# terms

id: PBO:0004265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"optic atrophy 3 family protein","termid":"PBO:0004265"}


id: PBO:0054781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2194","termid":"PBO:0054781"}


id: PBO:0051258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable (III)-44 (pseudogene)","termid":"PBO:0051258"}


id: PBO:0055806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysophosphatidylcholine acyltransferase 2","termid":"PBO:0055806"}


id: FYPO:0007694
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the activity of a DNA strand exchange activator is absent.","definition_xrefs":["PMID:33493431","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic activity regulator phenotype","termid":"FYPO:0007690"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652"],"is_obsolete":false,"name":"abolished DNA strand exchange activator activity","synonyms":[{"name":"DNA strand exchange activator activity abolished","type":"exact"},{"name":"abolished RecA-family recombinase activator activity","type":"exact"},{"name":"abolished positive regulation of RecA-family recombinase activity","type":"related"}],"termid":"FYPO:0007694"}


id: PBO:0080412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS39 divergent transcript","termid":"PBO:0080412"}


id: GO:0106230
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of a propionyl group from a residue in a peptide or protein.","definition_xrefs":["PMID:30026585","GOC:sp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein deacylation","termid":"GO:0035601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein depropionylation","termid":"GO:0106230"}


id: PBO:0084530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the NineTeen Complex (NTC); NTC contains Prp19p and stabilizes U6 snRNA in catalytic forms of spliceosome containing U2, U5, and U6 snRNAs; interacts with Prp16p to modulate splicing fidelity; isy1 syf2 cells have defective spindles","termid":"PBO:0084530"}


id: FYPO:0009029
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population phenotype in which cell growth is increased relative to normal in a medium containing arginine as the nitrogen source.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased vegetative cell population growth","termid":"FYPO:0004557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0005447","FYPO:0002058","FYPO:0000139","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"increased cell population growth on arginine nitrogen source","synonyms":[{"name":"increased growth on arginine nitrogen source","type":"broad"},{"name":"increased vegetative cell growth on arginine nitrogen source","type":"exact"}],"termid":"FYPO:0009029"}


id: MOD:01549
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a residue with the Applied Biosystems iTRAQ8plex-116 reporter+balance group.","definition_xrefs":["Unimod:730"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(13)C isotope tagged reagent","termid":"MOD:01428"},{"relation_name":"is_a","term_name":"(15)N isotope tagged reagent","termid":"MOD:01429"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent acylated residue","termid":"MOD:01526"},{"relation_name":"is_a","term_name":"modifications with monoisotopic mass differences that are nominally equal at 304.205359 Da","termid":"MOD:01591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ8plex-116 reporter+balance reagent acylated residue","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"Representative mass and accurate mass for 113, 114, 116 & 117","type":"related"},{"name":"iTRAQ8plex","type":"related"},{"name":"iTRAQ8plex:13C(7)15N(1)","type":"related"}],"termid":"MOD:01549"}


id: FYECO:0000420
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which ferrichrome was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ ferrichrome","termid":"FYECO:0000420"}


id: PBO:0044076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cleavage stimulation factor subunit 3","termid":"PBO:0044076"}


id: PBO:0043357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clarin 3","termid":"PBO:0043357"}


id: PBO:0081002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 40","termid":"PBO:0081002"}


id: GO:0072673
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level and in which the structure of a lamellipodium is organized.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lamellipodium organization","termid":"GO:0097581"},{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection morphogenesis","termid":"GO:0120039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lamellipodium morphogenesis","synonyms":[{"name":"lamellipodium organization","type":"related"}],"termid":"GO:0072673"}


id: PBO:0061483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuregulin 2","termid":"PBO:0061483"}


id: PBO:0057575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 802","termid":"PBO:0057575"}


id: PBO:0029892
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_oxaliplatin","termid":"PBO:0029892"}


id: PBO:0052542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kallikrein related peptidase 15","termid":"PBO:0052542"}


id: GO:0140066
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The crotonylation of a lysine residue in a protein. Crotonyl is the univalent radical CH3-CH=CH-CO- derived from crotonic acid.","definition_xrefs":["PMID:25818647","Wikipedia:crotonyl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein acylation","termid":"GO:0043543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-lysine crotonylation","termid":"GO:0140066"}


id: SO:0001928
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A duplication of the distal region of a chromosome.","definition_xrefs":["SO:bm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"duplication","termid":"SO:1000035"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"distal_duplication","synonyms":[{"name":"distal duplication","type":"exact"}],"termid":"SO:0001928"}


id: FYPO:0003550
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell during one or both meiotic nuclear divisions is lower than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level during meiotic cell cycle","termid":"FYPO:0004991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein level during meiosis","synonyms":[{"name":"decreased protein accumulation during meiosis","type":"related"},{"name":"decreased protein level during meiotic nuclear division","type":"exact"},{"name":"reduced protein level during meiosis","type":"exact"}],"termid":"FYPO:0003550"}


id: FYPO:0000616
data:
  {"alleles_by_uniquename":{"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T ts","gene_uniquename":"SJAG_03351","name":"cut23-415","uniquename":"SJAG_03351:allele-1"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115384,115385,115383],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000618"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through mitotic anaphase is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic M phase progression","termid":"FYPO:0000607"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01956":null,"SJAG_03351":null,"SJAG_03575":null},"genotype_count":3,"genotypes_by_uniquename":{"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]},"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"abnormal mitotic anaphase progression","references_by_uniquename":{"PMID:23786411":null},"single_locus_annotated_genes":["SJAG_01956","SJAG_03575","SJAG_03351"],"single_locus_genotype_uniquenames":["cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal anaphase progression during mitotic cell cycle","type":"exact"},{"name":"abnormal mitotic anaphase progression during vegetative growth","type":"exact"},{"name":"abnormal mitotic cell cycle progression in anaphase","type":"exact"},{"name":"mitotic cell cycle progression in anaphase: abnormal","type":"related"}],"termid":"FYPO:0000616","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0000618":null}}


id: PBO:0054194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1569","termid":"PBO:0054194"}


id: GO:1904011
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an Aroclor 1254 stimulus.","definition_xrefs":["GOC:TermGenie","PMID:18602130","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"},{"relation_name":"is_a","term_name":"response to Aroclor 1254","termid":"GO:1904010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to Aroclor 1254","termid":"GO:1904011"}


id: PBO:0068078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 384","termid":"PBO:0068078"}


id: PBO:0003548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AP-3 adaptor complex subunit Apm3 (predicted)","termid":"PBO:0003548"}


id: FYPO:0007306
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 12 of histone H4 in centromeric regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H4 acetylation during vegetative growth","termid":"FYPO:0002365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002274","FYPO:0002494","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased histone H4-K12 acetylation at centromere during vegetative growth","synonyms":[{"name":"increased centromeric histone H4K12 acetylation during vegetative growth","type":"exact"},{"name":"increased histone H4-K12 acetylation at centromere during mitotic cell cycle","type":"related"},{"name":"increased histone H4K12 acetylation at centromere during vegetative growth","type":"exact"}],"termid":"FYPO:0007306"}


id: PBO:0088252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial mRNA processing protein Cox24/Pet20","termid":"PBO:0088252"}


id: PBO:0001844
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.4.1.83","termid":"PBO:0001844"}


id: GO:0032197
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A type of transposition in which a transposable element (transposon) copies and pastes itself into a different genomic location by transcription and convertsion of the transcribed RNA back into DNA through reverse transcription.","definition_xrefs":["PMID:32588192","ISBN:1555812090","PMID:26912865","PMID:30958115","PMID:30416149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transposition","termid":"GO:0032196"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"retrotransposition","secondary_identifiers":["GO:0006320","GO:0006321","Wikipedia:Transposon##Class_I\\:_Retrotransposons","GO:0006322","GO:0006319"],"synonyms":[{"name":"Class I transposition","type":"exact"},{"name":"RNA-mediated transposition","type":"exact"},{"name":"Tf transposition","type":"narrow"},{"name":"Ty element transposition","type":"narrow"},{"name":"Ty1 element transposition","type":"narrow"},{"name":"Ty2 element transposition","type":"narrow"},{"name":"Ty3 element transposition","type":"narrow"},{"name":"retrotransposon transposition","type":"exact"},{"name":"transposition via RNA intermediate","type":"exact"},{"name":"transposition, RNA-mediated","type":"exact"}],"termid":"GO:0032197"}


id: PBO:0066344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of chromosome condensation 2 pseudogene 6","termid":"PBO:0066344"}


id: GO:1902712
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of G protein-coupled GABA receptor activity. In human, it is usually a heterodimer composed of GABA-B receptor subunits 1 and 2.","definition_xrefs":["GO_REF:0000088","GOC:bhm","GOC:TermGenie","PMID:18790874"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor dimeric complex","termid":"GO:0038037"},{"relation_name":"is_a","term_name":"GABA receptor complex","termid":"GO:1902710"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005886"],"is_obsolete":false,"name":"G protein-coupled GABA receptor complex","synonyms":[{"name":"G-protein coupled GABA receptor complex","type":"exact"}],"termid":"GO:1902712"}


id: GO:0004668
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + L-arginyl-[protein] = L-citrullyl-[protein] + NH4+, resulting in citrullination of the target protein. This reaction is calcium-dependent.","definition_xrefs":["PMID:27393304"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016810"],"is_obsolete":false,"name":"protein-arginine deiminase activity","secondary_identifiers":["Reactome:R-HSA-1183128","Reactome:R-HSA-3247569","MetaCyc:PROTEIN-ARGININE-DEIMINASE-RXN","EC:3.5.3.15","RHEA:18089"],"synonyms":[{"name":"peptidylarginine deiminase activity","type":"related"},{"name":"protein-L-arginine iminohydrolase activity","type":"related"}],"termid":"GO:0004668"}


id: PBO:0058544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6090","termid":"PBO:0058544"}


id: PBO:0048154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forty-two-three domain containing 1 pseudogene 1","termid":"PBO:0048154"}


id: PBO:0031438
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_formamide","termid":"PBO:0031438"}


id: PBO:0048957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycoprotein Ib platelet subunit alpha","termid":"PBO:0048957"}


id: GO:2000992
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of galactomannan catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of catabolic process","termid":"GO:0009895"},{"relation_name":"is_a","term_name":"negative regulation of macromolecule metabolic process","termid":"GO:0010605"},{"relation_name":"is_a","term_name":"negative regulation of carbohydrate metabolic process","termid":"GO:0045912"},{"relation_name":"is_a","term_name":"regulation of galactomannan catabolic process","termid":"GO:2000991"},{"relation_name":"negatively_regulates","term_name":"galactomannan catabolic process","termid":"GO:0051682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"negatively_regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"negative regulation of galactomannan catabolic process","termid":"GO:2000992"}


id: PBO:0012065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pig-F/3-ketosphinganine reductase fusion protein (predicted)","termid":"PBO:0012065"}


id: PBO:0047860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, folic acid type, rare, fra(1)(p21.3)","termid":"PBO:0047860"}


id: PBO:0040090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arylsulfatase family member J","termid":"PBO:0040090"}


id: PBO:0003744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit VII Cox7 (predicted)","termid":"PBO:0003744"}


id: GO:0098834
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The cytoplasmic component of the presynaptic endocytic zone.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cortex region","termid":"GO:0099738"},{"relation_name":"part_of","term_name":"presynaptic endocytic zone","termid":"GO:0098833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005938"}],"interesting_parent_ids":["GO:0005575","GO:0005938","GO:0005737"],"is_obsolete":false,"name":"presynaptic endocytic zone cytoplasmic component","synonyms":[{"name":"cortex of presynaptic endocytic zone","type":"exact"}],"termid":"GO:0098834"}


id: PBO:0000908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-directed RNA polymerase Rdp1","termid":"PBO:0000908"}


id: PBO:0036099
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_nucleus_during_cellular_response_to_heat","termid":"PBO:0036099"}


id: MOD:00096
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamic acid residue to L-glutamic acid 1-amide.","definition_xrefs":["PubMed:1093875","PubMed:14550575","RESID:AA0087"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C1-amidated residue","termid":"MOD:00883"},{"relation_name":"is_a","term_name":"modified L-glutamic acid residue","termid":"MOD:00906"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-glutamic acid 1-amide","synonyms":[{"name":"(2S)-2-amino-1-pentanediamic acid","type":"exact"},{"name":"1-amidated L-glutamic acid","type":"exact"},{"name":"4,5-diamino-5-oxopentanoic acid","type":"exact"},{"name":"GluN","type":"exact"},{"name":"L-glutamic acid 1-amide","type":"exact"},{"name":"MOD_RES Glutamic acid 1-amide","type":"exact"},{"name":"isoglutamine","type":"exact"}],"termid":"MOD:00096"}


id: PBO:0069711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 991, pseudogene","termid":"PBO:0069711"}


id: GO:0047264
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: heteroglycan + GDP-mannose = alpha-D-mannosylheteroglycan + GDP.","definition_xrefs":["EC:2.4.1.48"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannosyltransferase activity","termid":"GO:0000030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"heteroglycan alpha-mannosyltransferase activity","synonyms":[{"name":"GDP mannose alpha-mannosyltransferase activity","type":"related"},{"name":"GDP-mannose:heteroglycan 2-(or 3-)-alpha-D-mannosyltransferase activity","type":"related"},{"name":"guanosine diphosphomannose-heteroglycan alpha-mannosyltransferase activity","type":"related"},{"name":"heteropolysaccharide alpha-mannosyltransferase activity","type":"exact"}],"termid":"GO:0047264"}


id: FYPO:0006969
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of cytidine measured in the cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular cytidine level","synonyms":[{"name":"decreased cellular cytidine level during mitotic cell cycle","type":"related"},{"name":"decreased cellular cytidine level during vegetative growth","type":"exact"},{"name":"reduced cellular cytidine level","type":"exact"}],"termid":"FYPO:0006969"}


id: PBO:0030342
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_MCM_complex_assembly","termid":"PBO:0030342"}


id: GO:0071890
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to bicarbonate ions (CHO3-).","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"bicarbonate binding","synonyms":[{"name":"CHO3- ion binding binding","type":"exact"},{"name":"hydrogencarbonate binding","type":"exact"}],"termid":"GO:0071890"}


id: PBO:0053606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 639","termid":"PBO:0053606"}


id: PBO:0051091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy joining 2P (pseudogene)","termid":"PBO:0051091"}


id: PBO:0000053
data:
  {"annotation_feature_type":"gene","cv_name":"genome_org","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"present at telomere ends","termid":"PBO:0000053"}


id: PR:O94297
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11712:SF23","PRO:DNx","OMA:SCHPO03764"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC887.13c","secondary_identifiers":["UniProtKB:O94297"],"synonyms":[{"name":"Spom972h-OXSM","type":"exact"},{"name":"beta-ketoacyl-ACP synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"mtKAS (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94297"}


id: PBO:0057346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 541","termid":"PBO:0057346"}


id: GO:0002323
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The change in morphology and behavior of a natural killer cell resulting from exposure a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response.","definition_xrefs":["GOC:add","PMID:15032583"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphocyte activation involved in immune response","termid":"GO:0002285"},{"relation_name":"is_a","term_name":"natural killer cell activation","termid":"GO:0030101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"natural killer cell activation involved in immune response","synonyms":[{"name":"NK cell activation during immune response","type":"related"},{"name":"natural killer cell activation during immune response","type":"related"}],"termid":"GO:0002323"}


id: PBO:0046596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K3 member 6","termid":"PBO:0046596"}


id: PATO:0001994
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A cellularity quality inhering in a bearer by virtue of the bearer's consisting of exactly one cell.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellularity","termid":"PATO:0001992"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unicellular","termid":"PATO:0001994"}


id: PBO:0066649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras and Rab interactor 3","termid":"PBO:0066649"}


id: GO:0008343
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Feeding behavior in a fully developed and mature organism.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feeding behavior","termid":"GO:0007631"},{"relation_name":"is_a","term_name":"adult behavior","termid":"GO:0030534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adult feeding behavior","synonyms":[{"name":"adult feeding behaviour","type":"exact"}],"termid":"GO:0008343"}


id: MOD:01383
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links two L-cysteine residues and oxidizes a sulfur to form L-cystine S-oxide.","definition_xrefs":["RESID:AA0457"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disulfide crosslinked residues","termid":"MOD:00689"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-cystine S-oxide","synonyms":[{"name":"(2R)-2-amino-3-[([(2R)-2-amino-2-carboxyethyl]sulfanyl)sulfinyl]propanoic acid","type":"exact"},{"name":"CROSSLNK S-cysteinyl 3-(oxidosulfanyl)alanine (Cys-Cys)","type":"exact"},{"name":"L-cystine S-oxide","type":"exact"},{"name":"S-[(2R)-2-amino-3-oxopropyl] (2R)-2-amino-3-oxopropane-1-sulfinothioate","type":"exact"},{"name":"S-cysteinyl 3-(oxidosulfanyl)alanine","type":"exact"},{"name":"cystine sulfoxide","type":"exact"}],"termid":"MOD:01383"}


id: PR:O94388
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- vps902 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94388"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting-associated protein 9b (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A10.11c","synonyms":[{"name":"Spom972h-vps902","type":"exact"},{"name":"vacuolar protein-targeting protein 9b (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94388"}


id: GO:0001748
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the optic placode over time, from its formation to the mature structure. During embryonic stage 12 the placode starts to invaginate, forming a pouch. Cells that will form Bolwig's organ segregate from the ventral lip of this pouch, remaining in the head epidermis. The remainder of the invagination loses contact with the outer surface and becomes the optic lobe. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["PMID:8402833","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"insect visual primordium development","secondary_identifiers":["GO:0048049"],"synonyms":[{"name":"optic lobe and Bolwig's organ precursor development","type":"exact"},{"name":"optic lobe placode development","type":"exact"},{"name":"optic placode development","type":"broad"}],"termid":"GO:0001748"}


id: GO:1901047
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals generated as a consequence of the insulin receptor binding to insulin that controls viability and duration in the adult phase of the life-cycle.","definition_xrefs":["GOC:TermGenie","GOC:kmv","PMID:9360933"],"gene_count":0,"genotype_count":0,"name":"obsolete insulin receptor signaling pathway involved in determination of adult lifespan (obsolete GO:1901047)","synonyms":[{"name":"daf-2 receptor signaling pathway of determination of adult lifespan","type":"narrow"},{"name":"insulin receptor signaling pathway of determination of adult lifespan","type":"exact"},{"name":"insulin receptor signalling pathway of determination of adult lifespan","type":"exact"}],"termid":"GO:1901047"}


id: GO:0004644
data:
  {"annotated_genes":["SJAG_01814"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[113376],"is_not":false,"summary":null,"term":"GO:0004644"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 10-formyltetrahydrofolate + N1-(5-phospho-D-ribosyl)glycinamide = tetrahydrofolate + N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide.","definition_xrefs":["EC:2.1.2.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydroxymethyl-, formyl- and related transferase activity","termid":"GO:0016742"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01814":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016741","GO:0003674"],"is_obsolete":false,"name":"phosphoribosylglycinamide formyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-73813","MetaCyc:GART-RXN","RHEA:15053"],"synonyms":[{"name":"10-formyltetrahydrofolate:5'-phosphoribosylglycinamide N-formyltransferase activity","type":"related"},{"name":"2-amino-N-ribosylacetamide 5'-phosphate transformylase activity","type":"related"},{"name":"5'-phosphoribosylglycinamide transformylase activity","type":"related"},{"name":"5,10-methenyltetrahydrofolate:2-amino-N-ribosylacetamide ribonucleotide transformylase activity","type":"related"},{"name":"GAR TFase activity","type":"related"},{"name":"GAR formyltransferase activity","type":"related"},{"name":"GAR transformylase activity","type":"related"},{"name":"GART activity","type":"related"},{"name":"glycinamide ribonucleotide transformylase activity","type":"related"}],"termid":"GO:0004644","terms_by_termid":{"GO:0004644":null}}


id: FYPO:0000669
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which a peptidase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal peptidase activity","termid":"FYPO:0000666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000654","FYPO:0000652","FYPO:0000661"],"is_obsolete":false,"name":"abolished peptidase activity","synonyms":[{"name":"abolished protease activity","type":"exact"},{"name":"peptidase activity abolished","type":"exact"}],"termid":"FYPO:0000669"}


id: GO:0044796
data:
  {"annotated_genes":["SJAG_04190"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[100274],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043626"}]},"cv_name":"cellular_component","definition":"A protein complex which is capable of increasing the processivity of nucleotide polymerization by DNA polymerase as a part of DNA replication.","definition_xrefs":["GOC:jl","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator complex","termid":"GO:0150005"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04190":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"DNA polymerase processivity factor complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0044796","terms_by_termid":{"GO:0043626":null}}


id: GO:0050665
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrogen peroxide metabolic process","termid":"GO:0042743"},{"relation_name":"is_a","term_name":"cellular biosynthetic process","termid":"GO:0044249"},{"relation_name":"is_a","term_name":"reactive oxygen species biosynthetic process","termid":"GO:1903409"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hydrogen peroxide biosynthetic process","synonyms":[{"name":"H2O2 biosynthetic process","type":"exact"},{"name":"hydrogen peroxide anabolism","type":"exact"},{"name":"hydrogen peroxide biosynthesis","type":"exact"},{"name":"hydrogen peroxide formation","type":"exact"},{"name":"hydrogen peroxide generation","type":"exact"},{"name":"hydrogen peroxide synthesis","type":"exact"}],"termid":"GO:0050665"}


id: PBO:0053789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1040","termid":"PBO:0053789"}


id: GO:0048896
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of a glial cell along the axons in a lateral line nerve.","definition_xrefs":["PMID:12062041"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell migration","termid":"GO:0008347"},{"relation_name":"part_of","term_name":"lateral line nerve development","termid":"GO:0048892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lateral line nerve glial cell migration","synonyms":[{"name":"glial cell migration in lateral line nerve","type":"exact"}],"termid":"GO:0048896"}


id: PBO:0005581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short chain dehydrogenase pseudogene","termid":"PBO:0005581"}


id: PBO:0031031
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_plasma_membrane_organization","termid":"PBO:0031031"}


id: GO:0001062
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a plastid PEP-A RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.","definition_xrefs":["GOC:txnOH","PMID:20701995"],"gene_count":0,"genotype_count":0,"name":"obsolete plastid PEP-A RNA polymerase activity (obsolete GO:0001062)","termid":"GO:0001062"}


id: GO:0009934
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of meristem organization.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"regulates","term_name":"meristem structural organization","termid":"GO:0009933"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of meristem structural organization","synonyms":[{"name":"regulation of meristem organisation","type":"exact"},{"name":"regulation of meristem organization","type":"broad"}],"termid":"GO:0009934"}


id: FYPO:0005637
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the metaphase/anaphase transition of the first meiotic nuclear division begins at the normal (i.e. indistinguishable from wild type) time relative to other cell cycle events.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell cycle phase transition","termid":"FYPO:0006916"},{"relation_name":"is_a","term_name":"normal meiotic cell cycle process","termid":"FYPO:0007078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal onset of metaphase/anaphase transition of meiosis I","synonyms":[{"name":"normal duration of meiosis I metaphase","type":"related"},{"name":"normal duration of metaphase during meiosis I","type":"related"},{"name":"normal onset of meiosis I metaphase/anaphase transition","type":"exact"},{"name":"normal onset of metaphase/anaphase transition of first meiotic nuclear division","type":"exact"},{"name":"normal timing of meiosis I metaphase/anaphase transition","type":"related"}],"termid":"FYPO:0005637"}


id: FYPO:0000041
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"Auxotrophy in which a cell is unable to synthesize phenylalanine, and therefore requires phenylalanine in the medium for vegetative cell growth.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxotrophy","termid":"FYPO:0000128"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype","termid":"FYPO:0004638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"growth auxotrophic for phenylalanine","synonyms":[{"name":"growth auxotrophic for phenylalanine during mitotic cell cycle","type":"related"},{"name":"growth auxotrophic for phenylalanine during vegetative growth","type":"exact"},{"name":"phenylalanine auxotrophy","type":"exact"}],"termid":"FYPO:0000041"}


id: PBO:0081583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF511-PRAP1 readthrough","termid":"PBO:0081583"}


id: GO:0062060
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a NuA4 histone acetyltransferase complex.","definition_xrefs":["PMID:15528408"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"NuA4 histone acetyltransferase complex binding","termid":"GO:0062060"}


id: FYPO:0007871
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the lateral cortex of a cell is decreased, and some of the protein is detected distributed throughout the cell cortex. There may be little or no protein detected at the medial cortex.","definition_xrefs":["PomBase:mah","PMID:34533984"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cell cortex during vegetative growth","termid":"FYPO:0000928"},{"relation_name":"is_a","term_name":"abnormal protein localization to lateral cell cortex","termid":"FYPO:0007869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased protein localization to lateral cell cortex, with protein distributed in cell cortex, during vegetative growth","synonyms":[{"name":"decreased protein localisation to lateral cell cortex, with protein distributed in cell cortex, during vegetative growth","type":"exact"},{"name":"decreased protein localization to cell side, with protein distributed in cell cortex, during vegetative growth","type":"related"},{"name":"decreased protein localization to lateral cell cortex, with protein distributed in cell cortex, during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to lateral cortex, with protein distributed in cell cortex, during vegetative growth","type":"exact"},{"name":"reduced protein localization to lateral cell cortex, with protein distributed in cell cortex, during vegetative growth","type":"exact"}],"termid":"FYPO:0007871"}


