTSJ3","type":"exact"}],"termid":"PR:O42832"}


id: FYPO:0007790
data:
  {"alleles_by_uniquename":{"SJAG_00601:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00601","name":"rip1delta","uniquename":"SJAG_00601:allele-1"},"SJAG_01355:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01355","name":"cox6delta","uniquename":"SJAG_01355:allele-1"},"SJAG_01680:allele-2":{"allele_type":"amino_acid_mutation","description":"P470L","gene_uniquename":"SJAG_01680","name":"chk1-P470L","synonyms":[{"name":"chk1- hyperactive (chk1-hyp)","reference":"PMID:23090706","type":"exact"},{"name":"chk1-hyperactive (chk1-hyp)","reference":"PMID:20368354","type":"exact"}],"uniquename":"SJAG_01680:allele-2"},"SJAG_02266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02266","name":"rad24delta","uniquename":"SJAG_02266:allele-1"},"SJAG_02486:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02486","name":"ste6delta","uniquename":"SJAG_02486:allele-1"},"SJAG_04287:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04287","name":"cds1delta","uniquename":"SJAG_04287:allele-1"},"SJAG_04671:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04671","name":"mrc1delta","uniquename":"SJAG_04671:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115179],"is_not":false,"summary":null,"term":"FYPO:0007790"}],"single_locus_phenotype":[{"annotations":[115169,115176,115405,115406,115607],"is_not":false,"summary":null,"term":"FYPO:0007790"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype in which hyphal growth is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:31150379"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"},{"relation_name":"is_a","term_name":"biological process phenotype","termid":"FYPO:0000300"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00601":null,"SJAG_01355":null,"SJAG_01680":null,"SJAG_02266":null,"SJAG_02486":null,"SJAG_04287":null,"SJAG_04671":null},"genotype_count":6,"genotypes_by_uniquename":{"cds1delta":{"display_name":"cds1delta","display_uniquename":"cds1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04287:allele-1","expression":"Null"}]}]},"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta":{"display_name":"chk1-P470L(aa) rad24delta","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}]},"cox6delta":{"display_name":"cox6delta","display_uniquename":"cox6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01355:allele-1","expression":"Null"}]}]},"mrc1delta":{"display_name":"mrc1delta","display_uniquename":"mrc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04671:allele-1","expression":"Null"}]}]},"rip1delta":{"display_name":"rip1delta","display_uniquename":"rip1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00601:allele-1","expression":"Null"}]}]},"ste6delta":{"display_name":"ste6delta","display_uniquename":"ste6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02486:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_01680","SJAG_02266"],"name":"normal hyphal growth","references_by_uniquename":{"PMID:23090706":null,"PMID:29566183":null,"PMID:31150379":null,"PMID:37164017":null},"single_locus_annotated_genes":["SJAG_04287","SJAG_00601","SJAG_02486","SJAG_04671","SJAG_01355"],"single_locus_genotype_uniquenames":["cds1delta","rip1delta","ste6delta","mrc1delta","cox6delta"],"synonyms":[{"name":"hyphal growth abolished","type":"exact"}],"termid":"FYPO:0007790","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000015":null,"FYECO:0000137":null,"FYPO:0007790":null}}


id: PBO:0018065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial thiamine pyrophosphate transmembrane transporter (predicted)","termid":"PBO:0018065"}


id: GO:0042498
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a lipopeptide containing a nonprotein moiety consisting of two acyl groups.","definition_xrefs":["PMID:12524386","PMID:2757794","GOC:add","PMID:12077222"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipopeptide binding","termid":"GO:0071723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0008289","GO:0005488"],"is_obsolete":false,"name":"diacyl lipopeptide binding","synonyms":[{"name":"bacterial diacyl lipopeptide binding","type":"narrow"},{"name":"bacterial diacyl lipoprotein binding","type":"related"},{"name":"diacylated lipopeptide binding","type":"exact"}],"termid":"GO:0042498"}


id: PBO:0082765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the SMC5-SMC6 complex; this complex plays a key role in the removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair","termid":"PBO:0082765"}


id: PBO:0072813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sterile alpha motif domain containing 9","termid":"PBO:0072813"}


id: PBO:0044591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"developing brain homeobox 2","termid":"PBO:0044591"}


id: PBO:0062144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily F member 14 pseudogene","termid":"PBO:0062144"}


id: GO:1905768
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of double-stranded telomeric DNA binding.","definition_xrefs":["PMID:18812185","GOC:BHF_telomere","GOC:TermGenie","GO_REF:0000059","GOC:BHF","GOC:nc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of telomeric DNA binding","termid":"GO:1904743"},{"relation_name":"is_a","term_name":"regulation of double-stranded telomeric DNA binding","termid":"GO:1905767"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of double-stranded telomeric DNA binding","synonyms":[{"name":"down regulation of double-stranded telomeric DNA binding","type":"exact"},{"name":"down-regulation of double-stranded telomeric DNA binding","type":"exact"},{"name":"downregulation of double-stranded telomeric DNA binding","type":"exact"},{"name":"inhibition of double-stranded telomeric DNA binding","type":"narrow"}],"termid":"GO:1905768"}


id: PBO:0039315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"allantoicase","termid":"PBO:0039315"}


id: GO:0052908
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4 S-adenosyl-L-methionine + adenine(1518)/adenine(1519) in 16S rRNA = 4 S-adenosyl-L-homocysteine + N(6)-dimethyladenine(1518)/N(6)-dimethyladenine(1519) in 16S rRNA.","definition_xrefs":["RHEA:19609"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA (adenine-N6,N6-)-dimethyltransferase activity","termid":"GO:0000179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0003824","GO:0016741","GO:0140098","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity","secondary_identifiers":["EC:2.1.1.182","MetaCyc:RXN-11633"],"synonyms":[{"name":"S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase activity","type":"related"}],"termid":"GO:0052908"}


id: GO:0071807
data:
  {"annotated_genes":["SJAG_04855"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98333],"is_not":false,"summary":null,"term":"GO:0071807"}]},"cv_name":"biological_process","definition":"A replication fork arrest process that contributes to the termination of DNA replication.","definition_xrefs":["GOC:mah","PMID:20797631","PMID:17347517"],"direct_ancestors":[{"relation_name":"is_a","term_name":"replication fork arrest","termid":"GO:0043111"},{"relation_name":"part_of","term_name":"DNA replication termination","termid":"GO:0006274"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04855":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"regulates","termid":"GO:0006260"},{"rel_name":"negatively_regulates","termid":"GO:0006259"},{"rel_name":"negatively_regulates","termid":"GO:0006260"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006260","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"replication fork arrest involved in DNA replication termination","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0071807","terms_by_termid":{"GO:0071807":null}}


id: GO:0033361
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate; in this pathway tetrahydrodipicolinate is converted to meso-diaminopimelate in a single enzymatic step.","definition_xrefs":["GOC:pr","MetaCyc:PWY-2942","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysine biosynthetic process via diaminopimelate","termid":"GO:0009089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"lysine biosynthetic process via diaminopimelate, dehydrogenase pathway","synonyms":[{"name":"lysine anabolism via diaminopimelate, dehydrogenase pathway","type":"exact"},{"name":"lysine biosynthesis via diaminopimelic acid, dehydrogenase pathway","type":"exact"},{"name":"lysine formation via diaminopimelate, dehydrogenase pathway","type":"exact"},{"name":"lysine synthesis via diaminopimelate, dehydrogenase pathway","type":"exact"}],"termid":"GO:0033361"}


id: GO:0030964
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An integral membrane complex that possesses NADH oxidoreductase activity. The complex is one of the components of the electron transport chain. It catalyzes the transfer of a pair of electrons from NADH to a quinone.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"NADH dehydrogenase complex","secondary_identifiers":["GO:0031675","GO:0030966","GO:0031677","GO:0030025","GO:0031678","GO:0045280","Wikipedia:NADH_dehydrogenase"],"synonyms":[{"name":"Complex I","type":"exact"},{"name":"NADH dehydrogenase complex (plastoquinone)","type":"narrow"},{"name":"NADH dehydrogenase complex (quinone)","type":"narrow"},{"name":"NADH dehydrogenase complex (ubiquinone)","type":"narrow"},{"name":"NADH:plastoquinone reductase complex","type":"narrow"},{"name":"plastid NADH dehydrogenase complex (plastoquinone)","type":"narrow"}],"termid":"GO:0030964"}


id: GO:0033612
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a receptor that possesses protein serine/threonine kinase activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"receptor serine/threonine kinase binding","synonyms":[{"name":"transmembrane receptor protein serine/threonine kinase ligand binding","type":"related"}],"termid":"GO:0033612"}


id: PATO:0000078
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a single process inhering in a bearer by virtue of the bearer's movement or variation characterized by the regular recurrence or alternation of different quantities or conditions.","definition_xrefs":["answers.com:answers.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"temporal distribution quality","termid":"PATO:0002323"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rhythm quality","termid":"PATO:0000078"}


id: FYPO:0005459
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which double-strand break repair via nonhomologous end joining (NHEJ) does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished double-strand break repair","termid":"FYPO:0005436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000293"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0001320","FYPO:0000002","FYPO:0000293","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abolished double-strand break repair via nonhomologous end joining","synonyms":[{"name":"abolished double-strand break repair via NHEJ","type":"exact"},{"name":"abolished double-strand break repair via nonhomologous end joining during mitotic cell cycle","type":"related"},{"name":"abolished double-strand break repair via nonhomologous end joining during vegetative growth","type":"exact"},{"name":"double-strand break repair via nonhomologous end joining abolished","type":"exact"}],"termid":"FYPO:0005459"}


id: PATO:0001315
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A temperature which is increased by a low degree.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased temperature","termid":"PATO:0001305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mild increased temperature","termid":"PATO:0001315"}


id: PBO:0070882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L15 pseudogene 14","termid":"PBO:0070882"}


id: PBO:0061237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOP53 ribosome biogenesis factor","termid":"PBO:0061237"}


id: GO:0097223
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of a sperm, a mature male germ cell that develops from a spermatid.","definition_xrefs":["GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete sperm part (obsolete GO:0097223)","termid":"GO:0097223"}


id: PBO:0067945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 247","termid":"PBO:0067945"}


id: GO:0042955
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of dextrin, any one, or the mixture, of the intermediate polysaccharides formed during the hydrolysis of starch, which are dextrorotatory, soluble in water, and precipitable in alcohol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide transport","termid":"GO:0015774"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"dextrin transport","termid":"GO:0042955"}


id: PBO:0000223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dubious","termid":"PBO:0000223"}


id: GO:0097225
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The highly organized segment of the sperm flagellum which begins at the connecting piece and is characterized by the presence of 9 outer dense fibers (ODFs) that lie outside each of the 9 outer axonemal microtubule doublets and by a sheath of mitochondria that encloses the ODFs and the axoneme; the midpiece terminates about one-fourth of the way down the sperm flagellum at the annulus, which marks the beginning of the principal piece.","definition_xrefs":["GOC:cjm","MP:0009831"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"sperm flagellum","termid":"GO:0036126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"sperm midpiece","termid":"GO:0097225"}


id: FYPO:0001135
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of the 35S rRNA primary transcript measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased rRNA precursor level","termid":"FYPO:0003600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"increased 35S rRNA precursor level","synonyms":[{"name":"increased 35S rRNA precursor accumulation","type":"related"},{"name":"increased 35S rRNA precursor level during mitotic cell cycle","type":"related"},{"name":"increased 35S rRNA precursor level during vegetative growth","type":"exact"},{"name":"increased 35S rRNA precursor transcript level","type":"exact"},{"name":"increased 35S rRNA primary transcript level","type":"exact"}],"termid":"FYPO:0001135"}


id: GO:0004790
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine(1+) + dimethyl sulfide = S-adenosyl-L-homocysteine + trimethylsulfonium.","definition_xrefs":["RHEA:19613","EC:2.1.1.96"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-methyltransferase activity","termid":"GO:0008172"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016741","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"thioether S-methyltransferase activity","secondary_identifiers":["MetaCyc:THIOETHER-S-METHYLTRANSFERASE-RXN","KEGG_REACTION:R02572"],"synonyms":[{"name":"S-adenosyl-L-methionine:dimethyl-sulfide S-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:thioether S-methyltransferase activity","type":"related"},{"name":"thioether methyltransferase activity","type":"related"}],"termid":"GO:0004790"}


id: PBO:0073921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 16 member 10","termid":"PBO:0073921"}


id: PBO:0004582
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.4.24.57","termid":"PBO:0004582"}


id: PBO:0039096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosylhomocysteinase like 2","termid":"PBO:0039096"}


id: PBO:0054049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1391","termid":"PBO:0054049"}


id: GO:0034791
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: isobutylamine + NADPH + O2 = isobutylhydroxylamine + NADP+ + H2O.","definition_xrefs":["UM-BBD_reactionID:r1053"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"isobutylamine N-hydroxylase activity","secondary_identifiers":["EC:1.14.13.-"],"termid":"GO:0034791"}


id: GO:0022025
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the binding of leukemia inhibitory factor to its receptor on the surface of the target cell, that contributes to the commitment of a neuroblast to a neuronal fate. The neuron will reside in the forebrain.","definition_xrefs":["GOC:jid","GOC:signaling","GOC:cls","GOC:dph","GO_REF:0000021","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukemia inhibitory factor signaling pathway","termid":"GO:0048861"},{"relation_name":"part_of","term_name":"commitment of multipotent stem cells to neuronal lineage in forebrain","termid":"GO:0021898"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"leukemia inhibitory factor signaling pathway involved in forebrain neuron fate commitment","synonyms":[{"name":"leukemia inhibitory factor signalling pathway involved in forebrain neuron fate commitment","type":"exact"}],"termid":"GO:0022025"}


id: PBO:0072788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sarcoma antigen 3, pseudogene","termid":"PBO:0072788"}


id: PBO:0060572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NBPF member 8","termid":"PBO:0060572"}


id: GO:0010193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ozone stimulus.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to reactive oxygen species","termid":"GO:0000302"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to ozone","termid":"GO:0010193"}


id: GO:0000044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The reduction of the ascorbate free radical to a stable form.","definition_xrefs":["GOC:mtg_electron_transport","GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete ascorbate stabilization (obsolete GO:0000044)","synonyms":[{"name":"ascorbate stabilization","type":"exact"},{"name":"vitamin C stabilization","type":"exact"}],"termid":"GO:0000044"}


id: GO:0033360
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of lysine, via the intermediates diaminopimelate and L-2-acetamido-6-oxoheptanedioate; in this pathway tetrahydrodipicolinate is converted to meso-diaminopimelate in four enzymatic steps.","definition_xrefs":["GOC:mah","MetaCyc:PWY-2941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysine biosynthetic process via diaminopimelate","termid":"GO:0009089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"lysine biosynthetic process via diaminopimelate and L-2-acetamido-6-oxoheptanedioate","synonyms":[{"name":"lysine anabolism via diaminopimelate and L-2-acetamido-6-oxoheptanedioate","type":"exact"},{"name":"lysine biosynthesis via diaminopimelic acid and L-2-acetamido-6-oxoheptanedioate","type":"exact"},{"name":"lysine biosynthetic process via diaminopimelic acid and L-2-acetamido-6-oxoheptanedioate","type":"exact"},{"name":"lysine formation via diaminopimelate and L-2-acetamido-6-oxoheptanedioate","type":"exact"},{"name":"lysine synthesis via diaminopimelate and L-2-acetamido-6-oxoheptanedioate","type":"exact"}],"termid":"GO:0033360"}


id: PBO:0004939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ran GTPase Spi1","termid":"PBO:0004939"}


id: GO:0006769
data:
  {"annotated_genes":["SJAG_01425"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96663],"is_not":false,"summary":null,"term":"GO:0006769"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving nicotinamide, pyridine-3-carboxamide, the amide of nicotinic acid. It is a member of the B complex of vitamins and occurs widely in living organisms.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"water-soluble vitamin metabolic process","termid":"GO:0006767"},{"relation_name":"is_a","term_name":"alkaloid metabolic process","termid":"GO:0009820"},{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"},{"relation_name":"is_a","term_name":"pyridine-containing compound metabolic process","termid":"GO:0072524"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01425":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006766"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006766"],"is_obsolete":false,"name":"nicotinamide metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PWY-5083"],"synonyms":[{"name":"niacin metabolic process","type":"related"},{"name":"niacin metabolism","type":"related"},{"name":"nicotinamide metabolism","type":"exact"},{"name":"vitamin B3 metabolic process","type":"broad"},{"name":"vitamin B3 metabolism","type":"broad"}],"termid":"GO:0006769","terms_by_termid":{"GO:0006769":null}}


id: GO:0010195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of microRNA, a large family of 21-22 nucleotide non-coding RNAs with presumed post-transcriptional regulatory activity.","definition_xrefs":["GOC:sm"],"gene_count":0,"genotype_count":0,"name":"obsolete microRNA biosynthetic process (obsolete GO:0010195)","synonyms":[{"name":"miRNA biosynthesis","type":"exact"},{"name":"miRNA biosynthetic process","type":"exact"},{"name":"microRNA anabolism","type":"exact"},{"name":"microRNA biosynthesis","type":"exact"},{"name":"microRNA biosynthetic process","type":"exact"},{"name":"microRNA formation","type":"exact"},{"name":"microRNA synthesis","type":"exact"}],"termid":"GO:0010195"}


