# terms

id: PBO:0044939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"24-dehydrocholesterol reductase","termid":"PBO:0044939"}


id: FYPO:0003086
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of chromatin binding by a gene product (usually a protein) in a mutant is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein complex binding","termid":"FYPO:0005232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000702","FYPO:0000652"],"is_obsolete":false,"name":"normal chromatin binding","termid":"FYPO:0003086"}


id: GO:0097159
data:
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id: PR:Q9C0X7
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAPB8E5.08 gene.","definition_xrefs":["UniProtKB:Q9C0X7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein PB8E5.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB8E5.08","synonyms":[{"name":"Spom972h-SPAPB8E5.08","type":"exact"}],"termid":"PR:Q9C0X7"}


id: PBO:0088585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retromer complex arrestin related endocytic adaptor ubunit Vps26","termid":"PBO:0088585"}


id: PBO:0050973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon omega 1 pseudogene 18","termid":"PBO:0050973"}


id: PBO:0052149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium voltage-gated channel interacting protein 4","termid":"PBO:0052149"}


id: PR:Q10411
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- spo15 gene.","definition_xrefs":["UniProtKB:Q10411","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sporulation-specific protein 15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F3.06c","synonyms":[{"name":"Spom972h-spo15","type":"exact"}],"termid":"PR:Q10411"}


id: PBO:0082088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, synthesizes PRPP; which is required for nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes; PRS4 has a paralog, PRS2, that arose from the whole genome duplication; a missense mutation in the conserved residue R196 of its human homolog PRPS1 is pathogenic","termid":"PBO:0082088"}


id: PBO:0090182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial TOM complex subunit Tom7","termid":"PBO:0090182"}


id: GO:1903060
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein lipidation.","definition_xrefs":["PMID:21909394","GO_REF:0000058","GOC:rph","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of macromolecule biosynthetic process","termid":"GO:0010558"},{"relation_name":"is_a","term_name":"negative regulation of protein modification process","termid":"GO:0031400"},{"relation_name":"is_a","term_name":"negative regulation of lipoprotein metabolic process","termid":"GO:0050748"},{"relation_name":"is_a","term_name":"regulation of protein lipidation","termid":"GO:1903059"},{"relation_name":"negatively_regulates","term_name":"protein lipidation","termid":"GO:0006497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein lipidation","synonyms":[{"name":"down regulation of lipid:protein modification","type":"exact"},{"name":"down regulation of protein amino acid lipidation","type":"exact"},{"name":"down regulation of protein lipidation","type":"exact"},{"name":"down-regulation of lipid:protein modification","type":"exact"},{"name":"down-regulation of protein amino acid lipidation","type":"exact"},{"name":"down-regulation of protein lipidation","type":"exact"},{"name":"downregulation of lipid:protein modification","type":"exact"},{"name":"downregulation of protein amino acid lipidation","type":"exact"},{"name":"downregulation of protein lipidation","type":"exact"},{"name":"inhibition of lipid:protein modification","type":"narrow"},{"name":"inhibition of protein amino acid lipidation","type":"narrow"},{"name":"inhibition of protein lipidation","type":"narrow"},{"name":"negative regulation of lipid:protein modification","type":"exact"},{"name":"negative regulation of protein amino acid lipidation","type":"exact"}],"termid":"GO:1903060"}


id: PBO:0015234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3 involved in sporulation Dbl4","termid":"PBO:0015234"}


id: GO:0072148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into an epithelial cell.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate commitment","termid":"GO:0045165"},{"relation_name":"part_of","term_name":"epithelial cell differentiation","termid":"GO:0030855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial cell fate commitment","termid":"GO:0072148"}


id: PBO:0047950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(17)(q23.1)","termid":"PBO:0047950"}


id: GO:0042816
data:
  {"annotated_genes":["SJAG_00691","SJAG_00707","SJAG_01543","SJAG_00283","SJAG_01881","SJAG_01383","SJAG_00252","SJAG_05230"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95079],"is_not":false,"summary":null,"term":"GO:0042816"},{"annotations":[88886],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036001"},{"annotations":[95742,111730],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009443"},{"annotations":[110433,96923],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042821"},{"annotations":[83843,91570,63440],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042823"},{"annotations":[107869],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010144"},{"annotations":[83844],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042818"},{"annotations":[83845,91571],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008615"},{"annotations":[88887],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008614"},{"annotations":[96924],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042820"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving any of the vitamin B6 compounds: pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.","definition_xrefs":["PMID:30671974","PMID:30037155","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"water-soluble vitamin metabolic process","termid":"GO:0006767"},{"relation_name":"is_a","term_name":"pyridine-containing compound metabolic process","termid":"GO:0072524"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00252":null,"SJAG_00283":null,"SJAG_00691":null,"SJAG_00707":null,"SJAG_01383":null,"SJAG_01543":null,"SJAG_01881":null,"SJAG_05230":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006766","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"vitamin B6 metabolic process","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"vitamin B6 metabolism","type":"exact"}],"termid":"GO:0042816","terms_by_termid":{"GO:0008614":null,"GO:0008615":null,"GO:0009443":null,"GO:0010144":null,"GO:0036001":null,"GO:0042816":null,"GO:0042818":null,"GO:0042820":null,"GO:0042821":null,"GO:0042823":null}}