id: PBO:0039514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 30B pseudogene 2","termid":"PBO:0039514"}


id: PBO:0016108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CASP family protein involved in Golgi vesicle transport Coy1 (predicted)","termid":"PBO:0016108"}


id: GO:0031669
data:
  {"annotated_genes":["SJAG_00209","SJAG_00233","SJAG_03473","SJAG_01970","SJAG_00380","SJAG_02380","SJAG_02973","SJAG_04067","SJAG_02026","SJAG_04725","SJAG_00781","SJAG_02699","SJAG_03256","SJAG_00169","SJAG_04677","SJAG_03911","SJAG_00534","SJAG_04032","SJAG_01245","SJAG_03519","SJAG_04743","SJAG_01509","SJAG_00256","SJAG_03309","SJAG_01184","SJAG_00457","SJAG_03371","SJAG_04873","SJAG_02424","SJAG_01162","SJAG_03486","SJAG_03048","SJAG_04031"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70959,102287],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000433"},{"annotations":[84141,90749,87381,106998,85523,91294,105718],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034198"},{"annotations":[112522,89036,96492,107409],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042149"},{"annotations":[99846,88521,90175,90183],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010106"},{"annotations":[101255],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036245"},{"annotations":[111828,103622,109383,109384],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016036"},{"annotations":[105307,94623,97169,114366,90700],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009267"},{"annotations":[111618],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031142"},{"annotations":[99892],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1901481"},{"annotations":[98857,99895],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1901482"},{"annotations":[83973,97435],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1905287"},{"annotations":[98444],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1904547"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to nutrient levels","termid":"GO:0031667"},{"relation_name":"is_a","term_name":"cellular response to stimulus","termid":"GO:0051716"}],"gene_count":33,"genes_by_uniquename":{"SJAG_00169":null,"SJAG_00209":null,"SJAG_00233":null,"SJAG_00256":null,"SJAG_00380":null,"SJAG_00457":null,"SJAG_00534":null,"SJAG_00781":null,"SJAG_01162":null,"SJAG_01184":null,"SJAG_01245":null,"SJAG_01509":null,"SJAG_01970":null,"SJAG_02026":null,"SJAG_02380":null,"SJAG_02424":null,"SJAG_02699":null,"SJAG_02973":null,"SJAG_03048":null,"SJAG_03256":null,"SJAG_03309":null,"SJAG_03371":null,"SJAG_03473":null,"SJAG_03486":null,"SJAG_03519":null,"SJAG_03911":null,"SJAG_04031":null,"SJAG_04032":null,"SJAG_04067":null,"SJAG_04677":null,"SJAG_04725":null,"SJAG_04743":null,"SJAG_04873":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to nutrient levels","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0031669","terms_by_termid":{"GO:0000433":null,"GO:0009267":null,"GO:0010106":null,"GO:0016036":null,"GO:0031142":null,"GO:0034198":null,"GO:0036245":null,"GO:0042149":null,"GO:1901481":null,"GO:1901482":null,"GO:1904547":null,"GO:1905287":null}}


id: PBO:0028739
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-hercynine_absent_from_cell","termid":"PBO:0028739"}


id: GO:0035115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process, occurring in the embryo, by which the anatomical structures of the forelimb are generated and organized. The forelimbs are the front limbs of an animal, e.g. the arms of a human.","definition_xrefs":["ISBN:0198612001"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic limb morphogenesis","termid":"GO:0030326"},{"relation_name":"is_a","term_name":"forelimb morphogenesis","termid":"GO:0035136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic forelimb morphogenesis","secondary_identifiers":["GO:0035117"],"synonyms":[{"name":"embryonic arm morphogenesis","type":"narrow"}],"termid":"GO:0035115"}


id: PBO:0038971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADORA2A antisense RNA 1","termid":"PBO:0038971"}


id: PATO:0001974
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's terminating in a round end, the centre of which is depressed.","definition_xrefs":["ISBN:0881923214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"blunt","termid":"PATO:0001950"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retuse","termid":"PATO:0001974"}


id: PBO:0048965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycosylphosphatidylinositol anchor attachment 1","termid":"PBO:0048965"}


id: PBO:0049666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-hydroxyanthranilate 3,4-dioxygenase","termid":"PBO:0049666"}


id: PBO:0079633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBE2Q2 pseudogene 4, Y-linked","termid":"PBO:0079633"}


id: PBO:0038498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily C member 6 pseudogene 2","termid":"PBO:0038498"}


id: MOD:01430
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that forms an adduct with a (13)C labeled compound used as a reagent.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope tagged reagent derivatized residue","termid":"MOD:01426"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(18)O isotope tagged reagent","termid":"MOD:01430"}


id: GO:0000763
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The change in form (cell shape and size) that occurs during sexual reproduction in order to facilitate direct contact between the compatible mating types in organisms that undergo unidirectional conjugation.","definition_xrefs":["GOC:clt"],"gene_count":0,"genotype_count":0,"name":"obsolete cell morphogenesis involved in unidirectional conjugation (obsolete GO:0000763)","synonyms":[{"name":"cell morphogenesis involved in unidirectional conjugation","type":"exact"}],"termid":"GO:0000763"}


id: GO:1905722
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of trypanothione biosynthetic process.","definition_xrefs":["GOC:TermGenie","PMID:18949025","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of sulfur metabolic process","termid":"GO:0042762"},{"relation_name":"regulates","term_name":"trypanothione biosynthetic process","termid":"GO:0019342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"regulation of trypanothione biosynthetic process","synonyms":[{"name":"regulation of trypanothione anabolism","type":"exact"},{"name":"regulation of trypanothione biosynthesis","type":"exact"},{"name":"regulation of trypanothione formation","type":"exact"},{"name":"regulation of trypanothione synthesis","type":"exact"}],"termid":"GO:1905722"}


id: PBO:0040146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"asialoglycoprotein receptor 1","termid":"PBO:0040146"}


id: PBO:0070053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 10, pseudogene","termid":"PBO:0070053"}


id: PATO:0000991
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000991 inconsistent (obsolete PATO:0000991)","termid":"PATO:0000991"}


id: GO:0005038
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete death receptor interacting protein activity (obsolete GO:0005038)","synonyms":[{"name":"death receptor interacting protein activity","type":"exact"}],"termid":"GO:0005038"}


id: GO:0050742
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a protein-FMN linkage via S-(4a-FMN)-L-cysteine.","definition_xrefs":["RESID:AA0351"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-FMN linkage via S-(4a-FMN)-L-cysteine (obsolete GO:0050742)","termid":"GO:0050742"}


id: PBO:0069176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 430, pseudogene","termid":"PBO:0069176"}


id: GO:0072645
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of interferon-delta due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:BHF","GOC:mah","PMID:15546383"],"direct_ancestors":[{"relation_name":"is_a","term_name":"type I interferon production","termid":"GO:0032606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"interferon-delta production","secondary_identifiers":["GO:0072646"],"synonyms":[{"name":"IFN-delta production","type":"exact"},{"name":"IFND production","type":"exact"},{"name":"interferon-delta secretion","type":"narrow"}],"termid":"GO:0072645"}


id: GO:0070536
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A protein deubiquitination process in which a K63-linked ubiquitin chain, i.e. a polymer of ubiquitin formed by linkages between lysine residues at position 63 of the ubiquitin monomers, is removed from a protein.","definition_xrefs":["GOC:mah","PMID:19202061","PMID:19214193"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein deubiquitination","termid":"GO:0016579"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"protein K63-linked deubiquitination","termid":"GO:0070536"}


id: GO:1990790
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glial cell derived neurotrophic factor stimulus.","definition_xrefs":["PMID:20877310"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to growth factor","termid":"GO:0070848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to glial cell derived neurotrophic factor","synonyms":[{"name":"response to ATF","type":"exact"},{"name":"response to GDNF","type":"exact"},{"name":"response to astrocyte-derived trophic factor","type":"exact"}],"termid":"GO:1990790"}


id: GO:2001023
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of response to drug.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stimulus","termid":"GO:0048583"},{"relation_name":"regulates","term_name":"response to xenobiotic stimulus","termid":"GO:0009410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of response to drug","synonyms":[{"name":"regulation of drug resistance","type":"related"},{"name":"regulation of drug susceptibility/resistance","type":"related"}],"termid":"GO:2001023"}


id: PBO:0088697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRAPP III complex subunit Trs85a","termid":"PBO:0088697"}


id: PBO:0005317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U1 snRNP-associated protein Usp106","termid":"PBO:0005317"}


id: CHEBI:16238
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAD","termid":"CHEBI:16238"}


id: GO:1900200
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any mesenchymal cell apoptotic process that is involved in metanephros development.","definition_xrefs":["GOC:mtg_apoptosis","GOC:TermGenie","GOC:mtg_kidney_jan10","PMID:17314325","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchymal cell apoptotic process","termid":"GO:0097152"},{"relation_name":"is_a","term_name":"apoptotic process involved in development","termid":"GO:1902742"},{"relation_name":"part_of","term_name":"metanephros development","termid":"GO:0001656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal cell apoptotic process involved in metanephros development","synonyms":[{"name":"mesenchymal cell apoptosis involved in metanephros development","type":"narrow"}],"termid":"GO:1900200"}


id: PBO:0085984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; required for efficient 5' processing of mitochondrial tRNAs, for respiratory growth and mitochondrial genome maintenance; null mutant has decreased levels of cardiolipin and phosphatidylethanolamine; localizes to the matrix side of the inner mitochondrial membrane","termid":"PBO:0085984"}


id: PBO:0031694
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_nuclear_import","termid":"PBO:0031694"}


id: GO:0070651
data:
  {"annotated_genes":["SJAG_04283","SJAG_04818","SJAG_04321","SJAG_00854","SJAG_01191","SJAG_01818","SJAG_03179","SJAG_04006","SJAG_03728","SJAG_03507","SJAG_04084","SJAG_01521","SJAG_03745","SJAG_04824","SJAG_04153"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88314,89132,91987,93319,93564,98132,100445,101290,102498,103496,103590,111476,111923,112071,114298],"is_not":false,"summary":null,"term":"GO:0070651"}]},"cv_name":"biological_process","definition":"An rRNA catabolic process that results in the targeted detection and degradation of aberrant rRNAs contained within translationally defective ribosomes, thereby acting as a quality-control system.","definition_xrefs":["GOC:rn","PMID:17188037","GOC:mah","PMID:19390089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA catabolic process","termid":"GO:0016075"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00854":null,"SJAG_01191":null,"SJAG_01521":null,"SJAG_01818":null,"SJAG_03179":null,"SJAG_03507":null,"SJAG_03728":null,"SJAG_03745":null,"SJAG_04006":null,"SJAG_04084":null,"SJAG_04153":null,"SJAG_04283":null,"SJAG_04321":null,"SJAG_04818":null,"SJAG_04824":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nonfunctional rRNA decay","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"NRD","type":"related"}],"termid":"GO:0070651","terms_by_termid":{"GO:0070651":null}}


id: GO:1990576
data:
  {"annotated_genes":["SJAG_01699"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[111566],"is_not":false,"summary":null,"term":"GO:1990576"}]},"cv_name":"molecular_function","definition":"Combining with an extracellular glucose molecule and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.","definition_xrefs":["PMID:15667320"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01699":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"G protein-coupled glucose receptor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"G-protein coupled glucose receptor activity","type":"exact"}],"termid":"GO:1990576","terms_by_termid":{"GO:1990576":null}}


id: PBO:0068469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 46, pseudogene","termid":"PBO:0068469"}


id: PBO:0050467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HOX transcript antisense RNA","termid":"PBO:0050467"}


id: GO:1990522
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the nematode tail spike is generated and organized. An example of this process is seen in C. elegans, where the tapered tail spike is formed during embryogenesis by a filamentous process that passes posteriorly through hyp10, the tail ventral hypodermis; the filamentous process is formed by a binucleate cell, the tail-spike cell, that subsequently undergoes programmed cell death.","definition_xrefs":["PMID:17329362","GOC:kmv","PMID:6684600"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tail spike morphogenesis","secondary_identifiers":["WBbt:0008072","WBbt:0006979"],"termid":"GO:1990522"}


id: PBO:0061550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-nucleotidase, cytosolic IIIA","termid":"PBO:0061550"}


id: FYPO:0007255
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of replication fork processing is decreased. Replication fork processing is process in which a DNA replication fork that has stalled (due to DNA damage, DNA secondary structure, bound proteins, dNTP shortage, or other causes) is repaired and replication is restarted.","definition_xrefs":["PomBase:mah","GO:0031297"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal replication fork processing","termid":"FYPO:0003586"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000293","FYPO:0005447"],"is_obsolete":false,"name":"decreased replication fork processing","synonyms":[{"name":"decreased HR-mediated fork restart","type":"related"},{"name":"decreased collapsed replication fork processing","type":"exact"},{"name":"decreased recovery from replication fork arrest","type":"exact"},{"name":"decreased recovery from replication fork stalling","type":"exact"},{"name":"decreased replication fork processing during mitotic cell cycle","type":"related"},{"name":"decreased replication fork processing during vegetative growth","type":"exact"},{"name":"decreased replication fork restart","type":"related"},{"name":"decreased replication restart","type":"related"},{"name":"reduced replication fork processing","type":"exact"}],"termid":"FYPO:0007255"}


id: GO:0007556
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving juvenile hormone.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of isoprenoid metabolic process","termid":"GO:0019747"},{"relation_name":"is_a","term_name":"regulation of hormone metabolic process","termid":"GO:0032350"},{"relation_name":"is_a","term_name":"regulation of secondary metabolic process","termid":"GO:0043455"},{"relation_name":"part_of","term_name":"instar larval or pupal development","termid":"GO:0002165"},{"relation_name":"regulates","term_name":"juvenile hormone metabolic process","termid":"GO:0006716"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"regulation of juvenile hormone metabolic process","synonyms":[{"name":"regulation of juvenile hormone metabolism","type":"exact"}],"termid":"GO:0007556"}


id: PR:Q09871
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC12G12.07c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09871"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C12G12.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC12G12.07c","synonyms":[{"name":"Spom972h-SPAC12G12.07c","type":"exact"}],"termid":"PR:Q09871"}


id: PBO:0073900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 14 member 1 (Kidd blood group)","termid":"PBO:0073900"}


id: PBO:0059730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 4","termid":"PBO:0059730"}


id: MOD:00003
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Entry from Unimod.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uncategorized protein modification","termid":"MOD:00032"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Unimod","termid":"MOD:00003"}


id: PR:Q9C108
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAPB1E7.01c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9C108"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein PB1E7.01c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB1E7.01c","synonyms":[{"name":"Spom972h-SPAPB1E7.01c","type":"exact"}],"termid":"PR:Q9C108"}


id: FYECO:0000272
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"}},"annotation_feature_type":"gene","cv_annotations":{"fission_yeast_phenotype_condition":[{"annotations":[115202,115214],"is_not":false,"summary":null,"term":"FYECO:0000272"}]},"cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in medium containing glucose (typically <2% w/v), salts, water and with no nitrogen source.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_02592":null},"genotype_count":2,"genotypes_by_uniquename":{"atf1delta":{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"is_obsolete":false,"name":"glucose MM, no nitrogen","references_by_uniquename":{"PMID:31150379":null},"single_locus_annotated_genes":["SJAG_02592","SJAG_00266"],"single_locus_genotype_uniquenames":["sty1delta","atf1delta"],"termid":"FYECO:0000272","terms_by_termid":{"FYECO:0000272":null,"FYPO_EXT:0000001":null}}


id: GO:0003725
data:
  {"annotated_genes":["SJAG_01643","SJAG_04410","SJAG_03689","SJAG_04700","SJAG_04019","SJAG_04369","SJAG_02156","SJAG_04527"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[60762,98229,103352,104536,105888,111721,112033,114625],"is_not":false,"summary":null,"term":"GO:0003725"}]},"cv_name":"molecular_function","definition":"Binding to double-stranded RNA.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA binding","termid":"GO:0003723"}],"gene_count":8,"genes_by_uniquename":{"SJAG_01643":null,"SJAG_02156":null,"SJAG_03689":null,"SJAG_04019":null,"SJAG_04369":null,"SJAG_04410":null,"SJAG_04527":null,"SJAG_04700":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003723","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"double-stranded RNA binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"synonyms":[{"name":"dsRNA binding","type":"exact"}],"termid":"GO:0003725","terms_by_termid":{"GO:0003725":null}}


id: PBO:0058553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6132","termid":"PBO:0058553"}


id: GO:0160093
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of cordate pharynx over time, from its formation to the mature structure.","definition_xrefs":["PMID:23020903"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pharynx development","termid":"GO:0060465"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chordate pharynx development","termid":"GO:0160093"}


id: GO:0042496
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a diacylated bacterial lipopeptide stimulus is received by a cell and converted into a molecular signal. Diacylated bacterial lipoproteins are lipopeptides of bacterial origin containing a nonprotein moiety consisting of two acyl groups.","definition_xrefs":["PMID:12077222","PMID:2757794","GOC:add","PMID:12524386"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of bacterial lipopeptide","termid":"GO:0070340"},{"relation_name":"is_a","term_name":"response to diacyl bacterial lipopeptide","termid":"GO:0071724"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of diacyl bacterial lipopeptide","synonyms":[{"name":"detection of diacylated bacterial lipoprotein","type":"exact"},{"name":"perception of diacylated bacterial lipopeptide","type":"related"},{"name":"perception of diacylated bacterial lipoprotein","type":"related"}],"termid":"GO:0042496"}


id: PBO:0003622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RINT1 family protein (predicted)","termid":"PBO:0003622"}


id: GO:0098938
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The actin cytoskeleton that is part of a dendritic spine.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeleton of dendritic spine","termid":"GO:0098836"},{"relation_name":"is_a","term_name":"postsynaptic actin cytoskeleton","termid":"GO:0098871"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0015629"}],"interesting_parent_ids":["GO:0015629","GO:0005575"],"is_obsolete":false,"name":"actin cytoskeleton of dendritic spine","termid":"GO:0098938"}


id: PBO:0047107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 156 member B","termid":"PBO:0047107"}


id: PBO:0044519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DAAM2 antisense RNA 1","termid":"PBO:0044519"}


id: PBO:0059473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MSL complex subunit 3","termid":"PBO:0059473"}


id: FYPO:0001000
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the mitotic cell cycle is arrested normally in G1 phase when the cell is subject to nitrogen starvation.","definition_xrefs":["PMID:19366728","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cell cycle arrest in mitotic G1 phase in response to nitrogen starvation","termid":"FYPO:0000711"},{"relation_name":"is_a","term_name":"normally arrested mitotic cell cycle progression","termid":"FYPO:0001025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0000257","FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"normal cell cycle arrest in mitotic G1 phase during nitrogen starvation","synonyms":[{"name":"mitotic G1 phase arrest during nitrogen starvation","type":"exact"},{"name":"normal cell cycle arrest in mitotic G1 phase during nitrogen depletion","type":"exact"},{"name":"normal cell cycle arrest in mitotic G1 phase during nitrogen deprivation","type":"exact"},{"name":"normal mitotic cell cycle arrest in G1 phase during nitrogen starvation","type":"exact"}],"termid":"FYPO:0001000"}


id: GO:0016776
data:
  {"annotated_genes":["SJAG_04849","SJAG_01080","SJAG_00244","SJAG_03798","SJAG_04657","SJAG_02420","SJAG_00779","SJAG_02038","SJAG_02421","SJAG_01474","SJAG_04282","SJAG_02321","SJAG_02887"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[111612],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004127"},{"annotations":[114615,94202],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004017"},{"annotations":[98294],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004385"},{"annotations":[111095],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000829"},{"annotations":[111096],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052723"},{"annotations":[111097,114823],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000828"},{"annotations":[114034,96127],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004550"},{"annotations":[109639,109645,112065],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008972"},{"annotations":[92665],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004631"},{"annotations":[110557],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008976"},{"annotations":[114035],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004798"},{"annotations":[111614],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033862"},{"annotations":[114036],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009041"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to a phosphate group (acceptor).","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring phosphorus-containing groups","termid":"GO:0016772"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00244":null,"SJAG_00779":null,"SJAG_01080":null,"SJAG_01474":null,"SJAG_02038":null,"SJAG_02321":null,"SJAG_02420":null,"SJAG_02421":null,"SJAG_02887":null,"SJAG_03798":null,"SJAG_04282":null,"SJAG_04657":null,"SJAG_04849":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"phosphotransferase activity, phosphate group as acceptor","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:2.7.4.-"],"termid":"GO:0016776","terms_by_termid":{"GO:0000828":null,"GO:0000829":null,"GO:0004017":null,"GO:0004127":null,"GO:0004385":null,"GO:0004550":null,"GO:0004631":null,"GO:0004798":null,"GO:0008972":null,"GO:0008976":null,"GO:0009041":null,"GO:0033862":null,"GO:0052723":null}}


id: SO:1001268
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA.","direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA_region","termid":"SO:0000836"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recoding_stimulatory_region","synonyms":[{"name":"INSDC_feature:regulatory","type":"broad"},{"name":"INSDC_qualifier:recoding_stimulatory_region","type":"exact"},{"name":"recoding stimulatory region","type":"exact"},{"name":"recoding stimulatory signal","type":"exact"}],"termid":"SO:1001268"}


id: PBO:0083709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER-membrane protein; subunit of evolutionarily conserved EMC (Endoplasmic Reticulum Membrane Complex) implicated in ERAD (ER-associated degradation) and proper assembly of multi-pass transmembrane (TM) proteins; EMC acts in yeast as an ER-mitochondria tether that interacts with outer membrane protein Tom5 of TOM (Translocase of the Mitochondrial Outer Membrane) complex; suppressor of pma1-7, deletion of SOP4 slows down export of wild-type Pma1p and Pma1-7 from the ER","termid":"PBO:0083709"}


id: PBO:0085421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane transporter responsible for the uptake of thiamine; contributes to uptake of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranoside (acadesine); member of the major facilitator superfamily of transporters; mutation of human ortholog causes thiamine-responsive megaloblastic anemia","termid":"PBO:0085421"}


id: PBO:0088746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3.3-H4 chaperone, HIR complex WD repeat subunit Hip2","termid":"PBO:0088746"}


id: PBO:0029081
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_spindle_pole_body","termid":"PBO:0029081"}


id: PBO:0058337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4711","termid":"PBO:0058337"}


id: GO:0021524
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of visceral motor neurons. Visceral motor neurons innervate glandular targets and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate.","definition_xrefs":["PMID:11262869","GO_REF:0000021","GOC:dgh","GOC:dph","GOC:cls","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spinal cord motor neuron differentiation","termid":"GO:0021522"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"visceral motor neuron differentiation","termid":"GO:0021524"}


id: PBO:0066787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 86","termid":"PBO:0066787"}


id: GO:0071666
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein-carbohydrate complex that consists of a transmembrane roundabout (Robo) receptor, an extracellular Slit ligand and heparin/heparan sulfate.","definition_xrefs":["GOC:sart","PMID:17062560","PMID:18359766"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-carbohydrate complex","termid":"GO:0032992"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Slit-Robo signaling complex","synonyms":[{"name":"Slit-Robo signalling complex","type":"exact"}],"termid":"GO:0071666"}


id: PBO:0038718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin gamma 1 pseudogene 13","termid":"PBO:0038718"}


id: GO:0070598
data:
  {"annotated_genes":["SJAG_04184","SJAG_04666","SJAG_00424","SJAG_01028","SJAG_03057","SJAG_04236","SJAG_02278","SJAG_02916","SJAG_00610"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110421,100226,105121,113804,85251],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070600"},{"annotations":[91009,98903,85542,88495],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0070610"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of (1->3)-alpha-D-glucans, compounds composed of glucose residues linked by (1->3)-alpha-glucosidic bonds, found in the walls of cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall polysaccharide biosynthetic process","termid":"GO:0070592"},{"relation_name":"is_a","term_name":"(1->3)-alpha-glucan biosynthetic process","termid":"GO:0070596"},{"relation_name":"is_a","term_name":"cell wall (1->3)-alpha-glucan metabolic process","termid":"GO:0070597"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00424":null,"SJAG_00610":null,"SJAG_01028":null,"SJAG_02278":null,"SJAG_02916":null,"SJAG_03057":null,"SJAG_04184":null,"SJAG_04236":null,"SJAG_04666":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0071554","GO:0005975"],"is_obsolete":false,"name":"cell wall (1->3)-alpha-glucan biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cell wall 1,3-alpha-glucan anabolism","type":"exact"},{"name":"cell wall 1,3-alpha-glucan biosynthesis","type":"exact"},{"name":"cell wall 1,3-alpha-glucan biosynthetic process","type":"exact"},{"name":"cell wall 1,3-alpha-glucan formation","type":"exact"},{"name":"cell wall 1,3-alpha-glucan synthesis","type":"exact"},{"name":"cell wall alpha-1,3-glucan anabolism","type":"exact"},{"name":"cell wall alpha-1,3-glucan biosynthesis","type":"exact"},{"name":"cell wall alpha-1,3-glucan biosynthetic process","type":"exact"},{"name":"cell wall alpha-1,3-glucan formation","type":"exact"},{"name":"cell wall alpha-1,3-glucan synthesis","type":"exact"}],"termid":"GO:0070598","terms_by_termid":{"GO:0070600":null,"GO:0070610":null}}