id: PBO:0064838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP1R12A antisense RNA 1","termid":"PBO:0064838"}


id: PBO:0081829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 763","termid":"PBO:0081829"}


id: PBO:0109643
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 37 (pseudogene)","termid":"PBO:0109643"}


id: PBO:0012303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteiasome complex subunit beta 3, Pup3 (predicted)","termid":"PBO:0012303"}


id: GO:0070096
data:
  {"annotated_genes":["SJAG_03416","SJAG_02361"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86993,106451],"is_not":false,"summary":null,"term":"GO:0070096"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a mitochondrial outer membrane translocase complex.","definition_xrefs":["GOC:vk","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"part_of","term_name":"outer mitochondrial membrane organization","termid":"GO:0007008"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02361":null,"SJAG_03416":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0007005"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0044085","GO:0061024","GO:0008150","GO:0007005","GO:0065003"],"is_obsolete":false,"name":"mitochondrial outer membrane translocase complex assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"TOM complex assembly","type":"exact"},{"name":"mitochondrion outer membrane translocase complex assembly","type":"exact"}],"termid":"GO:0070096","terms_by_termid":{"GO:0070096":null}}


id: GO:0019548
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including spermine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arginine catabolic process","termid":"GO:0006527"},{"relation_name":"is_a","term_name":"spermine metabolic process","termid":"GO:0008215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0044281","GO:0044248"],"is_obsolete":false,"name":"arginine catabolic process to spermine","secondary_identifiers":["MetaCyc:ARGSPECAT-PWY"],"synonyms":[{"name":"arginine breakdown to spermine","type":"exact"},{"name":"arginine degradation to spermine","type":"exact"}],"termid":"GO:0019548"}


id: GO:0010412
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving mannan, a group of polysaccharides containing a backbone composed of a polymer of D-mannose units.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall polysaccharide metabolic process","termid":"GO:0010383"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0071554","GO:0008150"],"is_obsolete":false,"name":"mannan metabolic process","synonyms":[{"name":"mannan metabolism","type":"exact"}],"termid":"GO:0010412"}


id: GO:0007244
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. MAPKKK cascade involved in transduction of mating pheromone signal, as described in Saccharomyces.","definition_xrefs":["PMID:9561267"],"gene_count":0,"genotype_count":0,"name":"obsolete MAPKKK cascade (mating sensu Saccharomyces) (obsolete GO:0007244)","synonyms":[{"name":"MAPKKK cascade (mating sensu Saccharomyces)","type":"exact"}],"termid":"GO:0007244"}


id: GO:0047521
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3alpha,7alpha,12beta-trihydroxy-5beta-cholanate + NADP+ = 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanate + H+ + NADPH.","definition_xrefs":["RHEA:21424"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0033764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"3alpha,7alpha,12beta-trihydroxy-5beta-cholanate dehydrogenase activity","secondary_identifiers":["MetaCyc:12-BETA-HYDROXYSTEROID-DEHYDROGENASE-RXN","EC:1.1.1.238","KEGG_REACTION:R03495"],"synonyms":[{"name":"12-beta-hydroxysteroid dehydrogenase activity","type":"broad"},{"name":"12beta-hydroxy steroid (nicotinamide adenine dinucleotide phosphate) dehydrogenase activity","type":"broad"},{"name":"12beta-hydroxysteroid dehydrogenase activity","type":"broad"},{"name":"12beta-hydroxysteroid:NADP+ 12-oxidoreductase activity","type":"broad"}],"termid":"GO:0047521"}


id: FYPO:0003064
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the size, shape, or structure of the microtubule cytoskeleton is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton","termid":"FYPO:0002399"},{"relation_name":"is_a","term_name":"abnormal cytoskeleton morphology","termid":"FYPO:0003063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0002399","FYPO:0000054","FYPO:0005447"],"is_obsolete":false,"name":"abnormal microtubule cytoskeleton morphology","termid":"FYPO:0003064"}


id: PR:000050545
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GTP-binding protein gtr2 (Schizosaccharomyces pombe) that is non-covalently bound to GDP.","definition_xrefs":["PMID:27227887","PRO:DAN","PomBase:VW"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"},{"relation_name":"is_a","term_name":"GTP-binding protein gtr2 (Schizosaccharomyces pombe)","termid":"PR:000050544"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gtr2/GDP+","pombase_gene_id":"SPCC777.05","synonyms":[{"name":"PomBase_original_PRO_term_name: GTP-binding protein gtr2, GDP-bound form (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-gtr2/GDP+","type":"exact"},{"name":"gtr2/GDP+","type":"exact"},{"name":"Gtr2/GDP+","type":"exact"}],"termid":"PR:000050545"}


id: FYPO:0006727
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which DNA strand elongation involved in mitotic nuclear DNA replication does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"},{"relation_name":"is_a","term_name":"abnormal mitotic DNA replication elongation","termid":"FYPO:0006730"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000293","FYPO:0001320","FYPO:0000631","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abolished mitotic DNA replication elongation","synonyms":[{"name":"abolished DNA strand elongation involved in mitotic DNA replication","type":"exact"},{"name":"abolished DNA strand elongation involved in nuclear cell cycle DNA replication","type":"exact"},{"name":"abolished mitotic DNA replication elongation during mitotic cell cycle","type":"related"},{"name":"abolished mitotic DNA replication elongation during vegetative growth","type":"exact"},{"name":"mitotic DNA replication elongation abolished","type":"exact"}],"termid":"FYPO:0006727"}


id: FYPO:0003007
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to caffeine is lower than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level during vegetative growth","termid":"FYPO:0001324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased protein level during cellular response to caffeine","synonyms":[{"name":"decreased protein accumulation during cellular response to caffeine","type":"related"},{"name":"decreased protein level during cellular response to caffeine during mitotic cell cycle","type":"related"},{"name":"decreased protein level during cellular response to caffeine during vegetative growth","type":"exact"},{"name":"reduced protein level during cellular response to caffeine","type":"exact"}],"termid":"FYPO:0003007"}


id: FYPO:0002504
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the palmitoylation of one or more specific proteins, or of specific protein sites, does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein modification","termid":"FYPO:0002497"},{"relation_name":"is_a","term_name":"abnormal protein palmitoylation","termid":"FYPO:0002503"},{"relation_name":"is_a","term_name":"abolished biological process","termid":"FYPO:0005448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002494","FYPO:0002274","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein palmitoylation","synonyms":[{"name":"protein palmitoylation abolished","type":"exact"},{"name":"protein palmitoylation absent","type":"exact"}],"termid":"FYPO:0002504"}


id: SO:0000844
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of sequence which is a promoter for RNA polymerase II.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000844 RNApol_II_promoter_region (obsolete SO:0000844)","termid":"SO:0000844"}


id: GO:0002188
data:
  {"annotated_genes":["SJAG_02628","SJAG_01487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100112,101355],"is_not":false,"summary":null,"term":"GO:0002188"}]},"cv_name":"biological_process","definition":"A gene-specific translational control mechanism where the small ribosomal subunit remains attached to the mRNA following termination of translation, then resumes scanning on the same mRNA molecule and initiates again at a downstream start site. Reinitiation depends on de novo recruitment of the ternary complex that is required to recognize the next AUG codon.","definition_xrefs":["PMID:18056426","PMID:18765792"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic translational initiation","termid":"GO:0002183"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01487":null,"SJAG_02628":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0002181"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0002181"],"is_obsolete":false,"name":"translation reinitiation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0002188","terms_by_termid":{"GO:0002188":null}}


id: GO:0070059
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced in response to a stimulus indicating endoplasmic reticulum (ER) stress, and ends when the execution phase of apoptosis is triggered. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen.","definition_xrefs":["GOC:mtg_apoptosis","PMID:18701708","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to endoplasmic reticulum stress","termid":"GO:0034976"},{"relation_name":"is_a","term_name":"intrinsic apoptotic signaling pathway","termid":"GO:0097193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress","synonyms":[{"name":"ER stress-induced apoptosis","type":"exact"},{"name":"apoptosis in response to ER stress","type":"exact"},{"name":"apoptosis in response to endoplasmic reticulum stress","type":"broad"},{"name":"apoptosis triggered by ER stress","type":"exact"},{"name":"endoplasmic reticulum stress-induced apoptosis","type":"exact"},{"name":"intrinsic apoptotic signaling pathway induced by endoplasmic reticulum stress","type":"exact"}],"termid":"GO:0070059"}


id: PBO:0043712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6B1","termid":"PBO:0043712"}


id: PBO:0035987
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_histone_H4-K20_trimethylation_during_vegetative_growth","termid":"PBO:0035987"}


id: GO:0019144
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ADP-sugar + H2O = AMP + sugar 1-phosphate.","definition_xrefs":["EC:3.6.1.21"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"ADP-sugar diphosphatase activity","secondary_identifiers":["MetaCyc:ADPSUGPPHOSPHAT-RXN"],"synonyms":[{"name":"ADP-sugar pyrophosphatase activity","type":"related"},{"name":"ADP-sugar sugarphosphohydrolase activity","type":"related"},{"name":"ADPsugar pyrophosphatase activity","type":"related"},{"name":"adenosine diphosphosugar pyrophosphatase activity","type":"related"},{"name":"nucleoside diphosphate-sugar hydrolase activity","type":"broad"}],"termid":"GO:0019144"}


id: PBO:0076948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transforming growth factor alpha","termid":"PBO:0076948"}


id: GO:0060065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The reproductive developmental process whose specific outcome is the progression of the uterus over time, from its formation to the mature structure.","definition_xrefs":["GOC:ebc","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"},{"relation_name":"is_a","term_name":"reproductive structure development","termid":"GO:0048608"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"uterus development","synonyms":[{"name":"Mullerian tract development","type":"related"}],"termid":"GO:0060065"}


id: PBO:0074455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermine oxidase","termid":"PBO:0074455"}


id: GO:0060374
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of a mast cell. A mast cell is a cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myeloid leukocyte differentiation","termid":"GO:0002573"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mast cell differentiation","termid":"GO:0060374"}


id: GO:1990562
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An exosome complex that is assembled in the multivesicular body (MVB) membrane and chaperoned to the exosome by the ESCRT-III machinery.","definition_xrefs":["PMID:22660413","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular exosome complex","termid":"GO:1990563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005576","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"syndecan-syntenin-ALIX complex","synonyms":[{"name":"exosome complex","type":"broad"}],"termid":"GO:1990562"}


id: PBO:0066674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBPJ interacting and tubulin associated 1","termid":"PBO:0066674"}


id: PBO:0085035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-catalytic subunit of N-terminal acetyltransferase of the NatC type; required for replication of dsRNA virus; member of the Sm protein family","termid":"PBO:0085035"}


id: GO:0030820
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cAMP catabolic process (obsolete GO:0030820)","synonyms":[{"name":"regulation of 3',5' cAMP catabolic process","type":"exact"},{"name":"regulation of 3',5' cAMP catabolism","type":"exact"},{"name":"regulation of 3',5'-cAMP catabolic process","type":"exact"},{"name":"regulation of 3',5'-cAMP catabolism","type":"exact"},{"name":"regulation of adenosine 3',5'-cyclophosphate catabolic process","type":"exact"},{"name":"regulation of adenosine 3',5'-cyclophosphate catabolism","type":"exact"},{"name":"regulation of cAMP breakdown","type":"exact"},{"name":"regulation of cAMP catabolism","type":"exact"},{"name":"regulation of cAMP degradation","type":"exact"},{"name":"regulation of cyclic AMP catabolic process","type":"exact"},{"name":"regulation of cyclic AMP catabolism","type":"exact"}],"termid":"GO:0030820"}


id: PBO:0005370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing coactivator SRRM1 (predicted)","termid":"PBO:0005370"}


id: MOD:00141
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively results from forming an adduct between a cysteine residue and the tetrapyrrole compound phycoerythrobilin.","definition_xrefs":["PubMed:14588022","ChEBI:15618","PubMed:3838747","PubMed:3208761","PubMed:8876649","Unimod:388#C","RESID:AA0132"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tetrapyrrole modified residue","termid":"MOD:00700"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-phycoerythrobilin-L-cysteine","synonyms":[{"name":"(2S,3R,16R)-18-ethenyl-3-[(1R)-1-(((2R)-2-amino-2-carboxy)ethylsulfanyl)ethyl]-8,12-bis(2-carboxyethyl)-2,7,13,17-tetramethyl-2,3,15,16-tetrahydrobilin-1,19(21H,22H,24H)-dione","type":"exact"},{"name":"18-ethenyl-3-[1-((2-amino-2-carboxy)ethylsulfanyl)ethyl]-2,3,15,16-tetrahydro-2,7,13,17-tetramethyl-1,19-dioxo-(21H,22H,24H)-bilin-8,12-dipropanoic acid","type":"exact"},{"name":"BINDING Phycoerythrobilin chromophore (covalent; via 1 link)","type":"exact"},{"name":"PEB","type":"exact"},{"name":"Phycoerythrobilin","type":"related"},{"name":"S-phycoerythrobilin-L-cysteine","type":"exact"},{"name":"phycoerythrobilin","type":"related"},{"name":"phycoerythrobilin cysteine adduct","type":"exact"}],"termid":"MOD:00141"}


id: PBO:0030812
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_anisomycin","termid":"PBO:0030812"}


id: GO:1990476
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A synaptic vesicle belonging to the pool that remain unreleased even after prolonged stimulation causes a saturating degree of vesicular turnover. 50-80% of the total number of synaptic vesicles at a resting terminal bouton are in this pool.","definition_xrefs":["PMID:22745285","GOC:pad"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synaptic vesicle","termid":"GO:0008021"},{"relation_name":"part_of","term_name":"terminal bouton","termid":"GO:0043195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0031410","GO:0005737"],"is_obsolete":false,"name":"synaptic vesicle, resting pool","synonyms":[{"name":"reserve pool of synaptic vesicles","type":"exact"},{"name":"resting pool of synaptic vesicles","type":"exact"}],"termid":"GO:1990476"}


id: FYPO:0002478
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is viable and is curved along the long axis, and in which vacuoles are more visible (usually by microscopy) than normal. In a curved cell, the long axis follows a smooth bend rather than a straight line.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"vacuolated","termid":"FYPO:0001581"},{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"is_a","term_name":"viable curved vegetative cell","termid":"FYPO:0002112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001985","FYPO:0000004","FYPO:0001320"],"is_obsolete":false,"name":"viable curved vacuolated vegetative cell","synonyms":[{"name":"curved vacuolated viable cell","type":"exact"},{"name":"viable curved vacuolated cell during vegetative growth","type":"exact"},{"name":"viable curved vacuolated vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002478"}


id: PBO:0002974
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"K(m)=63 microM","termid":"PBO:0002974"}


id: PBO:0110387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAL antisense RNA 1","termid":"PBO:0110387"}


id: PBO:0003614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJ/DUF1977 DNAJB12 homolog (predicted)","termid":"PBO:0003614"}


id: FYPO:0004506
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleolar chromatin organization is abnormal, such that nucleolar chromatin is distributed in a ring-shaped structure around the nuclear periphery rather than in a crescent-shaped structure on one side of the nucleus.","definition_xrefs":["PMID:18362178","PomBase:mah","GO:1990700"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nucleolar chromatin organization","termid":"FYPO:0004505"},{"relation_name":"is_a","term_name":"abnormal chromatin organization resulting in peripheral chromatin distribution","termid":"FYPO:0005350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000641","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal nucleolar chromatin organization resulting in peripheral chromatin distribution","synonyms":[{"name":"abnormal chromatin organization at nucleolus resulting in peripheral chromatin distribution","type":"related"},{"name":"abnormal chromosome morphology, hollow bowl phenotype","type":"related"},{"name":"abnormal chromosome morphology, ring phenotype","type":"related"},{"name":"abnormal nucleolar chromatin organisation resulting in peripheral chromatin distribution","type":"exact"},{"name":"abnormal nucleolar chromatin organization resulting in peripheral chromatin distribution during mitotic cell cycle","type":"related"},{"name":"abnormal nucleolar chromatin organization resulting in peripheral chromatin distribution during vegetative growth","type":"exact"},{"name":"abnormal nucleolar chromatin organization resulting in ring-shaped chromatin distribution","type":"exact"},{"name":"nucleolar chromatin abnormally dispersed around nuclear periphery","type":"related"},{"name":"ring-shaped nuclear DNA","type":"related"},{"name":"ring-shaped nuclear chromatin distribution","type":"exact"}],"termid":"FYPO:0004506"}


id: PBO:0030104
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_ornithine_level","termid":"PBO:0030104"}


id: PBO:0078020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 10","termid":"PBO:0078020"}


id: PBO:0068723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4atac small nuclear 12, pseudogene","termid":"PBO:0068723"}


id: GO:0008164
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete organophosphorus resistance (obsolete GO:0008164)","synonyms":[{"name":"organophosphorus resistance","type":"exact"}],"termid":"GO:0008164"}


