# terms

id: GO:0033658
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change that impairs the structure or function of the host cell chloroplast thylakoid. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated disruption of host cellular anatomical entity","termid":"GO:0052008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated disruption of host chloroplast thylakoid","synonyms":[{"name":"disruption by symbiont of host chloroplast thylakoid","type":"exact"},{"name":"modification by symbiont of host chloroplast thylakoid","type":"related"}],"termid":"GO:0033658"}


id: PBO:0036102
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K9_methylation_at_heterochromatin_island_during_vegetative_growth","termid":"PBO:0036102"}


id: GO:1904755
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of gut granule assembly.","definition_xrefs":["PMID:17535251","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organelle assembly","termid":"GO:1902115"},{"relation_name":"regulates","term_name":"gut granule assembly","termid":"GO:1902900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"regulation of gut granule assembly","synonyms":[{"name":"regulation of gut granule biogenesis","type":"exact"},{"name":"regulation of gut granule formation","type":"exact"}],"termid":"GO:1904755"}


id: GO:0008229
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binds to microorganisms or other particulate material (for example, foreign erythrocytes) to increase the susceptibility of the latter to phagocytosis.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete opsonin activity (obsolete GO:0008229)","synonyms":[{"name":"opsonin activity","type":"exact"}],"termid":"GO:0008229"}


id: GO:0141059
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a symbiont interferes with a host antimicrobial peptide, for example by cleavage or degradation.","definition_xrefs":["PMID:16242332","PMID:19015361","PMID:21335044"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host defenses","termid":"GO:0044414"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated disruption of host antimicrobial peptide activity","synonyms":[{"name":"disruption of host antimicrobial peptide activity","type":"exact"}],"termid":"GO:0141059"}


id: PBO:0029657
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_RNA_level_during_cellular_response_to_iron_ion_starvation","termid":"PBO:0029657"}


id: GO:0070451
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A long, thin cell projection that contains F-actin and tubulin, with microtubules centrally located and F-actin peripherally located.","definition_xrefs":["PMID:11526084"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection","termid":"GO:0120025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cell hair","secondary_identifiers":["Wikipedia:Membrane_nanotube"],"synonyms":[{"name":"imaginal disc-derived wing hair","type":"narrow"},{"name":"non-sensory hair","type":"exact"}],"termid":"GO:0070451"}


id: GO:1901738
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of vitamin A metabolic process.","definition_xrefs":["GOC:TermGenie","PMID:18093975"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of isoprenoid metabolic process","termid":"GO:0019747"},{"relation_name":"is_a","term_name":"regulation of vitamin metabolic process","termid":"GO:0030656"},{"relation_name":"regulates","term_name":"vitamin A metabolic process","termid":"GO:0006776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006766"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006766","GO:0006629"],"is_obsolete":false,"name":"regulation of vitamin A metabolic process","synonyms":[{"name":"regulation of vitamin A metabolism","type":"exact"}],"termid":"GO:1901738"}


id: PATO:0001491
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A paedomorphic growth quality which is due to a reduced rate.","definition_xrefs":["PATOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"paedomorphic growth","termid":"PATO:0001749"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neotenous growth","synonyms":[{"name":"neotenic growth","type":"exact"}],"termid":"PATO:0001491"}


id: PBO:0064855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory inhibitor subunit 14C","termid":"PBO:0064855"}


id: GO:0001858
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with the iC3b product of the complement cascade and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:add","ISBN:0781735149","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"opsonin receptor activity","termid":"GO:0001847"},{"relation_name":"is_a","term_name":"complement receptor activity","termid":"GO:0004875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"complement component iC3b receptor activity","termid":"GO:0001858"}


id: PBO:0066669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ripply transcriptional repressor 2","termid":"PBO:0066669"}


id: PBO:0034728
data:
  {"annotation_feature_type":"gene","cv_name":"DNA_binding_specificity","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"binds with high affinity to mammalian-type 5'-TTAGGG-3' telomeric repeats, and with very low affinity to less stringently conserved S. pombe telomeric repeats","termid":"PBO:0034728"}


id: MOD:01060
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-carboxamidomethyl-L-cysteine.","definition_xrefs":["OMSSA:3","PubMed:10504701","PubMed:12422359","DeltaMass:337","Unimod:4#C","PubMed:18306178","DeltaMass:196","PubMed:11510821"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iodoacetamide derivatized residue","termid":"MOD:00397"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-carboxamidomethyl-L-cysteine","synonyms":[{"name":"CamC","type":"exact"},{"name":"CamCys","type":"exact"},{"name":"Carbamidomethyl","type":"related"},{"name":"Carboxamidomethyl (on Cysteine)","type":"exact"},{"name":"Carboxyamidomethyl Cystenyl","type":"exact"},{"name":"Iodoacetamide derivative","type":"related"},{"name":"S-carbamoylmethyl-L-cysteine","type":"exact"},{"name":"amidocarboxymethylcysteine","type":"exact"},{"name":"carbamidomethylc","type":"exact"},{"name":"carbamoylmethylcysteine","type":"exact"}],"termid":"MOD:01060"}


id: PBO:0031222
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cellular_response_to_heat","termid":"PBO:0031222"}


id: GO:0050956
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events required for an organism to receive an electrical stimulus, convert it to a molecular signal, and recognize and characterize the signal. Many fish possess an electroception sense; for example, the electric eel uses low voltage pulses of electricity for navigation and prey location.","definition_xrefs":["PMID:10210663","Wikipedia:Electroreception","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory perception of electrical stimulus","termid":"GO:0050952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"electroception","synonyms":[{"name":"electroception sense","type":"exact"},{"name":"electroceptive sense","type":"exact"}],"termid":"GO:0050956"}


id: PBO:0038516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABCF1 divergent transcript","termid":"PBO:0038516"}


id: GO:0071300
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to retinoic acid","termid":"GO:0032526"},{"relation_name":"is_a","term_name":"cellular response to lipid","termid":"GO:0071396"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to retinoic acid","synonyms":[{"name":"cellular response to vitamin A acid","type":"exact"}],"termid":"GO:0071300"}


id: PBO:0045857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 47","termid":"PBO:0045857"}


id: PBO:0062351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily M member 2 pseudogene","termid":"PBO:0062351"}


id: GO:0032943
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of a mononuclear cell population by cell division. A mononuclear cell is a leukocyte with a single non-segmented nucleus in the mature form.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte proliferation","termid":"GO:0070661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mononuclear cell proliferation","synonyms":[{"name":"PBMC proliferation","type":"narrow"},{"name":"peripheral blood mononuclear cell proliferation","type":"narrow"}],"termid":"GO:0032943"}


id: FYPO:0000720
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of fatty acid synthase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000661","FYPO:0001985","FYPO:0000707","FYPO:0000652"],"is_obsolete":false,"name":"abnormal fatty acid synthase activity","synonyms":[{"name":"abnormal FAS activity","type":"exact"}],"termid":"FYPO:0000720"}