id: GO:0031858
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a pituitary adenylate cyclase-activating polypeptide receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor binding","termid":"GO:0071855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"pituitary adenylate cyclase-activating polypeptide receptor binding","synonyms":[{"name":"PACAP receptor binding","type":"exact"},{"name":"pituitary adenylate cyclase activating peptide receptor binding","type":"exact"},{"name":"pituitary adenylate cyclase-activating peptide receptor ligand","type":"narrow"}],"termid":"GO:0031858"}


id: PBO:0072110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S13 pseudogene 8","termid":"PBO:0072110"}


id: GO:0075732
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The crossing by the virus of the host nuclear membrane, either as naked viral genome or for small viruses as an intact capsid.","definition_xrefs":["PMID:22929056","VZ:989"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular transport of virus","termid":"GO:0075733"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral penetration into host nucleus","synonyms":[{"name":"viral entry into host nucleus","type":"exact"},{"name":"viral import into host nucleus","type":"exact"}],"termid":"GO:0075732"}


id: GO:0008213
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of an alkyl group to a protein amino acid. Alkyl groups are derived from alkanes by removal of one hydrogen atom.","definition_xrefs":["GOC:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein alkylation","synonyms":[{"name":"protein amino acid alkylation","type":"exact"}],"termid":"GO:0008213"}


id: FYPO:0000728
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch assembly is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cortical patch organization","termid":"FYPO:0000790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0004803","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal actin cortical patch assembly","synonyms":[{"name":"abnormal F-actin patch assembly","type":"exact"},{"name":"abnormal actin cortical patch assembly during mitotic cell cycle","type":"related"},{"name":"abnormal actin cortical patch assembly during vegetative growth","type":"exact"},{"name":"abnormal actin patch assembly","type":"exact"}],"termid":"FYPO:0000728"}


id: PBO:0063488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDK4 antisense RNA 1","termid":"PBO:0063488"}


id: GO:0038174
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with the cytokine interleukin-17A and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:bf","GOC:jc","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interleukin-17 receptor activity","termid":"GO:0030368"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"interleukin-17A receptor activity","termid":"GO:0038174"}


id: PBO:0043938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CREB regulated transcription coactivator 2","termid":"PBO:0043938"}


id: GO:1901548
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of synaptic vesicle lumen acidification.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of synaptic vesicle lumen acidification","termid":"GO:1901546"},{"relation_name":"is_a","term_name":"positive regulation of cation transmembrane transport","termid":"GO:1904064"},{"relation_name":"positively_regulates","term_name":"synaptic vesicle lumen acidification","termid":"GO:0097401"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of synaptic vesicle lumen acidification","synonyms":[{"name":"activation of synaptic vesicle lumen acidification","type":"narrow"},{"name":"activation of synaptic vesicle lumen pH reduction","type":"narrow"},{"name":"positive regulation of proton loading","type":"exact"},{"name":"positive regulation of synaptic vesicle lumen pH reduction","type":"exact"},{"name":"up regulation of synaptic vesicle lumen acidification","type":"exact"},{"name":"up regulation of synaptic vesicle lumen pH reduction","type":"exact"},{"name":"up-regulation of synaptic vesicle lumen acidification","type":"exact"},{"name":"up-regulation of synaptic vesicle lumen pH reduction","type":"exact"},{"name":"upregulation of synaptic vesicle lumen acidification","type":"exact"},{"name":"upregulation of synaptic vesicle lumen pH reduction","type":"exact"}],"termid":"GO:1901548"}


id: PBO:0087969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transverse filament protein of the synaptonemal complex; required for normal levels of meiotic recombination and pairing between homologous chromosome during meiosis; required for meiotic recombination between non-allelc sites; potential Cdc28p substrate","termid":"PBO:0087969"}


id: PBO:0089137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-phosphatidylinositol 4-kinase Lsb6","termid":"PBO:0089137"}


id: GO:0052141
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of a specific chemical on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete positive chemotaxis on or near host (obsolete GO:0052141)","termid":"GO:0052141"}


id: GO:1904278
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of wax biosynthetic process.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:24692420"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of lipid biosynthetic process","termid":"GO:0046889"},{"relation_name":"is_a","term_name":"regulation of wax biosynthetic process","termid":"GO:1904276"},{"relation_name":"positively_regulates","term_name":"wax biosynthetic process","termid":"GO:0010025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"positive regulation of wax biosynthetic process","synonyms":[{"name":"activation of wax anabolism","type":"narrow"},{"name":"activation of wax biosynthesis","type":"narrow"},{"name":"activation of wax biosynthetic process","type":"narrow"},{"name":"activation of wax formation","type":"narrow"},{"name":"activation of wax synthesis","type":"narrow"},{"name":"positive regulation of wax anabolism","type":"exact"},{"name":"positive regulation of wax biosynthesis","type":"exact"},{"name":"positive regulation of wax formation","type":"exact"},{"name":"positive regulation of wax synthesis","type":"exact"},{"name":"up regulation of wax anabolism","type":"exact"},{"name":"up regulation of wax biosynthesis","type":"exact"},{"name":"up regulation of wax biosynthetic process","type":"exact"},{"name":"up regulation of wax formation","type":"exact"},{"name":"up regulation of wax synthesis","type":"exact"},{"name":"up-regulation of wax anabolism","type":"exact"},{"name":"up-regulation of wax biosynthesis","type":"exact"},{"name":"up-regulation of wax biosynthetic process","type":"exact"},{"name":"up-regulation of wax formation","type":"exact"},{"name":"up-regulation of wax synthesis","type":"exact"},{"name":"upregulation of wax anabolism","type":"exact"},{"name":"upregulation of wax biosynthesis","type":"exact"},{"name":"upregulation of wax biosynthetic process","type":"exact"},{"name":"upregulation of wax formation","type":"exact"},{"name":"upregulation of wax synthesis","type":"exact"}],"termid":"GO:1904278"}


id: FYPO:0006999
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a protein that is normally dynamically localized to a specific place in the cell shows a normal (i.e. indistinguishable from wild type) temporal pattern of localization. For example, a protein may move to or from the location more or less frequently than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000257","FYPO:0000138"],"is_obsolete":false,"name":"normal dynamic protein localization pattern","synonyms":[{"name":"normal dynamic pattern of protein localization","type":"exact"},{"name":"normal dynamic protein localisation pattern","type":"exact"},{"name":"normal temporal protein localization pattern","type":"related"}],"termid":"FYPO:0006999"}


id: PBO:0090288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin/importin beta family nuclear import/export signal receptor Nmd5","termid":"PBO:0090288"}


id: PBO:0063360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate cancer expressed EZH2 associated transcript","termid":"PBO:0063360"}


id: PBO:0076562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 3C","termid":"PBO:0076562"}


id: GO:0097151
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of inhibitory postsynaptic potential (IPSP). IPSP is a temporary decrease in postsynaptic membrane potential due to the flow of negatively charged ions into the postsynaptic cell. The flow of ions that causes an IPSP is an inhibitory postsynaptic current (IPSC) and makes it more difficult for the neuron to fire an action potential.","definition_xrefs":["GOC:BHF","GOC:sjp","PMID:18550748"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of nervous system process","termid":"GO:0031646"},{"relation_name":"is_a","term_name":"modulation of inhibitory postsynaptic potential","termid":"GO:0098828"},{"relation_name":"positively_regulates","term_name":"inhibitory postsynaptic potential","termid":"GO:0060080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of inhibitory postsynaptic potential","synonyms":[{"name":"positive regulation of IPSP","type":"exact"},{"name":"positive regulation of inhibitory post-synaptic membrane potential","type":"exact"}],"termid":"GO:0097151"}


id: PBO:0044483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 26 subfamily C member 1","termid":"PBO:0044483"}


id: PBO:0041524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 16 open reading frame 82","termid":"PBO:0041524"}


id: PBO:0069380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 640, pseudogene","termid":"PBO:0069380"}


id: PBO:0045469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dopamine receptor D5 pseudogene 1","termid":"PBO:0045469"}


id: GO:1902650
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of histone H2A-H2B dimer displacement.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:22199252","GOC:di"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone H2A-H2B dimer displacement (obsolete GO:1902650)","synonyms":[{"name":"down regulation of histone H2A-H2B dimer displacement","type":"exact"},{"name":"down-regulation of histone H2A-H2B dimer displacement","type":"exact"},{"name":"downregulation of histone H2A-H2B dimer displacement","type":"exact"},{"name":"inhibition of histone H2A-H2B dimer displacement","type":"narrow"}],"termid":"GO:1902650"}


id: FYPO:0007310
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 12 of histone H4 in centromere outer repeat regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H4 acetylation at centromere outer repeat during vegetative growth","termid":"FYPO:0002382"},{"relation_name":"is_a","term_name":"increased histone H4-K12 acetylation at centromere during vegetative growth","termid":"FYPO:0007306"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0002274","FYPO:0001320"],"is_obsolete":false,"name":"increased histone H4-K12 acetylation at centromere outer repeat during vegetative growth","synonyms":[{"name":"increased histone H4-K12 acetylation at centromere otr during vegetative growth","type":"exact"},{"name":"increased histone H4-K12 acetylation at centromere outer repeat during mitotic cell cycle","type":"related"},{"name":"increased histone H4-K12 acetylation at centromeric outer repeat region during vegetative growth","type":"exact"},{"name":"increased histone H4-K12 acetylation at pericentric region during vegetative growth","type":"related"},{"name":"increased histone H4-K12 acetylation at pericentromeric region during vegetative growth","type":"related"},{"name":"increased histone H4K12 acetylation at centromere outer repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0007310"}


id: PBO:0089716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat containing cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp9","termid":"PBO:0089716"}


id: PBO:0061017
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIFK antisense RNA 1","termid":"PBO:0061017"}


id: GO:1903815
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of collecting lymphatic vessel constriction.","definition_xrefs":["GOC:TermGenie","PMID:23897233","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of collecting lymphatic vessel constriction","termid":"GO:1903814"},{"relation_name":"negatively_regulates","term_name":"collecting lymphatic vessel constriction","termid":"GO:1990192"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of collecting lymphatic vessel constriction","synonyms":[{"name":"down regulation of collecting lymphatic vessel constriction","type":"exact"},{"name":"down regulation of lymphatic vessel myogenic constriction","type":"exact"},{"name":"down-regulation of collecting lymphatic vessel constriction","type":"exact"},{"name":"down-regulation of lymphatic vessel myogenic constriction","type":"exact"},{"name":"downregulation of collecting lymphatic vessel constriction","type":"exact"},{"name":"downregulation of lymphatic vessel myogenic constriction","type":"exact"},{"name":"inhibition of collecting lymphatic vessel constriction","type":"narrow"},{"name":"inhibition of lymphatic vessel myogenic constriction","type":"narrow"},{"name":"negative regulation of lymphatic vessel myogenic constriction","type":"exact"}],"termid":"GO:1903815"}


id: PBO:0051691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"INO80 antisense RNA 1","termid":"PBO:0051691"}


id: PBO:0088616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial outer membrane protein, TspO/MBR-related, implicated in lipid/sterol transport, tspO","termid":"PBO:0088616"}


id: PR:O74874
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ccr4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74874"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose-repressible alcohol dehydrogenase transcriptional effector (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC31H12.08c","synonyms":[{"name":"Spom972h-ccr4","type":"exact"},{"name":"carbon catabolite repressor protein 4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"cytoplasmic deadenylase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74874"}


id: FYECO:0000405
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which isoleucine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ ile","synonyms":[{"name":"isoleucine added","type":"exact"}],"termid":"FYECO:0000405"}


id: FYPO:0007901
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA-DNA hybrid molecules is greater than normal.","definition_xrefs":["PMID:29622660"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell during vegetative growth","termid":"FYPO:0001323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased number of R-loops","synonyms":[{"name":"increased level of R-loops","type":"exact"},{"name":"increased level of RNA-DNA hybrids","type":"exact"}],"termid":"FYPO:0007901"}


id: PR:P09202
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A fructose-1,6-bisphosphatase class 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fructose-1,6-bisphosphatase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1198.14c","secondary_identifiers":["UniProtKB:P09202"],"synonyms":[{"name":"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"FBPase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPBC1198.14c","type":"related"},{"name":"Spom972h-fbp","type":"exact"}],"termid":"PR:P09202"}


id: PBO:0034054
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-continuous_with","termid":"PBO:0034054"}


id: GO:0035394
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of chemokine (C-X-C motif) ligand 9.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of chemokine production","termid":"GO:0032642"},{"relation_name":"regulates","term_name":"chemokine (C-X-C motif) ligand 9 production","termid":"GO:0035393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of chemokine (C-X-C motif) ligand 9 production","synonyms":[{"name":"regulation of CXCL9 production","type":"exact"},{"name":"regulation of MIG production","type":"exact"}],"termid":"GO:0035394"}


id: PBO:0072191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S17 pseudogene 8","termid":"PBO:0072191"}


id: PBO:0077955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon AGC) 12-2","termid":"PBO:0077955"}


id: PR:P36586
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ypt5 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P36586"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"},{"relation_name":"is_a","term_name":"GTP-binding protein ypt5 (Schizosaccharomyces pombe)","termid":"PR:000030005"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP-binding protein ypt5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F6.15","synonyms":[{"name":"SPAC6F6.15","type":"related"},{"name":"Spom972h-ypt5","type":"exact"}],"termid":"PR:P36586"}


id: GO:0047524
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 16-alpha-hydroxysteroid = 16-beta-hydroxysteroid.","definition_xrefs":["EC:5.1.99.2","MetaCyc:16-HYDROXYSTEROID-EPIMERASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity","termid":"GO:0016854"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"16-hydroxysteroid epimerase activity","secondary_identifiers":["RHEA:15829"],"synonyms":[{"name":"16-hydroxysteroid 16-epimerase activity","type":"related"}],"termid":"GO:0047524"}


id: PR:Q10478
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A sorting and assembly machinery component 50 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12815:SF6","OMA:SCHPO01861","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAM50-like protein SPAC17C9.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17C9.06","secondary_identifiers":["UniProtKB:Q10478"],"synonyms":[{"name":"Spom972h-SAMM50","type":"exact"}],"termid":"PR:Q10478"}


id: PBO:0082789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the TREX complex required for nuclear mRNA export; member of the DEAD-box RNA helicase superfamily and is involved in early and late steps of spliceosome assembly; homolog of the human splicing factor hUAP56; relocalizes from nucleus to cytoplasm upon DNA replication stress","termid":"PBO:0082789"}


id: PBO:0081307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 90 pseudogene 2","termid":"PBO:0081307"}


id: GO:0060764
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that mediates the transfer of information from one cell to another and contributes to the progression of the mammary gland, from its initial state to the mature structure.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling","termid":"GO:0007267"},{"relation_name":"part_of","term_name":"mammary gland development","termid":"GO:0030879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"cell-cell signaling involved in mammary gland development","synonyms":[{"name":"cell-cell signalling involved in mammary gland development","type":"exact"}],"termid":"GO:0060764"}


id: PBO:0045085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"delta like canonical Notch ligand 3","termid":"PBO:0045085"}


id: GO:0061525
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the hindgut over time, from its formation to the mature structure. The hindgut is part of the alimentary canal that lies posterior to the midgut.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"digestive tract development","termid":"GO:0048565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hindgut development","termid":"GO:0061525"}


id: GO:2000611
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of thyroid hormone generation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular metabolic process","termid":"GO:0031325"},{"relation_name":"is_a","term_name":"positive regulation of hormone metabolic process","termid":"GO:0032352"},{"relation_name":"is_a","term_name":"regulation of thyroid hormone generation","termid":"GO:2000609"},{"relation_name":"positively_regulates","term_name":"thyroid hormone generation","termid":"GO:0006590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of thyroid hormone generation","termid":"GO:2000611"}


id: PBO:0046838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid binding protein 5 pseudogene 11","termid":"PBO:0046838"}


id: SO:0000890
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that is post translationally regulated.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"post_translationally_regulated","termid":"SO:0000130"},{"relation_name":"is_a","term_name":"gene","termid":"SO:0000704"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"post_translationally_regulated_gene","synonyms":[{"name":"post translationally regulated gene","type":"exact"}],"termid":"SO:0000890"}


id: PBO:0004466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contractile ring protein Imp2","termid":"PBO:0004466"}


id: PBO:0071738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 36","termid":"PBO:0071738"}


id: PBO:0084020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycosylphosphatidylinositol-alpha 1,4 mannosyltransferase I; involved in GPI anchor biosynthesis, requires Pbn1p for function; homolog of mammalian PIG-M","termid":"PBO:0084020"}


id: PBO:0088371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contractile ring-membrane anchor Fic1","termid":"PBO:0088371"}


id: GO:0047534
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-acetolactate = 3-hydroxy-3-methyl-2-oxobutanoate.","definition_xrefs":["MetaCyc:2-ACETOLACTATE-MUTASE-RXN","EC:5.4.99.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular transferase activity","termid":"GO:0016866"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"2-acetolactate mutase activity","secondary_identifiers":["RHEA:16361"],"synonyms":[{"name":"2-acetolactate methylmutase activity","type":"related"},{"name":"acetohydroxy acid isomerase activity","type":"broad"},{"name":"acetolactate mutase activity","type":"related"}],"termid":"GO:0047534"}


id: GO:2000635
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of primary microRNA processing.","definition_xrefs":["GOC:dph","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of miRNA processing","termid":"GO:1903799"},{"relation_name":"is_a","term_name":"regulation of primary miRNA processing","termid":"GO:2000634"},{"relation_name":"negatively_regulates","term_name":"primary miRNA processing","termid":"GO:0031053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of primary miRNA processing","synonyms":[{"name":"negative regulation of pri-miRNA processing","type":"exact"},{"name":"negative regulation of primary microRNA processing","type":"exact"}],"termid":"GO:2000635"}


id: PBO:0043182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDGSH iron sulfur domain 2","termid":"PBO:0043182"}


id: GO:0070407
data:
  {"annotated_genes":["SJAG_00984"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89329],"is_not":false,"summary":null,"term":"GO:0070407"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the oxidation of one or more amino acid residues in the protein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modification-dependent protein catabolic process","termid":"GO:0019941"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00984":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"oxidation-dependent protein catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"oxidation-dependent protein breakdown","type":"exact"},{"name":"oxidation-dependent protein catabolism","type":"exact"},{"name":"oxidation-dependent protein degradation","type":"exact"},{"name":"oxidation-dependent proteolysis","type":"exact"},{"name":"oxidized protein catabolic process","type":"exact"}],"termid":"GO:0070407","terms_by_termid":{"GO:0070407":null}}


id: SO:0002007
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An MNV is a multiple nucleotide variant (substitution) in which the inserted sequence is the same length as the replaced sequence.","definition_xrefs":["NCBI:th"],"direct_ancestors":[{"relation_name":"is_a","term_name":"substitution","termid":"SO:1000002"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MNV","synonyms":[{"name":"multiple nucleotide substitution","type":"exact"},{"name":"multiple nucleotide variant","type":"exact"}],"termid":"SO:0002007"}


id: PBO:0109451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chibby 1, beta catenin antagonist","termid":"PBO:0109451"}


id: PBO:0080597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 27","termid":"PBO:0080597"}


id: PBO:0065093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase AMP-activated non-catalytic subunit gamma 2","termid":"PBO:0065093"}


id: GO:0006398
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any mRNA 3'-end processing that involves the binding to and cleavage of a stem-loop structure. For example, histone mRNAs contain a highly conserved stem-loop sequence at the 3' end of the mRNA with a 6 base pairs (bp) stem and a 4-nt loop. The mRNA is cleaved between these two elements, after the fourth or fifth nucleotide, which is typically an adenosine.","definition_xrefs":["GOC:tb","PMID:17998288","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone mRNA metabolic process","termid":"GO:0008334"},{"relation_name":"is_a","term_name":"mRNA 3'-end processing","termid":"GO:0031124"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0016071","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"mRNA 3'-end processing by stem-loop binding and cleavage","synonyms":[{"name":"histone mRNA 3' end processing","type":"narrow"}],"termid":"GO:0006398"}


id: PR:Q9UTD6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- yea6 gene.","definition_xrefs":["UniProtKB:Q9UTD6","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized mitochondrial carrier C227.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC227.03c","synonyms":[{"name":"Spom972h-yea6","type":"exact"}],"termid":"PR:Q9UTD6"}


id: GO:1902097
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any positive regulation of transcription from RNA polymerase II promoter that is involved in defense response to Gram-negative bacterium.","definition_xrefs":["PMID:17183709","GOC:kmv","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium (obsolete GO:1902097)","synonyms":[{"name":"activation of global transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"activation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"related"},{"name":"activation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"related"},{"name":"activation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"related"},{"name":"activation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"related"},{"name":"activation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"activation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"narrow"},{"name":"activation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"narrow"},{"name":"activation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"narrow"},{"name":"activation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"narrow"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"related"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"related"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"related"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter involved in defence response to Gram-negative bacteria","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter involved in defence response to Gram-negative bacterium","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter involved in defense response to Gram-negative bacteria","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter involved in defense response to Gram-negative bacterium","type":"related"},{"name":"positive regulation of transcription from Pol II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"positive regulation of transcription from Pol II promoter involved in defence response to Gram-negative bacteria","type":"exact"},{"name":"positive regulation of transcription from Pol II promoter involved in defence response to Gram-negative bacterium","type":"exact"},{"name":"positive regulation of transcription from Pol II promoter involved in defense response to Gram-negative bacteria","type":"exact"},{"name":"positive regulation of transcription from Pol II promoter involved in defense response to Gram-negative bacterium","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"positive regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"exact"},{"name":"stimulation of global transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"stimulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"narrow"},{"name":"stimulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"narrow"},{"name":"stimulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"narrow"},{"name":"stimulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"narrow"},{"name":"stimulation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"stimulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"exact"},{"name":"stimulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"exact"},{"name":"stimulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"exact"},{"name":"stimulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"exact"},{"name":"up regulation of global transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"up regulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"related"},{"name":"up regulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"related"},{"name":"up regulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"related"},{"name":"up regulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"related"},{"name":"up regulation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"up regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"exact"},{"name":"up regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"exact"},{"name":"up regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"exact"},{"name":"up regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"exact"},{"name":"up-regulation of global transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"up-regulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"related"},{"name":"up-regulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"related"},{"name":"up-regulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"related"},{"name":"up-regulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"related"},{"name":"up-regulation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"up-regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"exact"},{"name":"upregulation of global transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"upregulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"related"},{"name":"upregulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"related"},{"name":"upregulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"related"},{"name":"upregulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"related"},{"name":"upregulation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"upregulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"exact"},{"name":"upregulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"exact"},{"name":"upregulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"exact"},{"name":"upregulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"exact"}],"termid":"GO:1902097"}


id: PBO:0076899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 53","termid":"PBO:0076899"}


id: PBO:0064653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTPRF interacting protein alpha 3","termid":"PBO:0064653"}


id: GO:0036322
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of pancreatic polypeptide (PP) from a cell. Pancreatic polypeptide is a 36 amino acid polypeptide secreted by islets of Langerhans cells in the pancreas.","definition_xrefs":["Wikipedia:Pancreatic_polypeptide","GOC:cjm","PMID:12730894"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide hormone secretion","termid":"GO:0030072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"pancreatic polypeptide secretion","synonyms":[{"name":"PP secretion","type":"narrow"}],"termid":"GO:0036322"}


id: GO:0103072
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a (R)-2-hydroxy even numbered straight chain 2,3,4-saturated fatty acyl CoA = formyl-CoA + an odd numbered straight chain 2,3,4-saturated fatty aldehyde.","definition_xrefs":["GOC:pz","EC:4.1.-.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-carbon lyase activity","termid":"GO:0016830"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"straight chain (R)-2-hydroxy fatty acyl-CoA lyase activity","secondary_identifiers":["MetaCyc:RXN66-475"],"termid":"GO:0103072"}