id: GO:0030875
data:
  {"annotated_genes":["SJAG_05180","SJAG_05237","SJAG_04210","SJAG_03603"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[95334,97218,111314,115417],"is_not":false,"summary":null,"term":"GO:0030875"}]},"cv_name":"cellular_component","definition":"Any of the tandem arrays of rDNA localized at the periphery of the nucleus and protruding into the nucleolus, and associated proteins. May be visible as a single or double spot by DAPI staining.","definition_xrefs":["PMID:1629244"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"nucleolar chromatin","termid":"GO:0030874"}],"gene_count":4,"genes_by_uniquename":{"SJAG_03603":null,"SJAG_04210":null,"SJAG_05180":null,"SJAG_05237":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0005730"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005694","GO:0005730","GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"rDNA protrusion","references_by_uniquename":{"GO_REF:0000107":null,"PMID:24184107":null},"synonyms":[{"name":"ribosomal DNA protrusion","type":"exact"}],"termid":"GO:0030875","terms_by_termid":{"GO:0030875":null}}


id: PBO:0075182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide F","termid":"PBO:0075182"}


id: PBO:0088885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein Pwp1","termid":"PBO:0088885"}


id: GO:0048626
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a myoblast in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.","definition_xrefs":["GOC:dph","GOC:mtg_muscle","CL:0000056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate specification","termid":"GO:0001708"},{"relation_name":"part_of","term_name":"myoblast fate commitment","termid":"GO:0048625"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myoblast fate specification","termid":"GO:0048626"}


id: GO:0009694
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving jasmonic acid, a fatty acid derivative with the formula (1R-(1 alpha, 2 beta(Z)))-3-oxo-2-(2-pentenyl)cyclopentaneacetic acid.","definition_xrefs":["ISBN:0387969845"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long-chain fatty acid metabolic process","termid":"GO:0001676"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"jasmonic acid metabolic process","synonyms":[{"name":"jasmonic acid metabolism","type":"exact"}],"termid":"GO:0009694"}


id: PBO:0069091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 338, pseudogene","termid":"PBO:0069091"}


id: PBO:0006169
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-exists_during","termid":"PBO:0006169"}


id: PBO:0049524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A.X variant histone","termid":"PBO:0049524"}


id: SO:0000871
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An mRNA that is polyadenylated.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"adjacent_to","term_name":"polyA_sequence","termid":"SO:0000610"},{"relation_name":"has_quality","term_name":"polyadenylated","termid":"SO:0000246"},{"relation_name":"is_a","term_name":"mRNA","termid":"SO:0000234"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyadenylated_mRNA","synonyms":[{"name":"polyadenylated mRNA","type":"exact"}],"termid":"SO:0000871"}


id: PBO:0078885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (anticodon CTG) 1-2","termid":"PBO:0078885"}


id: PBO:0091382
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"I:g.2343703_2343704insA","termid":"PBO:0091382"}


id: PBO:0011417
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_expressivity","termid":"PBO:0011417"}


id: PBO:0047049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 110 member D","termid":"PBO:0047049"}


id: FYPO:0007320
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which stress granule assembly occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal stress granule assembly during vegetative growth","termid":"FYPO:0002347"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased stress granule assembly during vegetative growth","synonyms":[{"name":"increased cytoplasmic stress granule assembly during vegetative growth","type":"exact"},{"name":"increased stress granule assembly during mitotic cell cycle","type":"related"},{"name":"increased stress granule formation during vegetative growth","type":"exact"}],"termid":"FYPO:0007320"}


id: GO:0106179
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the translocation of inorganic cations and their chelates.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete translocase activity acting on inorganic cations and their chelates (obsolete GO:0106179)","secondary_identifiers":["EC:7.2.-.-"],"termid":"GO:0106179"}


id: PBO:0077261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane p24 trafficking protein 10 pseudogene 1","termid":"PBO:0077261"}


id: PBO:0014251
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Induced during Sporogenesis in Pombe","termid":"PBO:0014251"}


id: PBO:0001258
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulated by Prr1","termid":"PBO:0001258"}


id: GO:0046808
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Antigenically dense structures located at the periphery of nuclei, close to but not abutting nuclear membranes. Assemblons contain the proteins for immature-capsid assembly; they are located at the periphery of a diffuse structure composed of proteins involved in DNA synthesis, which overlaps only minimally with the assemblons. More than one site can be present simultaneously.","definition_xrefs":["PMID:8676489"],"gene_count":0,"genotype_count":0,"name":"obsolete assemblon (obsolete GO:0046808)","termid":"GO:0046808"}


id: GO:2001273
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of glucose import in response to insulin stimulus.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of glucose import in response to insulin stimulus (obsolete GO:2001273)","synonyms":[{"name":"regulation of cellular glucose import in response to insulin stimulus","type":"exact"}],"termid":"GO:2001273"}


id: PATO:0001409
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's resembling a long tapered rod.","definition_xrefs":["Biology-online:Biology-online"],"direct_ancestors":[{"relation_name":"is_a","term_name":"convex 3-D shape","termid":"PATO:0002007"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spindle-shaped","termid":"PATO:0001409"}


id: PBO:0077946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon AGC) 6-1","termid":"PBO:0077946"}


id: PBO:0005573
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Extragenic suppressor of KinetoChore","termid":"PBO:0005573"}


id: GO:0006895
data:
  {"annotated_genes":["SJAG_04609","SJAG_02177","SJAG_01598","SJAG_00380","SJAG_01027","SJAG_01488","SJAG_02912","SJAG_04338","SJAG_04112","SJAG_02282","SJAG_02240","SJAG_04966","SJAG_03756","SJAG_03005"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85256,88356,90966,95959,96303,96363,97171,97615,100119,103412,109049,112999,114435,114505],"is_not":false,"summary":null,"term":"GO:0006895"}]},"cv_name":"biological_process","definition":"The directed movement of substances from the Golgi to early sorting endosomes. Clathrin vesicles transport substances from the trans-Golgi to endosomes.","definition_xrefs":["ISBN:0716731363","PMID:10873832","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-Golgi vesicle-mediated transport","termid":"GO:0006892"},{"relation_name":"is_a","term_name":"cytosolic transport","termid":"GO:0016482"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00380":null,"SJAG_01027":null,"SJAG_01488":null,"SJAG_01598":null,"SJAG_02177":null,"SJAG_02240":null,"SJAG_02282":null,"SJAG_02912":null,"SJAG_03005":null,"SJAG_03756":null,"SJAG_04112":null,"SJAG_04338":null,"SJAG_04609":null,"SJAG_04966":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0016192","GO:0051179"],"is_obsolete":false,"name":"Golgi to endosome transport","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0048218"],"synonyms":[{"name":"Golgi to endosome vesicle-mediated transport","type":"exact"},{"name":"TGN to endosome transport","type":"exact"},{"name":"trans-Golgi to endosome transport","type":"exact"}],"termid":"GO:0006895","terms_by_termid":{"GO:0006895":null}}


id: GO:0160096
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the nematode pharyngeal muscle over time, from its formation to the mature structure.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscle organ development","termid":"GO:0007517"},{"relation_name":"part_of","term_name":"nematode pharynx development","termid":"GO:0160094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nematode pharyngeal muscle development","termid":"GO:0160096"}


id: PR:O94465
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cms1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94465"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein cms1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC23G7.07c","synonyms":[{"name":"Spom972h-cms1","type":"exact"}],"termid":"PR:O94465"}


id: PBO:0047029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 91 member A4, pseudogene","termid":"PBO:0047029"}


id: RO:0002505
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"p has intermediate c if and only if p has parts p1, p2 and p1 has output c, and p2 has input c","direct_ancestors":[{"relation_name":"is_a","term_name":"has_participant","termid":"RO:0000057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_intermediate","termid":"RO:0002505"}


id: GO:0019507
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving pyridine, a nitrogenous base (C5H5N) obtained from the distillation of bone oil or coal tar, and by the decomposition of certain alkaloids, as a colorless liquid with a peculiar pungent odor.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyridine-containing compound metabolic process","termid":"GO:0072524"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pyridine metabolic process","synonyms":[{"name":"pyridine metabolism","type":"exact"}],"termid":"GO:0019507"}


id: GO:0097310
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Methylation of the ribose of the first and second nucleotides of a 5'-capped mRNA.","definition_xrefs":["GOC:sp","PMID:20713356"],"gene_count":0,"genotype_count":0,"name":"obsolete cap2 mRNA methylation (obsolete GO:0097310)","synonyms":[{"name":"cap2 mRNA capping","type":"broad"}],"termid":"GO:0097310"}


id: GO:2001070
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to starch.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide binding","termid":"GO:0030247"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"starch binding","synonyms":[{"name":"amidon binding","type":"related"},{"name":"amylum binding","type":"related"}],"termid":"GO:2001070"}


id: GO:0048054
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire the specialized features of R2 and R5 photoreceptors. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"compound eye photoreceptor cell differentiation","termid":"GO:0001751"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"R2/R5 cell differentiation","termid":"GO:0048054"}


id: PBO:0061862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligodendrocyte transcription factor 3","termid":"PBO:0061862"}


id: PR:Q09673
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A pantothenate synthetase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pantoate--beta-alanine ligase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC5H10.08c","secondary_identifiers":["UniProtKB:Q09673"],"synonyms":[{"name":"Spom972h-panC","type":"exact"},{"name":"pantoate-activating enzyme (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"pantothenate synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09673"}


id: PR:Q9C1X1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pwp2 gene.","definition_xrefs":["UniProtKB:Q9C1X1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"periodic tryptophan protein 2 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC713.04c","synonyms":[{"name":"Spom972h-pwp2","type":"exact"}],"termid":"PR:Q9C1X1"}


id: PATO:0002132
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A disposition inhering in a tumour by virtue of the bearer's disposition not to invade surrounding tissues.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplastic","termid":"PATO:0002011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neoplastic, non-invasive","termid":"PATO:0002132"}


id: PBO:0030805
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_microtubule_cytoskeleton_during_vegetative_growth","termid":"PBO:0030805"}


id: SO:0001159
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162).","definition_xrefs":["PMID:12537576:16827941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"},{"relation_name":"part_of","term_name":"RNApol_II_promoter","termid":"SO:0000170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DMv5_motif","synonyms":[{"name":"DMv5","type":"exact"},{"name":"DMv5 motif","type":"exact"},{"name":"KTYRGTATWTTT","type":"narrow"},{"name":"directional motif v5","type":"exact"},{"name":"promoter motif 6","type":"related"}],"termid":"SO:0001159"}


id: PBO:0111934
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family 6","termid":"PBO:0111934"}


id: SO:0002010
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant whereby at least one base of a codon encoding pyrrolysine is changed, resulting in a different encoded amino acid.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rare_amino_acid_variant","termid":"SO:0002008"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyrrolysine_loss","synonyms":[{"name":"pyrrolysine loss","type":"exact"}],"termid":"SO:0002010"}


id: GO:0072218
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a metanephric ascending thin limb over time, from its formation to the mature structure. The metanephric ascending thin limb is a segment of a nephron tubule in the metanephros lying in the inner medulla that is permeable to ions but not to water and has a simple epithelium; active transepithelial solute transport is absent.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ascending thin limb development","termid":"GO:0072021"},{"relation_name":"is_a","term_name":"metanephric nephron tubule development","termid":"GO:0072234"},{"relation_name":"part_of","term_name":"metanephric loop of Henle development","termid":"GO:0072236"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric ascending thin limb development","termid":"GO:0072218"}


id: PBO:0070140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 54 pseudogene","termid":"PBO:0070140"}


id: PBO:0044140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTBP2 pseudogene 6","termid":"PBO:0044140"}


id: GO:0032261
data:
  {"annotated_genes":["SJAG_03298","SJAG_01859","SJAG_04123","SJAG_01070","SJAG_06634"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89605,112876],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044209"},{"annotations":[89825],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032263"},{"annotations":[97866,89827],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032264"},{"annotations":[85129],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034355"},{"annotations":[89829],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032265"}]},"cv_name":"biological_process","definition":"Any process which produces a purine nucleotide from derivatives of it, without de novo synthesis.","definition_xrefs":["GOC:jp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleotide biosynthetic process","termid":"GO:0006164"},{"relation_name":"is_a","term_name":"purine-containing compound salvage","termid":"GO:0043101"},{"relation_name":"is_a","term_name":"nucleotide salvage","termid":"GO:0043173"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01070":null,"SJAG_01859":null,"SJAG_03298":null,"SJAG_04123":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"purine nucleotide salvage","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0032261","terms_by_termid":{"GO:0032263":null,"GO:0032264":null,"GO:0032265":null,"GO:0034355":null,"GO:0044209":null}}


id: GO:0012502
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process which directly activates any of the steps required for programmed cell death.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of programmed cell death","termid":"GO:0043068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"induction of programmed cell death","secondary_identifiers":["GO:0012503"],"synonyms":[{"name":"induction of non-apoptotic programmed cell death","type":"narrow"},{"name":"induction of nonapoptotic programmed cell death","type":"narrow"}],"termid":"GO:0012502"}


id: PBO:0004494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTR family peptide transporter (predicted)","termid":"PBO:0004494"}


id: PBO:0059291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L42 pseudogene 6","termid":"PBO:0059291"}


id: PBO:0061865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OMA1 zinc metallopeptidase","termid":"PBO:0061865"}


id: PBO:0058323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4696","termid":"PBO:0058323"}


id: GO:0033561
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that modulates the rate or extent of water loss from an organism via the skin.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of water loss via skin (obsolete GO:0033561)","synonyms":[{"name":"skin barrier function","type":"related"}],"termid":"GO:0033561"}


id: PR:Q9Y7U0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- eis1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7U0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C63.14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC63.14","synonyms":[{"name":"Spom972h-eis1","type":"exact"}],"termid":"PR:Q9Y7U0"}


id: FYPO:0004700
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is bent along the long axis. In a bent cell, the long axis has one or more angles, rather than following a straight line.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vegetative cell shape","termid":"FYPO:0002196"},{"relation_name":"is_a","term_name":"bent cell","termid":"FYPO:0005793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"bent vegetative cell","synonyms":[{"name":"bent cell during vegetative growth","type":"exact"},{"name":"bent vegetative cell during mitotic cell cycle","type":"related"},{"name":"cell morphology, bent during vegetative growth","type":"exact"}],"termid":"FYPO:0004700"}


id: PBO:0004830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin Kap123","termid":"PBO:0004830"}


id: PBO:0072793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spalt like transcription factor 3","termid":"PBO:0072793"}


id: PBO:0041621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CABP7 divergent transcript","termid":"PBO:0041621"}


id: PBO:0005230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ino80 complex subunit (predicted)","termid":"PBO:0005230"}


id: PBO:0025543
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate dehydrogenase deficiency","termid":"PBO:0025543"}


id: GO:0120095
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An organelle membrane contact site formed at the junction of the vacuolar membrane and the isolation membrane or phagophore in response to starvation or other stresses, leading to the formation of the autophagosome.","definition_xrefs":["PMID:23549786"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle membrane contact site","termid":"GO:0044232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"vacuole-isolation membrane contact site","synonyms":[{"name":"VICS","type":"related"},{"name":"vacuole-IM contact site","type":"exact"},{"name":"vacuole-phagophore contact site","type":"exact"}],"termid":"GO:0120095"}


id: PBO:0081939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger HIT-type containing 2","termid":"PBO:0081939"}


id: GO:0075190
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont hyphopodium formation on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of hyphopodium formation","termid":"GO:0075188"},{"relation_name":"negatively_regulates","term_name":"hyphopodium formation","termid":"GO:0075187"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of hyphopodium formation","synonyms":[{"name":"negative regulation of hyphopodium formation on or near host","type":"exact"}],"termid":"GO:0075190"}


id: PBO:0083946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gamma subunit of coatomer; coatomer is a heptameric protein complex that together with Arf1p forms the COPI coat; involved in ER to Golgi transport of selective cargo","termid":"PBO:0083946"}


id: PBO:0090578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER-vacuole tethering sorting nexin Snx12","termid":"PBO:0090578"}


id: PBO:0064270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology and RhoGEF domain containing G4","termid":"PBO:0064270"}


id: PBO:0000078
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"no apparent orthologs","termid":"PBO:0000078"}


id: GO:0046608
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the isomerization of poly-cis-carotenoids to all-trans-carotenoids.","definition_xrefs":["PMID:11884677"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cis-trans isomerase activity","termid":"GO:0016859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"carotenoid isomerase activity","termid":"GO:0046608"}


id: PBO:0072878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAYSVFN motif domain containing 1","termid":"PBO:0072878"}


id: GO:1902405
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any actomyosin contractile ring localization that is involved in mitotic cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete mitotic actomyosin contractile ring localization (obsolete GO:1902405)","termid":"GO:1902405"}


id: PBO:0065893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB39B, member RAS oncogene family","termid":"PBO:0065893"}


id: PBO:0110193
data:
  {"annotation_feature_type":"gene","cv_name":"pubprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"canto_first_submitted_timestamp","termid":"PBO:0110193"}


id: PBO:0088823
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rab GAP Gyp3","termid":"PBO:0088823"}


id: GO:0034957
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-nitrophenol + 2 NADH + 2 H+ = 3-hydroxyaminophenol + 2 NAD+ + H2O.","definition_xrefs":["UM-BBD_reactionID:r1495"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor","termid":"GO:0046857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"3-nitrophenol nitroreductase activity","termid":"GO:0034957"}