id: GO:0050411
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: agaritine + acceptor-NH2 = 4-hydroxymethylphenylhydrazine + gamma-L-glutamyl-acceptor.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete agaritine gamma-glutamyltransferase activity (obsolete GO:0050411)","synonyms":[{"name":"(gamma-L-glutamyl)-1-N-(4-hydroxymethylphenyl)hydrazine:(acceptor) gamma-glutamyltransferase activity","type":"related"},{"name":"(gamma-L-glutamyl)-N1-(4-hydroxymethylphenyl)hydrazine:(acceptor) gamma-glutamyltransferase activity","type":"related"},{"name":"agaritine g-glutamyltransferase activity","type":"exact"}],"termid":"GO:0050411"}


id: GO:0010236
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of plastoquinone, a lipid-soluble electron-transporting coenzyme present in the chloroplast.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"quinone biosynthetic process","termid":"GO:1901663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"plastoquinone biosynthetic process","secondary_identifiers":["MetaCyc:PWY-1581"],"synonyms":[{"name":"plastoquinone anabolism","type":"exact"},{"name":"plastoquinone biosynthesis","type":"exact"},{"name":"plastoquinone formation","type":"exact"},{"name":"plastoquinone synthesis","type":"exact"}],"termid":"GO:0010236"}


id: PBO:0090663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human mmtag2 ortholog, implicated in splicing","termid":"PBO:0090663"}


id: MOD:00369
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to O-acetyl-L-serine.","definition_xrefs":["PubMed:14730666","PubMed:7309355","PubMed:12175151","PubMed:11999733","PubMed:489587","PubMed:11857757","PubMed:16731519","ChEBI:17981","RESID:AA0364","Unimod:1#S","PubMed:15350136"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acetylated residue","termid":"MOD:00644"},{"relation_name":"is_a","term_name":"acetylated L-serine","termid":"MOD:00647"},{"relation_name":"is_a","term_name":"O3-acylated L-serine","termid":"MOD:02003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"O-acetyl-L-serine","synonyms":[{"name":"(2S)-3-(acetyloxy)-2-aminopropanoic acid","type":"exact"},{"name":"Acetyl","type":"related"},{"name":"Acetylation","type":"related"},{"name":"MOD_RES O-acetylserine","type":"exact"},{"name":"O-acetyl-L-serine","type":"exact"},{"name":"O-acetylated L-serine","type":"exact"},{"name":"O-acetylserine","type":"exact"},{"name":"OAcSer","type":"exact"},{"name":"serine acetate ester","type":"exact"}],"termid":"MOD:00369"}


id: GO:0060479
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features of a mature cell found in the lung. Differentiation includes the processes involved in commitment of a cell to a specific fate.","definition_xrefs":["GOC:mtg_lung","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"lung development","termid":"GO:0030324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lung cell differentiation","synonyms":[{"name":"pulmonary cell differentiation","type":"exact"}],"termid":"GO:0060479"}


id: GO:1901396
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of transforming growth factor beta2 activation.","definition_xrefs":["GOC:TermGenie","GOC:sl"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transforming growth factor beta2 activation (obsolete GO:1901396)","synonyms":[{"name":"down regulation of TGF-beta 2 activation","type":"exact"},{"name":"down regulation of TGFB2 activation","type":"exact"},{"name":"down regulation of TGFbeta 2 activation","type":"exact"},{"name":"down regulation of transforming growth factor beta2 activation","type":"exact"},{"name":"down-regulation of TGF-beta 2 activation","type":"exact"},{"name":"down-regulation of TGFB2 activation","type":"exact"},{"name":"down-regulation of TGFbeta 2 activation","type":"exact"},{"name":"down-regulation of transforming growth factor beta2 activation","type":"exact"},{"name":"downregulation of TGF-beta 2 activation","type":"exact"},{"name":"downregulation of TGFB2 activation","type":"exact"},{"name":"downregulation of TGFbeta 2 activation","type":"exact"},{"name":"downregulation of transforming growth factor beta2 activation","type":"exact"},{"name":"inhibition of TGF-beta 2 activation","type":"exact"},{"name":"inhibition of TGFB2 activation","type":"exact"},{"name":"inhibition of TGFbeta 2 activation","type":"exact"},{"name":"inhibition of transforming growth factor beta2 activation","type":"narrow"},{"name":"negative regulation of TGF-beta 2 activation","type":"exact"},{"name":"negative regulation of TGFB2 activation","type":"exact"},{"name":"negative regulation of TGFbeta 2 activation","type":"exact"}],"termid":"GO:1901396"}


id: PBO:0067417
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 531, pseudogene","termid":"PBO:0067417"}


id: FYPO:0002364
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H4 acetylation is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone acetylation during vegetative growth","termid":"FYPO:0000456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0002494","FYPO:0001985","FYPO:0005447","FYPO:0002274"],"is_obsolete":false,"name":"abnormal histone H4 acetylation during vegetative growth","synonyms":[{"name":"abnormal histone H4 acetylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002364"}


id: PBO:0060085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 32","termid":"PBO:0060085"}


id: GO:0102665
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: indole-3-acetate + L-glutamate + ATP = H+ + indole-3-acetyl-glutamate + AMP + diphosphoric acid.","definition_xrefs":["GOC:pz","EC:6.3.-.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-nitrogen bonds","termid":"GO:0016879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"indole-3-acetyl-glutamate synthetase activity","secondary_identifiers":["MetaCyc:RXN-2947"],"termid":"GO:0102665"}


id: PATO:0000317
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color that lacks any hues as parts.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"color","termid":"PATO:0000014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"black","termid":"PATO:0000317"}


id: PBO:0082624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of both the SWI/SNF and RSC chromatin remodeling complexes; actin-related protein involved in transcriptional regulation","termid":"PBO:0082624"}


id: RO:0002598
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.","direct_ancestors":[{"relation_name":"is_a","term_name":"capable_of_regulating","termid":"RO:0002596"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capable_of_positively_regulating","termid":"RO:0002598"}


id: GO:0019877
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls.","definition_xrefs":["GOC:ma","ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid biosynthetic process","termid":"GO:0008652"},{"relation_name":"is_a","term_name":"dicarboxylic acid biosynthetic process","termid":"GO:0043650"},{"relation_name":"is_a","term_name":"diaminopimelate metabolic process","termid":"GO:0046451"},{"relation_name":"is_a","term_name":"organonitrogen compound biosynthetic process","termid":"GO:1901566"},{"relation_name":"is_a","term_name":"fatty acid derivative biosynthetic process","termid":"GO:1901570"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"diaminopimelate biosynthetic process","synonyms":[{"name":"diaminopimelate anabolism","type":"exact"},{"name":"diaminopimelate biosynthesis","type":"exact"},{"name":"diaminopimelate formation","type":"exact"},{"name":"diaminopimelate synthesis","type":"exact"}],"termid":"GO:0019877"}