id: SO:0001595
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant which causes a disruption of the translational reading frame, by shifting two bases backward.","direct_ancestors":[{"relation_name":"is_a","term_name":"frameshift_variant","termid":"SO:0001589"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plus_2_frameshift_variant","synonyms":[{"name":"+2 frameshift variant","type":"exact"},{"name":"plus 2 frameshift variant","type":"exact"}],"termid":"SO:0001595"}


id: GO:0034716
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains Gemin3 (DDX20), Gemin4, and Gemin5, and can bind to snRNAs; may be an intermediate in SMN complex assembly.","definition_xrefs":["PMID:17640873","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Gemin3-Gemin4-Gemin5 complex","termid":"GO:0034716"}


id: PBO:0086212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that binds Sin3p in a two-hybrid assay; STB6 has a paralog, STB2, that arose from the whole genome duplication","termid":"PBO:0086212"}


id: FYPO:0006835
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of glucan endo-1,3-beta-glucanase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0000257"],"is_obsolete":false,"name":"normal glucan endo-1,3-beta-glucanase activity","synonyms":[{"name":"normal glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group","type":"exact"}],"termid":"FYPO:0006835"}


id: GO:1901033
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of response to reactive oxygen species.","definition_xrefs":["GOC:kmv","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to reactive oxygen species","termid":"GO:1901031"},{"relation_name":"is_a","term_name":"positive regulation of response to oxidative stress","termid":"GO:1902884"},{"relation_name":"positively_regulates","term_name":"response to reactive oxygen species","termid":"GO:0000302"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to reactive oxygen species","synonyms":[{"name":"activation of response to AOS","type":"exact"},{"name":"activation of response to ROI","type":"exact"},{"name":"activation of response to ROS","type":"exact"},{"name":"activation of response to active oxygen species","type":"exact"},{"name":"activation of response to reactive oxidative species","type":"exact"},{"name":"activation of response to reactive oxygen intermediate","type":"exact"},{"name":"activation of response to reactive oxygen species","type":"narrow"},{"name":"positive regulation of response to AOS","type":"exact"},{"name":"positive regulation of response to ROI","type":"exact"},{"name":"positive regulation of response to ROS","type":"exact"},{"name":"positive regulation of response to active oxygen species","type":"exact"},{"name":"positive regulation of response to reactive oxidative species","type":"exact"},{"name":"positive regulation of response to reactive oxygen intermediate","type":"exact"},{"name":"up regulation of response to AOS","type":"exact"},{"name":"up regulation of response to ROI","type":"exact"},{"name":"up regulation of response to ROS","type":"exact"},{"name":"up regulation of response to active oxygen species","type":"exact"},{"name":"up regulation of response to reactive oxidative species","type":"exact"},{"name":"up regulation of response to reactive oxygen intermediate","type":"exact"},{"name":"up regulation of response to reactive oxygen species","type":"exact"},{"name":"up-regulation of response to AOS","type":"exact"},{"name":"up-regulation of response to ROI","type":"exact"},{"name":"up-regulation of response to ROS","type":"exact"},{"name":"up-regulation of response to active oxygen species","type":"exact"},{"name":"up-regulation of response to reactive oxidative species","type":"exact"},{"name":"up-regulation of response to reactive oxygen intermediate","type":"exact"},{"name":"up-regulation of response to reactive oxygen species","type":"exact"},{"name":"upregulation of response to AOS","type":"exact"},{"name":"upregulation of response to ROI","type":"exact"},{"name":"upregulation of response to ROS","type":"exact"},{"name":"upregulation of response to active oxygen species","type":"exact"},{"name":"upregulation of response to reactive oxidative species","type":"exact"},{"name":"upregulation of response to reactive oxygen intermediate","type":"exact"},{"name":"upregulation of response to reactive oxygen species","type":"exact"}],"termid":"GO:1901033"}


id: PBO:0091614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aminotransferase class-III, possible transaminase, unknown specificity, implicated in amino acid or cofactor metabolism","termid":"PBO:0091614"}


id: PR:O59748
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- lsc1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59748"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTD kinase subunit beta (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC530.13","synonyms":[{"name":"CTD kinase subunit 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"CTDK-I subunit beta (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-lsc1","type":"exact"},{"name":"latrunculin sensitive cyclin knockout protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O59748"}


id: PBO:0074457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingomyelin phosphodiesterase 2","termid":"PBO:0074457"}


id: PBO:0056907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitoguardin 2","termid":"PBO:0056907"}


id: GO:0044052
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An interaction with the host organism mediated by a substance released via symbiont membrane budding, the evagination of a membrane resulting in formation of a vesicle.","definition_xrefs":["MITRE:tk"],"gene_count":0,"genotype_count":0,"name":"obsolete interaction with host via substance released by membrane budding (obsolete GO:0044052)","synonyms":[{"name":"interaction with host via substance released by symbiont membrane budding","type":"exact"}],"termid":"GO:0044052"}


id: GO:0001804
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the rate of type III hypersensitivity, a type of inflammatory response.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of type III hypersensitivity","termid":"GO:0001803"},{"relation_name":"is_a","term_name":"negative regulation of hypersensitivity","termid":"GO:0002884"},{"relation_name":"is_a","term_name":"negative regulation of myeloid leukocyte mediated immunity","termid":"GO:0002887"},{"relation_name":"is_a","term_name":"negative regulation of immunoglobulin mediated immune response","termid":"GO:0002890"},{"relation_name":"negatively_regulates","term_name":"type III hypersensitivity","termid":"GO:0001802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of type III hypersensitivity","synonyms":[{"name":"down regulation of type III hypersensitivity","type":"exact"},{"name":"down-regulation of type III hypersensitivity","type":"exact"},{"name":"downregulation of type III hypersensitivity","type":"exact"},{"name":"inhibition of type III hypersensitivity","type":"narrow"}],"termid":"GO:0001804"}


id: PBO:0086963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Regulatory gamma subunit of fatty acid synthase (FAS); ATPase dedicated chaperone that adapts proteasome assembly to stress; induced upon stress; interacts with Rpt6p to assist its pairing to Rpt3p and early steps in proteasome biogenesis; associates with ribosomes; heterozygous deletion demonstrated increases in chromosome instability in a rad9 deletion background; protein abundance is decreased upon intracellular iron depletion","termid":"PBO:0086963"}


id: GO:0061568
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of introducing a phosphate group into GDP, guanosine diphosphate, to produce GTP.","definition_xrefs":["GOC:dph","PMID:23416111"],"gene_count":0,"genotype_count":0,"name":"obsolete GDP phosphorylation (obsolete GO:0061568)","termid":"GO:0061568"}


id: PBO:0069794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1080, pseudogene","termid":"PBO:0069794"}


id: PBO:0031358
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_benomyl","termid":"PBO:0031358"}


id: GO:0033483
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A homeostatic process involved in the maintenance of an internal steady state of a gas within an organism or cell.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete gas homeostasis (obsolete GO:0033483)","termid":"GO:0033483"}


id: PBO:0072171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15 pseudogene 8","termid":"PBO:0072171"}


id: FYPO:0004039
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which primary amine oxidase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal primary amine oxidase activity","termid":"FYPO:0003072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000652","FYPO:0000654","FYPO:0000661"],"is_obsolete":false,"name":"abolished primary amine oxidase activity","synonyms":[{"name":"primary amine oxidase activity abolished","type":"exact"}],"termid":"FYPO:0004039"}


id: PBO:0071176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 17","termid":"PBO:0071176"}


id: GO:1903252
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving hercynylcysteine sulfoxide.","definition_xrefs":["GO_REF:0000068","GOC:TermGenie","PMID:24828577"],"gene_count":0,"genotype_count":0,"name":"obsolete hercynylcysteine sulfoxide metabolic process (obsolete GO:1903252)","synonyms":[{"name":"hercynylcysteine sulfoxide metabolism","type":"exact"}],"termid":"GO:1903252"}


id: GO:2001025
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of response to drug.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of response to stimulus","termid":"GO:0048584"},{"relation_name":"is_a","term_name":"regulation of response to drug","termid":"GO:2001023"},{"relation_name":"positively_regulates","term_name":"response to xenobiotic stimulus","termid":"GO:0009410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to drug","synonyms":[{"name":"positive regulation of drug resistance","type":"related"},{"name":"positive regulation of drug susceptibility/resistance","type":"related"}],"termid":"GO:2001025"}


id: PBO:0027676
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_single_or_double_cell_division,_small_cell","termid":"PBO:0027676"}


id: GO:0033009
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A small, vestigial nucleus found in some plastids that derive from a eukaryotic endosymbiont. Observed in chlorarachniophytes and cryptomonads, which acquired their plastids from a green and red alga respectively.","definition_xrefs":["PMID:16760254"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"},{"relation_name":"part_of","term_name":"plastid","termid":"GO:0009536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"nucleomorph","secondary_identifiers":["Wikipedia:Nucleomorph"],"termid":"GO:0033009"}


id: MOD:01056
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3',5'-dibromo-L-tyrosine","termid":"MOD:01023"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(79)Br labeled 3',5'-dibromotyrosine","termid":"MOD:01056"}


id: GO:0061322
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a disseminated nephrocyte. A disseminated nephrocyte is an insect renal cell that filters hemolymph and is found at scattered locations in the fat body or other tissues. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.","definition_xrefs":["GOC:mtg_kidney_jan10","GOC:19783135","GOC:dph","CL:0002524"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephrocyte differentiation","termid":"GO:0061319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"disseminated nephrocyte differentiation","termid":"GO:0061322"}


id: GO:0047304
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2-aminoethyl)phosphonate + pyruvate = L-alanine + phosphonoacetaldehyde.","definition_xrefs":["EC:2.6.1.37","RHEA:17021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016769"}],"interesting_parent_ids":["GO:0016740","GO:0016769","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"2-aminoethylphosphonate-pyruvate transaminase activity","secondary_identifiers":["KEGG_REACTION:R04152","MetaCyc:2.6.1.37-RXN"],"synonyms":[{"name":"(2-aminoethyl)phosphonate aminotransferase activity","type":"related"},{"name":"(2-aminoethyl)phosphonate transaminase activity","type":"related"},{"name":"(2-aminoethyl)phosphonate--pyruvate aminotransferase activity","type":"related"},{"name":"(2-aminoethyl)phosphonate:pyruvate aminotransferase activity","type":"related"},{"name":"(2-aminoethyl)phosphonic acid aminotransferase activity","type":"related"},{"name":"2-aminoethylphosphonate aminotransferase activity","type":"related"},{"name":"2-aminoethylphosphonate--pyruvate aminotransferase activity","type":"related"},{"name":"2-aminoethylphosphonate-pyruvate aminotransferase activity","type":"exact"}],"termid":"GO:0047304"}


id: PBO:0077784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA topoisomerase I pseudogene 2","termid":"PBO:0077784"}


id: PBO:0063106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PARK7 pseudogene 2","termid":"PBO:0063106"}


id: PBO:0002567
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"the sequence previously referred to as SPAC27D7.10c was a duplication caused by missassembly of the cosmid","termid":"PBO:0002567"}


id: GO:0051740
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkene binding","termid":"GO:0072328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"ethylene binding","synonyms":[{"name":"ethene binding","type":"exact"}],"termid":"GO:0051740"}


id: PBO:0084525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the conserved GPN-loop GTPase family; has a role in transport of RNA polymerase II to the nucleus; exhibits GTP-dependent binding to PolII; has ATPase activity; involved in sister chromatid cohesion; phosphorylated by the Pcl1p-Pho85p kinase complex; human homolog XAB1 interacts with human RNA polymerase II; protein abundance increases in response to DNA replication stress","termid":"PBO:0084525"}


id: GO:0018002
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acetylation of the N-terminal glutamic acid of proteins to form the derivate acetyl-glutamic acid.","definition_xrefs":["RESID:AA0044"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal protein amino acid acetylation","termid":"GO:0006474"},{"relation_name":"is_a","term_name":"peptidyl-glutamic acid modification","termid":"GO:0018200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0051604","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"N-terminal peptidyl-glutamic acid acetylation","termid":"GO:0018002"}


id: PBO:0047153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 183 member D, pseudogene","termid":"PBO:0047153"}


id: PBO:0059715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO2 pseudogene 23","termid":"PBO:0059715"}


id: PBO:0091937
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Division Mal Foutue","termid":"PBO:0091937"}


id: PBO:0044868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DENND2B antisense RNA 1","termid":"PBO:0044868"}


id: PBO:0066803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 102","termid":"PBO:0066803"}


id: GO:0009294
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The direct uptake and incorporation of exogenous genetic material (DNA or RNA) into a cell from its surroundings through the cell envelope.","definition_xrefs":["PMID:12706993","PMID:24509783","PMID:27826682"],"direct_ancestors":[{"relation_name":"is_a","term_name":"horizontal gene transfer","termid":"GO:0009292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"DNA-mediated transformation","synonyms":[{"name":"DNA mediated transformation","type":"exact"}],"termid":"GO:0009294"}


id: PBO:0063062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pantothenate kinase 2","termid":"PBO:0063062"}


id: PBO:0069784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1069, pseudogene","termid":"PBO:0069784"}


id: GO:0002604
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of dendritic cell antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation","termid":"GO:0002577"},{"relation_name":"regulates","term_name":"dendritic cell antigen processing and presentation","termid":"GO:0002468"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of dendritic cell antigen processing and presentation","termid":"GO:0002604"}


id: PBO:0034146
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_neoteny_relationship_with","termid":"PBO:0034146"}


id: PBO:0012834
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complented by H. sapiens HRAS","termid":"PBO:0012834"}


id: PBO:0015256
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by hamster Dpagt1","termid":"PBO:0015256"}


id: PBO:0078126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 9-1","termid":"PBO:0078126"}


id: PR:Q9UUB7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- swi5 gene.","definition_xrefs":["UniProtKB:Q9UUB7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mating-type switching protein swi5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC409.03","synonyms":[{"name":"DNA repair protein swi5 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-swi5","type":"exact"}],"termid":"PR:Q9UUB7"}


id: GO:0047685
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + an amine = adenosine 3',5'-bisphosphate + a sulfamate.","definition_xrefs":["EC:2.8.2.3","MetaCyc:ARYLAMINE-SULFOTRANSFERASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfotransferase activity","termid":"GO:0008146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016782"}],"interesting_parent_ids":["GO:0003674","GO:0016782","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"amine sulfotransferase activity","secondary_identifiers":["RHEA:24136"],"synonyms":[{"name":"3'-phosphoadenylyl-sulfate:amine N-sulfotransferase activity","type":"related"},{"name":"amine N-sulfotransferase activity","type":"related"},{"name":"amine sulphotransferase activity","type":"exact"},{"name":"arylamine sulfotransferase activity","type":"exact"}],"termid":"GO:0047685"}


id: PBO:0053874
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1150","termid":"PBO:0053874"}


id: PBO:0079462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TVP23B pseudogene 2","termid":"PBO:0079462"}


id: PBO:0040308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase F1 subunit alpha","termid":"PBO:0040308"}


id: GO:0070551
data:
  {"annotated_genes":["SJAG_02621"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[114100],"is_not":false,"summary":null,"term":"GO:0070551"}]},"cv_name":"molecular_function","definition":"Catalysis of the endonucleolytic cleavage of the mRNA in a double-stranded RNA molecule formed by the base pairing of an mRNA with an siRNA, yielding 5'-phosphomonoesters.","definition_xrefs":["GOC:mah","PMID:15105377"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA endonuclease activity, producing 5'-phosphomonoesters","termid":"GO:0016891"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02621":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016788","GO:0140098"],"is_obsolete":false,"name":"endoribonuclease activity, cleaving siRNA-paired mRNA","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9820842"],"synonyms":[{"name":"argonaute endoribonuclease activity","type":"related"}],"termid":"GO:0070551","terms_by_termid":{"GO:0070551":null}}


id: GO:0003195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of the tricuspid valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atrioventricular valve formation","termid":"GO:0003190"},{"relation_name":"part_of","term_name":"tricuspid valve morphogenesis","termid":"GO:0003186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tricuspid valve formation","termid":"GO:0003195"}


id: PBO:0049512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A clustered histone 19","termid":"PBO:0049512"}


id: GO:0015245
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of fatty acids from one side of a membrane to the other. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transmembrane transporter activity","termid":"GO:0008028"},{"relation_name":"is_a","term_name":"lipid transmembrane transporter activity","termid":"GO:0170055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"fatty acid transmembrane transporter activity","secondary_identifiers":["GO:0015246","Reactome:R-HSA-5627891","Reactome:R-HSA-879585"],"synonyms":[{"name":"fatty acid transporter activity","type":"related"},{"name":"fatty acyl transporter activity","type":"exact"},{"name":"fatty-acyl group transporter activity","type":"broad"},{"name":"peroxisomal fatty acyl transporter","type":"narrow"}],"termid":"GO:0015245"}


id: PBO:0039771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aquaporin 5","termid":"PBO:0039771"}


id: GO:1990236
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of the proteasome core complex (AKA core particle (CP)) from the cytoplasm into the nucleus.","definition_xrefs":["GOC:rb","GOC:dos","PMID:23982732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex localization","termid":"GO:0031503"},{"relation_name":"is_a","term_name":"import into nucleus","termid":"GO:0051170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0006913"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150","GO:0006913"],"is_obsolete":false,"name":"proteasome core complex import into nucleus","termid":"GO:1990236"}


id: GO:1903238
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of leukocyte tethering or rolling.","definition_xrefs":["GO_REF:0000058","GOC:als","PMID:18308860","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte tethering or rolling","termid":"GO:1903236"},{"relation_name":"is_a","term_name":"positive regulation of leukocyte adhesion to vascular endothelial cell","termid":"GO:1904996"},{"relation_name":"positively_regulates","term_name":"leukocyte tethering or rolling","termid":"GO:0050901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"positively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"positive regulation of leukocyte tethering or rolling","synonyms":[{"name":"activation of leukocyte tethering or rolling","type":"narrow"},{"name":"up regulation of leukocyte tethering or rolling","type":"exact"},{"name":"up-regulation of leukocyte tethering or rolling","type":"exact"},{"name":"upregulation of leukocyte tethering or rolling","type":"exact"}],"termid":"GO:1903238"}


id: PBO:0058261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4639","termid":"PBO:0058261"}


id: FYPO:0007828
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin contractile ring maturation is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:34133210","PomBase:mah","GO:1902406"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal actomyosin contractile ring organization","termid":"FYPO:0007827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal actomyosin contractile ring maturation","synonyms":[{"name":"normal actomyosin contractile ring maintenance","type":"exact"},{"name":"normal actomyosin contractile ring maturation during mitotic cell cycle","type":"related"},{"name":"normal actomyosin contractile ring maturation during vegetative growth","type":"exact"},{"name":"normal contractile ring maturation","type":"exact"},{"name":"normal mitotic actomyosin contractile ring maintenance","type":"exact"}],"termid":"FYPO:0007828"}


id: PATO:0001090
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001090 absolute elasticity value (obsolete PATO:0001090)","termid":"PATO:0001090"}


id: MOD:00592
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["PubMed:12705581","PubMed:15732931","PubMed:16046801","Unimod:272"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfonation of N-terminal","synonyms":[{"name":"CAF","type":"related"},{"name":"sulfonation of N-terminus","type":"related"}],"termid":"MOD:00592"}


id: GO:0098728
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The self-renewing division of a germline stem cell, to produce a daughter stem cell and a daughter germ cell which will divide to form one or more gametes.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"germ-line stem cell division","termid":"GO:0042078"},{"relation_name":"is_a","term_name":"asymmetric stem cell division","termid":"GO:0098722"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"germline stem cell asymmetric division","termid":"GO:0098728"}


id: PR:P87235
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rhp42 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair protein rhp42 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4G3.10c","synonyms":[{"name":"Spom972h-rhp42","type":"exact"}],"termid":"PR:P87235"}


id: GO:0061235
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism retains a population of mesenchymal stem cells that contributes to the shaping of a nephron in the mesonephros. A mesenchymal stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchymal stem cell maintenance involved in nephron morphogenesis","termid":"GO:0072038"},{"relation_name":"part_of","term_name":"mesonephric nephron morphogenesis","termid":"GO:0061228"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal stem cell maintenance involved in mesonephric nephron morphogenesis","termid":"GO:0061235"}


id: PATO:0002166
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A duration quality of a process inhering in a bearer by virtue of the bearer's premature completion of the closure of the opening of an anatomical entity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"premature","termid":"PATO:0000694"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"premature closure","termid":"PATO:0002166"}


id: GO:0033499
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of galactose, via the intermediate UDP-galactose.","definition_xrefs":["GOC:mah","MetaCyc:PWY-3821"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactose catabolic process","termid":"GO:0019388"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"galactose catabolic process via UDP-galactose","secondary_identifiers":["MetaCyc:PWY-6317"],"synonyms":[{"name":"Leloir Pathway","type":"related"},{"name":"galactose breakdown via UDP-galactose","type":"exact"},{"name":"galactose catabolism via UDP-galactose","type":"exact"},{"name":"galactose degradation via UDP-galactose","type":"exact"}],"termid":"GO:0033499"}


id: PBO:0068518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 112, pseudogene","termid":"PBO:0068518"}


id: GO:0043876
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-threonine (or D-allo-threonine) = glycine + acetaldehyde.","definition_xrefs":["PMID:9642221","MetaCyc:4.1.2.42-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"D-threonine aldolase activity","secondary_identifiers":["EC:4.1.2.42","RHEA:15257"],"synonyms":[{"name":"D-TA","type":"exact"},{"name":"D-allo-TA","type":"exact"},{"name":"D-allo-threonine aldolase activity","type":"exact"},{"name":"DtaAS","type":"related"},{"name":"low-specificity D-threonine aldolase","type":"narrow"}],"termid":"GO:0043876"}


id: PBO:0042652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDYL pseudogene 1","termid":"PBO:0042652"}


id: FYPO:0001940
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of ubiquinol-cytochrome-c reductase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased oxidoreductase activity","termid":"FYPO:0000690"},{"relation_name":"is_a","term_name":"abnormal ubiquinol-cytochrome-c reductase activity","termid":"FYPO:0001939"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0002114"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000138","FYPO:0001985","FYPO:0000661","FYPO:0002114","FYPO:0000652","FYPO:0000002","FYPO:0005447","FYPO:0000707"],"is_obsolete":false,"name":"decreased ubiquinol-cytochrome-c reductase activity","synonyms":[{"name":"reduced ubiquinol-cytochrome-c reductase activity","type":"exact"}],"termid":"FYPO:0001940"}


id: PBO:0083016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dehydrogenase involved in ubiquinone and sphingolipid metabolism; converts 4-hydroxybenzaldehyde into 4-hydroxybenzoate for ubiquinone anabolism, hexadecenal to hexadecenoic acid in sphingosine 1-phosphate catabolism; human homolog ALDH3A2, mutated in Sjogren-Larsson syndrome, can rescue yeast hfd1 mutant; human ALDH3A1, but not ALDH3A2, rescues pABA- respiratory growth phenotype of hfd1 null; data suggest that dual functions of Hfd1p have diverged in human ALDH3A1, ALDH3A2","termid":"PBO:0083016"}


id: GO:0072024
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the macula densa over time, from its formation to the mature structure. The macula densa is an area of specialized cells in the distal tubule that makes contact with the vascular pole of the glomerulus.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron epithelium development","termid":"GO:0072009"},{"relation_name":"part_of","term_name":"juxtaglomerular apparatus development","termid":"GO:0072051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"macula densa development","termid":"GO:0072024"}


id: PBO:0091677
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in probabilistic modeling, the probability of entering mitosis increases as Cdc13 protein levels increase","termid":"PBO:0091677"}


id: PBO:0048478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucosaminyl (N-acetyl) transferase 1 pseudogene 5","termid":"PBO:0048478"}


id: PBO:0075216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sentan, cilia apical structure protein","termid":"PBO:0075216"}


id: GO:0045443
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of juvenile hormones, the three sesquiterpenoid derivatives that function to maintain the larval state of insects at molting and that may be required for other processes, e.g. oogenesis.","definition_xrefs":["ISBN:0198547684","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpenoid transport","termid":"GO:0046865"},{"relation_name":"is_a","term_name":"endocrine hormone secretion","termid":"GO:0060986"},{"relation_name":"is_a","term_name":"lipid export from cell","termid":"GO:0140353"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0023052","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"juvenile hormone secretion","termid":"GO:0045443"}


id: PBO:0048788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit alpha i1","termid":"PBO:0048788"}


id: PBO:0110509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 66 member 1 like, pseudogene","termid":"PBO:0110509"}


id: PBO:0058701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6829","termid":"PBO:0058701"}


id: PBO:0056254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitosis associated long intergenic non-coding RNA 1","termid":"PBO:0056254"}