id: PBO:0029004
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_S_phase_progression","termid":"PBO:0029004"}


id: PBO:0088151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuole-specific Myo2p receptor; Myo2p-Vac17p-Vac8p transport complex subunit required for vacuolar inheritance; mediates anchoring of phosphatidylinositol 3-kinase complex I (PIK3C3-C1) to autophagosome; required with Atg13p for the vesicle closure step of the cytoplasm-to-vacuole (CVT) pathway, for homotypic vacuole-vacuole fusion and for nucleus-vacuole junction formation with Nvj1p; contains 11 armadillo (ARM) repeats; myristoylated, palmitoylated, and phosphorylated","termid":"PBO:0088151"}


id: GO:0050134
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N(6)-methyl-L-lysine + H2O + O2 = L-lysine + formaldehyde + H2O2.","definition_xrefs":["RHEA:23200","EC:1.5.3.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor","termid":"GO:0016647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"N6-methyl-lysine oxidase activity","secondary_identifiers":["MetaCyc:N6-METHYL-LYSINE-OXIDASE-RXN","KEGG_REACTION:R00612"],"synonyms":[{"name":"6-N-methyl-L-lysine:oxygen oxidoreductase (demethylating)","type":"related"},{"name":"N(6)-methyllysine oxidase activity","type":"related"},{"name":"N6-methyl-L-lysine:oxygen oxidoreductase (demethylating)","type":"related"},{"name":"N6-methyllysine oxidase activity","type":"related"},{"name":"epsilon-N-methyllysine demethylase activity","type":"related"},{"name":"epsilon-alkyl-L-lysine:oxygen oxidoreductase activity","type":"related"},{"name":"epsilon-alkyllysinase activity","type":"related"}],"termid":"GO:0050134"}


id: GO:0018196
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of peptidyl-asparagine.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-asparagine modification (obsolete GO:0018196)","termid":"GO:0018196"}


id: FYPO:0006534
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the cell periphery does not occur when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"},{"relation_name":"is_a","term_name":"abnormal protein localization to cell periphery","termid":"FYPO:0006533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to cell periphery during nitrogen starvation","synonyms":[{"name":"abolished protein localisation to cell periphery during nitrogen starvation","type":"exact"},{"name":"abolished protein localization to cell periphery during nitrogen depletion","type":"exact"},{"name":"abolished protein localization to cell periphery during nitrogen deprivation","type":"exact"},{"name":"protein absent from cell periphery during nitrogen starvation","type":"related"},{"name":"protein localization to cell periphery abolished during nitrogen starvation","type":"exact"}],"termid":"FYPO:0006534"}


id: GO:0007260
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of introducing a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein.","definition_xrefs":["GOC:jl","PMID:10918594"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-tyrosine phosphorylation","termid":"GO:0018108"},{"relation_name":"part_of","term_name":"cell surface receptor signaling pathway via JAK-STAT","termid":"GO:0007259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"tyrosine phosphorylation of STAT protein","secondary_identifiers":["GO:0042502","GO:0042505","GO:0042503","GO:0042504","GO:0042507","GO:0042506","GO:0042508"],"synonyms":[{"name":"tyrosine phosphorylation of Stat1 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat2 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat3 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat4 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat5 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat6 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat7 protein","type":"narrow"}],"termid":"GO:0007260"}


id: PATO:0002094
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for basic dyes under specific ph conditions.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"affinity","termid":"PATO:0002070"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basophilic","termid":"PATO:0002094"}


id: PBO:0088335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L22","termid":"PBO:0088335"}


id: SO:0000146
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing when a sequence, usually an mRNA is capped by the addition of a modified guanine nucleotide at the 5' end.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcript_attribute","termid":"SO:0000237"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capped","termid":"SO:0000146"}


id: PBO:0086432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative integral membrane protein; member of DUP240 gene family; green fluorescent protein (GFP)-fusion protein localizes to the plasma membrane in a punctate pattern","termid":"PBO:0086432"}


id: PBO:0044619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"discoidin, CUB and LCCL domain containing 2","termid":"PBO:0044619"}


id: PBO:0075777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRSF3 pseudogene 6","termid":"PBO:0075777"}


id: GO:0047286
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: peptide diphthamide + NAD+ = peptide N-(ADP-D-ribosyl)diphthamide + niacinamide.","definition_xrefs":["EC:2.4.2.36"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"NAD+-diphthamide ADP-ribosyltransferase activity","secondary_identifiers":["RHEA:11820","Reactome:R-HSA-5336421","MetaCyc:RXN-11372"],"synonyms":[{"name":"ADP-ribosyltransferase activity","type":"broad"},{"name":"NAD+:peptide-diphthamide N-(ADP-D-ribosyl)transferase activity","type":"related"},{"name":"NAD-diphthamide ADP-ribosyltransferase activity","type":"exact"},{"name":"mono(ADP-ribosyl)transferase activity","type":"broad"}],"termid":"GO:0047286"}


id: PR:O14016
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ure6 gene.","definition_xrefs":["UniProtKB:O14016","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized urease accessory protein UreF-like (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29A4.13","synonyms":[{"name":"Spom972h-ure6","type":"exact"}],"termid":"PR:O14016"}


id: GO:0045992
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of embryonic development.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of embryonic development","termid":"GO:0045995"},{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"negatively_regulates","term_name":"embryo development","termid":"GO:0009790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of embryonic development","synonyms":[{"name":"down regulation of embryonic development","type":"exact"},{"name":"down-regulation of embryonic development","type":"exact"},{"name":"downregulation of embryonic development","type":"exact"},{"name":"inhibition of embryonic development","type":"narrow"}],"termid":"GO:0045992"}


id: GO:0009803
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving cinnamic acid, 3-phenyl-2-propenoic acid.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenylpropanoid metabolic process","termid":"GO:0009698"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"cinnamic acid metabolic process","synonyms":[{"name":"cinnamic acid metabolism","type":"exact"},{"name":"cinnamylic acid metabolic process","type":"exact"},{"name":"cinnamylic acid metabolism","type":"exact"},{"name":"phenylacrylic acid metabolic process","type":"exact"},{"name":"phenylacrylic acid metabolism","type":"exact"},{"name":"phenylpropenoic acid metabolic process","type":"exact"},{"name":"phenylpropenoic acid metabolism","type":"exact"}],"termid":"GO:0009803"}


id: PBO:0031135
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_regulation_of_translation_in_response_to_osmotic_stress","termid":"PBO:0031135"}


id: PBO:0110191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial MIB complex subunit, human DNAJC11 ortholog Mib1","termid":"PBO:0110191"}


id: FYPO:0004500
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the rate or occurrence of DNA polymerase processivity factor activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA polymerase processivity factor activity","termid":"FYPO:0004499"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"decreased DNA polymerase processivity factor activity","synonyms":[{"name":"reduced DNA polymerase processivity factor activity","type":"exact"}],"termid":"FYPO:0004500"}


id: PBO:0077795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"torsin 1A interacting protein 1","termid":"PBO:0077795"}


id: SO:0000834
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of a mature transcript.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcript_region","termid":"SO:0000833"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mature_transcript_region","synonyms":[{"name":"mature transcript region","type":"exact"}],"termid":"SO:0000834"}


id: GO:0001305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that results in changes in chromatin structure contributing to chronological cell aging, occurring in non-dividing cells.","definition_xrefs":["GOC:jh","GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete progressive alteration of chromatin involved in chronological cell aging (obsolete GO:0001305)","synonyms":[{"name":"progressive alteration of chromatin during chronological cell ageing","type":"related"},{"name":"progressive alteration of chromatin during chronological cell aging","type":"related"}],"termid":"GO:0001305"}


id: FYPO:0001734
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which duplicated mitotic spindle pole bodies do not separate.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle pole body separation","termid":"FYPO:0001733"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000337","FYPO:0001320","FYPO:0000054","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000641","FYPO:0000631"],"is_obsolete":false,"name":"abolished mitotic spindle pole body separation","synonyms":[{"name":"abolished spindle pole body separation during mitotic cell cycle","type":"related"},{"name":"clustered mitotic spindle pole bodies","type":"related"},{"name":"mitotic SPB separation abolished","type":"exact"},{"name":"mitotic spindle pole body separation abolished","type":"exact"},{"name":"spindle pole body separation abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0001734"}


id: GO:0040028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of development of the vulva. Vulval development is the process whose specific outcome is the progression of the egg-laying organ of female and hermaphrodite nematodes over time, from its formation to the mature structure. In nematodes, the vulva is formed from ventral epidermal cells during larval stages to give rise to a fully formed vulva in the adult.","definition_xrefs":["GOC:ma","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"regulates","term_name":"vulval development","termid":"GO:0040025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of vulval development","termid":"GO:0040028"}


id: PBO:0044847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 131B","termid":"PBO:0044847"}


id: GO:0005346
data:
  {"annotated_genes":["SJAG_03334","SJAG_04325","SJAG_02050","SJAG_00612","SJAG_03452"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97408],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046964"},{"annotations":[97409],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902557"},{"annotations":[102741],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008521"},{"annotations":[106941],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005471"},{"annotations":[98911],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140987"},{"annotations":[86921],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015228"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a purine ribonucleotide, any compound consisting of a purine ribonucleoside (a purine organic base attached to a ribose sugar) esterified with (ortho)phosphate, from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleotide transmembrane transporter activity","termid":"GO:0015216"},{"relation_name":"is_a","term_name":"carbohydrate derivative transmembrane transporter activity","termid":"GO:1901505"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00612":null,"SJAG_02050":null,"SJAG_03334":null,"SJAG_03452":null,"SJAG_04325":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"purine ribonucleotide transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0005346","terms_by_termid":{"GO:0005471":null,"GO:0008521":null,"GO:0015228":null,"GO:0046964":null,"GO:0140987":null,"GO:1902557":null}}


id: PBO:0089402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease H2 complex subunit Rnh201","termid":"PBO:0089402"}


id: PBO:0082797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the yeast dynactin complex; consisting of Nip100p, Jnm1p, and Arp1p; required for proper nuclear migration and spindle partitioning during mitotic anaphase B","termid":"PBO:0082797"}


id: PATO:0002152
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the side.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"splayed","termid":"PATO:0001785"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splayed lateral","termid":"PATO:0002152"}


id: GO:1900341
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of methane biosynthetic process from formic acid.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of methane biosynthetic process from formic acid","termid":"GO:1900339"},{"relation_name":"is_a","term_name":"positive regulation of alkane biosynthetic process","termid":"GO:1901579"},{"relation_name":"is_a","term_name":"positive regulation of cellular respiration","termid":"GO:1901857"},{"relation_name":"positively_regulates","term_name":"methane biosynthetic process from formic acid","termid":"GO:2001127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"positively_regulates","termid":"GO:0006091"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006091","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"positive regulation of methane biosynthetic process from formic acid","synonyms":[{"name":"activation of methane biosynthetic process from formic acid","type":"narrow"},{"name":"up regulation of methane biosynthetic process from formic acid","type":"exact"},{"name":"up-regulation of methane biosynthetic process from formic acid","type":"exact"},{"name":"upregulation of methane biosynthetic process from formic acid","type":"exact"}],"termid":"GO:1900341"}


id: PBO:0082000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger SWIM-type containing 1","termid":"PBO:0082000"}


id: MOD:01659
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that is produced by formation of an adduct with 1-amino-4-{[3-(ethenylsulfonyl)phenyl]amino}-9,10-dioxo-9,10-dihydroanthracene-2-sulfonate, Uniblue A.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Uniblue A derivatized residue","synonyms":[{"name":"1-amino-4-{[3-(ethenylsulfonyl)phenyl]amino}-9,10-dioxo-9,10-dihydroanthracene-2-sulfonic acid","type":"exact"},{"name":"1-amino-9,10-dioxo-4-{[3-(vinylsulfonyl)phenyl]amino}-9,10-dihydroanthracene-2-sulfonic acid","type":"exact"},{"name":"Uniblue A","type":"exact"},{"name":"UniblueARes","type":"exact"}],"termid":"MOD:01659"}


id: PBO:0068511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 101, pseudogene","termid":"PBO:0068511"}


id: PBO:0029910
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_sterol_level","termid":"PBO:0029910"}


id: PBO:0048004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FERM domain containing 4B","termid":"PBO:0048004"}


id: GO:0034308
data:
  {"annotated_genes":["SJAG_01970","SJAG_05006","SJAG_00827","SJAG_04282","SJAG_01414","SJAG_01742","SJAG_03370","SJAG_04866","SJAG_02047","SJAG_04067","SJAG_02420","SJAG_02406","SJAG_00381","SJAG_03743","SJAG_03786","SJAG_03822","SJAG_03538","SJAG_03362","SJAG_00240","SJAG_02421"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96917],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006068"},{"annotations":[110651,84623,94787,110652,94786],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019655"},{"annotations":[92647],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:2001172"},{"annotations":[85146,109729],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0090180"},{"annotations":[110052,103421,95576,112061,109641,90363,109635],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009228"},{"annotations":[58514,95578,65363],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006772"},{"annotations":[106494,95579,106493],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036172"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving primary alcohols. A primary alcohol is any alcohol in which a hydroxy group, -OH, is attached to a saturated carbon atom which has either three hydrogen atoms attached to it or only one other carbon atom and two hydrogen atoms attached to it.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol metabolic process","termid":"GO:0006066"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00240":null,"SJAG_00381":null,"SJAG_00827":null,"SJAG_01414":null,"SJAG_01742":null,"SJAG_01970":null,"SJAG_02047":null,"SJAG_02406":null,"SJAG_02420":null,"SJAG_02421":null,"SJAG_03362":null,"SJAG_03370":null,"SJAG_03538":null,"SJAG_03743":null,"SJAG_03786":null,"SJAG_03822":null,"SJAG_04067":null,"SJAG_04282":null,"SJAG_04866":null,"SJAG_05006":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"primary alcohol metabolic process","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"monohydric alcohol metabolic process","type":"exact"},{"name":"primary alcohol metabolism","type":"exact"}],"termid":"GO:0034308","terms_by_termid":{"GO:0006068":null,"GO:0006772":null,"GO:0009228":null,"GO:0019655":null,"GO:0036172":null,"GO:0090180":null,"GO:2001172":null}}


id: GO:0120202
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Stack of disc membranes located inside a rod photoreceptor outer segment, and containing densely packed molecules of rhodopsin photoreceptor proteins that traverse the lipid bilayer. It is thought that rod disc membranes arise as evaginations of the ciliary membrane near the base of the outer segment, which then become completely separated from the ciliary membrane, during the development of the rod outer segment.","definition_xrefs":["GOC:krc","GOC:pde","PMID:19501669","PMID:26574505","PMID:6771304"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle membrane","termid":"GO:0030659"},{"relation_name":"is_a","term_name":"photoreceptor disc membrane","termid":"GO:0097381"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0031410"],"is_obsolete":false,"name":"rod photoreceptor disc membrane","termid":"GO:0120202"}


id: GO:0001740
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A structure found in a female mammalian cell containing an unpaired X chromosome that has become densely heterochromatic, silenced and localized at the nuclear periphery.","definition_xrefs":["GOC:mr","GOC:hjd","NIF_Subcellular:sao1571698684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear chromosome","termid":"GO:0000228"},{"relation_name":"is_a","term_name":"X chromosome","termid":"GO:0000805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005694","GO:0005634"],"is_obsolete":false,"name":"Barr body","secondary_identifiers":["Wikipedia:Barr_body"],"termid":"GO:0001740"}


id: PBO:0036208
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3_acetylation_during_vegetative_growth","termid":"PBO:0036208"}


id: PBO:0076734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"t-complex 1 pseudogene 3","termid":"PBO:0076734"}


id: PBO:0003942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RRM-containing cyclophilin regulating transcription Rct1","termid":"PBO:0003942"}


id: PR:O94574
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1773.17c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94574"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-hydroxyacid dehydrogenase C1773.17c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1773.17c","synonyms":[{"name":"Spom972h-SPBC1773.17c","type":"exact"}],"termid":"PR:O94574"}


id: PR:Q12126
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cell division protein kinase 7 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03624"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase crk1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19F8.07","secondary_identifiers":["UniProtKB:Q12126"],"synonyms":[{"name":"Spom972h-CDK7","type":"exact"},{"name":"mitotic catastrophe suppressor 6 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q12126"}


id: PBO:0071129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 131","termid":"PBO:0071129"}


id: PBO:0052642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 10","termid":"PBO:0052642"}


id: PBO:0043580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type XII alpha 1 chain","termid":"PBO:0043580"}


id: GO:0035161
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation and/or maintenance of a lineage boundary between compartments in an imaginal disc that cells cannot cross, thus separating the populations of cells in each compartment.","definition_xrefs":["PMID:9374402","GOC:bf","PMID:10625531"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pattern specification process","termid":"GO:0007389"},{"relation_name":"part_of","term_name":"imaginal disc pattern formation","termid":"GO:0007447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"imaginal disc lineage restriction","termid":"GO:0035161"}


id: GO:2001056
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cysteine-type endopeptidase activity.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of endopeptidase activity","termid":"GO:0010950"},{"relation_name":"is_a","term_name":"regulation of cysteine-type endopeptidase activity","termid":"GO:2000116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cysteine-type endopeptidase activity","synonyms":[{"name":"positive regulation of lysosomal cysteine-type endopeptidase","type":"related"},{"name":"positive regulation of thiol endopeptidase activity","type":"exact"}],"termid":"GO:2001056"}