id: PATO:0000011
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A time quality inhering in a bearer by virtue of how long the bearer has existed.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"time","termid":"PATO:0000165"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"age","termid":"PATO:0000011"}


id: PBO:0081971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger RANBP2-type containing 3","termid":"PBO:0081971"}


id: PBO:0065839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB9A, member RAS oncogene family pseudogene 4","termid":"PBO:0065839"}


id: PR:Q9C0Z4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAPB21F2.02 gene.","definition_xrefs":["UniProtKB:Q9C0Z4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein dopey (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB21F2.02","synonyms":[{"name":"Spom972h-SPAPB21F2.02","type":"exact"}],"termid":"PR:Q9C0Z4"}


id: PBO:0005526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin Spn6 (predicted)","termid":"PBO:0005526"}


id: GO:0031633
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A chromatophore containing yellow pigment.","definition_xrefs":["ISBN:0395825172"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane-derived chromatophore","termid":"GO:0042716"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"xanthophore","termid":"GO:0031633"}


id: PBO:0003825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prospore membrane protein Mcp4/Mug101","termid":"PBO:0003825"}


id: PBO:0064380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PMS1 homolog 2, mismatch repair system component pseudogene 2","termid":"PBO:0064380"}


id: PBO:0091851
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Defective In Sister chromatid joining","termid":"PBO:0091851"}


id: PBO:0089895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane iron/zinc ion transmembrane transporter","termid":"PBO:0089895"}


id: PBO:0052020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"junction mediating and regulatory protein, p53 cofactor","termid":"PBO:0052020"}


id: GO:0036110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of inositol.","definition_xrefs":["PMID:19606215","GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to starvation","termid":"GO:0009267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to inositol starvation","termid":"GO:0036110"}


id: PBO:0062316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily B member 1","termid":"PBO:0062316"}


id: GO:0004023
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+; can proceed in the absence of a metal ion.","definition_xrefs":["GOC:mah","EC:1.1.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol dehydrogenase (NAD+) activity","termid":"GO:0004022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"alcohol dehydrogenase (NAD+) activity, metal ion-independent","synonyms":[{"name":"alcohol dehydrogenase activity, metal ion-independent","type":"broad"}],"termid":"GO:0004023"}


id: PBO:0085375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PINc domain endonuclease; required for early cleavage of 35S pre-rRNA and maturation of 18S rRNA; component of the SSU (small subunit) processome involved in 40S ribosomal subunit biogenesis; copurifies with Faf1p","termid":"PBO:0085375"}


id: PBO:0000901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPI-coated vesicle associated protein (predicted)","termid":"PBO:0000901"}


id: FYPO:0002556
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the medial cortex of a cell is decreased, and the protein is instead detected distributed throughout the cell cortex of half of the cell nearer the non-growing end. There may be little or no protein detected at the medial cortex.","definition_xrefs":["PomBase:al","PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to medial cortex, with protein distributed in cell cortex, during vegetative growth","termid":"FYPO:0006638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"decreased protein localization to medial cortex, with protein distributed in cell cortex near non-growing end, during vegetative growth","synonyms":[{"name":"abolished protein localization to medial cortex during vegetative growth, with protein distributed in cortex of non-growing half of cell","type":"narrow"},{"name":"decreased protein localisation to medial cortex during vegetative growth, with protein distributed in cell cortex near non-growing end","type":"exact"},{"name":"decreased protein localization to medial cortex during vegetative growth, with protein distributed in cell cortex near non-growing end","type":"exact"},{"name":"decreased protein localization to medial cortex during vegetative growth, with protein distributed in cell cortex near non-growing end, during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to medial cortex during vegetative growth, with protein distributed in cortex of non-growing half of cell","type":"exact"},{"name":"decreased protein localization to medial ring, with protein distributed in cell cortex near non-growing end, during vegetative growth","type":"exact"},{"name":"reduced protein localization to medial cortex during vegetative growth, with protein distributed in cell cortex near non-growing end","type":"exact"}],"termid":"FYPO:0002556"}


id: GO:0045637
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of myeloid cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hemopoiesis","termid":"GO:1903706"},{"relation_name":"regulates","term_name":"myeloid cell differentiation","termid":"GO:0030099"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of myeloid cell differentiation","termid":"GO:0045637"}


id: GO:0016937
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a short-chain 2,3-saturated fatty acyl-CoA + H+ + oxidized [electron-transfer flavoprotein] = a short-chain (2E)-enoyl-CoA + reduced [electron-transfer flavoprotein]. A short-chain fatty acid has an aliphatic tail containing fewer than 6 carbons.","definition_xrefs":["RHEA:47196"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyl-CoA dehydrogenase activity","termid":"GO:0003995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"short-chain fatty acyl-CoA dehydrogenase activity","secondary_identifiers":["EC:1.3.8.1"],"synonyms":[{"name":"butanoyl-CoA dehydrogenase","type":"narrow"},{"name":"butyryl dehydrogenase","type":"narrow"},{"name":"short-chain acyl CoA dehydrogenase","type":"exact"},{"name":"short-chain-acyl-CoA dehydrogenase activity","type":"exact"},{"name":"unsaturated acyl-CoA reductase","type":"broad"}],"termid":"GO:0016937"}


id: PBO:0045950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EGF like domain multiple 6","termid":"PBO:0045950"}