id: GO:0030760
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine(1+) + pyridine = N-methylpyridinium + S-adenosyl-L-homocysteine.","definition_xrefs":["EC:2.1.1.87","RHEA:16893"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016741","GO:0003824"],"is_obsolete":false,"name":"pyridine N-methyltransferase activity","secondary_identifiers":["Reactome:R-HSA-175987","KEGG_REACTION:R02862","MetaCyc:PYRIDINE-N-METHYLTRANSFERASE-RXN"],"synonyms":[{"name":"S-adenosyl-L-methionine:pyridine N-methyltransferase activity","type":"related"},{"name":"pyridine methyltransferase activity","type":"related"}],"termid":"GO:0030760"}


id: PBO:0028852
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_RNA_level_during_cellular_response_to_UV","termid":"PBO:0028852"}


id: PBO:0061582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"netrin 1","termid":"PBO:0061582"}


id: FYPO:0006128
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the duration of the second meiotic nuclear division is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal meiosis II","termid":"FYPO:0003798"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal duration of meiosis II","synonyms":[{"name":"normal duration of second meiotic nuclear division","type":"exact"}],"termid":"FYPO:0006128"}


id: PBO:0001283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-ranBP","termid":"PBO:0001283"}


id: PBO:0036289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy associated ubiquitin-like protein modifier Atg12","termid":"PBO:0036289"}


id: GO:0090015
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of leaflet formation as a result of the series of molecular signals generated in response to detection of auxin.","definition_xrefs":["GOC:dph","GOC:tb","GOC:sdb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxin-activated signaling pathway","termid":"GO:0009734"},{"relation_name":"is_a","term_name":"regulation of leaflet formation","termid":"GO:0090016"},{"relation_name":"is_a","term_name":"positive regulation of leaf development","termid":"GO:1905623"},{"relation_name":"positively_regulates","term_name":"leaflet formation","termid":"GO:0090014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of leaflet formation by auxin mediated signaling pathway","synonyms":[{"name":"positive regulation of leaflet formation by auxin mediated signalling pathway","type":"exact"}],"termid":"GO:0090015"}


id: PBO:0013790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fumerate reductase Osm1 (predicted)","termid":"PBO:0013790"}


id: GO:0086067
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that mediates interactions between an AV node cell and its surroundings that contributes to the process of the AV node cell communicating with a bundle of His cell in cardiac conduction. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell communication involved in cardiac conduction","termid":"GO:0086065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"AV node cell to bundle of His cell communication","synonyms":[{"name":"atrioventricular node cell to bundle of His cell communication","type":"exact"}],"termid":"GO:0086067"}


id: GO:0061007
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An system process carried out by any of the organs or tissues of the hepaticobiliary system. The hepaticobiliary system is responsible for metabolic and catabolic processing of small molecules absorbed from the blood or gut, hormones and serum proteins, detoxification, storage of glycogen, triglycerides, metals and lipid soluble vitamins and excretion of bile. Included are the synthesis of albumin, blood coagulation factors, complement, and specific binding proteins.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"system process","termid":"GO:0003008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hepaticobiliary system process","synonyms":[{"name":"hepatobiliary system process","type":"exact"}],"termid":"GO:0061007"}


id: GO:0071726
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diacylated bacterial lipopeptide stimulus.","definition_xrefs":["PMID:12077222","GOC:add","PMID:12524386","PMID:2757794"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to bacterial lipopeptide","termid":"GO:0071221"},{"relation_name":"is_a","term_name":"response to diacyl bacterial lipopeptide","termid":"GO:0071724"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to diacyl bacterial lipopeptide","synonyms":[{"name":"cellular response to diacylated bacterial lipoprotein","type":"exact"}],"termid":"GO:0071726"}


id: PBO:0052716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 8","termid":"PBO:0052716"}


id: PBO:0074878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 58C","termid":"PBO:0074878"}


id: GO:0032914
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of production of transforming growth factor-beta1.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transforming growth factor beta1 production","termid":"GO:0032908"},{"relation_name":"is_a","term_name":"positive regulation of transforming growth factor beta production","termid":"GO:0071636"},{"relation_name":"positively_regulates","term_name":"transforming growth factor beta1 production","termid":"GO:0032905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of transforming growth factor beta1 production","synonyms":[{"name":"activation of transforming growth factor-beta1 production","type":"narrow"},{"name":"positive regulation of TGF-B1 production","type":"exact"},{"name":"positive regulation of TGFB1 production","type":"exact"},{"name":"stimulation of transforming growth factor-beta1 production","type":"narrow"},{"name":"up regulation of transforming growth factor-beta1 production","type":"exact"},{"name":"up-regulation of transforming growth factor-beta1 production","type":"exact"},{"name":"upregulation of transforming growth factor-beta1 production","type":"exact"}],"termid":"GO:0032914"}


id: PBO:0055930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 37B","termid":"PBO:0055930"}


id: PR:O75004
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cdc24 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O75004"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division control protein 24 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC8F11.07c","synonyms":[{"name":"Spom972h-cdc24","type":"exact"}],"termid":"PR:O75004"}


id: PBO:0088253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein phosphatase PP2A regulatory subunit, PTPA family Ypa2","termid":"PBO:0088253"}


id: GO:0019844
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. The function of any microbial toxin that cannot be easily separated from the structure of the cell.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete endotoxin activity (obsolete GO:0019844)","synonyms":[{"name":"endotoxin activity","type":"exact"}],"termid":"GO:0019844"}


id: SO:0001133
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles of the second and third residues, which are the basis for sub-categorization.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_turn_motif","termid":"SO:0001128"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"beta_turn","secondary_identifiers":["BS:00212"],"synonyms":[{"name":"beta turn","type":"exact"}],"termid":"SO:0001133"}


id: GO:0018517
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cis-4,5-dihydroxycyclohexa-2,6-diene-1,2-dicarboxylate + NAD+ = 4,5-dihydroxyphthalate + H+ + NADH.","definition_xrefs":["EC:1.3.1.64","RHEA:13837"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"phthalate 4,5-cis-dihydrodiol dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R05275","UM-BBD_reactionID:r0142","MetaCyc:1.3.1.64-RXN"],"synonyms":[{"name":"cis-4,5-dihydroxycyclohexa-1(6),2-diene-1,2-dicarboxylate:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0018517"}


id: PBO:0089301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH/NADPH-dependent indole-3-acetaldehyde reductase, implicated in cellular detoxification","termid":"PBO:0089301"}


id: PBO:0053593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 620","termid":"PBO:0053593"}


id: PBO:0002525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-B homolog Cbh1","termid":"PBO:0002525"}


id: MOD:01587
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to O-(2-aminoethylphosphoryl)-L-serine.","definition_xrefs":["PubMed:16825186","PubMed:16949362","PubMed:15249686","RESID:AA0497"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorus containing modified residue","termid":"MOD:00861"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-(2-aminoethylphosphoryl)-L-serine","synonyms":[{"name":"(2S)-2-amino-3-([(2-aminoethoxy)(hydroxy)phosphoryl]oxy)propanoic acid","type":"exact"},{"name":"MOD_RES O-(2-aminoethylphosphoryl)serine","type":"exact"},{"name":"O-(2-aminoethylphosphoryl)-L-serine","type":"exact"},{"name":"O3-(2-aminoethylphosphoryl)-L-serine","type":"exact"},{"name":"O3-(phosphoethanolamine)-L-serine","type":"exact"},{"name":"serine ethanolamine phosphate","type":"exact"},{"name":"serine ethanolamine phosphodiester","type":"exact"}],"termid":"MOD:01587"}


id: PATO:0001917
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and abdomen of an organism relative to another entity.","definition_xrefs":["PATOC:wd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anterior to","termid":"PATO:0001632"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anteroventral to","termid":"PATO:0001917"}


id: PBO:0091783
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Facilitated Nutritional eXit","termid":"PBO:0091783"}


id: PBO:0073593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SHOC2 leucine rich repeat scaffold protein","termid":"PBO:0073593"}


id: GO:0007549
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Compensating for the variation in the unpaired sex chromosome:autosome chromosome ratios between sexes by activation or inactivation of genes on one or both of the sex chromosomes.","definition_xrefs":["GOC:ems","PMID:35306885","PMID:11498577","PMID:30049999"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epigenetic regulation of gene expression","termid":"GO:0040029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0006325","GO:0010467"],"is_obsolete":false,"name":"sex-chromosome dosage compensation","secondary_identifiers":["Wikipedia:Sex-chromosome_dosage_compensation"],"synonyms":[{"name":"dosage compensation","type":"broad"},{"name":"sex chromosome dosage compensation","type":"exact"}],"termid":"GO:0007549"}


id: PBO:0090435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEDD8 activating enzyme E1-type Uba5","termid":"PBO:0090435"}


id: GO:0120122
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving prolactin, a protein hormone of the anterior pituitary gland that promotes lactation in response to the suckling stimulus of hungry young mammals.","definition_xrefs":["PMID:11015620"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hormone metabolic process","termid":"GO:0042445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"prolactin metabolic process","synonyms":[{"name":"prolactin metabolism","type":"exact"}],"termid":"GO:0120122"}


id: PBO:0063686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pepsinogen B, pseudogene","termid":"PBO:0063686"}


id: PBO:0058328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4701","termid":"PBO:0058328"}


id: PBO:0083283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; partially overlaps the verified gene AVT3","termid":"PBO:0083283"}


id: PBO:0091853
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"equivalent function in S. cerevisiae is performed by STE12, but this is STE-like, not HMG","termid":"PBO:0091853"}


id: PR:O59858
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glutathione peroxidase 8 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03422","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione peroxidase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC32F12.03c","secondary_identifiers":["UniProtKB:O59858"],"synonyms":[{"name":"Spom972h-GPX8","type":"exact"}],"termid":"PR:O59858"}


id: PBO:0086292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a role in ER delivery of tail-anchored membrane proteins; interacts with Sgt2p; binds to the TRC complex, which inserts proteins into the ER membrane; interacts with Msn5p karyopherin; YBR137W is not an essential gene","termid":"PBO:0086292"}


id: PBO:0065803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB1B, member RAS oncogene family","termid":"PBO:0065803"}


id: PBO:0036322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extracellular 5'-nucleotidase, human NT5E family (predicted)","termid":"PBO:0036322"}


id: GO:0021725
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the superior raphe nucleus over time, from its formation to the mature structure.","definition_xrefs":["GOC:dgh","ZFA:0000440","GOC:dph","GOC:jid","GOC:curators","GO_REF:0000021","GOC:cvs","PMID:19003874","GOC:cjm","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neural nucleus development","termid":"GO:0048857"},{"relation_name":"part_of","term_name":"medullary reticular formation development","termid":"GO:0021723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"superior raphe nucleus development","synonyms":[{"name":"anterior raphe nucleus development","type":"broad"},{"name":"superior central nucleus development","type":"broad"}],"termid":"GO:0021725"}


id: PBO:0080881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YPEL5 pseudogene 1","termid":"PBO:0080881"}


id: PBO:0078650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon CTT) 3-1","termid":"PBO:0078650"}


id: PBO:0026945
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_RNA_level_oscillation_during_mitotic_cell_cycle","termid":"PBO:0026945"}


id: GO:0008098
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an unprocessed 5S ribosomal RNA transcript.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5S rRNA binding","termid":"GO:0008097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0003723","GO:0005488"],"is_obsolete":false,"name":"5S rRNA primary transcript binding","termid":"GO:0008098"}


id: PBO:0089328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAN complex protein phosphotransferase subunit Pan3","termid":"PBO:0089328"}


id: GO:0007358
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Specification of the borders of central gap gene expression mediated largely by the effects of other gap genes; in insects this is exemplified by knirps repression of Kruppel.","definition_xrefs":["ISBN:0879694238"],"gene_count":0,"genotype_count":0,"name":"obsolete establishment of central gap gene boundaries (obsolete GO:0007358)","termid":"GO:0007358"}


id: PBO:0011481
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defect of the gene silencing at centromeric heterochromatin","termid":"PBO:0011481"}


id: GO:2000464
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of astrocyte chemotaxis.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of chemotaxis","termid":"GO:0050921"},{"relation_name":"is_a","term_name":"positive regulation of glial cell migration","termid":"GO:1903977"},{"relation_name":"is_a","term_name":"regulation of astrocyte chemotaxis","termid":"GO:2000458"},{"relation_name":"positively_regulates","term_name":"astrocyte chemotaxis","termid":"GO:0035700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of astrocyte chemotaxis","termid":"GO:2000464"}


id: FYPO:0001321
data:
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id: GO:0071700
data:
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id: PBO:0002921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein Hsp9","termid":"PBO:0002921"}


id: PBO:0072988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium channel and clathrin linker 1","termid":"PBO:0072988"}


id: GO:0009826
data:
  {"annotated_genes":["SJAG_02169","SJAG_00244","SJAG_03581","SJAG_02392","SJAG_01017","SJAG_04509","SJAG_00514"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91920,90649,85963],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0051519"},{"annotations":[90090,84010],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042815"},{"annotations":[86818],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0051517"},{"annotations":[111087],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0051516"}]},"cv_name":"biological_process","definition":"The process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell.","definition_xrefs":["ISBN:0943088399"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell morphogenesis","termid":"GO:0000902"},{"relation_name":"is_a","term_name":"cell growth","termid":"GO:0016049"},{"relation_name":"is_a","term_name":"developmental growth involved in morphogenesis","termid":"GO:0060560"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00244":null,"SJAG_00514":null,"SJAG_01017":null,"SJAG_02169":null,"SJAG_02392":null,"SJAG_03581":null,"SJAG_04509":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"unidimensional cell growth","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cell elongation","type":"narrow"},{"name":"cell growth along one axis","type":"exact"},{"name":"cell growth in one dimension","type":"exact"},{"name":"cell morphogenesis by unidimensional growth","type":"exact"},{"name":"polar cell growth","type":"exact"},{"name":"polarized cell growth","type":"exact"}],"termid":"GO:0009826","terms_by_termid":{"GO:0042815":null,"GO:0051516":null,"GO:0051517":null,"GO:0051519":null}}


id: PBO:0064987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich protein BstNI subfamily 4","termid":"PBO:0064987"}


id: GO:0002858
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of natural killer cell mediated cytotoxicity directed against tumor cell target.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of natural killer cell mediated immune response to tumor cell","termid":"GO:0002855"},{"relation_name":"is_a","term_name":"regulation of natural killer cell mediated cytotoxicity","termid":"GO:0042269"},{"relation_name":"regulates","term_name":"natural killer cell mediated cytotoxicity directed against tumor cell target","termid":"GO:0002420"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of natural killer cell mediated cytotoxicity directed against tumor cell target","termid":"GO:0002858"}


id: PBO:0060328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin IF","termid":"PBO:0060328"}


id: PBO:0086101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for accurate chromosome segregation during meiosis; involved in meiotic telomere clustering (bouquet formation) and telomere-led rapid prophase movements; functions with meiosis-specific telomere-binding protein Ndj1p; CSM4 has a paralog, MPS2, that arose from the whole genome duplication","termid":"PBO:0086101"}


id: GO:0050892
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which nutrients are taken up from the contents of the intestine.","definition_xrefs":["GOC:ai","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"digestive system process","termid":"GO:0022600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intestinal absorption","termid":"GO:0050892"}


id: PBO:0058016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3942","termid":"PBO:0058016"}


id: PBO:0059360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S17 pseudogene 6","termid":"PBO:0059360"}


id: PBO:0055946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 55","termid":"PBO:0055946"}


id: PBO:0043186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"citron rho-interacting serine/threonine kinase","termid":"PBO:0043186"}


id: _global:processed_into
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"X is processed_into Y if a region X is modified to create Y.","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"processed_into","termid":"_global:processed_into"}


id: GO:0010705
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which the 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang occurs resulting in double strand break formation and repair through a double Holliday junction intermediate.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic DNA double-strand break processing","termid":"GO:0000706"},{"relation_name":"part_of","term_name":"reciprocal meiotic recombination","termid":"GO:0007131"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006281"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006310"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0006259","GO:0140013","GO:0008150","GO:0006281","GO:0006310","GO:0007049"],"is_obsolete":false,"name":"meiotic DNA double-strand break processing involved in reciprocal meiotic recombination","termid":"GO:0010705"}


id: PBO:0046546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group FRD member 3","termid":"PBO:0046546"}


id: PBO:0000180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIM22 inner membrane protein import complex subunit Tim8 (predicted)","termid":"PBO:0000180"}


id: PBO:0080357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 2 receptor 12 pseudogene","termid":"PBO:0080357"}


id: PBO:0047013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A16","termid":"PBO:0047013"}


id: GO:0010491
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-L-arabinose 1-phosphate + UTP = UDP-L-arabinose + diphosphate.","definition_xrefs":["PMID:17341835"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UTP-monosaccharide-1-phosphate uridylyltransferase activity","termid":"GO:0051748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016779"],"is_obsolete":false,"name":"UTP:arabinose-1-phosphate uridylyltransferase activity","termid":"GO:0010491"}


id: GO:1900586
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of arugosin.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolite catabolic process","termid":"GO:0090487"},{"relation_name":"is_a","term_name":"arugosin metabolic process","termid":"GO:1900585"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"arugosin catabolic process","synonyms":[{"name":"arugosin breakdown","type":"exact"},{"name":"arugosin catabolism","type":"exact"},{"name":"arugosin degradation","type":"exact"}],"termid":"GO:1900586"}


id: PBO:0052930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 20-2","termid":"PBO:0052930"}


id: PBO:0089596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA (cytosine-C5-)-methyltransferase activity Nop2","termid":"PBO:0089596"}


id: PBO:0081770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 702, pseudogene","termid":"PBO:0081770"}


id: GO:0051311
data:
  {"annotated_genes":["SJAG_04508","SJAG_01224","SJAG_00678","SJAG_03217","SJAG_03220","SJAG_01211","SJAG_02346","SJAG_05220","SJAG_03683","SJAG_01775","SJAG_03698","SJAG_07002","SJAG_05319","SJAG_05295","SJAG_02814","SJAG_03437","SJAG_01371","SJAG_05019","SJAG_04259","SJAG_01805","SJAG_00418","SJAG_05266","SJAG_03327","SJAG_03926","SJAG_03989","SJAG_00794","SJAG_01278","SJAG_00918","SJAG_02731","SJAG_04076","SJAG_01837"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112707],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051316"},{"annotations":[89901,83989],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051456"},{"annotations":[113089,83935,111570,97381,94686,103866,109830,86383,89865],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031619"},{"annotations":[112722],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1904967"},{"annotations":[91384,101513,106360,112951,106401,91638,96571,85249,111966,87069,104931,105192,105939,98495,109275,110140,97385,94694,93977,85848,103549,103870,89882],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051455"}]},"cv_name":"biological_process","definition":"A chromosome localization process whereby chromosomes are positioned in a specific order and orientation at the metaphase plate (spindle equator), during meiotic chromosome segregation. This alignment ensures that each daughter cell will receive the correct number of chromosomes during cell division.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metaphase chromosome alignment","termid":"GO:0051310"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"meiotic chromosome segregation","termid":"GO:0045132"}],"gene_count":31,"genes_by_uniquename":{"SJAG_00418":null,"SJAG_00678":null,"SJAG_00794":null,"SJAG_00918":null,"SJAG_01211":null,"SJAG_01224":null,"SJAG_01278":null,"SJAG_01371":null,"SJAG_01775":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_02346":null,"SJAG_02731":null,"SJAG_02814":null,"SJAG_03217":null,"SJAG_03220":null,"SJAG_03327":null,"SJAG_03437":null,"SJAG_03683":null,"SJAG_03698":null,"SJAG_03926":null,"SJAG_03989":null,"SJAG_04076":null,"SJAG_04259":null,"SJAG_04508":null,"SJAG_05019":null,"SJAG_05220":null,"SJAG_05266":null,"SJAG_05295":null,"SJAG_05319":null,"SJAG_07002":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0007049","GO:0140013"],"is_obsolete":false,"name":"meiotic metaphase chromosome alignment","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"metaphase plate congression during meiosis","type":"exact"}],"termid":"GO:0051311","terms_by_termid":{"GO:0031619":null,"GO:0051316":null,"GO:0051455":null,"GO:0051456":null,"GO:1904967":null}}


id: PBO:0079438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin gamma complex associated protein 6","termid":"PBO:0079438"}


id: SO:0002126
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variable gene that rearranges at the DNA level and codes the variable region of the variable domain of an Immunoglobulin chain.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html","IGMT:http://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin_gene","termid":"SO:0002122"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IG_V_gene","synonyms":[{"name":"IGV_gene","type":"exact"},{"name":"IG_variable_gene","type":"exact"},{"name":"Immunoglobulin_variable_gene","type":"exact"}],"termid":"SO:0002126"}


id: GO:0080169
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of boron obtained from boron-containing substances.","definition_xrefs":["PMID:20059736"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to starvation","termid":"GO:0009267"},{"relation_name":"is_a","term_name":"cellular response to chemical stress","termid":"GO:0062197"},{"relation_name":"is_a","term_name":"cellular response to boron-containing substance levels","termid":"GO:0080029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to boron-containing substance deprivation","synonyms":[{"name":"cellular response to boron deprivation","type":"exact"},{"name":"cellular response to boron starvation","type":"exact"}],"termid":"GO:0080169"}


id: PR:Q9P7W5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine/threonine-protein kinase RIO2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR10593:SF1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase rio2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1703.05","secondary_identifiers":["UniProtKB:Q9P7W5"],"synonyms":[{"name":"SPBC1703.05","type":"related"},{"name":"Spom972h-RIOK2","type":"exact"}],"termid":"PR:Q9P7W5"}


id: GO:0031311
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the contractile vacuolar membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of contractile vacuolar membrane (obsolete GO:0031311)","synonyms":[{"name":"intrinsic to contractile vacuolar membrane","type":"narrow"}],"termid":"GO:0031311"}


id: FYPO:0001799
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the mitotic cell cycle is arrested at the mitotic G2/M phase transition during a cellular response to DNA damage.","definition_xrefs":["PMID:19366728","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell cycle arrest at mitotic G2/M phase transition","termid":"FYPO:0000400"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"cell cycle arrest at mitotic G2/M phase transition during response to DNA damage","synonyms":[{"name":"cell cycle arrest at mitotic G2/M phase transition during DNA damage","type":"exact"},{"name":"cell cycle arrest in mitotic G2 phase during response to DNA damage","type":"related"},{"name":"mitotic G2 phase arrest during response to DNA damage","type":"exact"},{"name":"mitotic cell cycle arrest at mitotic G2/M phase transition during response to DNA damage","type":"exact"}],"termid":"FYPO:0001799"}


id: GO:0016120
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of carotenes, hydrocarbon carotenoids.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carotene metabolic process","termid":"GO:0016119"},{"relation_name":"is_a","term_name":"terpene biosynthetic process","termid":"GO:0046246"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"carotene biosynthetic process","synonyms":[{"name":"carotene anabolism","type":"exact"},{"name":"carotene biosynthesis","type":"exact"},{"name":"carotene formation","type":"exact"},{"name":"carotene synthesis","type":"exact"}],"termid":"GO:0016120"}


id: PBO:0078383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation regulatory long non-coding RNA 1","termid":"PBO:0078383"}


id: GO:0033549
data:
  {"annotated_genes":["SJAG_02433","SJAG_02013","SJAG_03185","SJAG_02000","SJAG_03263","SJAG_03893"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[93697],"is_not":false,"summary":null,"term":"GO:0033549"},{"annotations":[113108,92050],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990439"},{"annotations":[87733,91109,99864],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033550"},{"annotations":[99865],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0017017"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a phosphorylated MAP kinase + H2O = a MAP kinase + phosphate.","definition_xrefs":["GOC:mah","PMID:12184814","PMID:17208316"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoprotein phosphatase activity","termid":"GO:0004721"}],"gene_count":6,"genes_by_uniquename":{"SJAG_02000":null,"SJAG_02013":null,"SJAG_02433":null,"SJAG_03185":null,"SJAG_03263":null,"SJAG_03893":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0004721"}],"interesting_parent_ids":["GO:0004721","GO:0140096","GO:0016788","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"MAP kinase phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"MAPK phosphatase activity","type":"exact"}],"termid":"GO:0033549","terms_by_termid":{"GO:0017017":null,"GO:0033549":null,"GO:0033550":null,"GO:1990439":null}}


id: GO:0031169
data:
  {"annotated_genes":["SJAG_04031","SJAG_04032","SJAG_00792"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90176,90184],"is_not":false,"summary":null,"term":"GO:0031169"},{"annotations":[90135],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1905569"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a ferrichrome. Ferrichromes are any of a group of growth-promoting Fe(III) chelates formed by various genera of microfungi. They are homodetic cyclic hexapeptides made up of a tripeptide of glycine (or other small neutral amino acids) and a tripeptide of an N'acyl-N4-hydroxy-L-ornithine.","definition_xrefs":["ISBN:0198506732","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydroxymate-containing siderophore biosynthetic process","termid":"GO:0019539"},{"relation_name":"is_a","term_name":"ferrichrome metabolic process","termid":"GO:0031168"},{"relation_name":"is_a","term_name":"amide biosynthetic process","termid":"GO:0043604"},{"relation_name":"is_a","term_name":"organonitrogen compound biosynthetic process","termid":"GO:1901566"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00792":null,"SJAG_04031":null,"SJAG_04032":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"ferrichrome biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0031200","GO:0031199"],"synonyms":[{"name":"ferrichrome anabolism","type":"exact"},{"name":"ferrichrome biosynthesis","type":"exact"},{"name":"ferrichrome biosynthetic process, peptide formation","type":"narrow"},{"name":"ferrichrome biosynthetic process, peptide modification","type":"narrow"},{"name":"ferrichrome formation","type":"exact"},{"name":"ferrichrome synthesis","type":"exact"}],"termid":"GO:0031169","terms_by_termid":{"GO:0031169":null,"GO:1905569":null}}