id: GO:0030304
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Stops, prevents or reduces the activity of the serine endopeptidase trypsin.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete trypsin inhibitor activity (obsolete GO:0030304)","synonyms":[{"name":"trypsin inhibitor activity","type":"exact"}],"termid":"GO:0030304"}


id: PBO:0072356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 42","termid":"PBO:0072356"}


id: PBO:0067099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 140, pseudogene","termid":"PBO:0067099"}


id: GO:0038195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by urokinase plasminogen activator binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:gap","PMID:9417082"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor signaling pathway","termid":"GO:0007166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"urokinase plasminogen activator signaling pathway","synonyms":[{"name":"uPA signaling pathway","type":"exact"}],"termid":"GO:0038195"}


id: PBO:0051945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ITPK1 antisense RNA 1","termid":"PBO:0051945"}


id: PR:O59729
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC3E7.09 gene.","definition_xrefs":["UniProtKB:O59729","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein slp1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3E7.09","synonyms":[{"name":"SUN-like protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPBC3E7.09","type":"exact"}],"termid":"PR:O59729"}


id: FYECO:0000296
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in medium containing glucose, salts, water and with phenylalanine as the nitrogen source.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose MM, phenylalanine nitrogen source","termid":"FYECO:0000296"}


id: PATO:0000848
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000848 relative auditory acuity (obsolete PATO:0000848)","termid":"PATO:0000848"}


id: MOD:01203
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to N6-[(pyrid-3-yl)acetyl]lysine.","definition_xrefs":["Unimod:25#K","PubMed:9276974"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyridylacetylated residue","termid":"MOD:00418"},{"relation_name":"is_a","term_name":"N6-acylated L-lysine","termid":"MOD:01875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N6-(pyridylacetyl)lysine","synonyms":[{"name":"Pyridylacetyl","type":"related"},{"name":"pyridylacetyl","type":"related"}],"termid":"MOD:01203"}


id: PBO:0067959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 261","termid":"PBO:0067959"}


id: FYPO:0003386
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of superoxide dismutase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal superoxide dismutase activity","termid":"FYPO:0003281"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0000707","FYPO:0005447","FYPO:0000661","FYPO:0001985","FYPO:0000002","FYPO:0000298"],"is_obsolete":false,"name":"increased superoxide dismutase activity","termid":"FYPO:0003386"}


id: GO:0160049
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cGAS/STING signaling pathway.","definition_xrefs":["PMID:29875158"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039532"},{"relation_name":"negatively_regulates","term_name":"cGAS/STING signaling pathway","termid":"GO:0140896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of cGAS/STING signaling pathway","termid":"GO:0160049"}


id: GO:0072194
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of smooth muscle in the kidney over time, from its formation to the mature structure.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"smooth muscle tissue development","termid":"GO:0048745"},{"relation_name":"part_of","term_name":"kidney development","termid":"GO:0001822"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"kidney smooth muscle tissue development","termid":"GO:0072194"}


id: GO:0000008
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A small disulfide-containing redox protein that serves as a general protein disulfide oxidoreductase. Interacts with a broad range of proteins by a redox mechanism, based on the reversible oxidation of 2 cysteine thiol groups to a disulfide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulfide and a dithiol.","definition_xrefs":["GOC:kd"],"gene_count":0,"genotype_count":0,"name":"obsolete thioredoxin (obsolete GO:0000008)","synonyms":[{"name":"thioredoxin","type":"exact"}],"termid":"GO:0000008"}


id: GO:0110147
data:
  {"annotated_genes":["SJAG_04896","SJAG_04679","SJAG_05338"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91496,92893,114990],"is_not":false,"summary":null,"term":"GO:0110147"}]},"cv_name":"biological_process","definition":"A process that contributes to the delivery of nickel ions to a target protein to facilitate its maturation.","definition_xrefs":["GOC:al","PMID:24115911"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein maturation","termid":"GO:0051604"}],"gene_count":3,"genes_by_uniquename":{"SJAG_04679":null,"SJAG_04896":null,"SJAG_05338":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0051604"],"is_obsolete":false,"name":"protein maturation by nickel ion transfer","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0110147","terms_by_termid":{"GO:0110147":null}}


id: PBO:0011496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bin3 family, methyltransferase (predicted)","termid":"PBO:0011496"}


id: GO:0047850
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: meso-2,6-diaminopimelate + H2O + NADP+ = L-2-amino-6-oxopimelate + H+ + NADPH + NH4.","definition_xrefs":["EC:1.4.1.16","RHEA:13561"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor","termid":"GO:0016639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"diaminopimelate dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R02755","MetaCyc:DIAMINOPIMELATE-DEHYDROGENASE-RXN"],"synonyms":[{"name":"meso-2,6-diaminoheptanedioate:NADP+ oxidoreductase (deaminating)","type":"related"},{"name":"meso-alpha,epsilon-diaminopimelate dehydrogenase activity","type":"related"},{"name":"meso-diaminopimelate D-dehydrogenase activity","type":"related"},{"name":"meso-diaminopimelate dehydrogenase activity","type":"related"}],"termid":"GO:0047850"}


id: GO:0046966
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a nuclear thyroid hormone receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear receptor binding","termid":"GO:0016922"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"nuclear thyroid hormone receptor binding","synonyms":[{"name":"ligand-dependent thyroid hormone receptor interactor activity","type":"narrow"},{"name":"thyroid hormone receptor binding","type":"broad"}],"termid":"GO:0046966"}


id: PBO:0075318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SOD1 divergent transcript","termid":"PBO:0075318"}


id: PBO:0044287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome X open reading frame 51A","termid":"PBO:0044287"}


id: GO:0044762
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont inhibits or disrupts the regulated release of a neurotransmitter from a cell in its host organism.","definition_xrefs":["PMID:1328520","PMID:7901002"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host neurotransmitter secretion","termid":"GO:0044079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"symbiont-mediated suppression of host neurotransmitter secretion","synonyms":[{"name":"negative regulation by symbiont of host neurotransmitter secretion","type":"exact"}],"termid":"GO:0044762"}


id: GO:0043822
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endonucleolytic cleavage of RNA, removing 21 and 42 nucleotides, respectively, from the 5'- and 3'-termini of a 5S-rRNA precursor.","definition_xrefs":["PMID:402365"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA endonuclease activity, producing 5'-phosphomonoesters","termid":"GO:0016891"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140098","GO:0003674","GO:0016788","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"ribonuclease M5 activity","secondary_identifiers":["MetaCyc:3.1.26.8-RXN","EC:3.1.26.8"],"synonyms":[{"name":"5S ribosomal RNA maturation endonuclease activity","type":"exact"},{"name":"5S ribosomal maturation nuclease activity","type":"related"},{"name":"RNase M5 activity","type":"related"}],"termid":"GO:0043822"}


id: GO:1900985
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of vindoline.","definition_xrefs":["GOC:TermGenie","GOC:yaf","PMID:12228585"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpenoid indole alkaloid biosynthetic process","termid":"GO:0009709"},{"relation_name":"is_a","term_name":"acetate ester biosynthetic process","termid":"GO:1900620"},{"relation_name":"is_a","term_name":"vindoline metabolic process","termid":"GO:1900983"},{"relation_name":"is_a","term_name":"organic heteropentacyclic compound biosynthetic process","termid":"GO:1901378"},{"relation_name":"is_a","term_name":"tertiary alcohol biosynthetic process","termid":"GO:1902645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0019748","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"vindoline biosynthetic process","secondary_identifiers":["MetaCyc:PWY-5292"],"synonyms":[{"name":"vindoline anabolism","type":"exact"},{"name":"vindoline biosynthesis","type":"exact"},{"name":"vindoline formation","type":"exact"},{"name":"vindoline synthesis","type":"exact"}],"termid":"GO:1900985"}


id: PBO:0066263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBMX pseudogene 3","termid":"PBO:0066263"}


id: PBO:0049618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 21","termid":"PBO:0049618"}


id: GO:0097202
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that initiates the activity of the inactive enzyme cysteine-type endopeptidase.","definition_xrefs":["GOC:mtg_apoptosis","PMID:21726810"],"direct_ancestors":[{"relation_name":"is_a","term_name":"zymogen activation","termid":"GO:0031638"},{"relation_name":"is_a","term_name":"positive regulation of cysteine-type endopeptidase activity","termid":"GO:2001056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051604","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"activation of cysteine-type endopeptidase activity","synonyms":[{"name":"activation of caspase activity","type":"narrow"},{"name":"activation of metacaspase activity","type":"related"}],"termid":"GO:0097202"}


id: FYPO:0003609
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of dehydrodolichyl diphosphate synthase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal dehydrodolichyl diphosphate synthase activity","termid":"FYPO:0003608"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000652","FYPO:0000654","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"decreased dehydrodolichyl diphosphate synthase activity","synonyms":[{"name":"reduced dehydrodolichyl diphosphate synthase activity","type":"exact"}],"termid":"FYPO:0003609"}


id: PR:Q9UTL3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ribose-5-phosphate isomerase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01935","PANTHER:PTHR11934:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribose-5-phosphate isomerase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC144.12","secondary_identifiers":["UniProtKB:Q9UTL3"],"synonyms":[{"name":"D-ribose-5-phosphate ketol-isomerase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Phosphoriboisomerase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-RPIA","type":"exact"}],"termid":"PR:Q9UTL3"}


id: MOD:00125
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to hypusine, N6-(4-amino-2-hydroxybutyl)-L-lysine.","definition_xrefs":["RESID:AA0116","DeltaMass:0","PubMed:8108861","PubMed:6806267","Unimod:379#K"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"L-deoxyhypusine","termid":"MOD:01880"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"},{"relation_name":"is_a","term_name":"4-aminobutylated residue","termid":"MOD:01884"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypusine","synonyms":[{"name":"(2S)-2-amino-6-([(2R)-4-amino-2-hydroxybutyl]amino)hexanoic acid","type":"exact"},{"name":"(2S,9R)-2,11-diazanyl-9-hydroxy-7-azaundecanoic acid","type":"exact"},{"name":"(2S,9R)-hypusine","type":"exact"},{"name":"2-azanyl-6-[(4-azanyl-2-hydroxybutyl)azanyl]hexanoic acid","type":"exact"},{"name":"Hypu","type":"exact"},{"name":"Hypusine","type":"related"},{"name":"L-hypusine","type":"exact"},{"name":"MOD_RES Hypusine","type":"exact"},{"name":"N-(4-NH2-2-OH-butyl)- (of Lysine)","type":"exact"},{"name":"N6-(4-amino-2-hydroxybutyl)-L-lysine","type":"exact"},{"name":"hypusine","type":"related"}],"termid":"MOD:00125"}


id: PBO:0070938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 46","termid":"PBO:0070938"}


id: PBO:0053025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine aminopeptidase 3 pseudogene 1","termid":"PBO:0053025"}


id: PBO:0005814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F0-ATPase delta subunit (predicted)","termid":"PBO:0005814"}


id: PBO:0091823
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"not functionally complemented by A. thaliana cdc2aAt","termid":"PBO:0091823"}


id: GO:0047700
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + cellobiose = ADP + 6-phospho-beta-D-glucosyl-(1,4)-D-glucose.","definition_xrefs":["MetaCyc:BETA-GLUCOSIDE-KINASE-RXN","EC:2.7.1.85"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016301","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"beta-glucoside kinase activity","secondary_identifiers":["RHEA:21944"],"synonyms":[{"name":"ATP:cellobiose 6-phosphotransferase activity","type":"related"},{"name":"b-glucoside kinase activity","type":"exact"},{"name":"beta-D-glucoside kinase (phosphorylating)","type":"related"}],"termid":"GO:0047700"}


id: PBO:0012062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"negative regulator of Ofd1, Nro1","termid":"PBO:0012062"}


id: PBO:0074865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 50A","termid":"PBO:0074865"}


id: GO:0045454
data:
  {"annotated_genes":["SJAG_04632","SJAG_01199","SJAG_01162","SJAG_04399","SJAG_04953","SJAG_03623","SJAG_01216","SJAG_03653","SJAG_03166","SJAG_00614","SJAG_00668","SJAG_02515"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78192,85505,96048,96207,98918,101072,101253,102411,104875,106136,112765,113387],"is_not":false,"summary":null,"term":"GO:0045454"}]},"cv_name":"biological_process","definition":"Any process that maintains the redox environment of a cell or compartment within a cell.","definition_xrefs":["GOC:ai","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular homeostasis","termid":"GO:0019725"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00614":null,"SJAG_00668":null,"SJAG_01162":null,"SJAG_01199":null,"SJAG_01216":null,"SJAG_02515":null,"SJAG_03166":null,"SJAG_03623":null,"SJAG_03653":null,"SJAG_04399":null,"SJAG_04632":null,"SJAG_04953":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell redox homeostasis","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0030503","GO:0045867","GO:0045868","Wikipedia:Redox"],"synonyms":[{"name":"regulation of cell redox homeostasis","type":"related"},{"name":"regulation of redox homeostasis","type":"broad"}],"termid":"GO:0045454","terms_by_termid":{"GO:0045454":null}}


id: PBO:0054955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2369","termid":"PBO:0054955"}


id: GO:0031765
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 2 galanin receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galanin receptor binding","termid":"GO:0031763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"type 2 galanin receptor binding","synonyms":[{"name":"type 2 galanin receptor ligand","type":"narrow"}],"termid":"GO:0031765"}


id: GO:1990701
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the ERGIC membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["GOC:bhm","PMID:24119662","PMID:16038056"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane (obsolete GO:1990701)","synonyms":[{"name":"integral component of ER-Golgi intermediate compartment membrane","type":"exact"},{"name":"integral component of ERGIC membrane","type":"exact"},{"name":"integral component of endoplasmic reticulum-Golgi intermediate compartment membrane","type":"exact"}],"termid":"GO:1990701"}


id: PBO:0066181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBM5 antisense RNA 1","termid":"PBO:0066181"}


id: PBO:0083649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endo-beta-1,3-glucanase; major protein of the cell wall, involved in cell wall maintenance; involved in incorporation of newly synthesized mannoprotein molecules into the cell wall","termid":"PBO:0083649"}


id: PBO:0034500
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_activation_of_meiosis_I_spindle_assembly_checkpoint","termid":"PBO:0034500"}


id: PBO:0083182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the ORF YDL025C; identified by gene-trapping, microarray expression analysis, and genome-wide homology searching","termid":"PBO:0083182"}


id: FYPO:0005133
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the ascospore wall is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during meiotic cell cycle","termid":"FYPO:0004094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"decreased protein localization to ascospore wall","synonyms":[{"name":"decreased protein localisation to ascospore wall","type":"exact"},{"name":"decreased protein localization to spore wall","type":"exact"},{"name":"reduced protein localization to ascospore wall","type":"exact"}],"termid":"FYPO:0005133"}


id: GO:0015796
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of galactitol across a membrane. Galactitol is the hexitol derived by the reduction of the aldehyde group of either D- or L-galactose.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyol transmembrane transport","termid":"GO:0015791"},{"relation_name":"is_a","term_name":"carbohydrate transmembrane transport","termid":"GO:0034219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"galactitol transmembrane transport","synonyms":[{"name":"galactitol transport","type":"broad"}],"termid":"GO:0015796"}


id: PBO:0070617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 like 1 pseudogene 1","termid":"PBO:0070617"}


id: PBO:0091251
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"not functionally complemented by S. cerevisiae RAD5","termid":"PBO:0091251"}


id: PBO:0056632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 12","termid":"PBO:0056632"}


id: PBO:0046954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAM76A pseudogene 1","termid":"PBO:0046954"}


id: PBO:0057652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1245a","termid":"PBO:0057652"}


id: GO:1900581
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of (17Z)-protosta-17(20),24-dien-3beta-ol.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid biosynthetic process","termid":"GO:0006694"},{"relation_name":"is_a","term_name":"tetracyclic triterpenoid biosynthetic process","termid":"GO:0010686"},{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"},{"relation_name":"is_a","term_name":"(17Z)-protosta-17(20),24-dien-3beta-ol metabolic process","termid":"GO:1900579"},{"relation_name":"is_a","term_name":"secondary alcohol biosynthetic process","termid":"GO:1902653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0019748","GO:0008150"],"is_obsolete":false,"name":"(17Z)-protosta-17(20),24-dien-3beta-ol biosynthetic process","synonyms":[{"name":"(17Z)-protosta-17(20),24-dien-3beta-ol anabolism","type":"exact"},{"name":"(17Z)-protosta-17(20),24-dien-3beta-ol biosynthesis","type":"exact"},{"name":"(17Z)-protosta-17(20),24-dien-3beta-ol formation","type":"exact"},{"name":"(17Z)-protosta-17(20),24-dien-3beta-ol synthesis","type":"exact"}],"termid":"GO:1900581"}


id: PBO:0026854
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_chromatin_at_centromere_central_core","termid":"PBO:0026854"}


id: PBO:0055419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2849","termid":"PBO:0055419"}


id: PBO:0041218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1","termid":"PBO:0041218"}