id: GO:0019617
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of protocatechuate, the anion of 3,4-dihydroxybenzoic acid, to yield oxaloacetate and pyruvate.","definition_xrefs":["MetaCyc:P184-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyruvate metabolic process","termid":"GO:0006090"},{"relation_name":"is_a","term_name":"oxaloacetate metabolic process","termid":"GO:0006107"},{"relation_name":"is_a","term_name":"3,4-dihydroxybenzoate catabolic process","termid":"GO:0019619"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"protocatechuate catabolic process, meta-cleavage","synonyms":[{"name":"3,4-dihydroxybenzoate catabolic process, meta-cleavage","type":"related"},{"name":"protocatechuate breakdown, meta-cleavage","type":"exact"},{"name":"protocatechuate catabolic process to oxaloacetate and pyruvate","type":"exact"},{"name":"protocatechuate degradation, meta-cleavage","type":"exact"}],"termid":"GO:0019617"}


id: PBO:0054226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1608","termid":"PBO:0054226"}


id: PBO:0030981
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K9_trimethylation_at_centromere","termid":"PBO:0030981"}


id: GO:0102614
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: germacra-1(10),4,11(13)-trien-12-oate + NADPH + O2 + H+ = 8beta-hydroxy-germacra-1(10),4,11(13)-trien-12-oate + NADP + H2O.","definition_xrefs":["EC:1.14.13.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"germacrene A acid 8beta-hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-15460"],"termid":"GO:0102614"}


id: PBO:0058146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4442","termid":"PBO:0058146"}


id: GO:0061335
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The growth of an epithelial cell dependent on cycles of endoreplication, where growth contributes to the shaping of the Malpighian tubule.","definition_xrefs":["GOC:dph","GOC:mtg_kidney_jan10","PMID:19783135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental cell growth","termid":"GO:0048588"},{"relation_name":"is_a","term_name":"developmental growth involved in morphogenesis","termid":"GO:0060560"},{"relation_name":"part_of","term_name":"Malpighian tubule morphogenesis","termid":"GO:0007443"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell growth involved in Malpighian tubule morphogenesis","termid":"GO:0061335"}


id: PBO:0087132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding protein involved in asymmetric localization of ASH1 mRNA; represses translation of ASH1 mRNA, an effect reversed by Yck1p-dependent phosphoryation; regulates telomere position effect and length; similarity to hnRNP-K","termid":"PBO:0087132"}


id: PBO:0039052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"angiogenic factor with G-patch and FHA domains 1 pseudogene 1","termid":"PBO:0039052"}


id: PBO:0070330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY4 pseudogene 2","termid":"PBO:0070330"}


id: PBO:0039214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldo-keto reductase family 1 member C5, pseudogene","termid":"PBO:0039214"}


id: PBO:0041137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"betacellulin","termid":"PBO:0041137"}


id: PBO:0059153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGUK p55 scaffold protein 7","termid":"PBO:0059153"}


id: PATO:0000148
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000148 body temperature (obsolete PATO:0000148)","termid":"PATO:0000148"}


id: PBO:0053267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukocyte immunoglobulin like receptor A1","termid":"PBO:0053267"}


id: PBO:0075829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal sequence receptor subunit 4","termid":"PBO:0075829"}


id: PBO:0050202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 19","termid":"PBO:0050202"}


id: PBO:0042012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 69","termid":"PBO:0042012"}


id: PBO:0079816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin like with PHD and ring finger domains 2 pseudogene 1","termid":"PBO:0079816"}


id: GO:0018219
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acetylation of peptidyl-cysteine to form peptidyl-S-acetyl-L-cysteine.","definition_xrefs":["RESID:AA0056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-cysteine acetylation","termid":"GO:0018533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-cysteine S-acetylation","termid":"GO:0018219"}


id: FYPO:0005737
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which prospore membrane formation begins later than normal.","definition_xrefs":["PomBase:mah","PMID:27630265"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal prospore membrane formation","termid":"FYPO:0001914"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000121"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0000121"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000121","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of prospore membrane formation","synonyms":[{"name":"delayed onset of ascospore-type prospore membrane assembly","type":"exact"},{"name":"delayed onset of forespore membrane formation","type":"exact"},{"name":"delayed prospore membrane formation","type":"exact"}],"termid":"FYPO:0005737"}


id: PBO:0088091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP-glycosyltransferase subunit of the GPI-GnT complex; UDP-GlcNAc-binding and catalytic subunit of the enzyme that mediates the first step in glycosylphosphatidylinositol (GPI) biosynthesis, mutations cause defects in transcription and in biogenesis of cell wall proteins","termid":"PBO:0088091"}


id: PBO:0080657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WAP four-disulfide core domain 1","termid":"PBO:0080657"}


id: PBO:0011098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S13","termid":"PBO:0011098"}


id: GO:0003234
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of the bulbus arteriosus from unspecified parts. The bulbus arteriosus is an elastic chamber of the heart.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac chamber formation","termid":"GO:0003207"},{"relation_name":"part_of","term_name":"bulbus arteriosus morphogenesis","termid":"GO:0003233"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bulbus arteriosus formation","termid":"GO:0003234"}