id: GO:1900809
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of fumigaclavine C, a fungal ergot alkaloid.","definition_xrefs":["GOC:TermGenie","PMID:26972831","GOC:di","PMID:15933009","PMID:23435153"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ergot alkaloid biosynthetic process","termid":"GO:0035837"},{"relation_name":"is_a","term_name":"acetate ester biosynthetic process","termid":"GO:1900620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"fumigaclavine C biosynthetic process","secondary_identifiers":["GO:1900807"],"synonyms":[{"name":"fumigaclavine C anabolism","type":"exact"},{"name":"fumigaclavine C biosynthesis","type":"exact"},{"name":"fumigaclavine C formation","type":"exact"},{"name":"fumigaclavine C metabolic process","type":"broad"},{"name":"fumigaclavine C metabolism","type":"broad"},{"name":"fumigaclavine C synthesis","type":"exact"}],"termid":"GO:1900809"}


id: FYPO:0001870
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of centromeres and associated kinetochores into a cluster at the nuclear periphery is normal (i.e. indistinguishable from wild type). Centromere-kinetochore complexes normally cluster near the old spindle pole body during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization phenotype during vegetative growth","termid":"FYPO:0001337"},{"relation_name":"is_a","term_name":"normal mitotic cell cycle process","termid":"FYPO:0002741"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000138","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal centromere clustering at nuclear periphery","synonyms":[{"name":"normal centromere clustering at SPB","type":"related"},{"name":"normal centromere clustering at nuclear periphery during interphase of mitotic cell cycle","type":"exact"},{"name":"normal centromere clustering at nuclear periphery during mitotic cell cycle","type":"exact"},{"name":"normal centromere clustering at nuclear periphery during vegetative growth","type":"exact"},{"name":"normal centromere clustering at spindle pole body","type":"related"},{"name":"normal centromere-SPB clustering","type":"related"},{"name":"normal kinetochore clustering at SPB","type":"related"},{"name":"normal kinetochore clustering at spindle pole body","type":"related"},{"name":"normal kinetochore localization at spindle pole body","type":"related"}],"termid":"FYPO:0001870"}


id: PBO:0056804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MFSD2 lysolipid transporter A, lysophospholipid","termid":"PBO:0056804"}


id: GO:0008885
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: gamma-L-glutamyl-L-cysteinyl-glycine + spermidine + ATP = N1-(gamma-L-glutamyl-L-cysteinyl-glycyl)-spermidine + ADP + phosphate.","definition_xrefs":["EC:6.3.1.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-ammonia (or amide) ligase activity","termid":"GO:0016880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"glutathionylspermidine synthase activity","secondary_identifiers":["RHEA:21272","MetaCyc:GSPSYN-RXN"],"synonyms":[{"name":"GSP synthetase activity","type":"related"},{"name":"gamma-L-glutamyl-L-cysteinyl-glycine:spermidine ligase (ADP-forming) [spermidine is numbered so that atom N-1 is in the amino group of the aminopropyl part of the molecule]","type":"related"},{"name":"gamma-L-glutamyl-L-cysteinyl-glycine:spermidine ligase (ADP-forming) activity","type":"related"},{"name":"glutathione:spermidine ligase (ADP-forming) activity","type":"related"},{"name":"glutathionylspermidine synthetase activity","type":"related"}],"termid":"GO:0008885"}


id: GO:0052709
data:
  {"annotated_genes":["SJAG_00832"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99686],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052707"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of N-alpha,N-alpha,N-alpha-trimethyl-L-histidine, also known as histidine betaine or hercynine, a trimethylated derivative of histidine.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid betaine biosynthetic process","termid":"GO:0006578"},{"relation_name":"is_a","term_name":"N-alpha,N-alpha,N-alpha-trimethyl-L-histidine metabolic process","termid":"GO:0052708"},{"relation_name":"is_a","term_name":"L-amino acid biosynthetic process","termid":"GO:0170034"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid biosynthetic process","termid":"GO:0170043"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00832":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"N-alpha,N-alpha,N-alpha-trimethyl-L-histidine anabolism","type":"exact"},{"name":"N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthesis","type":"exact"},{"name":"N-alpha,N-alpha,N-alpha-trimethyl-L-histidine formation","type":"exact"},{"name":"N-alpha,N-alpha,N-alpha-trimethyl-L-histidine synthesis","type":"exact"},{"name":"hercynine anabolism","type":"exact"},{"name":"hercynine biosynthesis","type":"exact"},{"name":"hercynine biosynthetic process","type":"exact"},{"name":"hercynine formation","type":"exact"},{"name":"hercynine synthesis","type":"exact"},{"name":"histidine betaine anabolism","type":"exact"},{"name":"histidine betaine biosynthesis","type":"exact"},{"name":"histidine betaine biosynthetic process","type":"exact"},{"name":"histidine betaine formation","type":"exact"},{"name":"histidine betaine synthesis","type":"exact"}],"termid":"GO:0052709","terms_by_termid":{"GO:0052707":null}}


id: FYPO:0003786
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at the central core of the centromeric regions is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to centromeric chromatin during vegetative growth","termid":"FYPO:0003744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to centromere central core during vegetative growth","secondary_identifiers":["FYPO:0003765"],"synonyms":[{"name":"abolished protein localisation to chromatin at centromere central core during vegetative growth","type":"exact"},{"name":"abolished protein localization to centromere central core during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to chromatin at centromere central core during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to chromatin at centromere central core during vegetative growth","type":"exact"},{"name":"protein localization to centromere central core abolished during vegetative growth","type":"exact"},{"name":"protein localization to chromatin at centromere central core abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0003786"}


id: GO:0047536
data:
  {"annotated_genes":["SJAG_03312","SJAG_04988","SJAG_04678"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71513,94419,95440],"is_not":false,"summary":null,"term":"GO:0047536"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + L-2-aminoadipate = 2-oxoadipate + L-glutamate.","definition_xrefs":["EC:2.6.1.39","RHEA:12601"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03312":null,"SJAG_04678":null,"SJAG_04988":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016769","GO:0016740"],"is_obsolete":false,"name":"2-aminoadipate transaminase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:2-AMINOADIPATE-AMINOTRANSFERASE-RXN","Reactome:R-HSA-508561","Reactome:R-HSA-70952","KEGG_REACTION:R01939"],"synonyms":[{"name":"2-aminoadipate aminotransferase activity","type":"exact"},{"name":"2-aminoadipic aminotransferase activity","type":"related"},{"name":"L-2-aminoadipate:2-oxoglutarate aminotransferase activity","type":"related"},{"name":"alpha-aminoadipate aminotransferase activity","type":"related"},{"name":"glutamate-alpha-ketoadipate transaminase activity","type":"related"},{"name":"glutamic-ketoadipic transaminase activity","type":"related"}],"termid":"GO:0047536","terms_by_termid":{"GO:0047536":null}}


id: GO:0010942
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cell death (obsolete GO:0010942)","termid":"GO:0010942"}


id: PBO:0067140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 188, pseudogene","termid":"PBO:0067140"}


id: PBO:0061843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Opa interacting protein 5","termid":"PBO:0061843"}


id: PBO:0076758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymine-DNA glycosylase pseudogene 1","termid":"PBO:0076758"}


id: PBO:0059589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 1","termid":"PBO:0059589"}


id: PBO:0077388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 128","termid":"PBO:0077388"}


id: GO:0032490
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a stimulus from a molecule of bacterial origin is received and converted into a molecular signal.","definition_xrefs":["GOC:rl","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to molecule of bacterial origin","termid":"GO:0002237"},{"relation_name":"is_a","term_name":"detection of chemical stimulus","termid":"GO:0009593"},{"relation_name":"is_a","term_name":"detection of external biotic stimulus","termid":"GO:0098581"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of molecule of bacterial origin","synonyms":[{"name":"detection of bacteria associated molecule","type":"exact"},{"name":"detection of bacterial associated molecule","type":"exact"},{"name":"detection of bacterium associated molecule","type":"exact"}],"termid":"GO:0032490"}


id: PBO:0048848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gonadotropin releasing hormone 1","termid":"PBO:0048848"}


id: GO:0014023
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross section. Neural rod formation occurs during primary neurulation in teleosts.","definition_xrefs":["GOC:ef","GOC:dh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"primary neural tube formation","termid":"GO:0014020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural rod formation","termid":"GO:0014023"}


id: GO:1903999
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of eating behavior.","definition_xrefs":["PMID:11961051","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of eating behavior","termid":"GO:1903998"},{"relation_name":"is_a","term_name":"negative regulation of feeding behavior","termid":"GO:2000252"},{"relation_name":"negatively_regulates","term_name":"eating behavior","termid":"GO:0042755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of eating behavior","synonyms":[{"name":"down regulation of eating behavior","type":"exact"},{"name":"down regulation of eating behaviour","type":"exact"},{"name":"down-regulation of eating behavior","type":"exact"},{"name":"down-regulation of eating behaviour","type":"exact"},{"name":"downregulation of eating behavior","type":"exact"},{"name":"downregulation of eating behaviour","type":"exact"},{"name":"inhibition of eating behavior","type":"narrow"},{"name":"inhibition of eating behaviour","type":"narrow"},{"name":"negative regulation of eating behaviour","type":"exact"}],"termid":"GO:1903999"}


id: GO:0032237
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that initiates the activity of an inactive store-operated calcium channel.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of store-operated calcium channel activity","termid":"GO:1901341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"activation of store-operated calcium channel activity","termid":"GO:0032237"}


id: PBO:0055780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LON peptidase N-terminal domain and ring finger 2","termid":"PBO:0055780"}


id: PBO:0081895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 846","termid":"PBO:0081895"}


id: PBO:0048421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GATA zinc finger domain containing 2A","termid":"PBO:0048421"}


id: PBO:0041880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CATIP antisense RNA 2","termid":"PBO:0041880"}


id: GO:0042688
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a hemocyte precursor cell acquires the characteristics of a crystal cell, a class of cells that contain crystalline inclusions and are involved in the melanization of pathogenic material in the hemolymph.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemocyte differentiation","termid":"GO:0042386"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"crystal cell differentiation","termid":"GO:0042688"}


id: PBO:0054739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2148","termid":"PBO:0054739"}


id: PBO:0068410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein, transmembrane 1 pseudogene 1","termid":"PBO:0068410"}


id: PBO:0072052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 22","termid":"PBO:0072052"}


id: GO:0007463
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the R2/R5 photoreceptors commit to their cell fate. R2 and R5 are paired photoreceptors which contribute the outer rhabdomeres.","definition_xrefs":["PMID:3937883","PMID:3076112"],"direct_ancestors":[{"relation_name":"is_a","term_name":"compound eye photoreceptor fate commitment","termid":"GO:0001752"},{"relation_name":"part_of","term_name":"R2/R5 cell differentiation","termid":"GO:0048054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"R2/R5 cell fate commitment","termid":"GO:0007463"}


id: PBO:0041969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCDC12 pseudogene 1","termid":"PBO:0041969"}


id: GO:1901364
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving funalenone.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"cellular ketone metabolic process","termid":"GO:0042180"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"funalenone metabolic process","synonyms":[{"name":"funalenone metabolism","type":"exact"}],"termid":"GO:1901364"}


id: GO:0071248
data:
  {"annotated_genes":["SJAG_01344","SJAG_01233","SJAG_03799","SJAG_03879","SJAG_02599","SJAG_04454","SJAG_04403","SJAG_03497","SJAG_04516","SJAG_00988","SJAG_00044","SJAG_03631","SJAG_02858","SJAG_01351"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89192],"is_not":false,"summary":null,"term":"GO:0071248"},{"annotations":[89365,93086,93441,93125,104474,114203],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0098849"},{"annotations":[89366,93087,93442,104475,84992],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071276"},{"annotations":[106209,109403,110715,112171,94182,97043],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071277"},{"annotations":[110716],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035865"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to metal ion","termid":"GO:0010038"},{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00044":null,"SJAG_00988":null,"SJAG_01233":null,"SJAG_01344":null,"SJAG_01351":null,"SJAG_02599":null,"SJAG_02858":null,"SJAG_03497":null,"SJAG_03631":null,"SJAG_03799":null,"SJAG_03879":null,"SJAG_04403":null,"SJAG_04454":null,"SJAG_04516":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to metal ion","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cellular response to heavy metal","type":"narrow"},{"name":"cellular response to metal","type":"exact"}],"termid":"GO:0071248","terms_by_termid":{"GO:0035865":null,"GO:0071248":null,"GO:0071276":null,"GO:0071277":null,"GO:0098849":null}}


id: GO:0071564
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A SWI/SNF-type complex that is found in neural stem or progenitor cells, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, PHF10/BAF45A, ACTL6A/BAF53A genes. The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells.","definition_xrefs":["PMID:17640523","GOC:mah","GOC:ss"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SWI/SNF superfamily-type complex","termid":"GO:0070603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0005694","GO:0032991"],"is_obsolete":false,"name":"npBAF complex","termid":"GO:0071564"}


id: GO:0090440
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of abscisic acid from one side of a membrane to the other.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transmembrane transporter activity","termid":"GO:0008028"},{"relation_name":"is_a","term_name":"alcohol transmembrane transporter activity","termid":"GO:0015665"},{"relation_name":"is_a","term_name":"lipid transmembrane transporter activity","termid":"GO:0170055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"abscisic acid transmembrane transporter activity","synonyms":[{"name":"abscisic acid transporter activity","type":"exact"}],"termid":"GO:0090440"}


id: GO:0071227
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of oomycetes origin.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to molecule of oomycetes origin","termid":"GO:0002240"},{"relation_name":"is_a","term_name":"cellular response to biotic stimulus","termid":"GO:0071216"},{"relation_name":"part_of","term_name":"response to fungus","termid":"GO:0009620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to molecule of oomycetes origin","synonyms":[{"name":"cellular response to oomycetes associated molecule","type":"exact"}],"termid":"GO:0071227"}


id: SO:0002339
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that encodes for a scaRNA (small Cajal body-specific RNA).","definition_xrefs":["PMID:27775477","PMID:28869095"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snoRNA_gene","termid":"SO:0001267"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scaRNA_gene","synonyms":[{"name":"Small Cajal body-specific RNA gene","type":"exact"},{"name":"scaRNA gene","type":"exact"}],"termid":"SO:0002339"}


id: GO:0110019
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process where translation initiation recruits the 40S ribosomal subunits via an internal ribosome entry segment (IRES) before an AUG codon is encountered in an appropriate sequence context to initiate circular mRNA translation.","definition_xrefs":["PMID:28344080","GOC:sp","PMID:28281539","PMID:28344082"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cap-independent translational initiation of circular RNA","termid":"GO:0110018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0002181"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0002181"],"is_obsolete":false,"name":"IRES-dependent translational initiation of circular RNA","synonyms":[{"name":"IRES-dependent translational initiation of circRNA","type":"exact"}],"termid":"GO:0110019"}


id: GO:0015730
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of propionate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"short-chain fatty acid transmembrane transport","termid":"GO:0015913"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"propanoate transmembrane transport","synonyms":[{"name":"propanoate transport","type":"broad"},{"name":"propionate transport","type":"exact"}],"termid":"GO:0015730"}


id: PBO:0027303
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_thioredoxin-disulfide_reductase_activity","termid":"PBO:0027303"}


id: PBO:0016101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAD synthetase Nad1 (predicted)","termid":"PBO:0016101"}


id: PBO:0077206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane 6 superfamily member 1","termid":"PBO:0077206"}


id: PBO:0002739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human ZNF277 ortholog","termid":"PBO:0002739"}


id: PBO:0061873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OOEP antisense RNA 1","termid":"PBO:0061873"}


id: PBO:0087129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein; promotes elongation, regulates termination, and carries poly(A) mRNA from nucleus to cytoplasm; represses translation initiation by binding eIF4G; required for pre-mRNA splicing; interacts with E3 ubiquitin ligase Bre1p, linking histone ubiquitination to mRNA processing; may have role in telomere maintenance; dissociation from mRNAs promoted by Mtr10p; phosphorylated by Sky1p in cytoplasm; protein abundance increases in response to DNA replication stress","termid":"PBO:0087129"}


id: GO:0035642
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + (histone H3)-arginine (position 17) = S-adenosyl-L-homocysteine + (histone H3)-N-methyl-arginine (position 17). This reaction is the addition of a methyl group to the arginine residue at position 17 of histone H3.","definition_xrefs":["GOC:sp","PMID:11341840"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-arginine N-methyltransferase activity","termid":"GO:0016274"},{"relation_name":"is_a","term_name":"histone H3 methyltransferase activity","termid":"GO:0140938"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140096","GO:0003674","GO:0003824","GO:0016740","GO:0016741","GO:0008276"],"is_obsolete":false,"name":"histone H3R17 methyltransferase activity","synonyms":[{"name":"histone methylase activity (H3-R17 specific)","type":"exact"},{"name":"histone methyltransferase activity (H3-R17 specific)","type":"exact"},{"name":"histone-H3R17 methyltransferase activity","type":"exact"},{"name":"histone-arginine N-methyltransferase activity (H3-R17 specific)","type":"exact"}],"termid":"GO:0035642"}


id: GO:0097687
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A horn-shaped dinoflagellate antapex found in thecate species.","definition_xrefs":["GOC:at"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dinoflagellate antapex","termid":"GO:0097684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"dinoflagellate antapical horn","termid":"GO:0097687"}


id: PBO:0071692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37 pseudogene 24","termid":"PBO:0071692"}


id: GO:1905580
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ERBB3 signaling pathway.","definition_xrefs":["GOC:als","PMID:27353365","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of ERBB signaling pathway","termid":"GO:1901186"},{"relation_name":"is_a","term_name":"regulation of ERBB3 signaling pathway","termid":"GO:1905578"},{"relation_name":"positively_regulates","term_name":"ERBB3 signaling pathway","termid":"GO:0038129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of ERBB3 signaling pathway","synonyms":[{"name":"activation of ERBB3 signaling pathway","type":"narrow"},{"name":"activation of ERBB3 signalling pathway","type":"narrow"},{"name":"activation of HER3 signaling pathway","type":"narrow"},{"name":"activation of receptor tyrosine-protein kinase erbB-3 signaling pathway","type":"narrow"},{"name":"positive regulation of ERBB3 signalling pathway","type":"exact"},{"name":"positive regulation of HER3 signaling pathway","type":"exact"},{"name":"positive regulation of receptor tyrosine-protein kinase erbB-3 signaling pathway","type":"exact"},{"name":"up regulation of ERBB3 signaling pathway","type":"exact"},{"name":"up regulation of ERBB3 signalling pathway","type":"exact"},{"name":"up regulation of HER3 signaling pathway","type":"exact"},{"name":"up regulation of receptor tyrosine-protein kinase erbB-3 signaling pathway","type":"exact"},{"name":"up-regulation of ERBB3 signaling pathway","type":"exact"},{"name":"up-regulation of ERBB3 signalling pathway","type":"exact"},{"name":"up-regulation of HER3 signaling pathway","type":"exact"},{"name":"up-regulation of receptor tyrosine-protein kinase erbB-3 signaling pathway","type":"exact"},{"name":"upregulation of ERBB3 signaling pathway","type":"exact"},{"name":"upregulation of ERBB3 signalling pathway","type":"exact"},{"name":"upregulation of HER3 signaling pathway","type":"exact"},{"name":"upregulation of receptor tyrosine-protein kinase erbB-3 signaling pathway","type":"exact"}],"termid":"GO:1905580"}


id: PBO:0005209
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae PET127","termid":"PBO:0005209"}


id: GO:0070807
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of phialide development, a process that leads to the formation of phialides. Phialides are specialized cells that bud from the ends of metulae on the conidiophore tip.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell development","termid":"GO:0010720"},{"relation_name":"is_a","term_name":"regulation of phialide development","termid":"GO:0070805"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"phialide development","termid":"GO:0070790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of phialide development","termid":"GO:0070807"}


id: PBO:0047841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast proliferation associated lncRNA","termid":"PBO:0047841"}


id: PBO:0080263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 26 pseudogene","termid":"PBO:0080263"}


id: GO:0043000
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of Cystic Fibrosis Transmembrane conductance Regulator (CFTR) protein from the Golgi to the plasma membrane.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete Golgi to plasma membrane CFTR protein transport (obsolete GO:0043000)","synonyms":[{"name":"Golgi to plasma membrane cystic fibrosis transmembrane conductance regulator protein transport","type":"exact"}],"termid":"GO:0043000"}


id: GO:0015002
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the four-electron reduction of dioxygen (O2) to water, coupled to generation of a proton electrochemical gradient across a membrane.","definition_xrefs":["GOC:kd"],"gene_count":0,"genotype_count":0,"name":"obsolete heme-copper terminal oxidase activity (obsolete GO:0015002)","synonyms":[{"name":"haem-copper terminal oxidase activity","type":"exact"}],"termid":"GO:0015002"}


id: GO:0004687
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + myosin-light-chain = ADP + myosin-light-chain phosphate.","definition_xrefs":["EC:2.7.11.18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine kinase activity","termid":"GO:0004674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0003674","GO:0140096","GO:0004672","GO:0003824","GO:0016740","GO:0016301"],"is_obsolete":false,"name":"myosin light chain kinase activity","secondary_identifiers":["Reactome:R-HSA-5668978","Reactome:R-HSA-445813","MetaCyc:2.7.11.18-RXN","RHEA:22004"],"synonyms":[{"name":"ATP:myosin-light-chain O-phosphotransferase","type":"broad"},{"name":"ATP:myosin-light-chain O-phosphotransferase activity","type":"related"},{"name":"MLCK","type":"related"},{"name":"MLCkase activity","type":"related"},{"name":"STK18","type":"related"},{"name":"calcium/calmodulin-dependent myosin light chain kinase activity","type":"related"},{"name":"myosin kinase activity","type":"related"},{"name":"myosin light chain protein kinase activity","type":"related"},{"name":"myosin light-chain kinase","type":"broad"},{"name":"myosin light-chain kinase (phosphorylating)","type":"related"},{"name":"myosin light-chain kinase (phosphorylating) activity","type":"related"},{"name":"myosin light-chain kinase activity","type":"related"},{"name":"myosin-light-chain kinase activity","type":"exact"},{"name":"smooth-muscle-myosin-light-chain kinase activity","type":"narrow"}],"termid":"GO:0004687"}


id: PBO:0082547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cell wall protein with similarity to glucanases; scw4 scw10 double mutants exhibit defects in mating; SCW4 has a paralog, SCW10, that arose from the whole genome duplication","termid":"PBO:0082547"}


id: PBO:0067491
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 625, pseudogene","termid":"PBO:0067491"}


id: GO:1901481
data:
  {"annotated_genes":["SJAG_03256"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99892],"is_not":false,"summary":null,"term":"GO:1901481"}]},"cv_name":"biological_process","definition":"Any L-glutamate import that is involved in cellular response to nitrogen starvation.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-glutamate import","termid":"GO:0051938"},{"relation_name":"part_of","term_name":"cellular response to nitrogen starvation","termid":"GO:0006995"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03256":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"L-glutamate import involved in cellular response to nitrogen starvation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"L-glutamate uptake involved in cellular response to nitrogen starvation","type":"exact"}],"termid":"GO:1901481","terms_by_termid":{"GO:1901481":null}}


id: GO:0048652
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which individuals that have the potential to develop any of several possible distinct developmental paths have their individual developmental fates determined in response to genetic cues.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyphenic determination","termid":"GO:0048647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"polyphenic determination, influence by genetic factors","termid":"GO:0048652"}


id: PBO:0027810
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_export_from_nucleus","termid":"PBO:0027810"}


id: GO:1901755
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of vitamin D3.","definition_xrefs":["Unipathway:UPA00955","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin D biosynthetic process","termid":"GO:0042368"},{"relation_name":"is_a","term_name":"vitamin D3 metabolic process","termid":"GO:0070640"},{"relation_name":"is_a","term_name":"steroid hormone biosynthetic process","termid":"GO:0120178"},{"relation_name":"is_a","term_name":"secondary alcohol biosynthetic process","termid":"GO:1902653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0006766","GO:0008150"],"is_obsolete":false,"name":"vitamin D3 biosynthetic process","synonyms":[{"name":"calciol anabolism","type":"exact"},{"name":"calciol biosynthesis","type":"exact"},{"name":"calciol biosynthetic process","type":"exact"},{"name":"calciol formation","type":"exact"},{"name":"calciol synthesis","type":"exact"},{"name":"cholecalciferol biosynthesis","type":"exact"},{"name":"cholecalciferol biosynthetic process","type":"exact"},{"name":"vitamin D3 anabolism","type":"exact"},{"name":"vitamin D3 biosynthesis","type":"exact"},{"name":"vitamin D3 formation","type":"exact"},{"name":"vitamin D3 synthesis","type":"exact"}],"termid":"GO:1901755"}