id: PR:P78871
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rst2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P78871"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein rst2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F12.02","synonyms":[{"name":"Spom972h-rst2","type":"exact"}],"termid":"PR:P78871"}


id: PBO:0038441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha and gamma adaptin binding protein","termid":"PBO:0038441"}


id: PBO:0061242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOP56 ribonucleoprotein pseudogene 3","termid":"PBO:0061242"}


id: PBO:0040907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BMS1 pseudogene 11","termid":"PBO:0040907"}


id: PBO:0080076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP38 divergent transcript","termid":"PBO:0080076"}


id: PR:Q09806
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC2G11.04 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09806"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C2G11.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2G11.04","synonyms":[{"name":"Spom972h-SPAC2G11.04","type":"exact"}],"termid":"PR:Q09806"}


id: GO:0005353
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of fructose from one side of a membrane to the other. Fructose exists in a open chain form or as a ring compound. D-fructose is the sweetest of the sugars and is found free in a large number of fruits and honey.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose transmembrane transporter activity","termid":"GO:0015149"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"fructose transmembrane transporter activity","secondary_identifiers":["GO:0015585","GO:0019192","Reactome:R-HSA-189222"],"synonyms":[{"name":"fructose permease activity","type":"exact"},{"name":"fructose porter activity","type":"exact"}],"termid":"GO:0005353"}


id: PBO:0018225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sec14 cytosolic factor family, glycerophospholipid-transfer protein (predicted)","termid":"PBO:0018225"}


id: PBO:0052445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kruppel like factor 2 pseudogene 2","termid":"PBO:0052445"}


id: GO:0019024
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A viral genome composed of single stranded RNA of either positive or negative sense.","definition_xrefs":["ISBN:0121585336"],"gene_count":0,"genotype_count":0,"name":"obsolete ssRNA viral genome (obsolete GO:0019024)","termid":"GO:0019024"}


id: PBO:0038836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAMTS7 pseudogene 3","termid":"PBO:0038836"}


id: PBO:0067428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 547, pseudogene","termid":"PBO:0067428"}


id: PBO:0047795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead box G1","termid":"PBO:0047795"}


id: PR:000036914
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine/threonine-protein kinase gad8 that is encoded in the genome of Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase gad8 (Schizosaccharomyces pombe)","pombase_gene_id":"SPCC24B10.07","synonyms":[{"name":"Spom-gad8","type":"exact"}],"termid":"PR:000036914"}


id: PBO:0059710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO2 pseudogene 18","termid":"PBO:0059710"}


id: GO:0033938
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of (1->6) linkages between alpha-L-fucose and N-acetyl-D-glucosamine in glycopeptides such as immunoglobulin G glycopeptide and fucosyl-asialo-agalacto-fetuin.","definition_xrefs":["EC:3.2.1.127"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-L-fucosidase activity","termid":"GO:0004560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016798","GO:0003674"],"is_obsolete":false,"name":"1,6-alpha-L-fucosidase activity","secondary_identifiers":["MetaCyc:3.2.1.127-RXN"],"synonyms":[{"name":"1,6-L-fucosyl-N-acetyl-D-glucosaminylglycopeptide fucohydrolase activity","type":"related"}],"termid":"GO:0033938"}


id: GO:0006128
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete oxidized glutathione reduction (obsolete GO:0006128)","synonyms":[{"name":"oxidized glutathione reduction","type":"exact"}],"termid":"GO:0006128"}


id: GO:0035488
data:
  {"annotated_genes":["SJAG_00634"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94247],"is_not":false,"summary":null,"term":"GO:0035488"}]},"cv_name":"molecular_function","definition":"Binding to a double-stranded DNA region containing a C/T mispair.","definition_xrefs":["GOC:jh","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatched DNA binding","termid":"GO:0030983"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0003677"],"is_obsolete":false,"name":"cytosine/thymine mispair binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"C/T mispair binding","type":"exact"},{"name":"T/C mispair binding","type":"exact"},{"name":"thymine/cytosine mispair binding","type":"exact"}],"termid":"GO:0035488","terms_by_termid":{"GO:0035488":null}}


id: PBO:0058831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 8061","termid":"PBO:0058831"}


id: GO:0034780
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glyphosate + OH- = glyoxylate + aminomethylphosphonic acid + H+ + 2 e-.","definition_xrefs":["UM-BBD_reactionID:r0073"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors","termid":"GO:0016645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"glyphosate dehydrogenase activity","termid":"GO:0034780"}


id: GO:0006727
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ommochromes, any of a large group of natural polycyclic pigments commonly found in the Arthropoda, particularly in the ommatidia of the compound eye.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye pigment biosynthetic process","termid":"GO:0006726"},{"relation_name":"is_a","term_name":"ocellus pigment biosynthetic process","termid":"GO:0008055"},{"relation_name":"is_a","term_name":"ommochrome metabolic process","termid":"GO:0046152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"ommochrome biosynthetic process","synonyms":[{"name":"ommochrome anabolism","type":"exact"},{"name":"ommochrome biosynthesis","type":"exact"},{"name":"ommochrome formation","type":"exact"},{"name":"ommochrome synthesis","type":"exact"}],"termid":"GO:0006727"}


id: PBO:0040403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting V1 subunit G1 pseudogene 4","termid":"PBO:0040403"}


id: PBO:0031091
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mitotic_chromosome_fragmentation_upon_segregation","termid":"PBO:0031091"}


id: FYPO:0001430
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the mitotic cell cycle is arrested before cells have replicated genomic DNA, under conditions where arrest does not normally occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"increased number of cells with 1C DNA content","termid":"FYPO:0001974"},{"relation_name":"is_a","term_name":"abnormally arrested mitotic cell cycle progression","termid":"FYPO:0000502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal mitotic cell cycle arrest with unreplicated DNA","synonyms":[{"name":"abnormal cell cycle arrest with unreplicated DNA during mitotic cell cycle","type":"related"},{"name":"abnormal mitotic cell cycle arrest with 1C DNA content","type":"exact"},{"name":"abnormal mitotic cell cycle arrest with unreplicated DNA during vegetative growth","type":"exact"}],"termid":"FYPO:0001430"}


id: PBO:0074019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 13","termid":"PBO:0074019"}


id: PBO:0002681
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human CDC14","termid":"PBO:0002681"}


id: PBO:0055655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3095","termid":"PBO:0055655"}


id: PBO:0083980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glucosyl transferase; involved in N-linked glycosylation; adds glucose to the dolichol-linked oligosaccharide precursor prior to transfer to protein during lipid-linked oligosaccharide biosynthesis; similar to Alg6p; human homolog ALG8 can complement yeast null mutant","termid":"PBO:0083980"}


id: PBO:0082155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Adaptor protein involved in vesicle-mediated vacuolar protein sorting; multivalent adaptor protein; facilitates vesicle-mediated vacuolar protein sorting by ensuring high-fidelity vesicle docking and fusion, which are essential for targeting of vesicles to the endosome; required for vacuole inheritance","termid":"PBO:0082155"}


id: PR:O94311
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC215.06c gene.","definition_xrefs":["UniProtKB:O94311","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0743 protein C215.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC215.06c","synonyms":[{"name":"Spom972h-SPBC215.06c","type":"exact"}],"termid":"PR:O94311"}


id: GO:0038032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The signaling process in which G protein-coupled receptor signaling is brought to an end. For example, through the action of GTPase-activating proteins (GAPs) that act to accelerate hydrolysis of GTP to GDP on G-alpha proteins, thereby terminating the transduced signal.","definition_xrefs":["GOC:signaling","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"termination of signal transduction","termid":"GO:0023021"},{"relation_name":"is_a","term_name":"negative regulation of G protein-coupled receptor signaling pathway","termid":"GO:0045744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"termination of G protein-coupled receptor signaling pathway","synonyms":[{"name":"termination of G-protein coupled receptor signaling pathway","type":"exact"},{"name":"termination of G-protein coupled receptor signalling pathway","type":"exact"},{"name":"termination of GPCR signaling pathway","type":"exact"}],"termid":"GO:0038032"}


id: PBO:0056304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase kinase 1","termid":"PBO:0056304"}


id: PBO:0052070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine acetyltransferase 14","termid":"PBO:0052070"}


id: GO:0004731
data:
  {"annotated_genes":["SJAG_01359","SJAG_03881"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87157],"is_not":false,"summary":null,"term":"GO:0004731"},{"annotations":[85877],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0017061"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.","definition_xrefs":["EC:2.4.2.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01359":null,"SJAG_03881":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016757"],"is_obsolete":false,"name":"purine-nucleoside phosphorylase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PNP-RXN","Reactome:R-HSA-112033","RHEA:19805","Reactome:R-HSA-9735775","Reactome:R-HSA-74242","Reactome:R-HSA-112034","Reactome:R-HSA-74249","Reactome:R-HSA-9755044","Reactome:R-HSA-9735789"],"synonyms":[{"name":"PNPase activity","type":"related"},{"name":"PUNPI","type":"related"},{"name":"PUNPII","type":"related"},{"name":"inosine phosphorylase activity","type":"narrow"},{"name":"inosine-guanosine phosphorylase activity","type":"related"},{"name":"purine deoxynucleoside phosphorylase activity","type":"related"},{"name":"purine deoxyribonucleoside phosphorylase activity","type":"related"},{"name":"purine nucleoside phosphorylase activity","type":"related"},{"name":"purine ribonucleoside phosphorylase activity","type":"related"},{"name":"purine-nucleoside:phosphate ribosyltransferase activity","type":"related"}],"termid":"GO:0004731","terms_by_termid":{"GO:0004731":null,"GO:0017061":null}}


id: PBO:0083956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDP dissociation inhibitor; regulates vesicle traffic in secretory pathways by regulating the dissociation of GDP from the Sec4/Ypt/rab family of GTP binding proteins","termid":"PBO:0083956"}


id: PBO:0031336
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_benomyl","termid":"PBO:0031336"}


id: PBO:0004480
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sjogren's syndrome","termid":"PBO:0004480"}


id: GO:0052916
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + guanosine(1835) in 23S rRNA = N(2)-methylguanosine(1835) in 23S rRNA + S-adenosyl-L-homocysteine.","definition_xrefs":["EC:2.1.1.174"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA (guanine-N2-)-methyltransferase activity","termid":"GO:0008990"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016741","GO:0016740","GO:0140098"],"is_obsolete":false,"name":"23S rRNA (guanine(1835)-N(2))-methyltransferase activity","secondary_identifiers":["RHEA:42744","MetaCyc:RXN-11635","KEGG_REACTION:R07234"],"termid":"GO:0052916"}


id: GO:0043666
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of phosphoprotein phosphatase activity, the catalysis of the hydrolysis of phosphate from a phosphoprotein.","definition_xrefs":["PMID:11724821","GOC:jp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phosphatase activity","termid":"GO:0010921"},{"relation_name":"is_a","term_name":"regulation of protein dephosphorylation","termid":"GO:0035304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of phosphoprotein phosphatase activity","secondary_identifiers":["GO:0032512","GO:0034047"],"synonyms":[{"name":"regulation of calcineurin activity","type":"narrow"},{"name":"regulation of protein phosphatase 3 activity","type":"related"},{"name":"regulation of protein phosphatase type 2 activity","type":"related"},{"name":"regulation of protein phosphatase type 2A activity","type":"narrow"},{"name":"regulation of protein phosphatase type 2B activity","type":"narrow"}],"termid":"GO:0043666"}


id: PATO:0000982
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a liquid (as by osmosis or diffusion).","definition_xrefs":["Biology-online:Biology-online"],"direct_ancestors":[{"relation_name":"is_a","term_name":"permeability","termid":"PATO:0000970"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"permeable","synonyms":[{"name":"porous","type":"related"}],"termid":"PATO:0000982"}


id: RO:0002243
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A broad relationship between an exposure event or process and the course takes from the source to the target.","direct_ancestors":[{"relation_name":"is_a","term_name":"related_via_exposure_to","termid":"RO:0002244"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_exposure_transport_path","termid":"RO:0002243"}


id: PBO:0072639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA 3'-terminal phosphate cyclase","termid":"PBO:0072639"}


id: FYPO:0007525
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of ribosome binding by a gene product (usually a protein) in a mutant is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah","PMID:19625445"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652"],"is_obsolete":false,"name":"decreased ribosome binding","synonyms":[{"name":"reduced ribosome binding","type":"exact"}],"termid":"FYPO:0007525"}


id: PBO:0034282
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-existence_starts_with","termid":"PBO:0034282"}


id: PBO:0071471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32 pseudogene 12","termid":"PBO:0071471"}


id: PBO:0052638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 6","termid":"PBO:0052638"}


id: PBO:0017832
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Suppressor of Cdc Four","termid":"PBO:0017832"}


id: GO:0050168
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + pentanamide = NH4 + valerate.","definition_xrefs":["RHEA:10000","EC:3.5.1.50"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016810"],"is_obsolete":false,"name":"pentanamidase activity","secondary_identifiers":["KEGG_REACTION:R02938","MetaCyc:PENTANAMIDASE-RXN"],"synonyms":[{"name":"pentanamide amidohydrolase activity","type":"related"},{"name":"valeramidase activity","type":"related"}],"termid":"GO:0050168"}


id: PBO:0002297
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.3.1.37","termid":"PBO:0002297"}


id: GO:0043560
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an insulin receptor substrate (IRS) protein, an adaptor protein that bind to the transphosphorylated insulin and insulin-like growth factor receptors, are themselves phosphorylated and in turn recruit SH2 domain-containing signaling molecules to form a productive signaling complex.","definition_xrefs":["PMID:12829233"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"insulin receptor substrate binding","synonyms":[{"name":"IRS [protein] binding","type":"exact"},{"name":"IRS binding","type":"exact"},{"name":"insulin receptor substrate [protein] binding","type":"exact"}],"termid":"GO:0043560"}


id: FYPO:0003816
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"Auxotrophy in which a cell requires histidine or lysine in the medium for vegetative cell growth.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxotrophy","termid":"FYPO:0000128"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"growth auxotrophic for histidine or lysine","synonyms":[{"name":"growth auxotrophic for histidine or lysine during mitotic cell cycle","type":"related"},{"name":"growth auxotrophic for histidine or lysine during vegetative growth","type":"exact"},{"name":"growth auxotrophic for lysine or histidine","type":"exact"},{"name":"histidine or lysine auxotrophy","type":"exact"}],"termid":"FYPO:0003816"}


id: PBO:0109455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1341, pseudogene","termid":"PBO:0109455"}


id: PR:Q01682
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pho4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q01682"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiamine-repressible acid phosphatase pho4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC428.03c","synonyms":[{"name":"Spom972h-pho4","type":"exact"}],"termid":"PR:Q01682"}


id: GO:0030220
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which platelets bud from long processes extended by megakaryocytes.","definition_xrefs":["GOC:mah","ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myeloid cell differentiation","termid":"GO:0030099"},{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"platelet morphogenesis","termid":"GO:0036344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"platelet formation","synonyms":[{"name":"platelet extrusion","type":"exact"}],"termid":"GO:0030220"}


id: PBO:0073544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain and tetratricopeptide repeats 2","termid":"PBO:0073544"}


id: GO:0099009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The circularization of a viral genome following infection of a host cell. This is common amongst bacterial viruses to protect the viral genome ends from nucleases, to convert the linear genome to an integrative precursor or to give rise to the replicative form of the genome. It can be mediated by covalent closure of the DNA sticky ends, recombinaison between redundant terminal sequences or via the binding of a protein at the viral DNA extremities.","definition_xrefs":["PMID:19523475","PMID:319596","PMID:11894948","PMID:15489417","VZ:3968"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral genome circularization","termid":"GO:0099009"}


id: GO:0002791
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of peptide secretion.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of secretion","termid":"GO:0051046"},{"relation_name":"is_a","term_name":"regulation of peptide transport","termid":"GO:0090087"},{"relation_name":"regulates","term_name":"peptide secretion","termid":"GO:0002790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of peptide secretion","termid":"GO:0002791"}


id: FYPO:0004661
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of tyrosine residues of one or more specific proteins is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete normal protein tyrosine phosphorylation during vegetative growth (obsolete FYPO:0004661)","synonyms":[{"name":"normal protein tyrosine phosphorylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004661"}


id: GO:0046985
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of macromolecule biosynthetic process","termid":"GO:0010557"},{"relation_name":"is_a","term_name":"regulation of hemoglobin biosynthetic process","termid":"GO:0046984"},{"relation_name":"is_a","term_name":"positive regulation of protein metabolic process","termid":"GO:0051247"},{"relation_name":"positively_regulates","term_name":"hemoglobin biosynthetic process","termid":"GO:0042541"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hemoglobin biosynthetic process","synonyms":[{"name":"activation of hemoglobin biosynthetic process","type":"narrow"},{"name":"positive regulation of haemoglobin biosynthesis","type":"exact"},{"name":"positive regulation of haemoglobin biosynthetic process","type":"exact"},{"name":"positive regulation of hemoglobin anabolism","type":"exact"},{"name":"positive regulation of hemoglobin biosynthesis","type":"exact"},{"name":"positive regulation of hemoglobin formation","type":"exact"},{"name":"positive regulation of hemoglobin synthesis","type":"exact"},{"name":"stimulation of hemoglobin biosynthetic process","type":"narrow"},{"name":"up regulation of hemoglobin biosynthetic process","type":"exact"},{"name":"up-regulation of hemoglobin biosynthetic process","type":"exact"},{"name":"upregulation of hemoglobin biosynthetic process","type":"exact"}],"termid":"GO:0046985"}