id: GO:1901347
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of secondary cell wall biogenesis.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell wall organization or biogenesis","termid":"GO:1903339"},{"relation_name":"is_a","term_name":"regulation of secondary cell wall biogenesis","termid":"GO:2000652"},{"relation_name":"negatively_regulates","term_name":"plant-type secondary cell wall biogenesis","termid":"GO:0009834"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0071554"},{"rel_name":"negatively_regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0071554"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0071554"],"is_obsolete":false,"name":"negative regulation of secondary cell wall biogenesis","synonyms":[{"name":"down regulation of cellulose and pectin-containing secondary cell wall biogenesis","type":"exact"},{"name":"down regulation of plant-type secondary cell wall biogenesis","type":"exact"},{"name":"down regulation of secondary cell wall anabolism","type":"broad"},{"name":"down regulation of secondary cell wall biogenesis","type":"exact"},{"name":"down regulation of secondary cell wall biosynthetic process","type":"broad"},{"name":"down regulation of secondary cell wall formation","type":"broad"},{"name":"down regulation of secondary cell wall synthesis","type":"broad"},{"name":"down-regulation of cellulose and pectin-containing secondary cell wall biogenesis","type":"exact"},{"name":"down-regulation of plant-type secondary cell wall biogenesis","type":"exact"},{"name":"down-regulation of secondary cell wall anabolism","type":"broad"},{"name":"down-regulation of secondary cell wall biogenesis","type":"exact"},{"name":"down-regulation of secondary cell wall biosynthetic process","type":"broad"},{"name":"down-regulation of secondary cell wall formation","type":"broad"},{"name":"down-regulation of secondary cell wall synthesis","type":"broad"},{"name":"downregulation of cellulose and pectin-containing secondary cell wall biogenesis","type":"exact"},{"name":"downregulation of plant-type secondary cell wall biogenesis","type":"exact"},{"name":"downregulation of secondary cell wall anabolism","type":"broad"},{"name":"downregulation of secondary cell wall biogenesis","type":"exact"},{"name":"downregulation of secondary cell wall biosynthetic process","type":"broad"},{"name":"downregulation of secondary cell wall formation","type":"broad"},{"name":"downregulation of secondary cell wall synthesis","type":"broad"},{"name":"inhibition of cellulose and pectin-containing secondary cell wall biogenesis","type":"exact"},{"name":"inhibition of plant-type secondary cell wall biogenesis","type":"exact"},{"name":"inhibition of secondary cell wall anabolism","type":"broad"},{"name":"inhibition of secondary cell wall biogenesis","type":"narrow"},{"name":"inhibition of secondary cell wall biosynthetic process","type":"broad"},{"name":"inhibition of secondary cell wall formation","type":"broad"},{"name":"inhibition of secondary cell wall synthesis","type":"broad"},{"name":"negative regulation of cellulose and pectin-containing secondary cell wall biogenesis","type":"exact"},{"name":"negative regulation of plant-type secondary cell wall biogenesis","type":"exact"},{"name":"negative regulation of secondary cell wall anabolism","type":"broad"},{"name":"negative regulation of secondary cell wall biosynthetic process","type":"broad"},{"name":"negative regulation of secondary cell wall formation","type":"broad"},{"name":"negative regulation of secondary cell wall synthesis","type":"broad"}],"termid":"GO:1901347"}


id: FYPO:0001356
data:
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type"}]}]},"pka1delta":{"display_name":"pka1delta","display_uniquename":"pka1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04312:allele-1","expression":"Null"}]}]},"pmk1delta":{"display_name":"pmk1delta","display_uniquename":"pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]},"rad26delta":{"display_name":"rad26delta","display_uniquename":"rad26delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00429:allele-1","expression":"Null"}]}]},"rad3delta":{"display_name":"rad3delta","display_uniquename":"rad3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00364:allele-1","expression":"Null"}]}]},"rad51delta":{"display_name":"rad51delta","display_uniquename":"rad51delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01410:allele-1","expression":"Null"}]}]},"rad9delta":{"display_name":"rad9delta","display_uniquename":"rad9delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01605:allele-1","expression":"Null"}]}]},"ras1delta":{"display_name":"ras1delta","display_uniquename":"ras1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03453:allele-1","expression":"Null"}]}]},"scd1delta":{"display_name":"scd1delta","display_uniquename":"scd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00514:allele-1","expression":"Null"}]}]},"scd2delta":{"display_name":"scd2delta","display_uniquename":"scd2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01794:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]},"vps32delta":{"display_name":"vps32delta","display_uniquename":"vps32delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01242:allele-1","expression":"Null"}]}]},"vps4delta":{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_01680","SJAG_01205"],"name":"abnormal vegetative cell population growth","references_by_uniquename":{"PMID:20368354":null,"PMID:23090706":null,"PMID:23786411":null,"PMID:24184107":null,"PMID:26774782":null,"PMID:27678009":null,"PMID:28954740":null,"PMID:29566183":null,"PMID:30664646":null,"PMID:30726171":null,"PMID:31150379":null,"PMID:32109380":null,"PMID:32243490":null,"PMID:32915139":null,"PMID:33791858":null,"PMID:34198697":null,"PMID:36058798":null,"PMID:37164017":null,"PMID:37233261":null},"single_locus_annotated_genes":["SJAG_00266","SJAG_04697","SJAG_01205","SJAG_00429","SJAG_05207","SJAG_03892","SJAG_01410","SJAG_03453","SJAG_01242","SJAG_01946","SJAG_02763","SJAG_04287","SJAG_00364","SJAG_01794","SJAG_01787","SJAG_01605","SJAG_04703","SJAG_00610","SJAG_02527","SJAG_04464","SJAG_03449","SJAG_00514","SJAG_02592","SJAG_03198","SJAG_04551","SJAG_01680","SJAG_00409","SJAG_01355","SJAG_04312","SJAG_04671"],"single_locus_genotype_uniquenames":["for3delta","gms1delta","oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression","pck1delta","Pmk1Sp-Pmk1_from_S._pombe-other-expression-not_assayed_or_wild_type","man1delta","cox6delta","rad51delta","rad3delta","mrc1delta","ned1delta","cem1delta","pck2delta","chk1delta","sty1delta","oar2delta","vps32delta","pka1delta","atf1delta","cds1delta","lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","cmp7delta","scd2delta","pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","rad26delta","vps4delta","crb2delta","pmk1delta","scd1delta","gpd1delta","oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","rad9delta","Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","ras1delta"],"synonyms":[{"name":"vegetative growth defect","type":"related"}],"termid":"FYPO:0001356","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000103":null,"FYECO:0000117":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYECO:0000314":null,"FYPO:0000079":null,"FYPO:0000080":null,"FYPO:0000082":null,"FYPO:0000085":null,"FYPO:0000087":null,"FYPO:0000088":null,"FYPO:0000097":null,"FYPO:0000106":null,"FYPO:0000107":null,"FYPO:0000714":null,"FYPO:0000841":null,"FYPO:0001214":null,"FYPO:0001234":null,"FYPO:0001355":null,"FYPO:0001408":null,"FYPO:0004481":null,"FYPO:0005152":null,"FYPO:0007521":null,"FYPO:0007522":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"FYPO_EXT:0000003":null}}