id: GO:0019365
data:
  {"annotated_genes":["SJAG_00957","SJAG_04467","SJAG_03298"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85129],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034355"},{"annotations":[105669,86746,85130],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019358"}]},"cv_name":"biological_process","definition":"Any process that generates a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base, from derivatives of them without de novo synthesis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyridine nucleotide biosynthetic process","termid":"GO:0019363"},{"relation_name":"is_a","term_name":"nucleotide salvage","termid":"GO:0043173"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00957":null,"SJAG_03298":null,"SJAG_04467":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"pyridine nucleotide salvage","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pyridine nucleotide cycling","type":"exact"}],"termid":"GO:0019365","terms_by_termid":{"GO:0019358":null,"GO:0034355":null}}


id: GO:0048671
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of collateral sprouting.","definition_xrefs":["GOC:dph","GOC:jid","GOC:dgh","GOC:lm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell growth","termid":"GO:0030308"},{"relation_name":"is_a","term_name":"negative regulation of developmental growth","termid":"GO:0048640"},{"relation_name":"is_a","term_name":"regulation of collateral sprouting","termid":"GO:0048670"},{"relation_name":"is_a","term_name":"negative regulation of axonogenesis","termid":"GO:0050771"},{"relation_name":"negatively_regulates","term_name":"collateral sprouting","termid":"GO:0048668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of collateral sprouting","synonyms":[{"name":"down regulation of collateral sprouting","type":"exact"},{"name":"down-regulation of collateral sprouting","type":"exact"},{"name":"downregulation of collateral sprouting","type":"exact"},{"name":"inhibition of collateral sprouting","type":"narrow"}],"termid":"GO:0048671"}


id: PBO:0053336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 189","termid":"PBO:0053336"}


id: GO:1903569
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein localization to ciliary membrane.","definition_xrefs":["GOC:cilia","PMID:22072986","GO_REF:0000058","GOC:TermGenie","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein localization to cilium","termid":"GO:1903566"},{"relation_name":"is_a","term_name":"regulation of protein localization to ciliary membrane","termid":"GO:1903567"},{"relation_name":"is_a","term_name":"positive regulation of protein localization to cell periphery","termid":"GO:1904377"},{"relation_name":"is_a","term_name":"positive regulation of protein localization to membrane","termid":"GO:1905477"},{"relation_name":"positively_regulates","term_name":"protein localization to ciliary membrane","termid":"GO:1903441"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein localization to ciliary membrane","synonyms":[{"name":"activation of protein localisation in ciliary membrane","type":"narrow"},{"name":"activation of protein localisation to ciliary membrane","type":"narrow"},{"name":"activation of protein localization in ciliary membrane","type":"narrow"},{"name":"activation of protein localization to ciliary membrane","type":"narrow"},{"name":"positive regulation of protein localisation in ciliary membrane","type":"exact"},{"name":"positive regulation of protein localisation to ciliary membrane","type":"exact"},{"name":"positive regulation of protein localization in ciliary membrane","type":"exact"},{"name":"up regulation of protein localisation in ciliary membrane","type":"exact"},{"name":"up regulation of protein localisation to ciliary membrane","type":"exact"},{"name":"up regulation of protein localization in ciliary membrane","type":"exact"},{"name":"up regulation of protein localization to ciliary membrane","type":"exact"},{"name":"up-regulation of protein localisation in ciliary membrane","type":"exact"},{"name":"up-regulation of protein localisation to ciliary membrane","type":"exact"},{"name":"up-regulation of protein localization in ciliary membrane","type":"exact"},{"name":"up-regulation of protein localization to ciliary membrane","type":"exact"},{"name":"upregulation of protein localisation in ciliary membrane","type":"exact"},{"name":"upregulation of protein localisation to ciliary membrane","type":"exact"},{"name":"upregulation of protein localization in ciliary membrane","type":"exact"},{"name":"upregulation of protein localization to ciliary membrane","type":"exact"}],"termid":"GO:1903569"}


id: GO:0030033
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of a microvillus, a thin cylindrical membrane-covered projection on the surface of a cell.","definition_xrefs":["ISBN:0815316194","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microvillus organization","termid":"GO:0032528"},{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection assembly","termid":"GO:0120031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"microvillus assembly","synonyms":[{"name":"microvillus biogenesis","type":"related"}],"termid":"GO:0030033"}


id: GO:0099017
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which localization of a protein is maintained at the cell tip.","definition_xrefs":["GOC:vw","PMID:12894167","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of protein location in cell","termid":"GO:0032507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"maintenance of protein localization at cell tip","synonyms":[{"name":"maintenance of protein location at cell tip","type":"exact"}],"termid":"GO:0099017"}


id: GO:0032719
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of TRAIL production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of TRAIL production","termid":"GO:0032679"},{"relation_name":"is_a","term_name":"negative regulation of tumor necrosis factor superfamily cytokine production","termid":"GO:1903556"},{"relation_name":"negatively_regulates","term_name":"TRAIL production","termid":"GO:0032639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of TRAIL production","secondary_identifiers":["GO:0045555"],"synonyms":[{"name":"down regulation of TRAIL production","type":"exact"},{"name":"down-regulation of TRAIL production","type":"exact"},{"name":"downregulation of TRAIL production","type":"exact"},{"name":"inhibition of TRAIL production","type":"narrow"},{"name":"negative regulation of TRAIL biosynthetic process","type":"narrow"}],"termid":"GO:0032719"}


id: PBO:0018156
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nse5Ts Suppressor","termid":"PBO:0018156"}


id: PBO:0070635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 6","termid":"PBO:0070635"}


id: PBO:0081857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 790","termid":"PBO:0081857"}


id: PR:O74959
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A retinol dehydrogenase 13 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized oxidoreductase C736.13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC736.13","secondary_identifiers":["UniProtKB:O74959"],"synonyms":[{"name":"Spom972h-RDH13","type":"exact"}],"termid":"PR:O74959"}


id: PBO:0072686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RUNDC3A antisense RNA 1","termid":"PBO:0072686"}


id: PBO:0001257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor Hsr1","termid":"PBO:0001257"}


id: PBO:0076153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SURP and G-patch domain containing 1","termid":"PBO:0076153"}


id: GO:0004194
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of peptide bonds. Preferential cleavage: hydrophobic, preferably aromatic, residues in P1 and P1' positions. Cleaves Phe1-Val2, Gln4-His5, Glu13-Ala14, Ala14-Leu15, Leu15-Tyr16, Tyr16-Leu17, Gly23-Phe24, Phe24-Phe25 and Phe25-Tyr26 bonds in the B chain of insulin.","definition_xrefs":["EC:3.4.23.1"],"gene_count":0,"genotype_count":0,"name":"obsolete pepsin A activity (obsolete GO:0004194)","synonyms":[{"name":"lactated pepsin elixir","type":"related"},{"name":"pepsin A activity","type":"exact"},{"name":"P I","type":"related"},{"name":"P II","type":"related"},{"name":"elixir lactate of pepsin","type":"related"},{"name":"fundus-pepsin","type":"related"},{"name":"lactated pepsin","type":"related"},{"name":"pepsin D","type":"related"},{"name":"pepsin R","type":"related"},{"name":"pepsin activity","type":"broad"},{"name":"pepsin fortior","type":"related"}],"termid":"GO:0004194"}


id: PBO:0028054
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_horsetail_movement","termid":"PBO:0028054"}


id: PBO:0048706
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine receptor alpha 3","termid":"PBO:0048706"}


id: PBO:0017479
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-causally_upstream_of_or_within","termid":"PBO:0017479"}


id: PBO:0029845
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_acetylation","termid":"PBO:0029845"}


id: MOD:00918
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that modifies an L-tryptophan residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by amino acid modified","termid":"MOD:01157"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified L-tryptophan residue","synonyms":[{"name":"ModTrp","type":"exact"}],"termid":"MOD:00918"}


id: GO:0097677
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a member of the signal transducers and activators of transcription (STAT) protein family. STATs are, as the name indicates, both signal transducers and transcription factors. STATs are activated by cytokines and some growth factors and thus control important biological processes including cell growth, cell differentiation, apoptosis and immune responses.","definition_xrefs":["PMID:21447371","GOC:mr","PMID:24470978","InterPro:IPR001217"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II-specific DNA-binding transcription factor binding","termid":"GO:0061629"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"STAT family protein binding","synonyms":[{"name":"signal transducers and activators of transcription family protein binding","type":"exact"}],"termid":"GO:0097677"}


id: PBO:0044670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"damage specific DNA binding protein 1","termid":"PBO:0044670"}


id: GO:0050390
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-valine + H+ = 2-methylpropanamine + CO2.","definition_xrefs":["RHEA:18989","EC:4.1.1.14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"valine decarboxylase activity","secondary_identifiers":["KEGG_REACTION:R01437","MetaCyc:VALINE-DECARBOXYLASE-RXN","UM-BBD_reactionID:r1052"],"synonyms":[{"name":"L-valine carboxy-lyase (2-methylpropanamine-forming)","type":"related"},{"name":"L-valine carboxy-lyase activity","type":"related"},{"name":"leucine decarboxylase activity","type":"related"}],"termid":"GO:0050390"}


id: GO:0160113
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The structure which joins the B10 protofilament of the B tubule to the A1 protofilament of the A tubule within an axonemal microtubule doublet.","definition_xrefs":["GOC:krc","PMID:29430673","PMID:37295417"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"axonemal outer doublet","termid":"GO:0097545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"axonemal microtubule doublet inner junction","termid":"GO:0160113"}


id: GO:0072115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the head kidney are generated and organized. The head kidney is a pronephros that consists of fused bilateral lobes located in the anterior part of the kidney.","definition_xrefs":["GOC:mtg_kidney_jan10","ZFA:0000669"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pronephros morphogenesis","termid":"GO:0072114"},{"relation_name":"part_of","term_name":"head kidney development","termid":"GO:0072113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"head kidney morphogenesis","termid":"GO:0072115"}


id: GO:2000177
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of neural precursor cell proliferation.","definition_xrefs":["GOC:yaf","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell population proliferation","termid":"GO:0042127"},{"relation_name":"regulates","term_name":"neural precursor cell proliferation","termid":"GO:0061351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of neural precursor cell proliferation","termid":"GO:2000177"}


id: GO:0180027
data:
  {"annotated_genes":["SJAG_03345","SJAG_03657","SJAG_04612","SJAG_05022"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83918,85363,99469,109028],"is_not":false,"summary":null,"term":"GO:0180027"}]},"cv_name":"biological_process","definition":"A protein quality control pathway that removes ubiquitinated proteins from the nuclear inner membrane before transferring them to the proteasome for degradation.","definition_xrefs":["PMID:37694715"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein quality control by the ubiquitin-proteasome system","termid":"GO:0071630"}],"gene_count":4,"genes_by_uniquename":{"SJAG_03345":null,"SJAG_03657":null,"SJAG_04612":null,"SJAG_05022":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0008150","GO:0030163"],"is_obsolete":false,"name":"inner nuclear membrane-associated protein degradation pathway","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"INMAD pathway","type":"exact"}],"termid":"GO:0180027","terms_by_termid":{"GO:0180027":null}}


id: FYECO:0000160
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which tacrolimus was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ tacrolimus","secondary_identifiers":["FYECO:0000029"],"synonyms":[{"name":"FK506 added","type":"exact"},{"name":"tacrolimus added","type":"exact"}],"termid":"FYECO:0000160"}


id: PBO:0031082
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-DNA_metabolism_phenotype","termid":"PBO:0031082"}


id: FYPO:0000800
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the concentration of a substance released into the growth medium by cells is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered effect on growth medium","termid":"FYPO:0001155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001155"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001155"],"is_obsolete":false,"name":"increased concentration of substance in growth medium","synonyms":[{"name":"increased accumulation of substance in growth medium","type":"related"},{"name":"increased level of substance in growth medium","type":"exact"},{"name":"increased release of substance into growth medium","type":"related"}],"termid":"FYPO:0000800"}


id: PBO:0040277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATOSB pseudogene 1","termid":"PBO:0040277"}


id: GO:1901642
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of nucleoside across a membrane.","definition_xrefs":["GOC:TermGenie","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside transport","termid":"GO:0015858"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"nucleoside transmembrane transport","synonyms":[{"name":"nucleoside membrane transport","type":"exact"}],"termid":"GO:1901642"}


id: GO:0033872
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-phosphoadenylyl sulfate + [heparan sulfate]-glucosamine = adenosine 3',5'-bisphosphate + [heparan sulfate]-glucosamine 3-sulfate.","definition_xrefs":["EC:2.8.2.30"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heparan sulfate sulfotransferase activity","termid":"GO:0034483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016782"],"is_obsolete":false,"name":"[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity","secondary_identifiers":["MetaCyc:2.8.2.30-RXN"],"synonyms":[{"name":"3'-phosphoadenylyl-sulfate:[heparan sulfate]-glucosamine 3-sulfotransferase activity","type":"broad"},{"name":"3-OST-3","type":"related"},{"name":"glucosaminyl 3-O-sulfotransferase 3 activity","type":"related"},{"name":"glucosaminyl 3-O-sulfotransferase 3a, 3b activity","type":"related"},{"name":"heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3 activity","type":"related"},{"name":"heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3A activity","type":"related"},{"name":"heparin-glucosamine 3-sulfotransferase 3 activity","type":"related"},{"name":"isoform/isozyme 3a and 3b (3-OST-3A, 3-OST-3B, HS3ST3A, HS3ST3B)","type":"related"}],"termid":"GO:0033872"}


id: GO:1903534
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of lactose biosynthetic process.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:12018418","GOC:mr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of carbohydrate biosynthetic process","termid":"GO:0043255"},{"relation_name":"regulates","term_name":"lactose biosynthetic process","termid":"GO:0005989"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"regulation of lactose biosynthetic process","synonyms":[{"name":"regulation of lactose anabolism","type":"exact"},{"name":"regulation of lactose biosynthesis","type":"exact"},{"name":"regulation of lactose formation","type":"exact"},{"name":"regulation of lactose synthesis","type":"exact"}],"termid":"GO:1903534"}


id: GO:0019089
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The transfer of virions in order to create new infection.","definition_xrefs":["ISBN:0781702534"],"gene_count":0,"genotype_count":0,"name":"obsolete transmission of virus (obsolete GO:0019089)","synonyms":[{"name":"viral transmission","type":"exact"}],"termid":"GO:0019089"}


id: PBO:0056640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 15","termid":"PBO:0056640"}


id: FYPO:0007976
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A microtubule cytoskeleton organization phenotype observed during anaphase B in which the duration of interpolar microtubule growth events is longer.","definition_xrefs":["PomBase:mlr","PMID:35293864"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal duration of microtubule growth event","termid":"FYPO:0007956"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000054","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased duration of interpolar microtubule growth events during anaphase B","termid":"FYPO:0007976"}


id: PBO:0002010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho-type GTPase activating protein Rga2 (predicted)","termid":"PBO:0002010"}


id: PBO:0028212
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-signal_transduction_phenotype","termid":"PBO:0028212"}


id: GO:1900859
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of brevianamide F biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of brevianamide F biosynthetic process (obsolete GO:1900859)","synonyms":[{"name":"down regulation of brevianamide F biosynthetic process","type":"exact"},{"name":"down-regulation of brevianamide F biosynthetic process","type":"exact"},{"name":"downregulation of brevianamide F biosynthetic process","type":"exact"}],"termid":"GO:1900859"}


id: MOD:01893
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to N6-malonyl-L-lysine.","definition_xrefs":["PubMed:8349414","PubMed:21908771","RESID:AA0568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N6-acylated L-lysine","termid":"MOD:01875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N6-malonyl-L-lysine","synonyms":[{"name":"(2S)-2-amino-6-[(carboxyacetyl)amino]hexanoic acid","type":"exact"},{"name":"2-azanyl-6-[(carboxyacetyl)azanyl]hexanoic acid","type":"exact"},{"name":"MOD_RES N6-malonyllysine","type":"exact"},{"name":"N(epsilon)-(malonyl)lysine","type":"exact"},{"name":"N6-(carboxyacetyl)lysine","type":"exact"},{"name":"N6-malonyl-L-lysine","type":"exact"},{"name":"N6-malonyllysine","type":"exact"},{"name":"malonyllysine","type":"exact"}],"termid":"MOD:01893"}


id: GO:0072031
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the S1 portion of the proximal convoluted tubule over time, from its formation to the mature structure. The S1 portion is the initial portion of the proximal convoluted tubule and is responsible for avid reabsorption of water and solutes.","definition_xrefs":["GOC:mtg_kidney_jan10","MA:0002612"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube development","termid":"GO:0035295"},{"relation_name":"part_of","term_name":"proximal convoluted tubule development","termid":"GO:0072019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"proximal convoluted tubule segment 1 development","synonyms":[{"name":"S1 development","type":"exact"}],"termid":"GO:0072031"}


id: GO:0004486
data:
  {"annotated_genes":["SJAG_00106","SJAG_01126","SJAG_04156"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100827],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004487"},{"annotations":[104396,100828,108462],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004488"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 5,10-methylenetetrahydrofolate + NAD(P)+ = 5,10-methenyltetrahydrofolate + NAD(P)H + H+.","definition_xrefs":["EC:1.5.1.15"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor","termid":"GO:0016646"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00106":null,"SJAG_01126":null,"SJAG_04156":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:1.5.1.5","Reactome:R-HSA-200644","Reactome:R-HSA-200718"],"synonyms":[{"name":"5,10-methylene-THF dehydrogenase activity","type":"exact"},{"name":"N5,N10-methylenetetrahydrofolate dehydrogenase activity","type":"related"}],"termid":"GO:0004486","terms_by_termid":{"GO:0004487":null,"GO:0004488":null}}


id: GO:0039575
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host TYK2 (tyrosine kinase 2) activity by stopping, preventing or reducing phosphorylation and thereby activation of TYK2.","definition_xrefs":["PMID:19254804","PMID:16987978","PMID:10523853"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host TYK2 activity by negative regulation of TYK2 tyrosine phosphorylation (obsolete GO:0039575)","synonyms":[{"name":"inhibition by virus of host TYK2 activation","type":"broad"},{"name":"inhibition by virus of host TYK2 phosphorylation","type":"exact"}],"termid":"GO:0039575"}


id: PBO:0055168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2591","termid":"PBO:0055168"}


id: GO:0075527
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which bases in viral mRNA are chemically altered during viral transcription. This is usually the incorporation of 1 - 6 additional nucleotides, which shifts the reading frame, allowing the generation of different protein products or through a specific nucleotide change that eliminates the termination codon.","definition_xrefs":["PMID:1629949","VZ:857"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"},{"relation_name":"part_of","term_name":"viral transcription","termid":"GO:0019083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral RNA editing","synonyms":[{"name":"RNA editing involved in viral mRNA transcription","type":"exact"}],"termid":"GO:0075527"}


id: PBO:0038667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA synthetase long chain family member 3","termid":"PBO:0038667"}


id: GO:0106073
data:
  {"annotated_genes":["SJAG_03764"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94466],"is_not":false,"summary":null,"term":"GO:0106073"}]},"cv_name":"molecular_function","definition":"Catalysis of the addition of the third glucose residue to the lipid-linked oligosaccharide precursor for N-linked glycosylation; the transfer of glucose from dolichyl phosphate glucose (Dol-P-Glc) on to the lipid-linked oligosaccharide Glc(2)Man(9)GlcNAc(2)-PP-Dol.","definition_xrefs":["PMID:9597543","GOC:ha"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosyltransferase activity","termid":"GO:0046527"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03764":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:2.4.1.256","RHEA:29543"],"termid":"GO:0106073","terms_by_termid":{"GO:0106073":null}}


id: GO:0007425
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell fate determination process in which a cell becomes capable of differentiating autonomously into an epithelial cell within an open tracheal system regardless of its environment; upon determination, the cell fate cannot be reversed. Tracheal cells are set aside as 10 clusters of approximately 80 cells on each side of the embryo (termed tracheal placodes). An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:mtg_sensu","PMID:11063940"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate determination","termid":"GO:0001709"},{"relation_name":"part_of","term_name":"open tracheal system development","termid":"GO:0007424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial cell fate determination, open tracheal system","secondary_identifiers":["GO:0046846"],"synonyms":[{"name":"tracheal cell fate determination","type":"broad"},{"name":"tracheal epithelial cell fate determination","type":"exact"},{"name":"tracheal placode cell fate determination","type":"related"}],"termid":"GO:0007425"}


id: PBO:0035748
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H2A_phosphorylation_at_centromere_outer_repeat_during_vegetative_growth","termid":"PBO:0035748"}


id: PBO:0082307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Aspartic protease; hyperglycosylated member of the yapsin family of proteases, attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; involved in nutrient limitation-induced cleavage of the extracellular inhibitory domain of signaling mucin Msb2p, resulting in activation of the filamentous growth MAPK pathway; involved with other yapsins in the cell wall integrity response; role in KEX2-independent processing of the alpha factor precursor","termid":"PBO:0082307"}


id: PR:P87309
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mde2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87309"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mei4-dependent protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC31F10.08","synonyms":[{"name":"Spom972h-mde2","type":"exact"}],"termid":"PR:P87309"}


id: PBO:0076722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trichoplein keratin filament binding","termid":"PBO:0076722"}


id: GO:0036194
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A prolongation or process extending from a muscle cell. A muscle cell is a mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns.","definition_xrefs":["GOC:kmv","PMID:15930100","PMID:22464329","CL:0000187"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection","termid":"GO:0120025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"muscle cell projection","synonyms":[{"name":"muscle arm","type":"narrow"},{"name":"myocyte projection","type":"exact"},{"name":"myopodia","type":"narrow"}],"termid":"GO:0036194"}


id: GO:0050084
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-mannitol 1-phosphate + H2O = D-mannitol + 2 H+ + phosphate.","definition_xrefs":["EC:3.1.3.22","RHEA:19537"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016788","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"mannitol-1-phosphatase activity","secondary_identifiers":["MetaCyc:MANNITOL-1-PHOSPHATASE-RXN","KEGG_REACTION:R02167"],"synonyms":[{"name":"D-mannitol-1-phosphate phosphohydrolase activity","type":"related"},{"name":"mannitol-1-phosphate phosphatase activity","type":"related"}],"termid":"GO:0050084"}


id: PBO:0028900
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_kinetochore_during_vegetative_growth","termid":"PBO:0028900"}


id: GO:0090093
data:
  {"annotated_genes":["SJAG_04771","SJAG_04666"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83635,88489],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140748"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of fungal-type cell wall beta-glucan biosynthesis, the chemical reactions and pathways resulting in the formation of beta-glucans, compounds composed of glucose residues linked by beta-D-glucosidic bonds, found in the walls of fungal cells.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell wall macromolecule metabolic process","termid":"GO:0010981"},{"relation_name":"is_a","term_name":"regulation of beta-glucan biosynthetic process","termid":"GO:0032951"},{"relation_name":"is_a","term_name":"regulation of fungal-type cell wall biogenesis","termid":"GO:0032995"},{"relation_name":"regulates","term_name":"fungal-type cell wall beta-glucan biosynthetic process","termid":"GO:0070880"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04666":null,"SJAG_04771":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0005975","GO:0071554","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"regulation of fungal-type cell wall beta-glucan biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0090093","terms_by_termid":{"GO:0140748":null}}


id: GO:0033159
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the vectorial transfer of a protein from the cytoplasm into the nucleus, across the nuclear membrane.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of protein import into nucleus, translocation (obsolete GO:0033159)","synonyms":[{"name":"negative regulation of protein import into cell nucleus, translocation","type":"exact"}],"termid":"GO:0033159"}


id: MOD:01831
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-carboxamidomethyl-L-cysteine sulfone.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"S-carboxamidomethyl-L-cysteine","termid":"MOD:01060"},{"relation_name":"is_a","term_name":"iodoacetamide derivatized residue","termid":"MOD:00397"},{"relation_name":"is_a","term_name":"sulfur oxygenated L-cysteine","termid":"MOD:00708"},{"relation_name":"is_a","term_name":"sulfur dioxygenated residue","termid":"MOD:01855"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-carboxamidomethyl-L-cysteine sulfone","synonyms":[{"name":"CamCO2","type":"exact"},{"name":"S-carbamoylmethyl-L-cysteine sulfone","type":"exact"}],"termid":"MOD:01831"}


id: PBO:0044840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 128","termid":"PBO:0044840"}