id: FYPO:0000168
data:
  {"alleles_by_uniquename":{"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115586,115462],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004318"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the spindle assembly checkpoint of a mitotic cell cycle is abnormal. The mitotic spindle assembly checkpoint normally delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle. In a mutant, the checkpoint may fail to arrest or delay cell cycle progression under appropriate conditions, or the incidence or duration of arrest or delay may differ from wild type under any specified set of conditions.","definition_xrefs":["GO:0007094","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of mitotic metaphase/anaphase transition","termid":"FYPO:0000200"},{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle checkpoint","termid":"FYPO:0001704"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01330":null},"genotype_count":1,"genotypes_by_uniquename":{"mad2delta":{"display_name":"mad2delta","display_uniquename":"mad2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01330:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000631","FYPO:0001985","FYPO:0001320","FYPO:0000298"],"is_obsolete":false,"name":"abnormal mitotic spindle assembly checkpoint","references_by_uniquename":{"PMID:21802294":null,"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_01330"],"single_locus_genotype_uniquenames":["mad2delta"],"synonyms":[{"name":"abnormal mitotic cell cycle spindle assembly checkpoint","type":"exact"},{"name":"abnormal mitotic spindle assembly checkpoint activation","type":"related"}],"termid":"FYPO:0000168","terms_by_termid":{"FYECO:0000162":null,"FYPO:0004318":null}}


id: GO:0046278
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving protocatechuate, the anion of protocatechuic acid (3,4-dihydroxybenzoic acid).","definition_xrefs":["GOC:ai","PMID:24359411"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol-containing compound metabolic process","termid":"GO:0009712"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"3,4-dihydroxybenzoate metabolic process","synonyms":[{"name":"protocatechuate metabolic process","type":"exact"},{"name":"protocatechuate metabolism","type":"exact"}],"termid":"GO:0046278"}


id: GO:0046483
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete heterocycle metabolic process (obsolete GO:0046483)","termid":"GO:0046483"}


id: GO:1902201
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of bacterial-type flagellum-dependent cell motility.","definition_xrefs":["GOC:cilia","GOC:jl","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of bacterial-type flagellum-dependent cell motility","termid":"GO:1902021"},{"relation_name":"is_a","term_name":"negative regulation of cell motility","termid":"GO:2000146"},{"relation_name":"negatively_regulates","term_name":"bacterial-type flagellum-dependent cell motility","termid":"GO:0071973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of bacterial-type flagellum-dependent cell motility","synonyms":[{"name":"down regulation of bacterial-type flagellar cell motility","type":"exact"},{"name":"down regulation of flagellin-based flagellar cell motility","type":"exact"},{"name":"down-regulation of bacterial-type flagellar cell motility","type":"exact"},{"name":"down-regulation of flagellin-based flagellar cell motility","type":"exact"},{"name":"downregulation of bacterial-type flagellar cell motility","type":"exact"},{"name":"downregulation of flagellin-based flagellar cell motility","type":"exact"},{"name":"inhibition of bacterial-type flagellar cell motility","type":"narrow"},{"name":"inhibition of flagellin-based flagellar cell motility","type":"exact"},{"name":"negative regulation of bacterial-type flagellar cell motility","type":"related"},{"name":"negative regulation of flagellin-based flagellar cell motility","type":"exact"}],"termid":"GO:1902201"}


id: PATO:0000194
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000194 spontaneous_activity (obsolete PATO:0000194)","termid":"PATO:0000194"}


id: GO:0061679
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The Entner-Doudoroff pathway that proceeds through a D-gluconate intermediate.","definition_xrefs":["GOC:dph","PMID:12921536"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Entner-Doudoroff pathway","termid":"GO:0061678"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975","GO:0044281"],"is_obsolete":false,"name":"Entner-Doudoroff pathway through gluconate","synonyms":[{"name":"gluconate pathway","type":"related"}],"termid":"GO:0061679"}


id: PBO:0040804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic helix-loop-helix family member e41","termid":"PBO:0040804"}


id: PBO:0042154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCL15-CCL14 readthrough (NMD candidate)","termid":"PBO:0042154"}


id: PBO:0044092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer/testis antigen family 45 member B1, pseudogene","termid":"PBO:0044092"}


id: PR:O74925
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A vacuolar protein sorting-associated protein 18 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04999","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar membrane protein pep3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC790.02","secondary_identifiers":["UniProtKB:O74925"],"synonyms":[{"name":"Spom972h-VPS18","type":"exact"},{"name":"vacuolar protein sorting-associated protein 18 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74925"}


id: GO:0014862
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of skeletal muscle contraction by regulating force and velocity of shortening. The force of skeletal muscle contraction is produced by acto-myosin interaction processes through formation of cross bridges. The shortening leads to reduction of length of muscle fiber and sarcomeres.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of skeletal muscle contraction","termid":"GO:0014819"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of skeletal muscle contraction by chemo-mechanical energy conversion","termid":"GO:0014862"}


id: GO:0031707
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an endothelin A receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bombesin receptor binding","termid":"GO:0031705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"endothelin A receptor binding","synonyms":[{"name":"endothelin A receptor ligand","type":"narrow"},{"name":"endothelin-1 receptor binding","type":"exact"}],"termid":"GO:0031707"}


id: GO:0020020
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Vacuole within a parasite used for digestion of the host cell cytoplasm. An example of this component is found in the Apicomplexa.","definition_xrefs":["GOC:mb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phagolysosome","termid":"GO:0032010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005773"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005773","GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"food vacuole","secondary_identifiers":["GO:0005772"],"synonyms":[{"name":"digestive vacuole","type":"exact"}],"termid":"GO:0020020"}


id: PBO:0058236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4524b","termid":"PBO:0058236"}


id: GO:0030804
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cyclic nucleotides.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cyclic nucleotide biosynthetic process (obsolete GO:0030804)","synonyms":[{"name":"activation of cyclic nucleotide biosynthetic process","type":"narrow"},{"name":"positive regulation of cyclic nucleotide anabolism","type":"exact"},{"name":"positive regulation of cyclic nucleotide biosynthesis","type":"exact"},{"name":"positive regulation of cyclic nucleotide formation","type":"exact"},{"name":"positive regulation of cyclic nucleotide synthesis","type":"exact"},{"name":"stimulation of cyclic nucleotide biosynthetic process","type":"narrow"},{"name":"up regulation of cyclic nucleotide biosynthetic process","type":"exact"},{"name":"up-regulation of cyclic nucleotide biosynthetic process","type":"exact"},{"name":"upregulation of cyclic nucleotide biosynthetic process","type":"exact"}],"termid":"GO:0030804"}


id: FYPO:0005878
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"Auxotrophy in which a cell is unable to synthesize tryptophan, and therefore requires tryptophan in the medium for vegetative cell growth.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxotrophy","termid":"FYPO:0000128"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype","termid":"FYPO:0004638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"growth auxotrophic for tryptophan","synonyms":[{"name":"growth auxotrophic for tryptophan during mitotic cell cycle","type":"related"},{"name":"growth auxotrophic for tryptophan during vegetative growth","type":"exact"},{"name":"tryptophan auxotrophy","type":"exact"}],"termid":"FYPO:0005878"}