id: PBO:0055981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat neuronal 4","termid":"PBO:0055981"}


id: PBO:0048565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgi associated, gamma adaptin ear containing, ARF binding protein 3","termid":"PBO:0048565"}


id: GO:0000465
data:
  {"annotated_genes":["SJAG_04006"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103495],"is_not":false,"summary":null,"term":"GO:0000465"}]},"cv_name":"biological_process","definition":"Exonucleolytic digestion of a pre-rRNA molecule to generate the mature 5'-end of a 5.8S rRNA molecule derived from an originally tricistronic pre-rRNA transcript that contained the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript.","definition_xrefs":["PMID:10690410","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA 5'-end processing","termid":"GO:0000967"},{"relation_name":"part_of","term_name":"maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)","termid":"GO:0000466"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04006":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0042254"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0042254","GO:0010467"],"is_obsolete":false,"name":"exonucleolytic trimming to generate mature 5'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0000465","terms_by_termid":{"GO:0000465":null}}


id: GO:0036288
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ximelagatran stimulus.","definition_xrefs":["GOC:hp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organonitrogen compound","termid":"GO:0010243"},{"relation_name":"is_a","term_name":"response to organic cyclic compound","termid":"GO:0014070"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to ximelagatran","termid":"GO:0036288"}


id: GO:0004941
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of beta2-adrenergic receptors.","definition_xrefs":["GOC:mah","IUPHAR_GPCR:1274"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-adrenergic receptor activity","termid":"GO:0004939"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"beta2-adrenergic receptor activity","synonyms":[{"name":"beta2 adrenoceptor","type":"exact"}],"termid":"GO:0004941"}


id: PBO:0081019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger C2HC-type containing 1A","termid":"PBO:0081019"}


id: PBO:0050343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 45","termid":"PBO:0050343"}


id: PBO:0059658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO1 pseudogene 24","termid":"PBO:0059658"}


id: PR:O59668
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein RMD5 homolog A that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03103","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LisH domain-containing protein C29A3.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A3.03c","secondary_identifiers":["UniProtKB:O59668"],"synonyms":[{"name":"Spom972h-RMND5A","type":"exact"}],"termid":"PR:O59668"}


id: GO:0070307
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a lens fiber cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a lens fiber cell fate. A lens fiber cell is any of the elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye.","definition_xrefs":["GOC:mah","PMID:7693735"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell development","termid":"GO:0002064"},{"relation_name":"part_of","term_name":"lens fiber cell differentiation","termid":"GO:0070306"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lens fiber cell development","synonyms":[{"name":"lens fibre cell development","type":"exact"}],"termid":"GO:0070307"}