id: PBO:0074141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 35 member B1","termid":"PBO:0074141"}


id: GO:1905347
data:
  {"annotated_genes":["SJAG_01044","SJAG_00623"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[113123,97568],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048476"}]},"cv_name":"cellular_component","definition":"A protein complex which is capable of endodeoxyribonuclease activity.","definition_xrefs":["GOC:bhm","GO_REF:0000088","PMID:18413719","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endonuclease complex","termid":"GO:1905348"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00623":null,"SJAG_01044":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"endodeoxyribonuclease complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Mus81-Eme1 complex","type":"narrow"},{"name":"Mus81-Eme2 complex","type":"narrow"}],"termid":"GO:1905347","terms_by_termid":{"GO:0048476":null}}


id: PBO:0053219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galectin like","termid":"PBO:0053219"}


id: PBO:0075568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spindle and centriole associated protein 1","termid":"PBO:0075568"}


id: PR:Q92350
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pcd1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q92350"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nudix hydrolase C6G9.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6G9.05","synonyms":[{"name":"Spom972h-pcd1","type":"exact"}],"termid":"PR:Q92350"}


id: PBO:0017459
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-hyperparasite_of","termid":"PBO:0017459"}


id: PBO:0088512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ING family zinc finger, PHD-type","termid":"PBO:0088512"}


id: PBO:0083628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E3 ubiquitin ligase targeting centromere-binding protein Cse4p; mediates polyubiquitination and degradation of histone H3 variant Cse4p; ubiquitination of Cse4p may be antagonized by Scm3p; interacts with the FACT complex preventing mislocalization of Cse4p to euchromatin independent of Slx5p; formyl-methionine/N-recognin component of N-end rule pathway mediating destruction of formylated cytosolic proteins elevated in response to starvation or stationary phase entry","termid":"PBO:0083628"}


id: GO:0005964
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An enzyme complex that catalyzes the phosphorylation of phosphorylase b to form phosphorylase a.","definition_xrefs":["PMID:1370475"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine/threonine protein kinase complex","termid":"GO:1902554"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"phosphorylase kinase complex","termid":"GO:0005964"}


id: GO:1990242
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A protein complex involved in the innate immune response.","definition_xrefs":["GOC:bhm","PMID:23910378"],"gene_count":0,"genotype_count":0,"name":"obsolete innate immune response complex (obsolete GO:1990242)","synonyms":[{"name":"innate immune response complex","type":"exact"}],"termid":"GO:1990242"}


id: SO:0001932
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 5' end.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"restriction_enzyme_single_strand_overhang","termid":"SO:0001695"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"restriction_enzyme_five_prime_single_strand_overhang","synonyms":[{"name":"restriction enzyme five prime single strand overhang","type":"exact"}],"termid":"SO:0001932"}


id: PBO:0069952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1245, pseudogene","termid":"PBO:0069952"}


id: GO:1905790
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mechanosensory behavior.","definition_xrefs":["GOC:TermGenie","PMID:8692859","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to external stimulus","termid":"GO:0032101"},{"relation_name":"is_a","term_name":"regulation of behavior","termid":"GO:0050795"},{"relation_name":"regulates","term_name":"mechanosensory behavior","termid":"GO:0007638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mechanosensory behavior","synonyms":[{"name":"regulation of behavioral response to mechanical stimulus","type":"exact"},{"name":"regulation of behavioural response to mechanical stimulus","type":"exact"},{"name":"regulation of mechanosensory behaviour","type":"exact"}],"termid":"GO:1905790"}


id: PBO:0089217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hrd1 ubiquitin ligase complex SEL1/TPR repeat subunit","termid":"PBO:0089217"}


id: PBO:0013783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase activating protein Spa2 (predicted)","termid":"PBO:0013783"}


id: PBO:0027153
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_vacuolar_histidine_level","termid":"PBO:0027153"}


id: GO:0051462
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the regulated release of cortisol from a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glucocorticoid secretion","termid":"GO:2000849"},{"relation_name":"regulates","term_name":"cortisol secretion","termid":"GO:0043400"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0006810"],"is_obsolete":false,"name":"regulation of cortisol secretion","termid":"GO:0051462"}


id: PBO:0063237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin alpha 2","termid":"PBO:0063237"}


id: PBO:0084571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Membrane protein involved in zinc ion homeostasis; member of the four-protein IZH family; transcription is regulated directly by Zap1p, expression induced by zinc deficiency and fatty acids; deletion increases sensitivity to elevated zinc; IZH1 has a paralog, IZH4, that arose from the whole genome duplication","termid":"PBO:0084571"}


id: PBO:0058246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4534","termid":"PBO:0058246"}


id: GO:0071806
data:
  {"annotated_genes":["SJAG_03396","SJAG_00564","SJAG_02997","SJAG_00373","SJAG_01442","SJAG_02077","SJAG_02917","SJAG_02588","SJAG_04014","SJAG_01854","SJAG_01615","SJAG_02797","SJAG_00175","SJAG_04336","SJAG_01165","SJAG_00196","SJAG_01879","SJAG_03560","SJAG_01597","SJAG_01560","SJAG_02208","SJAG_01120","SJAG_03440","SJAG_04129","SJAG_04996","SJAG_03358","SJAG_03415","SJAG_05315","SJAG_02330","SJAG_01640","SJAG_00702","SJAG_02354","SJAG_03502","SJAG_00064","SJAG_04432","SJAG_05259","SJAG_04218","SJAG_02693","SJAG_03684","SJAG_00326","SJAG_00687","SJAG_00891","SJAG_01684","SJAG_00959","SJAG_03324","SJAG_03515","SJAG_02619","SJAG_02034"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[56925,60625,65840],"is_not":false,"summary":null,"term":"GO:0071806"},{"annotations":[102204,86676,105384,104353,106448,94123,93413],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031204"},{"annotations":[94559,84452,105810],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045041"},{"annotations":[84453,92957,101219,85636,102211,103553,105923,95298,111269,95483,103636,107841,95593,90589,103613,98746,86985,113268,99340,96370,112818],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030150"},{"annotations":[86323,62828,94302,106091,86526,101273,107429,92542],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016558"},{"annotations":[107893,99149,93030],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0016560"},{"annotations":[97356,113328],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0016562"},{"annotations":[111971,98634,104355,102206,105386,94125],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006616"}]},"cv_name":"biological_process","definition":"The process in which a protein is transported across a membrane.","definition_xrefs":["GOC:vw","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein transport","termid":"GO:0015031"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":48,"genes_by_uniquename":{"SJAG_00064":null,"SJAG_00175":null,"SJAG_00196":null,"SJAG_00326":null,"SJAG_00373":null,"SJAG_00564":null,"SJAG_00687":null,"SJAG_00702":null,"SJAG_00891":null,"SJAG_00959":null,"SJAG_01120":null,"SJAG_01165":null,"SJAG_01442":null,"SJAG_01560":null,"SJAG_01597":null,"SJAG_01615":null,"SJAG_01640":null,"SJAG_01684":null,"SJAG_01854":null,"SJAG_01879":null,"SJAG_02034":null,"SJAG_02077":null,"SJAG_02208":null,"SJAG_02330":null,"SJAG_02354":null,"SJAG_02588":null,"SJAG_02619":null,"SJAG_02693":null,"SJAG_02797":null,"SJAG_02917":null,"SJAG_02997":null,"SJAG_03324":null,"SJAG_03358":null,"SJAG_03396":null,"SJAG_03415":null,"SJAG_03440":null,"SJAG_03502":null,"SJAG_03515":null,"SJAG_03560":null,"SJAG_03684":null,"SJAG_04014":null,"SJAG_04129":null,"SJAG_04218":null,"SJAG_04336":null,"SJAG_04432":null,"SJAG_04996":null,"SJAG_05259":null,"SJAG_05315":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"protein transmembrane transport","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"protein membrane transport","type":"exact"}],"termid":"GO:0071806","terms_by_termid":{"GO:0006616":null,"GO:0016558":null,"GO:0016560":null,"GO:0016562":null,"GO:0030150":null,"GO:0031204":null,"GO:0045041":null,"GO:0071806":null}}


id: PBO:0040140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"achaete-scute family bHLH transcription factor 3","termid":"PBO:0040140"}


id: SO:0001975
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A restriction enzyme recognition site that, when cleaved, results in 5 prime overhangs.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sticky_end_restriction_enzyme_cleavage_site","termid":"SO:0001692"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_prime_sticky_end_restriction_enzyme_cleavage_site","synonyms":[{"name":"five prime sticky end restriction enzyme cleavage site","type":"exact"}],"termid":"SO:0001975"}


id: GO:0090706
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regionalization process in which information that determines the correct position at which plant organ primordia are formed is generated and perceived resulting in correct positioning of the new plant organ.","definition_xrefs":["GOC:tb","PMID:9611175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regionalization","termid":"GO:0003002"},{"relation_name":"part_of","term_name":"plant organ morphogenesis","termid":"GO:1905392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of plant organ position","termid":"GO:0090706"}


id: PBO:0051622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ILF3 divergent transcript","termid":"PBO:0051622"}


id: MOD:01466
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["PubMed:15939799","Unimod:302#K"],"direct_ancestors":[{"relation_name":"is_a","term_name":"menadione quinone derivative","termid":"MOD:00621"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"menadione quinone derivative - site C","synonyms":[{"name":"Menadione","type":"related"},{"name":"Menadione quinone derivative","type":"related"}],"termid":"MOD:01466"}


id: PR:Q9UT49
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cid13 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UT49"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A) RNA polymerase cid13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC821.04c","synonyms":[{"name":"PAP (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cid13","type":"exact"},{"name":"caffeine-induced death protein 13 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"polynucleotide adenylyltransferase cid13 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UT49"}


id: GO:1901933
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of bicyclogermacrene.","definition_xrefs":["GOC:TermGenie","PMID:22867794"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpene catabolic process","termid":"GO:0051763"},{"relation_name":"is_a","term_name":"bicyclogermacrene metabolic process","termid":"GO:1901932"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"bicyclogermacrene catabolic process","synonyms":[{"name":"bicyclogermacrene breakdown","type":"exact"},{"name":"bicyclogermacrene catabolism","type":"exact"},{"name":"bicyclogermacrene degradation","type":"exact"}],"termid":"GO:1901933"}


id: PBO:0083787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein involved in rRNA and snoRNA maturation; competes with TLC1 RNA for binding to Est2p, suggesting a role in negative regulation of telomerase; human homolog inhibits telomerase; contains a G-patch RNA interacting domain","termid":"PBO:0083787"}


id: GO:0090515
data:
  {"annotated_genes":["SJAG_03256"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99893],"is_not":false,"summary":null,"term":"GO:0090515"}]},"cv_name":"biological_process","definition":"The directed movement of L-glutamate into the vacuole across the vacuolar membrane.","definition_xrefs":["GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-glutamate transmembrane transport","termid":"GO:0015813"},{"relation_name":"is_a","term_name":"glutamate transmembrane import into vacuole","termid":"GO:0090454"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03256":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"L-glutamate transmembrane import into vacuole","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0090515","terms_by_termid":{"GO:0090515":null}}


id: PBO:0017467
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-functionally_related_to","termid":"PBO:0017467"}


id: GO:0046690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tellurium ion stimulus.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to tellurium ion","synonyms":[{"name":"response to tellurium","type":"exact"},{"name":"tellurium sensitivity/resistance","type":"related"}],"termid":"GO:0046690"}


id: PBO:0076299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spectrin repeat containing nuclear envelope family member 3","termid":"PBO:0076299"}


id: PBO:0048998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glypican 6","termid":"PBO:0048998"}


id: PR:O94323
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ectonucleotide pyrophosphatase/phosphodiesterase family member 5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized pyrophosphatase/phosphodiesterase C725.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC725.05c","secondary_identifiers":["UniProtKB:O94323"],"synonyms":[{"name":"Spom972h-ENPP5","type":"exact"}],"termid":"PR:O94323"}


id: PBO:0090887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic serine-tRNA ligase Srs1","termid":"PBO:0090887"}


id: PBO:0034452
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_degradation_during_mitosis","termid":"PBO:0034452"}


id: FYPO:0000194
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A stress response phenotype observed in the vegetative growth phase of the life cycle in which a cellular response to hydrogen peroxide is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular response to oxidative stress during vegetative growth","termid":"FYPO:0001340"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000298"],"is_obsolete":false,"name":"abnormal cellular response to hydrogen peroxide","synonyms":[{"name":"abnormal cellular response to H2O2","type":"exact"},{"name":"abnormal cellular response to hydrogen peroxide during mitotic cell cycle","type":"related"},{"name":"abnormal cellular response to hydrogen peroxide during vegetative growth","type":"exact"}],"termid":"FYPO:0000194"}


id: GO:1904110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of plus-end directed microfilament motor activity.","definition_xrefs":["GOC:kmv","GO_REF:0000059","PMID:25717181","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of plus-end directed microfilament motor activity (obsolete GO:1904110)","synonyms":[{"name":"regulation of barbed-end directed actin-filament motor activity","type":"exact"},{"name":"regulation of plus-end directed actin filament motor activity","type":"related"},{"name":"regulation of plus-end directed actin-filament motor activity","type":"exact"}],"termid":"GO:1904110"}


id: PR:O60116
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ribokinase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04035","PANTHER:PTHR10584:SF29","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribokinase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16G5.02c","secondary_identifiers":["UniProtKB:O60116"],"synonyms":[{"name":"Spom972h-RBKS","type":"exact"}],"termid":"PR:O60116"}


id: PR:P78937
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sua1 gene.","definition_xrefs":["UniProtKB:P78937","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfate adenylyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC27.08c","synonyms":[{"name":"ATP-sulfurylase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SAT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-sua1","type":"exact"},{"name":"sulfate adenylate transferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P78937"}


id: FYPO:0006994
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing at centromere outer repeat regions is increased at the left outer repeat region (otr1L) of the centromere.","definition_xrefs":["PMID:26518661","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased chromatin silencing at centromere outer repeat","termid":"FYPO:0006299"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0006551","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased chromatin silencing at centromere otr1L","synonyms":[{"name":"increased centromere outer repeat region chromatin silencing at otr1L","type":"exact"},{"name":"increased chromatin silencing at centromere otr1L during mitotic cell cycle","type":"related"},{"name":"increased chromatin silencing at centromere otr1L during vegetative growth","type":"exact"},{"name":"increased chromatin silencing at centromere otr1L region","type":"exact"},{"name":"increased chromatin silencing at centromeric otr1L","type":"exact"},{"name":"increased chromatin silencing at pericentric region otr1L","type":"related"},{"name":"increased chromatin silencing at pericentromeric region otr1L","type":"related"},{"name":"increased heterochromatic silencing at centromere otr1L","type":"exact"},{"name":"increased heterochromatin silencing at centromere otr1L","type":"exact"}],"termid":"FYPO:0006994"}


id: GO:0015537
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: xanthosine(out) + H+(out) = xanthosine(in) + H+(in).","definition_xrefs":["TC:2.A.1.10.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside:proton symporter activity","termid":"GO:0015506"},{"relation_name":"is_a","term_name":"xanthosine transmembrane transporter activity","termid":"GO:0015553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"xanthosine:proton symporter activity","synonyms":[{"name":"xanthosine permease activity","type":"related"},{"name":"xanthosine:hydrogen ion symporter activity","type":"exact"}],"termid":"GO:0015537"}


id: GO:0051618
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of histamine into a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of neurotransmitter uptake","termid":"GO:0051582"},{"relation_name":"is_a","term_name":"regulation of histamine uptake","termid":"GO:0051616"},{"relation_name":"positively_regulates","term_name":"histamine uptake","termid":"GO:0051615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of histamine uptake","synonyms":[{"name":"activation of histamine uptake","type":"narrow"},{"name":"positive regulation of histamine import","type":"exact"},{"name":"stimulation of histamine uptake","type":"narrow"},{"name":"up regulation of histamine uptake","type":"exact"},{"name":"up-regulation of histamine uptake","type":"exact"},{"name":"upregulation of histamine uptake","type":"exact"}],"termid":"GO:0051618"}


id: PR:O94313
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A carbamoyl-phosphate synthase [ammonia], mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03965"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbamoyl-phosphate synthase arginine-specific large chain (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC215.08c","secondary_identifiers":["UniProtKB:O94313"],"synonyms":[{"name":"Spom972h-CPS1","type":"exact"},{"name":"arginine-specific carbamoyl-phosphate synthetase, ammonia chain (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94313"}


id: GO:0003976
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + lysosomal-enzyme D-mannose = UMP + lysosomal-enzyme N-acetyl-D-glucosaminyl-phospho-D-mannose.","definition_xrefs":["EC:2.7.8.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016780"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016780"],"is_obsolete":false,"name":"UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity","secondary_identifiers":["MetaCyc:2.7.8.17-RXN","RHEA:13581"],"synonyms":[{"name":"N-acetylglucosaminyl phosphotransferase activity","type":"related"},{"name":"N-acetylglucosaminylphosphotransferase activity","type":"related"},{"name":"UDP-GlcNAc:glycoprotein N-acetylglucosamine-1-phosphotransferase activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:lysosomal-enzyme N-acetylglucosaminephosphotransferase activity","type":"related"},{"name":"UDP-N-acetylglucosamine:glycoprotein N-acetylglucosamine-1-phosphotransferase activity","type":"related"},{"name":"UDP-N-acetylglucosamine:glycoprotein N-acetylglucosaminyl-1-phosphotransferase activity","type":"related"},{"name":"UDP-N-acetylglucosamine:lysosomal enzyme N-acetylglucosamine-1-phosphotransferase activity","type":"related"},{"name":"lysosomal enzyme precursor acetylglucosamine-1-phosphotransferase activity","type":"related"}],"termid":"GO:0003976"}


id: MOD:00812
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to an O-fucosylserine.","definition_xrefs":["RESID:AA0404","Unimod:295#S","PubMed:11067851","PubMed:1517205","PubMed:3311742","PubMed:10734111","PubMed:12096136","PubMed:15189151","PubMed:3578767","PubMed:11344537","PubMed:1904059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycosyl-L-serine","termid":"MOD:00002"},{"relation_name":"is_a","term_name":"fucosylated","termid":"MOD:00614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"O-fucosyl-L-serine","synonyms":[{"name":"(2S)-2-amino-3-(6-deoxy-alpha-D-galactopyranosyloxy)propanoic acid","type":"exact"},{"name":"CARBOHYD O-linked (Fuc)","type":"exact"},{"name":"CARBOHYD O-linked (Fuc) serine","type":"exact"},{"name":"CARBOHYD O-linked (dHex)","type":"exact"},{"name":"Fucose","type":"related"},{"name":"O-fucosyl-L-serine","type":"exact"},{"name":"O-glycosylserine","type":"exact"},{"name":"O3-fucosylserine","type":"exact"},{"name":"OFucSer","type":"exact"},{"name":"dHex","type":"related"}],"termid":"MOD:00812"}


id: GO:0047459
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-3-aminobutanoyl-CoA = crotonoyl-CoA + NH4.","definition_xrefs":["RHEA:10056","EC:4.3.1.14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ammonia-lyase activity","termid":"GO:0016841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"3-aminobutyryl-CoA ammonia-lyase activity","secondary_identifiers":["KEGG_REACTION:R03030","MetaCyc:4.3.1.14-RXN"],"synonyms":[{"name":"L-3-aminobutyryl-CoA ammonia-lyase (crotonoyl-CoA-forming)","type":"related"},{"name":"L-3-aminobutyryl-CoA ammonia-lyase activity","type":"related"},{"name":"L-3-aminobutyryl-CoA deaminase activity","type":"related"}],"termid":"GO:0047459"}


id: PBO:0003303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme Ubc4","termid":"PBO:0003303"}


id: FYPO:0006133
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phytosphingosine measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular phytosphingosine level","synonyms":[{"name":"increased cellular phytosphingosine level during mitotic cell cycle","type":"related"},{"name":"increased cellular phytosphingosine level during vegetative growth","type":"exact"},{"name":"increased phytosphingosine accumulation","type":"related"}],"termid":"FYPO:0006133"}


id: PBO:0066520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"repulsive guidance molecule BMP co-receptor a","termid":"PBO:0066520"}


id: PBO:0004231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bouquet formation protein Bqt4","termid":"PBO:0004231"}


id: PBO:0027700
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_centromeric_DNA_separation","termid":"PBO:0027700"}


id: PR:O13896
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA-directed RNA polymerase III subunit RPC10 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11239:SF2","PRO:DNx","OMA:SCHPO00468"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase III subunit RPC10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22A12.05","secondary_identifiers":["UniProtKB:O13896"],"synonyms":[{"name":"DNA-directed RNA polymerases III 12.5 kDa polypeptide (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNA polymerase III subunit C10 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNA polymerase III subunit C11 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-POLR3K","type":"exact"}],"termid":"PR:O13896"}


id: PR:O94393
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 26S proteasome non-ATPase regulatory subunit 9 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12651:SF0","OMA:SCHPO02190","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26S proteasome regulatory subunit p27 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2H10.02c","secondary_identifiers":["UniProtKB:O94393"],"synonyms":[{"name":"Spom972h-PSMD9","type":"exact"}],"termid":"PR:O94393"}


id: MOD:01726
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a threonine residue with the Proteome Sciences TMT6plex-126 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TMT6plex reporter+balance reagent O-acylated residue","termid":"MOD:01719"},{"relation_name":"is_a","term_name":"TMT6plex-126 reporter+balance reagent acylated residue","termid":"MOD:01720"},{"relation_name":"is_a","term_name":"O3-acylated L-threonine","termid":"MOD:02004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"TMT6plex-126 reporter+balance reagent O3-acylated threonine","synonyms":[{"name":"3-[(2,6-dimethylpiperidin-1-yl)acetyl]amino)propanoyl","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"}],"termid":"MOD:01726"}


id: GO:0120126
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of copper ion.","definition_xrefs":["PMID:24024382","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to starvation","termid":"GO:0042594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to copper ion starvation","termid":"GO:0120126"}


id: PBO:0053010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LAMP5 antisense RNA 1","termid":"PBO:0053010"}


id: FYPO:0002850
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype characterized by normal cell morphology (i.e. size, shape, and structure) when the cell population has been in stationary phase and is then placed in conditions that allow recovery.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell morphology","termid":"FYPO:0001315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal cell morphology during recovery from stationary phase","termid":"FYPO:0002850"}


id: PBO:0017712
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by A. thaliana GRF2","termid":"PBO:0017712"}


id: PBO:0039403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase promoting complex subunit 4","termid":"PBO:0039403"}


id: PBO:0064216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase C beta 2","termid":"PBO:0064216"}


id: GO:0090708
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the polarity of a plant organ axis is specified.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of axis polarity","termid":"GO:0065001"},{"relation_name":"part_of","term_name":"plant organ morphogenesis","termid":"GO:1905392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of plant organ axis polarity","termid":"GO:0090708"}


id: PBO:0051698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol polyphosphate-1-phosphatase","termid":"PBO:0051698"}


id: SO:0000234
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mature_transcript","termid":"SO:0000233"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA","secondary_identifiers":["http://www.gencodegenes.org/gencode_biotypes.html","http://en.wikipedia.org/wiki/MRNA"],"synonyms":[{"name":"INSDC_feature:mRNA","type":"exact"},{"name":"messenger RNA","type":"exact"},{"name":"protein_coding_transcript","type":"exact"}],"termid":"SO:0000234"}


id: FYPO:0003685
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain fewer U2/U5/U6 snRNP complexes than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of macromolecular complex during vegetative growth","termid":"FYPO:0003684"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased U2/U5/U6 snRNP complex level","synonyms":[{"name":"U2/U5/U6 snRNP complex present at decreased level","type":"exact"},{"name":"decreased U2-type post-mRNA release spliceosomal complex level","type":"exact"},{"name":"decreased U2/U5/U6 snRNP complex level during mitotic cell cycle","type":"related"},{"name":"decreased U2/U5/U6 snRNP complex level during vegetative growth","type":"exact"},{"name":"decreased level of U2/U5/U6 snRNP complexes","type":"related"},{"name":"reduced U2/U5/U6 snRNP complex level","type":"exact"}],"termid":"FYPO:0003685"}


id: GO:0033282
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric protein complex of protein C inhibitor (SERPINA5) and acrosin; formation of the complex inhibits the protease activity of acrosin.","definition_xrefs":["GOC:pr","PMID:7521127","PMID:11120760"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine protease inhibitor complex","termid":"GO:0097180"},{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"part_of","term_name":"acrosomal membrane","termid":"GO:0002080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"protein C inhibitor-acrosin complex","synonyms":[{"name":"PCI-ACR complex","type":"exact"},{"name":"PCI-acrosin complex","type":"exact"},{"name":"SERPINA5-acrosin complex","type":"exact"},{"name":"plasma serine protease inhibitor-acrosin complex","type":"exact"},{"name":"serpin A5-acrosin complex","type":"exact"}],"termid":"GO:0033282"}