id: GO:0103072
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a (R)-2-hydroxy even numbered straight chain 2,3,4-saturated fatty acyl CoA = formyl-CoA + an odd numbered straight chain 2,3,4-saturated fatty aldehyde.","definition_xrefs":["GOC:pz","EC:4.1.-.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-carbon lyase activity","termid":"GO:0016830"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"straight chain (R)-2-hydroxy fatty acyl-CoA lyase activity","secondary_identifiers":["MetaCyc:RXN66-475"],"termid":"GO:0103072"}


id: GO:0047129
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2S)-2-[(R)-1-carboxyethylamino]pentanoate + H2O + NAD+ = L-2-aminopentanoate + H+ + NADH + pyruvate.","definition_xrefs":["RHEA:21592","EC:1.5.1.28"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor","termid":"GO:0016646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"opine dehydrogenase activity","secondary_identifiers":["MetaCyc:1.5.1.28-RXN","KEGG_REACTION:R03732"],"synonyms":[{"name":"(2S)-2-{[1-(R)-carboxyethyl]amino}pentanoate dehydrogenase (NAD, L-aminopentanoate-forming)","type":"related"},{"name":"(2S)-2-{[1-(R)-carboxyethyl]amino}pentanoate:NAD+ oxidoreductase (L-aminopentanoate-forming)","type":"related"}],"termid":"GO:0047129"}


id: PBO:0027194
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_cytoplasmic_microtubule_plus-end","termid":"PBO:0027194"}


id: PBO:0076907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transferrin","termid":"PBO:0076907"}


id: PBO:0052106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium voltage-gated channel subfamily A regulatory beta subunit 1","termid":"PBO:0052106"}


id: PBO:0050672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family A (Hsp70) member 7 (pseudogene)","termid":"PBO:0050672"}


id: GO:0046571
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-keto-4-methylthiobutyrate + aspartate = methionine + oxaloacetate.","definition_xrefs":["MetaCyc:R15-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016769","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"aspartate-2-keto-4-methylthiobutyrate transaminase activity","termid":"GO:0046571"}


id: PBO:0076954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TGFB2 overlapping transcript 1","termid":"PBO:0076954"}


id: PBO:0077784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA topoisomerase I pseudogene 2","termid":"PBO:0077784"}


id: PATO:0000352
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000352 metabolite composition value (obsolete PATO:0000352)","termid":"PATO:0000352"}


id: PBO:0000404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Erd1 homolog (predicted)","termid":"PBO:0000404"}


id: GO:1902897
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of postsynaptic density protein 95 clustering.","definition_xrefs":["GO_REF:0000058","PMID:10570482","GOC:als","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to membrane","termid":"GO:1905475"},{"relation_name":"is_a","term_name":"regulation of postsynaptic density organization","termid":"GO:1905874"},{"relation_name":"regulates","term_name":"postsynaptic density protein 95 clustering","termid":"GO:0097119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of postsynaptic density protein 95 clustering","synonyms":[{"name":"regulation of Dlg4 clustering","type":"exact"},{"name":"regulation of PSD-95 clustering","type":"exact"},{"name":"regulation of post-synaptic density protein 95 clustering","type":"exact"}],"termid":"GO:1902897"}


id: PBO:0074995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 115-6","termid":"PBO:0074995"}


id: FYPO:0004890
data:
  {"alleles_by_uniquename":{"SJAG_01834:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01834","name":"pom152delta","uniquename":"SJAG_01834:allele-1"},"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03449:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"man1DHEH","gene_uniquename":"SJAG_03449","name":"Man1DHEH","uniquename":"SJAG_03449:allele-2"},"SJAG_03449:allele-3":{"allele_type":"amino_acid_insertion_and_deletion","description":"man1-1-488","gene_uniquename":"SJAG_03449","name":"man1-1-488","uniquename":"SJAG_03449:allele-3"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115496,115497,115498,115500],"is_not":false,"summary":null,"term":"FYPO:0004890"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the distance between one or more telomeres and the nuclear envelope is greater than normal during mitosis.","definition_xrefs":["PMID:19948484","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal telomere-nuclear envelope distance during vegetative growth","termid":"FYPO:0004790"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01834":null,"SJAG_03449":null},"genotype_count":4,"genotypes_by_uniquename":{"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Man1DHEH(man1DHEH)","display_uniquename":"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-2","expression":"Not assayed or wild type"}]}]},"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type":{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]},"man1delta":{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]},"pom152delta":{"display_name":"pom152delta","display_uniquename":"pom152delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01834:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","references_by_uniquename":{"PMID:24184107":null},"single_locus_annotated_genes":["SJAG_01834","SJAG_03449"],"single_locus_genotype_uniquenames":["Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","man1delta","pom152delta"],"synonyms":[{"name":"increased distance between telomeres and nuclear envelope during mitosis","type":"exact"},{"name":"increased telomere-nuclear envelope distance during mitosis during vegetative growth","type":"exact"},{"name":"increased telomere-nuclear envelope distance during mitotic nuclear division","type":"exact"}],"termid":"FYPO:0004890","terms_by_termid":{"FYPO:0004890":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: GO:0035550
data:
  {"annotated_genes":["SJAG_02766"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[87577],"is_not":false,"summary":null,"term":"GO:0035550"}]},"cv_name":"cellular_component","definition":"A multiprotein nickel-containing complex that possesses urease activity (catalysis of the hydrolysis of urea to ammonia and carbon dioxide).","definition_xrefs":["InterPro:IPR008221","PMID:2651866"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02766":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"urease complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0035550","terms_by_termid":{"GO:0035550":null}}


id: GO:0039690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A viral genome replication process where the template genome is positive stranded, single stranded RNA ((+)ssRNA). Replication of the positive strand leads to dsRNA formation, which in turn is transcribed into positive single stranded RNA.","definition_xrefs":["VZ:1116","GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral RNA genome replication","termid":"GO:0039694"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive stranded viral RNA replication","synonyms":[{"name":"ss(+) viral RNA replication","type":"related"}],"termid":"GO:0039690"}


id: PBO:0070794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 24","termid":"PBO:0070794"}


id: PBO:0000348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ctf18 RFC-like complex subunit Dcc1","termid":"PBO:0000348"}


id: GO:0000180
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete cytosolic large ribosomal subunit (obsolete GO:0000180)","synonyms":[{"name":"cytosolic large ribosomal subunit","type":"exact"}],"termid":"GO:0000180"}


id: MOD:00436
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with an N-acetylhexosamine group through a glycosidic bond.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosylated residue","termid":"MOD:00693"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"N-acetylhexosaminylated residue","synonyms":[{"name":"HexNAc","type":"exact"},{"name":"N-Acetylhexosamine","type":"related"}],"termid":"MOD:00436"}


id: SO:0000611
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spliceosomal_intron_region","termid":"SO:0000841"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"branch_site","synonyms":[{"name":"branch point","type":"exact"},{"name":"branch site","type":"exact"},{"name":"branch_point","type":"exact"}],"termid":"SO:0000611"}


id: PBO:0061117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NLRP7 pseudogene 1","termid":"PBO:0061117"}