id: GO:0004088
data:
  {"annotated_genes":["SJAG_00412","SJAG_00964","SJAG_00392"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[89490,102561,107122],"is_not":false,"summary":null,"term":"GO:0004088"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 ATP + L-glutamine + CO2 + H2O = 2 ADP + phosphate + glutamate + carbamoyl phosphate.","definition_xrefs":["RHEA:18633","EC:6.3.5.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-nitrogen ligase activity, with glutamine as amido-N-donor","termid":"GO:0016884"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00392":null,"SJAG_00412":null,"SJAG_00964":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:CARBPSYN-RXN","Reactome:R-HSA-73577"],"synonyms":[{"name":"CPS activity","type":"related"},{"name":"GD-CPSase activity","type":"related"},{"name":"carbamoyl phosphate synthase (glutamine-hydrolyzing) activity","type":"exact"},{"name":"carbamoyl phosphate synthetase activity","type":"related"},{"name":"carbamoyl-phosphate synthase (glutamine-hydrolysing) activity","type":"related"},{"name":"carbamoyl-phosphate synthetase (glutamine-hydrolysing) activity","type":"related"},{"name":"carbamoyl-phosphate synthetase (glutamine-hydrolyzing) activity","type":"related"},{"name":"carbamoylphosphate synthetase II activity","type":"related"},{"name":"carbamyl phosphate synthetase (glutamine) activity","type":"related"},{"name":"carbon-dioxide::L-glutamine amido-ligase (ADP-forming, carbamate-phosphorylating) activity","type":"related"},{"name":"glutamine-dependent carbamoyl-phosphate synthase activity","type":"related"},{"name":"glutamine-dependent carbamyl phosphate synthetase activity","type":"related"},{"name":"hydrogen-carbonate:L-glutamine amido-ligase (ADP-forming, carbamate-phosphorylating) activity","type":"related"}],"termid":"GO:0004088","terms_by_termid":{"GO:0004088":null}}


id: SO:0001140
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=-79.0 - psi(i+1)=69.0.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gamma_turn","termid":"SO:0001138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"gamma_turn_inverse","secondary_identifiers":["BS:00221"],"synonyms":[{"name":"gamma turn inverse","type":"exact"}],"termid":"SO:0001140"}


id: PBO:0091540
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-terminal acetylation increases F-actin binding affinity","termid":"PBO:0091540"}


id: GO:0010374
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells.","definition_xrefs":["PMID:17259259"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-embryonic development","termid":"GO:0009791"},{"relation_name":"is_a","term_name":"plant epidermis development","termid":"GO:0090558"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"stomatal complex development","termid":"GO:0010374"}


id: PBO:0071416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 22","termid":"PBO:0071416"}


id: GO:1900322
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of maltotetraose transport.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of transport","termid":"GO:0051051"},{"relation_name":"is_a","term_name":"regulation of maltotetraose transport","termid":"GO:1900321"},{"relation_name":"negatively_regulates","term_name":"maltotetraose transport","termid":"GO:2001099"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of maltotetraose transport","synonyms":[{"name":"down regulation of maltotetraose transport","type":"exact"},{"name":"down-regulation of maltotetraose transport","type":"exact"},{"name":"downregulation of maltotetraose transport","type":"exact"},{"name":"inhibition of maltotetraose transport","type":"narrow"}],"termid":"GO:1900322"}


id: PBO:0042684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCAAT enhancer binding protein gamma","termid":"PBO:0042684"}


id: GO:0072470
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that occurs in response to signals generated as a result of cell size control checkpoint signaling.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to mitotic cell cycle checkpoint signaling","termid":"GO:0072414"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cell size control checkpoint signaling","synonyms":[{"name":"cell size control checkpoint effector process","type":"exact"},{"name":"response to mitotic cell cycle cell size control checkpoint signaling","type":"exact"},{"name":"response to signal involved in cell size control checkpoint","type":"exact"}],"termid":"GO:0072470"}


id: PBO:0049659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H4 clustered histone 13","termid":"PBO:0049659"}


id: PBO:0059032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"matrix metallopeptidase 21","termid":"PBO:0059032"}


id: PBO:0043515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contactin associated protein family member 4","termid":"PBO:0043515"}


id: FYPO:0001400
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, and morphology of cytoplasmic microtubules is normal (i.e. indistinguishable from wild type) during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cytoplasmic microtubules during vegetative growth","termid":"FYPO:0001976"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal interphase microtubules","synonyms":[{"name":"normal cytoplasmic microtubules during mitotic interphase","type":"exact"},{"name":"normal interphase cytoplasmic microtubules","type":"exact"},{"name":"normal interphase microtubules during mitotic cell cycle","type":"related"},{"name":"normal interphase microtubules during vegetative growth","type":"exact"}],"termid":"FYPO:0001400"}


id: GO:0030144
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3(6)-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl,1,6(3))-beta-D-mannosyl-1,4-N-acetyl-beta-D-glucosaminyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,2-(N-acetyl-beta-D-glucosaminyl-1,6)-1,2-alpha-D-mannosyl-1,3(6)-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,6(3))-beta-D-mannosyl-1,4-N-acetyl-beta-D-glucosaminyl-R. Only branched mannose glycopeptides with non-reducing N-acetylglucosamine terminal residues act as acceptors.","definition_xrefs":["EC:2.4.1.155"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a glycoprotein","termid":"GO:0140103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140096","GO:0003674","GO:0016757","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity","secondary_identifiers":["Reactome:R-HSA-975916","RHEA:16921","Reactome:R-HSA-9696980","MetaCyc:2.4.1.155-RXN"],"synonyms":[{"name":"GnTV activity","type":"related"},{"name":"N-acetylglucosaminyltransferase V activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:6-[2-(N-acetyl-beta-D-glucosaminyl)-alpha-D-mannosyl]-glycoprotein 6-beta-N-acetyl-D-glucosaminyltransferase activity","type":"related"},{"name":"UDP-N-acetylglucosamine:alpha-mannoside-beta-1,6 N-acetylglucosaminyltransferase activity","type":"related"},{"name":"UDP-N-acetylglucosamine:alpha-mannoside-beta1,6 N-acetylglucosaminyltransferase activity","type":"related"},{"name":"alpha-1,3(6)-mannosylglycoprotein beta-1,6-N-acetylglucosaminyltransferase activity","type":"exact"},{"name":"alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity","type":"exact"},{"name":"alpha-mannoside beta-1,6-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-alpha-mannoside beta-1->6-acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-alpha-mannoside beta1->6-acetylglucosaminyltransferase activity","type":"related"}],"termid":"GO:0030144"}