id: GO:1902399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any detection of stimulus that is involved in G1 DNA damage checkpoint.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete detection of stimulus involved in G1 DNA damage checkpoint (obsolete GO:1902399)","synonyms":[{"name":"detection of stimulus involved in G1/S DNA damage checkpoint","type":"exact"},{"name":"perception of stimulus involved in G1 DNA damage checkpoint","type":"related"},{"name":"perception of stimulus involved in G1/S DNA damage checkpoint","type":"related"},{"name":"stimulus detection involved in G1 DNA damage checkpoint","type":"exact"},{"name":"stimulus detection involved in G1/S DNA damage checkpoint","type":"exact"},{"name":"stimulus sensing involved in G1 DNA damage checkpoint","type":"related"},{"name":"stimulus sensing involved in G1/S DNA damage checkpoint","type":"related"}],"termid":"GO:1902399"}


id: PBO:0081616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 544","termid":"PBO:0081616"}


id: GO:0061354
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors including C-Jun N-terminal kinase (JNK) to modulate cytoskeletal elements and control cell polarity that contributes to the shaping of the pericardium.","definition_xrefs":["GOC:dph","GOC:mtg_heart","PMID:19056682"],"direct_ancestors":[{"relation_name":"is_a","term_name":"planar cell polarity pathway involved in heart morphogenesis","termid":"GO:0061346"},{"relation_name":"part_of","term_name":"pericardium morphogenesis","termid":"GO:0003344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"planar cell polarity pathway involved in pericardium morphogenesis","termid":"GO:0061354"}


id: FYPO:0000560
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which re-entry into the mitotic cell cycle after pheromone arrest is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell cycle process","termid":"FYPO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal re-entry into mitotic cell cycle after pheromone arrest","synonyms":[{"name":"normal recovery from pheromone-induced cell cycle arrest","type":"exact"},{"name":"recovery from pheromone-induced cell cycle arrest: normal","type":"related"}],"termid":"FYPO:0000560"}


id: GO:0021979
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The differentiation of cells that will contribute to the structure and function of the hypothalamus.","definition_xrefs":["GOC:jid","GOC:mgi_curators","GOC:dph","GOC:dgh","GO_REF:0000021","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"hypothalamus development","termid":"GO:0021854"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hypothalamus cell differentiation","termid":"GO:0021979"}


id: PBO:0045394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"developmental pluripotency associated 2 pseudogene 1","termid":"PBO:0045394"}


id: GO:0005289
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of arginine from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations.","definition_xrefs":["GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"high-affinity basic amino acid transmembrane transporter activity","termid":"GO:0005287"},{"relation_name":"is_a","term_name":"L-arginine transmembrane transporter activity","termid":"GO:0061459"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"high-affinity L-arginine transmembrane transporter activity","synonyms":[{"name":"high affinity arginine transmembrane transporter activity","type":"exact"},{"name":"high-affinity arginine transmembrane transporter activity","type":"exact"},{"name":"high-affinity arginine transporter activity","type":"broad"}],"termid":"GO:0005289"}


id: PBO:0058181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4475","termid":"PBO:0058181"}


id: PBO:0030335
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-phosphatidylserine_absent_from_cell","termid":"PBO:0030335"}


id: GO:0042163
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to the beta subunit of interleukin-12.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interleukin-12 binding","termid":"GO:0019972"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"interleukin-12 beta subunit binding","synonyms":[{"name":"CLMFp40 binding","type":"exact"},{"name":"IL-12B binding","type":"exact"},{"name":"IL-12p40 binding","type":"exact"},{"name":"NKSFp40 binding","type":"exact"}],"termid":"GO:0042163"}


id: GO:0033381
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of the protease granzyme B to a location within a secretory granule in a T cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of protease localization to T cell secretory granule","termid":"GO:0033378"},{"relation_name":"part_of","term_name":"granzyme B localization to T cell secretory granule","termid":"GO:0033380"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"establishment of granzyme B localization to T cell secretory granule","synonyms":[{"name":"T-lymphocyte secretory granule storage of granzyme B","type":"related"},{"name":"establishment of granzyme B localisation in T cell secretory granule","type":"exact"},{"name":"establishment of granzyme B localization in T cell secretory granule","type":"exact"},{"name":"establishment of granzyme B localization in T lymphocyte secretory granule","type":"exact"},{"name":"establishment of granzyme B localization in T-cell secretory granule","type":"exact"},{"name":"establishment of granzyme B localization in T-lymphocyte secretory granule","type":"exact"}],"termid":"GO:0033381"}


id: PBO:0003087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication factor A subunit Ssb1","termid":"PBO:0003087"}


id: PBO:0082475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cAMP-dependent protein kinase catalytic subunit; promotes vegetative growth in response to nutrients via the Ras-cAMP signaling pathway; partially redundant with Tpk1p and Tpk3p; localizes to P-bodies during stationary phase; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0082475"}


id: GO:0071967
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glucosyl-heptosyl2-KDO2-lipid A-phosphate + ADP-L-glycero-beta-D-manno-heptose = glucosyl-heptosyl3-KDO2-lipid A-phosphate + ADP + H+.","definition_xrefs":["MetaCyc:RXN0-5122"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipopolysaccharide heptosyltransferase activity","termid":"GO:0008920"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016757"],"is_obsolete":false,"name":"lipopolysaccharide core heptosyltransferase activity","secondary_identifiers":["RHEA:29923"],"synonyms":[{"name":"LPS core heptosyltransferase activity","type":"exact"}],"termid":"GO:0071967"}


id: PBO:0048062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin heavy chain 1 pseudogene 11","termid":"PBO:0048062"}


id: GO:0047066
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a hydroperoxy polyunsaturated fatty acid + 2 glutathione = a hydroxy polyunsaturated fatty acid + glutathione disulfide + H2O.","definition_xrefs":["PMID:8617728","RHEA:19057","PMID:3978121"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peroxidase activity","termid":"GO:0004601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"phospholipid-hydroperoxide glutathione peroxidase activity","secondary_identifiers":["Reactome:R-HSA-9020273","Reactome:R-HSA-9020271","MetaCyc:1.11.1.12-RXN","Reactome:R-HSA-9018868","Reactome:R-HSA-9018895","EC:1.11.1.12"],"synonyms":[{"name":"hydroperoxide glutathione peroxidase activity","type":"related"},{"name":"peroxidation-inhibiting protein activity","type":"related"},{"name":"phospholipid hydroperoxide glutathione peroxidase activity","type":"related"}],"termid":"GO:0047066"}


id: PR:Q9USV1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sfr1 gene.","definition_xrefs":["UniProtKB:Q9USV1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"swi5-dependent recombination DNA repair protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC28F2.07","synonyms":[{"name":"DNA repair protein dds20 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-sfr1","type":"exact"},{"name":"meiotically up-regulated gene 13 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USV1"}


id: PBO:0044206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cathepsin L pseudogene 4","termid":"PBO:0044206"}


id: PR:O94448
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A CAAX prenyl protease 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00351","PANTHER:PTHR13046:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CAAX prenyl protease 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1687.02","secondary_identifiers":["UniProtKB:O94448"],"synonyms":[{"name":"PPSEP 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-RCE1","type":"exact"},{"name":"prenyl protein-specific endoprotease 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94448"}


id: FYPO:0005527
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the formation of chromatin knobs in subtelomeric regions is normal (i.e. indistinguishable from wild type). Chromatin knobs are highly condensed chromatin bodies formed from subtelomeric heterochromatin (observed on chromosomes 1 and 2).","definition_xrefs":["PMID:26205977","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal chromatin organization during vegetative growth","termid":"FYPO:0002891"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal subtelomeric chromatin knob formation","synonyms":[{"name":"normal frequency of knob-containing nuclei","type":"related"},{"name":"normal subtelomeric chromatin condensation","type":"broad"},{"name":"normal subtelomeric chromatin knob assembly","type":"exact"}],"termid":"FYPO:0005527"}


id: GO:0031608
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The subunits forming the inner ring of the core complex of a proteasome located in the endoplasmic reticulum of a cell.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete ER proteasome core complex, beta-subunit complex (obsolete GO:0031608)","termid":"GO:0031608"}


id: PR:O74841
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An FAD synthase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR23293:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAD synthase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1235.04c","secondary_identifiers":["UniProtKB:O74841"],"synonyms":[{"name":"FAD pyrophosphorylase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"FMN adenylyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-FLAD1","type":"exact"},{"name":"flavin adenine dinucleotide synthase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74841"}


id: FYPO:0004834
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a phosphatase activity is increased during a cellular response to adenine starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased phosphatase activity","termid":"FYPO:0004415"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0001985","FYPO:0000652","FYPO:0000661","FYPO:0000707"],"is_obsolete":false,"name":"increased phosphatase activity during cellular response to adenine starvation","synonyms":[{"name":"increased phosphatase activity during adenine starvation","type":"exact"}],"termid":"FYPO:0004834"}


id: GO:0052635
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a C-20 gibberellin + 2-oxoglutarate + O2 = a C-20 2-beta-hydroxygibberellin + succinate + CO2. C-20 gibberellin refers to a gibberellin with twenty carbons.","definition_xrefs":["EC:1.14.11.13","GOC:kad"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gibberellin 2-beta-dioxygenase activity","termid":"GO:0045543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"C-20 gibberellin 2-beta-dioxygenase activity","synonyms":[{"name":"(C-20 gibberellin-1),2-oxoglutarate:oxygen oxidoreductase (2beta-hydroxylating)","type":"exact"},{"name":"C(20) gibberellin 2-oxidase activity","type":"exact"},{"name":"C-20 GA 2-oxidase activity","type":"exact"},{"name":"C-20 gibberellin 2-beta-hydroxylase activity","type":"exact"},{"name":"C-20 gibberellin 2-oxidase activity","type":"exact"},{"name":"C-20 gibberellin 2beta-dioxygenase activity","type":"exact"},{"name":"C-20 gibberellin 2beta-hydroxylase activity","type":"exact"}],"termid":"GO:0052635"}


id: PBO:0070798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 28","termid":"PBO:0070798"}


id: PBO:0060464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NALCN channel auxiliary factor 1","termid":"PBO:0060464"}


id: PBO:0041868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caspase 16, pseudogene","termid":"PBO:0041868"}


id: GO:2000110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of macrophage apoptotic process.","definition_xrefs":["GOC:BHF","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of myeloid cell apoptotic process","termid":"GO:0033033"},{"relation_name":"is_a","term_name":"negative regulation of leukocyte apoptotic process","termid":"GO:2000107"},{"relation_name":"is_a","term_name":"regulation of macrophage apoptotic process","termid":"GO:2000109"},{"relation_name":"negatively_regulates","term_name":"macrophage apoptotic process","termid":"GO:0071888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of macrophage apoptotic process","synonyms":[{"name":"negative regulation of AICD","type":"related"},{"name":"negative regulation of activation-induced cell death","type":"related"},{"name":"negative regulation of macrophage apoptosis","type":"narrow"}],"termid":"GO:2000110"}


id: PBO:0070603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 71","termid":"PBO:0070603"}


id: PBO:0002848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitocondrial FUN14 family protein","termid":"PBO:0002848"}


id: PBO:0043611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COMMD3-BMI1 readthrough","termid":"PBO:0043611"}


id: PBO:0075210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntrophin alpha 1","termid":"PBO:0075210"}


id: PBO:0034669
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_level_of_sumoylated_protein_in_cell","termid":"PBO:0034669"}


id: GO:0034140
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 3 signaling pathway.","definition_xrefs":["GOC:add","PMID:16551253","PMID:17328678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of toll-like receptor 3 signaling pathway","termid":"GO:0034139"},{"relation_name":"is_a","term_name":"negative regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039532"},{"relation_name":"negatively_regulates","term_name":"toll-like receptor 3 signaling pathway","termid":"GO:0034138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of toll-like receptor 3 signaling pathway","synonyms":[{"name":"negative regulation of TLR3 signaling pathway","type":"exact"},{"name":"negative regulation of toll-like receptor 3 signalling pathway","type":"exact"}],"termid":"GO:0034140"}


id: PBO:0078679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon TTT) 12-1","termid":"PBO:0078679"}


id: PBO:0011087
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae URA1","termid":"PBO:0011087"}


id: GO:0004931
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a monoatomic cation by a channel that opens when ATP is bound by the channel complex or one of its constituent parts on the extracellular side of the plasma membrane.","definition_xrefs":["GOC:mah","GOC:bf","PMID:9755289"],"direct_ancestors":[{"relation_name":"is_a","term_name":"excitatory extracellular ligand-gated monoatomic ion channel activity","termid":"GO:0005231"},{"relation_name":"is_a","term_name":"ATP-gated ion channel activity","termid":"GO:0035381"},{"relation_name":"is_a","term_name":"ligand-gated monoatomic cation channel activity","termid":"GO:0099094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"extracellularly ATP-gated monoatomic cation channel activity","secondary_identifiers":["Reactome:R-HSA-877187"],"synonyms":[{"name":"P2X receptor","type":"related"},{"name":"extracellularly ATP-gated cation channel activity","type":"broad"},{"name":"purinoceptor","type":"broad"},{"name":"purinoreceptor","type":"broad"}],"termid":"GO:0004931"}


id: PBO:0039226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AKT serine/threonine kinase 1","termid":"PBO:0039226"}


id: GO:0045823
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of heart contraction.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of heart contraction","termid":"GO:0008016"},{"relation_name":"is_a","term_name":"positive regulation of blood circulation","termid":"GO:1903524"},{"relation_name":"positively_regulates","term_name":"heart contraction","termid":"GO:0060047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of heart contraction","synonyms":[{"name":"activation of heart contraction","type":"narrow"},{"name":"positive regulation of cardiac contraction","type":"exact"},{"name":"stimulation of heart contraction","type":"narrow"},{"name":"up regulation of heart contraction","type":"exact"},{"name":"up-regulation of heart contraction","type":"exact"},{"name":"upregulation of heart contraction","type":"exact"}],"termid":"GO:0045823"}


id: PR:Q9HGL6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A brix domain-containing protein 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02384","PANTHER:PTHR13634:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein brx1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC800.06","secondary_identifiers":["UniProtKB:Q9HGL6"],"synonyms":[{"name":"Spom972h-BRIX1","type":"exact"}],"termid":"PR:Q9HGL6"}


id: PBO:0003854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF and RSC complex subunit Ssr4","termid":"PBO:0003854"}


id: PBO:0051308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1/OR2-0 (non-functional)","termid":"PBO:0051308"}


id: PBO:0056816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major facilitator superfamily domain containing 9","termid":"PBO:0056816"}


id: PBO:0049768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA complex group 4 pseudogene 5","termid":"PBO:0049768"}


id: PBO:0000493
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence orphan, characterised","termid":"PBO:0000493"}


id: PBO:0067441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 563, pseudogene","termid":"PBO:0067441"}


id: PBO:0109649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XG Y-linked 2 (pseudogene)","termid":"PBO:0109649"}


id: PBO:0034768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spindle pole body SUN domain protein Sad1","termid":"PBO:0034768"}


id: SO:0000253
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"tRNA_primary_transcript","termid":"SO:0000210"},{"relation_name":"is_a","term_name":"sncRNA","termid":"SO:0002247"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA","secondary_identifiers":["http://en.wikipedia.org/wiki/TRNA"],"synonyms":[{"name":"INSDC_feature:tRNA","type":"exact"},{"name":"INSDC_qualifier:unknown","type":"broad"},{"name":"transfer RNA","type":"related"},{"name":"transfer ribonucleic acid","type":"related"}],"termid":"SO:0000253"}


id: GO:0000452
data:
  {"annotated_genes":["SJAG_00744","SJAG_00943","SJAG_02377","SJAG_02350","SJAG_03410"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90200,94853,104139,106245,107385],"is_not":false,"summary":null,"term":"GO:0000452"}]},"cv_name":"biological_process","definition":"The posttranscriptional addition of methyl groups to the 2'-oxygen atom of nucleotide residues in an rRNA molecule during ribosome biogenesis using a snoRNA guide that targets the position of methylation.","definition_xrefs":["GOC:curators","ISBN:1555811337"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA 2'-O-methylation","termid":"GO:0000451"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00744":null,"SJAG_00943":null,"SJAG_02350":null,"SJAG_02377":null,"SJAG_03410":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0042254"}],"interesting_parent_ids":["GO:0010467","GO:0042254","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"snoRNA guided rRNA 2'-O-methylation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"snoRNA guided rRNA 2'-O-ribose methylation","type":"related"}],"termid":"GO:0000452","terms_by_termid":{"GO:0000452":null}}


id: PBO:0070329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY4 pseudogene 1","termid":"PBO:0070329"}


id: PBO:0059954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 40","termid":"PBO:0059954"}