id: PBO:0067797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 99","termid":"PBO:0067797"}


id: PBO:0038882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylate cyclase 8","termid":"PBO:0038882"}


id: GO:0071442
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the addition of an acetyl group to histone H3 at position 14 of the histone.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of histone H3-K14 acetylation (obsolete GO:0071442)","synonyms":[{"name":"activation of histone H3-K14 acetylation","type":"narrow"},{"name":"positive regulation of histone H3 acetylation at K14","type":"exact"},{"name":"positive regulation of histone H3K14 acetylation","type":"exact"},{"name":"stimulation of histone H3-K14 acetylation","type":"narrow"},{"name":"up regulation of histone H3-K14 acetylation","type":"exact"},{"name":"up-regulation of histone H3-K14 acetylation","type":"exact"},{"name":"upregulation of histone H3-K14 acetylation","type":"exact"}],"termid":"GO:0071442"}


id: GO:0099086
data:
  {"annotated_genes":["SJAG_03438","SJAG_02490","SJAG_02652","SJAG_03843","SJAG_05333","SJAG_04303","SJAG_07002","SJAG_00172","SJAG_04748"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[87599,105663,86486,90874,111632,107229,105761,100971,85219],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030998"}]},"cv_name":"cellular_component","definition":"A proteinaceous scaffold found between homologous chromosomes during meiosis.","definition_xrefs":["GOC:vw","GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"condensed nuclear chromosome","termid":"GO:0000794"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00172":null,"SJAG_02490":null,"SJAG_02652":null,"SJAG_03438":null,"SJAG_03843":null,"SJAG_04303":null,"SJAG_04748":null,"SJAG_05333":null,"SJAG_07002":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005694","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"synaptonemal structure","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0099086","terms_by_termid":{"GO:0030998":null}}


id: GO:0008306
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Learning by associating a stimulus (the cause) with a particular outcome (the effect).","definition_xrefs":["ISBN:0582227089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"learning","termid":"GO:0007612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"associative learning","secondary_identifiers":["Wikipedia:Learning#Associative_learning"],"synonyms":[{"name":"Pavlovian conditioning","type":"exact"},{"name":"classical conditioning","type":"exact"},{"name":"conditional learning","type":"exact"},{"name":"conditional response","type":"exact"}],"termid":"GO:0008306"}


id: GO:0006744
data:
  {"annotated_genes":["SJAG_01866","SJAG_00721","SJAG_00933","SJAG_04000","SJAG_01865","SJAG_04568","SJAG_06603","SJAG_01043","SJAG_01672","SJAG_01820","SJAG_04642","SJAG_00459","SJAG_01668"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83882,85790,87950,87955,94520,99360,104276,105388,109860,110975,111964,113187,115654,115655],"is_not":false,"summary":null,"term":"GO:0006744"},{"annotations":[85348],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1904775"},{"annotations":[104277],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032194"},{"annotations":[111965],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901006"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquinone metabolic process","termid":"GO:0006743"},{"relation_name":"is_a","term_name":"quinone biosynthetic process","termid":"GO:1901663"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00459":null,"SJAG_00721":null,"SJAG_00933":null,"SJAG_01043":null,"SJAG_01668":null,"SJAG_01672":null,"SJAG_01820":null,"SJAG_01865":null,"SJAG_01866":null,"SJAG_04000":null,"SJAG_04568":null,"SJAG_04642":null,"SJAG_06603":null},"genotype_count":0,"in_subsets":["bp_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"ubiquinone biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null,"PMID:29191091":null},"secondary_identifiers":["MetaCyc:UBISYN-PWY"],"synonyms":[{"name":"coenzyme Q biosynthesis","type":"exact"},{"name":"coenzyme Q biosynthetic process","type":"exact"},{"name":"coenzyme Q10 biosynthesis","type":"narrow"},{"name":"coenzyme Q10 biosynthetic process","type":"narrow"},{"name":"coenzyme Q6 biosynthesis","type":"narrow"},{"name":"coenzyme Q6 biosynthetic process","type":"narrow"},{"name":"coenzyme Q8 biosynthesis","type":"narrow"},{"name":"coenzyme Q8 biosynthetic process","type":"narrow"},{"name":"coenzyme Q9 biosynthesis","type":"narrow"},{"name":"coenzyme Q9 biosynthetic process","type":"narrow"},{"name":"ubiquinone anabolism","type":"exact"},{"name":"ubiquinone biosynthesis","type":"exact"},{"name":"ubiquinone formation","type":"exact"},{"name":"ubiquinone synthesis","type":"exact"}],"termid":"GO:0006744","terms_by_termid":{"GO:0006744":null,"GO:0032194":null,"GO:1901006":null,"GO:1904775":null}}


id: GO:0042684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes committed to becoming a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac cell fate commitment","termid":"GO:0060911"},{"relation_name":"part_of","term_name":"cardioblast differentiation","termid":"GO:0010002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardioblast cell fate commitment","termid":"GO:0042684"}


id: PBO:0049796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2","termid":"PBO:0049796"}


id: PBO:0065216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoribosyl pyrophosphate synthetase 1 pseudogene 2","termid":"PBO:0065216"}


id: PBO:0084742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial intermembrane space protein of unknown function; imported via the MIA import machinery; contains an unusual twin cysteine motif (CX13C CX14C)","termid":"PBO:0084742"}


id: FYPO:0000658
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of DNA binding by a gene product is decreased, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA binding","termid":"FYPO:0000656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000653"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000707","FYPO:0000653"],"is_obsolete":false,"name":"decreased DNA binding","synonyms":[{"name":"reduced DNA binding","type":"exact"}],"termid":"FYPO:0000658"}


id: GO:0045745
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of G protein-coupled receptor signaling pathway activity.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of G protein-coupled receptor signaling pathway","termid":"GO:0008277"},{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"positively_regulates","term_name":"G protein-coupled receptor signaling pathway","termid":"GO:0007186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of G protein-coupled receptor signaling pathway","synonyms":[{"name":"activation of G-protein coupled receptor protein signaling pathway","type":"narrow"},{"name":"positive regulation of G protein coupled receptor protein signaling pathway","type":"exact"},{"name":"positive regulation of G protein coupled receptor protein signalling pathway","type":"exact"},{"name":"positive regulation of G-protein coupled receptor protein signaling pathway","type":"exact"},{"name":"positive regulation of G-protein coupled receptor protein signalling pathway","type":"exact"},{"name":"positive regulation of G-protein-coupled receptor protein signaling pathway","type":"exact"},{"name":"positive regulation of G-protein-coupled receptor protein signalling pathway","type":"exact"},{"name":"positive regulation of GPCR protein signaling pathway","type":"exact"},{"name":"positive regulation of GPCR protein signalling pathway","type":"exact"},{"name":"stimulation of G-protein coupled receptor protein signaling pathway","type":"narrow"},{"name":"up regulation of G-protein coupled receptor protein signaling pathway","type":"exact"},{"name":"up-regulation of G-protein coupled receptor protein signaling pathway","type":"exact"},{"name":"upregulation of G-protein coupled receptor protein signaling pathway","type":"exact"}],"termid":"GO:0045745"}