id: GO:0034384
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a high-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma lipoprotein particle clearance","termid":"GO:0034381"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"high-density lipoprotein particle clearance","synonyms":[{"name":"HDL clearance","type":"exact"}],"termid":"GO:0034384"}


id: GO:0098950
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic early endosome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of postsynaptic early endosome membrane (obsolete GO:0098950)","synonyms":[{"name":"intrinsic to postsynaptic early endosome membrane","type":"narrow"}],"termid":"GO:0098950"}


id: PBO:0002070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase involved in sporulation","termid":"PBO:0002070"}


id: PBO:0079951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 4","termid":"PBO:0079951"}


id: PBO:0050324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 26","termid":"PBO:0050324"}


id: FYPO:0001227
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein that is not normally found in the cytoplasm is observed there, during a cellular response to hydrogen peroxide.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein mislocalized to cytoplasm during vegetative growth","termid":"FYPO:0000783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"protein mislocalized to cytoplasm during cellular response to hydrogen peroxide","synonyms":[{"name":"ectopic protein localization to cytoplasm during cellular response to hydrogen peroxide","type":"exact"},{"name":"protein mislocalised to cytoplasm during cellular response to hydrogen peroxide","type":"exact"},{"name":"protein mislocalized to cytoplasm during cellular response to H2O2","type":"exact"},{"name":"protein mislocalized to cytoplasm during cellular response to hydrogen peroxide during mitotic cell cycle","type":"related"},{"name":"protein mislocalized to cytoplasm during cellular response to hydrogen peroxide during vegetative growth","type":"exact"},{"name":"protein mislocalized to cytoplasm in response to hydrogen peroxide","type":"exact"}],"termid":"FYPO:0001227"}


id: PBO:0078288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Cys (anticodon GCA) 21-1","termid":"PBO:0078288"}


id: GO:0090712
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The end of the outer hair cell which receives and transmits neural signals.","definition_xrefs":["GOC:sl","PMID:12845523"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell pole","termid":"GO:0060187"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"basal pole of outer hair cell","termid":"GO:0090712"}


id: GO:0034653
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of retinoic acid, one of the three components that makes up vitamin A.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diterpenoid catabolic process","termid":"GO:0016103"},{"relation_name":"is_a","term_name":"fat-soluble vitamin catabolic process","termid":"GO:0042363"},{"relation_name":"is_a","term_name":"retinoic acid metabolic process","termid":"GO:0042573"},{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0006766","GO:0044281","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"retinoic acid catabolic process","synonyms":[{"name":"retinoic acid breakdown","type":"exact"},{"name":"retinoic acid catabolism","type":"exact"},{"name":"retinoic acid degradation","type":"exact"},{"name":"vitamin A1 acid catabolic process","type":"exact"}],"termid":"GO:0034653"}


id: GO:0061336
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The shape change of an epithelial cell from a columnar to squamous cell morphology that contributes to the shaping of the Malpighian tubule.","definition_xrefs":["PMID:19783135","GOC:dph","GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell morphogenesis","termid":"GO:0000902"},{"relation_name":"part_of","term_name":"Malpighian tubule morphogenesis","termid":"GO:0007443"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell morphogenesis involved in Malpighian tubule morphogenesis","termid":"GO:0061336"}


id: PBO:0048249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G antigen 12J","termid":"PBO:0048249"}


id: GO:0039577
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host JAK1 (Janus Kinase 1) activity by stopping, preventing or reducing tyrosine phosphorylation of JAK1 and thereby activation of JAK1.","definition_xrefs":["PMID:12620806"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host JAK1 activity by negative regulation of JAK1 phosphorylation (obsolete GO:0039577)","termid":"GO:0039577"}


id: GO:0016735
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 8 reduced ferredoxin + 8 H+ + nitrogen + 16 ATP = 8 oxidized ferredoxin + 2 NH3 + 16 ADP + 16 phosphate.","definition_xrefs":["EC:1.18.6.1"],"gene_count":0,"genotype_count":0,"name":"obsolete vanadium-iron nitrogenase activity (obsolete GO:0016735)","synonyms":[{"name":"vanadium-iron nitrogenase activity","type":"exact"}],"termid":"GO:0016735"}


id: PBO:0077640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin related transmembrane protein 4","termid":"PBO:0077640"}


id: SOFP:evidenceGB
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"evidenceGB","termid":"SOFP:evidenceGB"}