id: GO:0090433
data:
  {"annotated_genes":["SJAG_03471"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101639],"is_not":false,"summary":null,"term":"GO:0090433"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + palmitic acid + CoA = AMP + diphosphate + palmitoyl-CoA.","definition_xrefs":["GOC:al","PMID:18071249"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long-chain fatty acid-CoA ligase activity","termid":"GO:0004467"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03471":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016874"],"is_obsolete":false,"name":"palmitoyl-CoA ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-434382"],"synonyms":[{"name":"palmitoyl-CoA synthetase activity","type":"exact"}],"termid":"GO:0090433","terms_by_termid":{"GO:0090433":null}}


id: GO:2000085
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of mesenchymal to epithelial transition involved in mesonephros morphogenesis.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mesenchymal to epithelial transition involved in mesonephros morphogenesis","termid":"GO:2000084"},{"relation_name":"is_a","term_name":"negative regulation of epithelial cell differentiation involved in kidney development","termid":"GO:2000697"},{"relation_name":"negatively_regulates","term_name":"mesenchymal to epithelial transition involved in mesonephros morphogenesis","termid":"GO:0061261"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of mesenchymal to epithelial transition involved in mesonephros morphogenesis","synonyms":[{"name":"negative regulation of mesonephric mesenchyme to epithelial transition","type":"related"}],"termid":"GO:2000085"}


id: GO:2000191
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of fatty acid transport.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipid transport","termid":"GO:0032368"},{"relation_name":"is_a","term_name":"regulation of organic acid transport","termid":"GO:0032890"},{"relation_name":"regulates","term_name":"fatty acid transport","termid":"GO:0015908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of fatty acid transport","termid":"GO:2000191"}


id: GO:0003245
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental growth of cardiac muscle tissue that contributes to the shaping of the heart.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth involved in heart morphogenesis","termid":"GO:0003241"},{"relation_name":"is_a","term_name":"cardiac muscle tissue growth","termid":"GO:0055017"},{"relation_name":"part_of","term_name":"cardiac muscle tissue morphogenesis","termid":"GO:0055008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac muscle tissue growth involved in heart morphogenesis","termid":"GO:0003245"}


id: PBO:0017821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LEM domain protein Man1, Sad1 interacting factor","termid":"PBO:0017821"}


id: PBO:0050083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group AT-hook 1 pseudogene 3","termid":"PBO:0050083"}


id: PBO:0054574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1976","termid":"PBO:0054574"}


id: PBO:0074058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC25A36 pseudogene 1","termid":"PBO:0074058"}


id: PBO:0074046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 28","termid":"PBO:0074046"}


id: PBO:0079119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor susceptibility 101","termid":"PBO:0079119"}


id: FYPO:0005335
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through mitotic cell cycle arrest at the mitotic G2/M phase transition occurs abnormally when the cell is subject to glucose starvation.","definition_xrefs":["PomBase:al","PMID:26804466","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormally arrested mitotic cell cycle progression","termid":"FYPO:0000502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal cell cycle arrest at mitotic G2/M phase transition during glucose starvation","synonyms":[{"name":"abnormal cell cycle arrest at mitotic G2/M phase transition during glucose deprivation","type":"exact"},{"name":"abnormal cell cycle arrest at mitotic G2/M phase transition during glucose limitation","type":"related"},{"name":"abnormal cell cycle arrest in mitotic G2 phase during glucose depletion","type":"exact"},{"name":"abnormal mitotic cell cycle arrest at mitotic G2/M phase transition during glucose starvation","type":"exact"},{"name":"abolished mitotic G2/M phase transition during glucose starvation","type":"related"}],"termid":"FYPO:0005335"}


id: PBO:0005519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein Spc25","termid":"PBO:0005519"}


id: PBO:0038385
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_parasitoid","termid":"PBO:0038385"}


id: PBO:0005021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"threo-3-hydroxyaspartate ammonia-lyase (predicted)","termid":"PBO:0005021"}


id: PBO:0062142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily F member 8 pseudogene","termid":"PBO:0062142"}


id: MOD:00822
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-leucine residue and an L-cysteine residue by a thioester bond to form S-(L-leucyl)-L-cysteine.","definition_xrefs":["PubMed:12591958","RESID:AA0412"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thioester crosslinked residues","termid":"MOD:00395"},{"relation_name":"is_a","term_name":"crosslinked residues with loss of water","termid":"MOD:00954"},{"relation_name":"is_a","term_name":"crosslinked L-leucine residue","termid":"MOD:02050"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-(L-leucyl)-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-([(2S)-2-amino-4-methylpentanoyl]sulfanyl)propanoic acid","type":"exact"},{"name":"CROSSLNK Leucyl cysteine thioester (Cys-Leu)","type":"exact"},{"name":"S-(2-amino-4-methylpentanoyl)cysteine","type":"exact"},{"name":"S-(L-leucyl)-L-cysteine","type":"exact"},{"name":"XLNK1LeuSCys","type":"exact"},{"name":"leucine cysteine thioester","type":"exact"}],"termid":"MOD:00822"}


id: GO:0022824
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of an ion by a channel that opens when a specific neurotransmitter has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular ligand-gated monoatomic ion channel activity","termid":"GO:0005230"},{"relation_name":"is_a","term_name":"transmitter-gated channel activity","termid":"GO:0022835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215","GO:0038023"],"is_obsolete":false,"name":"transmitter-gated monoatomic ion channel activity","synonyms":[{"name":"ionotropic neurotransmitter receptor activity","type":"narrow"},{"name":"transmitter-gated ion channel activity","type":"broad"}],"termid":"GO:0022824"}


id: PBO:0090375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ergothioneine biosynthesis methyltransferase Egt2","termid":"PBO:0090375"}


id: PR:O74876
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug135 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74876"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 135 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC330.04c","synonyms":[{"name":"Spom972h-mug135","type":"exact"}],"termid":"PR:O74876"}


id: FYPO:0000992
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol-3-phosphate measured in a cell differs from normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered cellular phosphoinositide level","termid":"FYPO:0001290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"altered cellular phosphatidylinositol-3-phosphate level","synonyms":[{"name":"abnormal cellular phosphatidylinositol-3-phosphate level","type":"exact"},{"name":"altered PI-3-P accumulation","type":"related"},{"name":"altered cellular PI(3)P level","type":"exact"},{"name":"altered cellular PI-3-P level","type":"exact"},{"name":"altered cellular phosphatidylinositol-3-phosphate level during mitotic cell cycle","type":"related"},{"name":"altered cellular phosphatidylinositol-3-phosphate level during vegetative growth","type":"exact"}],"termid":"FYPO:0000992"}


id: PBO:0017093
data:
  {"annotation_feature_type":"gene","cv_name":"subunit_composition","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homomeric(6)","termid":"PBO:0017093"}


id: PBO:0066634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RIMS binding protein 2","termid":"PBO:0066634"}


id: PBO:0054149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1516","termid":"PBO:0054149"}


id: GO:0035122
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process, occurring in the embryo, by which the anatomical structures of the medial fin are generated and organized. Medial fins are unpaired fins of fish, usually located dorsomedially or ventromedially and primarily used for stability while swimming.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic appendage morphogenesis","termid":"GO:0035113"},{"relation_name":"is_a","term_name":"medial fin morphogenesis","termid":"GO:0035141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic medial fin morphogenesis","synonyms":[{"name":"embryonic unpaired fin morphogenesis","type":"exact"}],"termid":"GO:0035122"}


id: PBO:0067512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 653, pseudogene","termid":"PBO:0067512"}


id: PBO:0063261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin beta 7","termid":"PBO:0063261"}


id: PR:O42659
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- apc14 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42659"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase-promoting complex subunit 14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC27D7.05c","synonyms":[{"name":"20S cyclosome/APC complex protein apc14 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-apc14","type":"exact"},{"name":"overlapping meiotic transcript protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O42659"}


id: PBO:0074171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 36 member 2","termid":"PBO:0074171"}


id: PBO:0040839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"B cell acute lymphoblastic leukemia expressed","termid":"PBO:0040839"}


id: PBO:0042800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEP295 N-terminal like","termid":"PBO:0042800"}


id: PBO:0058237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4525","termid":"PBO:0058237"}


id: PBO:0110385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3122","termid":"PBO:0110385"}


id: PBO:0015224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"geranylgeranyltransferase I and farnesyltransferase alpha subunit Cwp1","termid":"PBO:0015224"}


id: PR:Q9URY8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A chloride anion exchanger that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02282","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfate permease C869.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC869.05c","secondary_identifiers":["UniProtKB:Q9URY8"],"synonyms":[{"name":"Spom972h-SLC26A3","type":"exact"}],"termid":"PR:Q9URY8"}


id: FYPO:0003524
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cytoskeleton organization is abnormal at one or both cell tips.","definition_xrefs":["PomBase:mah","GO:0030036","PMID:24954052"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton organization during vegetative growth","termid":"FYPO:0000801"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0004803","FYPO:0001985"],"is_obsolete":false,"name":"abnormal actin cytoskeleton organization at cell tip","synonyms":[{"name":"abnormal actin cytoskeleton organisation at cell tip","type":"exact"},{"name":"abnormal actin cytoskeleton organization at cell end","type":"exact"},{"name":"abnormal actin cytoskeleton organization at cell tip during mitotic cell cycle","type":"related"},{"name":"abnormal actin cytoskeleton organization at cell tip during vegetative growth","type":"exact"}],"termid":"FYPO:0003524"}


id: GO:2000724
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cardiac vascular smooth muscle cell differentiation.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of vascular associated smooth muscle cell differentiation","termid":"GO:1905065"},{"relation_name":"is_a","term_name":"positive regulation of cardiocyte differentiation","termid":"GO:1905209"},{"relation_name":"is_a","term_name":"regulation of cardiac vascular smooth muscle cell differentiation","termid":"GO:2000722"},{"relation_name":"positively_regulates","term_name":"cardiac vascular smooth muscle cell differentiation","termid":"GO:0060947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cardiac vascular smooth muscle cell differentiation","synonyms":[{"name":"positive regulation of heart vascular smooth muscle cell differentiation","type":"exact"}],"termid":"GO:2000724"}


id: PBO:0030553
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_lysine_import_during_nitrogen_starvation","termid":"PBO:0030553"}


id: GO:0005332
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: gamma-aminobutyric acid(out) + Na+(out) + Cl-(out) = gamma-aminobutyric acid(in) + Na+(in) + Cl(in).","definition_xrefs":["PMID:7589472","PMID:7861179"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid:sodium symporter activity","termid":"GO:0005283"},{"relation_name":"is_a","term_name":"gamma-aminobutyric acid transmembrane transporter activity","termid":"GO:0015185"},{"relation_name":"is_a","term_name":"sodium:chloride symporter activity","termid":"GO:0015378"},{"relation_name":"is_a","term_name":"monocarboxylate:sodium symporter activity","termid":"GO:0140161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"gamma-aminobutyric acid:sodium:chloride symporter activity","secondary_identifiers":["Reactome:R-HSA-444007","TC:2.A.22.3.2"],"synonyms":[{"name":"4-aminobutanoate:sodium symporter activity","type":"exact"},{"name":"4-aminobutyrate:sodium symporter activity","type":"exact"},{"name":"GABA:sodium symporter activity","type":"exact"},{"name":"betaine/GABA:sodium symporter activity","type":"exact"},{"name":"gamma-aminobutyric acid:sodium symporter activity","type":"exact"},{"name":"sodium/chloride-dependent GABA transporter activity","type":"broad"}],"termid":"GO:0005332"}


id: GO:0061128
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of directed movement of a motile cell or organism up a concentration gradient of 3',5'-cAMP by the action of DIF-2. DIF-2 is a chlorinated alkylphenone.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of positive chemotaxis to cAMP by DIF-2","termid":"GO:0061121"},{"relation_name":"is_a","term_name":"positive regulation of positive chemotaxis to cAMP by chlorinated alkylphenone","termid":"GO:0061124"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of chemotaxis to cAMP by DIF-2","termid":"GO:0061128"}


id: PBO:0053225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"legumain","termid":"PBO:0053225"}


id: GO:0042781
data:
  {"annotated_genes":["SJAG_00997","SJAG_04885"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[88226,105946],"is_not":false,"summary":null,"term":"GO:0042781"}]},"cv_name":"molecular_function","definition":"Catalysis of the endonucleolytic cleavage of RNA, removing extra 3' nucleotides from tRNA precursor, generating 3' termini of tRNAs. A 3'-hydroxy group is left at the tRNA terminus and a 5'-phosphoryl group is left at the trailer molecule.","definition_xrefs":["PMID:21208191","PMID:12032089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA endonuclease activity, producing 5'-phosphomonoesters","termid":"GO:0016891"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00997":null,"SJAG_04885":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0140101"}],"interesting_parent_ids":["GO:0140101","GO:0016787","GO:0003824","GO:0140098","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"3'-tRNA processing endoribonuclease activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:3.1.26.11","MetaCyc:3.1.26.11-RXN"],"synonyms":[{"name":"3 tRNase activity","type":"related"},{"name":"3' tRNA processing endoribonuclease activity","type":"exact"},{"name":"3' tRNase activity","type":"exact"},{"name":"RNase Z activity","type":"broad"},{"name":"ribonuclease Z activity","type":"broad"},{"name":"tRNA 3 endonuclease activity","type":"related"},{"name":"tRNA 3' endonuclease activity","type":"exact"},{"name":"tRNAse Z","type":"related"}],"termid":"GO:0042781","terms_by_termid":{"GO:0042781":null}}


id: PBO:0043317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clathrin interactor 1","termid":"PBO:0043317"}


id: GO:0002865
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of an acute inflammatory response to an antigenic stimulus.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of acute inflammatory response","termid":"GO:0002674"},{"relation_name":"is_a","term_name":"negative regulation of inflammatory response to antigenic stimulus","termid":"GO:0002862"},{"relation_name":"is_a","term_name":"regulation of acute inflammatory response to antigenic stimulus","termid":"GO:0002864"},{"relation_name":"negatively_regulates","term_name":"acute inflammatory response to antigenic stimulus","termid":"GO:0002438"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of acute inflammatory response to antigenic stimulus","synonyms":[{"name":"down regulation of acute inflammatory response to antigenic stimulus","type":"exact"},{"name":"down-regulation of acute inflammatory response to antigenic stimulus","type":"exact"},{"name":"downregulation of acute inflammatory response to antigenic stimulus","type":"exact"},{"name":"inhibition of acute inflammatory response to antigenic stimulus","type":"narrow"}],"termid":"GO:0002865"}


id: FYPO:0000813
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which plasma membrane organization is abnormal. Plasma membrane organization results in the assembly, arrangement of constituent parts, or disassembly of the plasma membrane.","definition_xrefs":["GO:0007009","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal endomembrane system organization","termid":"FYPO:0000804"},{"relation_name":"is_a","term_name":"abnormal membrane organization during vegetative growth","termid":"FYPO:0001351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal plasma membrane organization","synonyms":[{"name":"abnormal plasma membrane organisation","type":"exact"},{"name":"abnormal plasma membrane organization during mitotic cell cycle","type":"related"},{"name":"abnormal plasma membrane organization during vegetative growth","type":"exact"}],"termid":"FYPO:0000813"}


id: GO:0016407
data:
  {"annotated_genes":["SJAG_04631","SJAG_02654","SJAG_00519","SJAG_00413","SJAG_01619","SJAG_02296","SJAG_02773","SJAG_04179","SJAG_02165","SJAG_02571","SJAG_02309","SJAG_04131","SJAG_03546","SJAG_03305","SJAG_04791","SJAG_02726","SJAG_05413","SJAG_00246","SJAG_03537","SJAG_02990","SJAG_01204","SJAG_04107","SJAG_04535","SJAG_00866","SJAG_00695","SJAG_03162","SJAG_01638","SJAG_00395","SJAG_01877","SJAG_01826","SJAG_01899","SJAG_04756","SJAG_02158","SJAG_03112","SJAG_03288","SJAG_01592","SJAG_04305","SJAG_00676"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96794],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004313"},{"annotations":[102569],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003985"},{"annotations":[98675,107950],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004042"},{"annotations":[96673],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004059"},{"annotations":[88830],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046941"},{"annotations":[84355],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047198"},{"annotations":[96674,83528],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004145"},{"annotations":[110281,114466],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004742"},{"annotations":[69698],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004343"},{"annotations":[98676],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004358"},{"annotations":[69002,100919],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016287"},{"annotations":[108689],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004402"},{"annotations":[114552],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043998"},{"annotations":[87487],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010484"},{"annotations":[87488,86851],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036408"},{"annotations":[87489],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043993"},{"annotations":[95024],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044016"},{"annotations":[105375,105374],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032931"},{"annotations":[87490],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043992"},{"annotations":[114553],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010485"},{"annotations":[84548],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043997"},{"annotations":[95025],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046972"},{"annotations":[84549],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043995"},{"annotations":[84550],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043996"},{"annotations":[97946,107133],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004414"},{"annotations":[98638,113275,107156,99082],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008080"},{"annotations":[106464,99641,113998,111381],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004596"},{"annotations":[84106],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034212"},{"annotations":[85501],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990190"},{"annotations":[85502,114554],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990189"},{"annotations":[100046],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052858"},{"annotations":[108106],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046027"},{"annotations":[88680],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990883"},{"annotations":[97947,87328],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009001"},{"annotations":[88682,103366],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051392"},{"annotations":[91543],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106261"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of an acetyl group to an acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl 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