id: GO:0060272
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of skeletal joints are generated and organized during the embryonic phase. A skeletal joint is the connecting structure between the bones of the skeleton.","definition_xrefs":["GOC:BHF","UBERON:0000982","GOC:dph","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic skeletal system morphogenesis","termid":"GO:0048704"},{"relation_name":"part_of","term_name":"embryonic skeletal joint development","termid":"GO:0072498"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic skeletal joint morphogenesis","termid":"GO:0060272"}


id: PR:O74402
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A chaperone protein ClpB that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03391"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein 78, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4F6.17c","secondary_identifiers":["UniProtKB:O74402"],"synonyms":[{"name":"Spom972h-clpB","type":"exact"}],"termid":"PR:O74402"}


id: GO:0070425
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of a nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway (NLR) pathway.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039532"},{"relation_name":"is_a","term_name":"regulation of nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway","termid":"GO:0070424"},{"relation_name":"negatively_regulates","term_name":"nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway","termid":"GO:0035872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway","synonyms":[{"name":"negative regulation of NOD signaling pathway","type":"narrow"},{"name":"negative regulation of nucleotide-binding oligomerization domain containing signaling pathway","type":"narrow"},{"name":"negative regulation of nucleotide-binding oligomerization domain containing signalling pathway","type":"narrow"}],"termid":"GO:0070425"}


id: PBO:0055199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2624","termid":"PBO:0055199"}


id: PATO:0001434
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organismal quality","termid":"PATO:0001995"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reproductive quality","termid":"PATO:0001434"}


id: FYECO:0000167
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which SDS (sodium dodecyl sulfate) was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ SDS","synonyms":[{"name":"sodium dodecyl sulfate added","type":"exact"}],"termid":"FYECO:0000167"}


id: GO:0009555
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates.","definition_xrefs":["GOC:mtg_sensu","GOC:mtg_plant","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gametophyte development","termid":"GO:0048229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pollen development","secondary_identifiers":["GO:0009564","GO:0048231"],"synonyms":[{"name":"formation of generative and vegetative cells","type":"exact"},{"name":"male gametophyte development","type":"exact"},{"name":"male gametophyte formation","type":"exact"},{"name":"microgametophyte development","type":"exact"},{"name":"pollen grain formation","type":"exact"}],"termid":"GO:0009555"}


id: PR:O60112
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC15C4.03 gene.","definition_xrefs":["UniProtKB:O60112","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized Rab geranylgeranyltransferase C15C4.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC15C4.03","synonyms":[{"name":"Spom972h-SPBC15C4.03","type":"exact"}],"termid":"PR:O60112"}


id: PBO:0063934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pim-3 proto-oncogene, serine/threonine kinase","termid":"PBO:0063934"}


id: FYPO:0006247
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle phenotype in which the G2/M transition of the mitotic cell cycle begins earlier than normal during a cellular response to osmotic stress. The duration of G2 phase is thus shorter than normal. The mitotic G2/M transition is the point at which a cell commits to entering M phase, and begins when the kinase activity of M cyclin/CDK complex reaches a threshold high enough for the cell cycle to proceed.","definition_xrefs":["GO:0000086","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"premature mitotic G2/M phase transition","termid":"FYPO:0002516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"premature mitotic G2/M phase transition during cellular response to osmotic stress","synonyms":[{"name":"advanced mitotic G2 phase progression during cellular response to osmotic stress","type":"related"},{"name":"advanced mitotic G2/M transition during cellular response to osmotic stress","type":"exact"},{"name":"cell cycle, mitotic G2 advance during cellular response to osmotic stress","type":"related"},{"name":"decreased duration of mitotic G2 phase during cellular response to osmotic stress","type":"related"},{"name":"decreased duration of mitotic G2 phase during cellular response to osmotic stress during vegetative growth","type":"related"},{"name":"decreased mitotic G2 duration during cellular response to osmotic stress","type":"related"},{"name":"increased rate of mitotic G2 phase progression during cellular response to osmotic stress","type":"related"},{"name":"mitotic G2 advance during cellular response to osmotic stress","type":"related"},{"name":"mitotic G2/M transition advance during cellular response to osmotic stress","type":"exact"},{"name":"mitotic G2/M transition advance during cellular response to osmotic stress during vegetative growth","type":"exact"},{"name":"mitotic cell cycle advance at G2/M transition during cellular response to osmotic stress","type":"exact"},{"name":"premature G2/M phase transition during cellular response to osmotic stress during mitotic cell cycle","type":"exact"},{"name":"premature cell cycle progression through mitotic G2/M phase transition during cellular response to osmotic stress","type":"exact"},{"name":"premature mitotic G2/M phase transition during cellular response to osmotic stress during vegetative growth","type":"exact"},{"name":"premature mitotic G2/M transition during cellular response to osmotic stress","type":"exact"}],"termid":"FYPO:0006247"}


id: FYPO:0004335
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of one protein to another does not occur during a cellular response to hydrogen peroxide. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes.","definition_xrefs":["PomBase:mah","PMID:22139357"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein-protein interaction during cellular response to rapamycin","termid":"FYPO:0003425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000702","FYPO:0000652"],"is_obsolete":false,"name":"abolished protein-protein interaction during cellular response to hydrogen peroxide","synonyms":[{"name":"abolished protein binding cellular response to hydrogen peroxide","type":"exact"},{"name":"abolished protein-protein interaction during cellular response to H2O2","type":"exact"},{"name":"protein-protein interaction abolished during cellular response to hydrogen peroxide","type":"exact"}],"termid":"FYPO:0004335"}


id: GO:0002059
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to thymine.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleobase binding","termid":"GO:0002061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"thymine binding","termid":"GO:0002059"}


id: GO:0140068
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: crotonyl-CoA + histone = CoA + crotonyl-histone.","definition_xrefs":["PMID:25818647"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide crotonyltransferase activity","termid":"GO:0140064"},{"relation_name":"is_a","term_name":"histone modifying activity","termid":"GO:0140993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016746","GO:0140096"],"is_obsolete":false,"name":"histone crotonyltransferase activity","termid":"GO:0140068"}


id: GO:0003288
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process in which a ventricular septum intermedium is generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ventricular septum morphogenesis","termid":"GO:0060412"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ventricular septum intermedium morphogenesis","termid":"GO:0003288"}


id: FYPO:0002528
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which a protein is localized to the cell division site for a shorter time than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cell division site","termid":"FYPO:0001401"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"decreased duration of protein localization to cell division site","synonyms":[{"name":"decreased duration of protein localisation to cell division site","type":"exact"},{"name":"decreased duration of protein localization to cell division site during mitotic cell cycle","type":"related"},{"name":"decreased duration of protein localization to cell division site during vegetative growth","type":"exact"},{"name":"decreased duration of protein recruitment to cell division site","type":"related"},{"name":"reduced duration of protein localization to cell division site","type":"exact"}],"termid":"FYPO:0002528"}