id: FYPO:0003142
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to methyl methanesulfonate is lower than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0006551","FYPO:0000002"],"is_obsolete":false,"name":"decreased RNA level during cellular response to methyl methanesulfonate","synonyms":[{"name":"decreased RNA accumulation during cellular response to methyl methanesulfonate","type":"related"},{"name":"decreased RNA level during cellular response to MMS","type":"exact"},{"name":"decreased RNA level during cellular response to methyl methanesulfonate during mitotic cell cycle","type":"related"},{"name":"decreased RNA level during cellular response to methyl methanesulfonate during vegetative growth","type":"exact"},{"name":"decreased RNA level during cellular response to methyl methanesulphonate","type":"exact"},{"name":"decreased mRNA level during cellular response to methyl methanesulfonate","type":"narrow"},{"name":"decreased transcript level during cellular response to methyl methanesulfonate","type":"exact"},{"name":"reduced RNA level during cellular response to methyl methanesulfonate","type":"exact"}],"termid":"FYPO:0003142"}


id: PBO:0081452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 319","termid":"PBO:0081452"}


id: FYPO:0004060
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which endocytosis does not occur during meiotic interphase II, i.e. the phase between the end of meiosis I cytokinesis the beginning of meiosis II prophase. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.","definition_xrefs":["PomBase:mah","GO:0044844"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal endocytosis","termid":"FYPO:0003886"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abolished endocytosis during meiotic interphase II","synonyms":[{"name":"abolished actin-mediated endocytosis during meiotic interphase II","type":"exact"},{"name":"abolished protein internalization during meiotic interphase II","type":"narrow"},{"name":"absent endocytosis during meiotic interphase II","type":"exact"},{"name":"endocytosis abolished during meiotic interphase II","type":"exact"}],"termid":"FYPO:0004060"}


id: GO:0097148
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A homodimeric protein complex consisting of BCL-2, a member of the Bcl-2 family of anti- and proapoptotic regulators.","definition_xrefs":["PMID:14634621","GOC:so","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Bcl-2 family protein complex","termid":"GO:0097136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"BCL-2 complex","termid":"GO:0097148"}


id: PBO:0087035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L17A; required for processing of 27SB pre-rRNA and formation of stable 66S assembly intermediates; copurifies with the Dam1 complex (aka DASH complex); homologous to mammalian ribosomal protein L17 and bacterial L22; RPL17A has a paralog, RPL17B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress","termid":"PBO:0087035"}


id: GO:0010836
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of protein ADP-ribosylation. Protein ADP-ribosylation is the transfer, from NAD, of ADP-ribose to protein amino acids.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein ADP-ribosylation","termid":"GO:0010835"},{"relation_name":"is_a","term_name":"negative regulation of transferase activity","termid":"GO:0051348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein ADP-ribosylation","synonyms":[{"name":"negative regulation of protein amino acid ADP-ribosylation","type":"exact"}],"termid":"GO:0010836"}


id: PBO:0065302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 12","termid":"PBO:0065302"}


id: PBO:0085214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Palmitoylated plasma membrane-bound casein kinase I (CK1) isoform; shares redundant functions with Yck2p in morphogenesis, proper septin assembly, endocytic trafficking, and glucose sensing; stabilized by Sod1p binding in the presence of glucose and oxygen, causing glucose repression of respiratory metabolism; involved in the phosphorylation and regulation of glucose sensor Rgt2p; YCK1 has a paralog, YCK2, that arose from the whole genome duplication","termid":"PBO:0085214"}


id: GO:1902180
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of verruculogen.","definition_xrefs":["GOC:TermGenie","GOC:di","PMID:23649274"],"gene_count":0,"genotype_count":0,"name":"obsolete verruculogen catabolic process (obsolete GO:1902180)","synonyms":[{"name":"verruculogen breakdown","type":"exact"},{"name":"verruculogen catabolism","type":"exact"},{"name":"verruculogen degradation","type":"exact"}],"termid":"GO:1902180"}


id: GO:0046422
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: violaxanthin + 2 ascorbate = zeaxanthin + 2 dehydroascorbate + 2 H2O; and antheraxanthin + ascorbate = zeaxanthin + dehydroascorbate + H2O.","definition_xrefs":["GOC:ai","ISBN:0471331309","EC:1.23.5.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"violaxanthin de-epoxidase activity","secondary_identifiers":["RHEA:32371"],"synonyms":[{"name":"VDE","type":"related"},{"name":"violaxanthin:ascorbate oxidoreductase activity","type":"related"}],"termid":"GO:0046422"}


id: PBO:0044616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dephospho-CoA kinase domain containing","termid":"PBO:0044616"}


id: PBO:0082377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Basic leucine zipper transcription factor of the ATF/CREB family; forms a complex with Tup1p and Cyc8p to both activate and repress transcription; cytosolic and nuclear protein involved in osmotic and oxidative stress responses","termid":"PBO:0082377"}


id: PBO:0050029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA-DQB1 antisense RNA 1","termid":"PBO:0050029"}


id: GO:0045650
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of macrophage differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of myeloid leukocyte differentiation","termid":"GO:0002762"},{"relation_name":"is_a","term_name":"regulation of macrophage differentiation","termid":"GO:0045649"},{"relation_name":"negatively_regulates","term_name":"macrophage differentiation","termid":"GO:0030225"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of macrophage differentiation","synonyms":[{"name":"down regulation of macrophage differentiation","type":"exact"},{"name":"down-regulation of macrophage differentiation","type":"exact"},{"name":"downregulation of macrophage differentiation","type":"exact"},{"name":"inhibition of macrophage differentiation","type":"narrow"}],"termid":"GO:0045650"}


id: GO:0003674
data:
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