id: PATO:0001177
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001177 blind (obsolete PATO:0001177)","termid":"PATO:0001177"}


id: PBO:0028275
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H4_acetylation_at_centromere_central_core","termid":"PBO:0028275"}


id: PBO:0085673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in phospholipid flippase function; null allele suppresses growth and membrane trafficking defects associated with all flippase null alleles; proposed function as a phospholipid scramblase that reduces membrane asymmetry; PQ loop family member; localizes to the endosome and trans-Golgi network; non-essential gene","termid":"PBO:0085673"}


id: MOD:01371
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE bcecause identical and redundant with MOD:00851. Remap to MOD:00851.","definition_xrefs":["PubMed:8382902"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:01371 deamidation in presence of O18 (obsolete MOD:01371)","synonyms":[{"name":"Deamidated:18O(1)","type":"related"},{"name":"Deamidation in presence of O18","type":"related"}],"termid":"MOD:01371"}


id: PBO:0041265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C1q binding protein pseudogene 2","termid":"PBO:0041265"}


id: GO:0071936
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. In cooperation with a primary Wnt receptor, initiating a change in cell activity through the Wnt signaling pathway.","definition_xrefs":["GOC:mah","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete coreceptor activity involved in Wnt signaling pathway (obsolete GO:0071936)","synonyms":[{"name":"Wnt co-receptor activity","type":"exact"},{"name":"coreceptor activity involved in Wnt receptor signaling pathway","type":"exact"},{"name":"coreceptor activity involved in Wnt receptor signalling pathway","type":"exact"},{"name":"coreceptor activity involved in Wnt-activated signaling pathway","type":"exact"}],"termid":"GO:0071936"}


id: PBO:0074389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"smooth muscle induced lncRNA, enhancer of proliferation","termid":"PBO:0074389"}


id: PBO:0067269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 343, pseudogene","termid":"PBO:0067269"}


id: PBO:0078552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 42","termid":"PBO:0078552"}


id: PR:Q9P7D7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A bifunctional protein aas that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long-chain-fatty-acid--CoA ligase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP4H10.11c","secondary_identifiers":["UniProtKB:Q9P7D7"],"synonyms":[{"name":"SPBP4H10.11c","type":"related"},{"name":"Spom972h-aas","type":"exact"},{"name":"fatty acid activator 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"long-chain acyl-CoA synthetase 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7D7"}


id: GO:0015545
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of bicyclomycin from one side of a membrane to the other. Bicyclomycin (or bicozamycin) is an antibacterial drug often used as a livestock feed additive.","definition_xrefs":["ISBN:091191028X"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter activity","termid":"GO:0022857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"bicyclomycin transmembrane transporter activity","synonyms":[{"name":"bicyclomycin transporter activity","type":"related"},{"name":"bicyclomycin/sulfathiazole:hydrogen antiporter activity","type":"related"}],"termid":"GO:0015545"}


id: PBO:0081701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF622 pseudogene 1","termid":"PBO:0081701"}


id: FYPO:0007131
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the plus ends end of microtubules is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to microtubule cytoskeleton during vegetative growth","termid":"FYPO:0000932"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased protein localization to microtubule plus-end","synonyms":[{"name":"increased protein localisation to microtubule plus-end","type":"exact"},{"name":"increased protein localization to microtubule plus end","type":"exact"},{"name":"increased protein localization to microtubule plus-end during mitotic cell cycle","type":"related"},{"name":"increased protein localization to microtubule plus-end during vegetative growth","type":"exact"}],"termid":"FYPO:0007131"}


id: PR:G2TRV0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- wtf8 gene.","definition_xrefs":["UniProtKB:G2TRV0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein wtf8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC306.10","synonyms":[{"name":"Spom972h-wtf8","type":"exact"}],"termid":"PR:G2TRV0"}


id: PBO:0047286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FA complementation group M","termid":"PBO:0047286"}


id: PBO:0004157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingosine N-acyltransferase Lac1","termid":"PBO:0004157"}


id: FYPO:0002880
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which transcription occurs to a lower extent than normal when the cell is subject to glucose starvation and oxidative stress simultaneously. All genes, or a specific subset of genes, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased transcription during glucose starvation","termid":"FYPO:0003120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0006551","FYPO:0000294"],"is_obsolete":false,"name":"decreased transcription during glucose starvation and oxidative stress","synonyms":[{"name":"decreased transcription during cellular response to glucose starvation and oxidative stress","type":"exact"},{"name":"decreased transcription during glucose depletion and oxidative stress","type":"exact"},{"name":"decreased transcription during glucose deprivation and oxidative stress","type":"exact"},{"name":"decreased transcription during glucose limitation and oxidative stress","type":"exact"},{"name":"decreased transcription in response to glucose starvation and oxidative stress","type":"exact"},{"name":"decreased transcription in response to glucose starvation during oxidative stress","type":"exact"},{"name":"reduced transcription during glucose starvation and oxidative stress","type":"exact"}],"termid":"FYPO:0002880"}


id: PBO:0080395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS26B pseudogene 1","termid":"PBO:0080395"}


id: PBO:0038616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"angiotensin converting enzyme 2","termid":"PBO:0038616"}


id: FYPO:0006516
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which telomere length is normal (i.e. indistinguishable from wild type) during G0 phase.","definition_xrefs":["PomBase:mah","PMID:29167439"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal telomere length","termid":"FYPO:0006515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal telomere length during G0","synonyms":[{"name":"normal telomere length during cell quiescence","type":"exact"},{"name":"normal telomere length during quiescence","type":"exact"}],"termid":"FYPO:0006516"}


id: GO:1904695
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vascular smooth muscle contraction.","definition_xrefs":["GOC:BHF","GOC:rph","GOC:TermGenie","GO_REF:0000058","GOC:BHF_miRNA","PMID:22158624"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vascular associated smooth muscle contraction","termid":"GO:0003056"},{"relation_name":"is_a","term_name":"positive regulation of vasoconstriction","termid":"GO:0045907"},{"relation_name":"is_a","term_name":"positive regulation of smooth muscle contraction","termid":"GO:0045987"},{"relation_name":"positively_regulates","term_name":"vascular associated smooth muscle contraction","termid":"GO:0014829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of vascular associated smooth muscle contraction","synonyms":[{"name":"activation of vascular smooth muscle contraction","type":"narrow"},{"name":"positive regulation of vascular smooth muscle contraction","type":"exact"},{"name":"up regulation of vascular smooth muscle contraction","type":"exact"},{"name":"up-regulation of vascular smooth muscle contraction","type":"exact"},{"name":"upregulation of vascular smooth muscle contraction","type":"exact"}],"termid":"GO:1904695"}


id: PBO:0081060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCHC-type containing 18","termid":"PBO:0081060"}


id: GO:0006566
data:
  {"annotated_genes":["SJAG_02450","SJAG_00234","SJAG_00881","SJAG_03141","SJAG_00830","SJAG_00432","SJAG_03152"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108079,102094,96954,106783,111886],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009088"},{"annotations":[90334,99899],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006567"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aspartate family amino acid metabolic process","termid":"GO:0009066"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00234":null,"SJAG_00432":null,"SJAG_00830":null,"SJAG_00881":null,"SJAG_02450":null,"SJAG_03141":null,"SJAG_03152":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"threonine metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["UM-BBD_pathwayID:met"],"synonyms":[{"name":"methionine and threonine metabolic process","type":"broad"},{"name":"methionine and threonine metabolism","type":"broad"},{"name":"threonine metabolism","type":"exact"}],"termid":"GO:0006566","terms_by_termid":{"GO:0006567":null,"GO:0009088":null}}


id: PBO:0054870
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2284","termid":"PBO:0054870"}


id: PBO:0040788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brain expressed X-linked 5","termid":"PBO:0040788"}


id: GO:0072580
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of a lysine residue in a protein to produce (2S)-2-amino-6-([(3S)-3,6-diaminohexanoyl]amino)hexanoic acid, and the subsequent hydroxylation of the modified lysine residue. This modification is observed in, and is probably unique to, the prokaryotic translation elongation factor P (EF-P).","definition_xrefs":["PMID:20729861","RESID:AA0531","PMID:22706199","GOC:imk","GOC:curators","GOC:mah","RESID:AA0530"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-lysine modification","termid":"GO:0018205"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bacterial-type EF-P lysine modification","synonyms":[{"name":"EF-P modification pathway","type":"exact"}],"termid":"GO:0072580"}


id: PR:Q10138
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- csr102 gene.","definition_xrefs":["UniProtKB:Q10138","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CRAL-TRIO domain-containing protein C3H8.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H8.02","synonyms":[{"name":"Spom972h-csr102","type":"exact"}],"termid":"PR:Q10138"}


id: PBO:0066581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD9-HUS1-RAD1 interacting nuclear orphan 1","termid":"PBO:0066581"}


id: PBO:0047692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fms related receptor tyrosine kinase 4","termid":"PBO:0047692"}


id: PATO:0000935
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000935 relative photosensitivity (obsolete PATO:0000935)","termid":"PATO:0000935"}


id: PBO:0083184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the Ty1 long terminal repeat, YPRWdelta12","termid":"PBO:0083184"}


id: FYPO:0002111
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is inviable, and tapers at one end to a diameter smaller than the other. The cell diameter at the narrow end is smaller than that of a wild-type cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable tapered cell","termid":"FYPO:0002109"},{"relation_name":"is_a","term_name":"inviable vegetative cell with abnormal cell shape","termid":"FYPO:0002451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0001320","FYPO:0000004","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"inviable tapered vegetative cell","synonyms":[{"name":"inviable bottle-shaped vegetative cell","type":"exact"},{"name":"inviable bottle-shaped vegetative cell during mitotic cell cycle","type":"related"},{"name":"inviable bottle/skittle vegetative cell","type":"exact"},{"name":"inviable skittle-shaped vegetative cell","type":"exact"},{"name":"inviable tapered cell during vegetative growth","type":"exact"},{"name":"lethal; tapered vegetative cell","type":"exact"}],"termid":"FYPO:0002111"}


id: PBO:0049631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 34","termid":"PBO:0049631"}


id: FYPO:0006054
data:
  {"alleles_by_uniquename":{"SJAG_02763:allele-4":{"allele_type":"amino_acid_mutation","description":"S235E; S651E","gene_uniquename":"SJAG_02763","name":"ned1S235E/S651E","synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"},"SJAG_02763:allele-5":{"allele_type":"amino_acid_mutation","description":"S499E; S538E; T620E; T638E; S651E","gene_uniquename":"SJAG_02763","name":"ned1-5E","uniquename":"SJAG_02763:allele-5"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115631,115634],"is_not":false,"summary":null,"term":"FYPO:0006054"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of lipid droplet formation is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"lipid droplets present in decreased numbers","termid":"FYPO:0002552"},{"relation_name":"is_a","term_name":"abnormal cellular component organization","termid":"FYPO:0000335"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02763":null},"genotype_count":2,"genotypes_by_uniquename":{"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1-5E(S499E; S538E; T620E; T638E; S651E aa)","display_uniquename":"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-5","expression":"Not assayed or wild type"}]}]},"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1S235E/S651E(S235E; S651E aa)","display_uniquename":"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-4","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased lipid droplet formation","references_by_uniquename":{"PMID:26774782":null},"single_locus_annotated_genes":["SJAG_02763"],"single_locus_genotype_uniquenames":["ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"decreased lipid droplet assembly","type":"exact"},{"name":"decreased lipid particle formation","type":"exact"},{"name":"reduced lipid droplet formation","type":"exact"}],"termid":"FYPO:0006054","terms_by_termid":{"FYPO:0006054":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: FYPO:0003224
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 14 of histone H3 is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone acetylation during vegetative growth","termid":"FYPO:0003221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal histone H3-K14 acetylation during vegetative growth","synonyms":[{"name":"normal histone H3 K14 acetylation during vegetative growth","type":"exact"},{"name":"normal histone H3-K14 acetylation during mitotic cell cycle","type":"related"},{"name":"normal histone H3K14 acetylation during vegetative growth","type":"exact"},{"name":"normal histone lysine H3 K14 acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0003224"}


id: FYPO:0001156
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which cells cause the pH of their growth medium to decrease by a greater amount than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered effect on growth medium","termid":"FYPO:0001155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001155"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001155"],"is_obsolete":false,"name":"decreased pH of growth medium","synonyms":[{"name":"decreased pH level of growth medium","type":"exact"},{"name":"increased growth medium acidification","type":"exact"},{"name":"reduced pH of growth medium","type":"exact"}],"termid":"FYPO:0001156"}


id: PBO:0111496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exon junction complex associated RNA-binding protein Rns1","termid":"PBO:0111496"}


id: GO:0090154
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of sphingolipid biosynthesis. Sphingolipid biosynthesis is the chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid).","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular biosynthetic process","termid":"GO:0031328"},{"relation_name":"is_a","term_name":"positive regulation of lipid biosynthetic process","termid":"GO:0046889"},{"relation_name":"is_a","term_name":"regulation of sphingolipid biosynthetic process","termid":"GO:0090153"},{"relation_name":"positively_regulates","term_name":"sphingolipid biosynthetic process","termid":"GO:0030148"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"positive regulation of sphingolipid biosynthetic process","termid":"GO:0090154"}


id: GO:0072219
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the metanephric cortical collecting duct over time, from its formation to the mature structure. The metanephric cortical collecting duct is the portion of the metanephric collecting duct that resides in the renal cortex.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cortical collecting duct development","termid":"GO:0072059"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric cortical collecting duct development","termid":"GO:0072219"}


id: PBO:0057819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3139","termid":"PBO:0057819"}


id: PBO:0075085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 135","termid":"PBO:0075085"}


id: PBO:0018086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-C ortholog Cnp3","termid":"PBO:0018086"}


id: PBO:0076724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell immune regulator 1, ATPase H+ transporting V0 subunit a3","termid":"PBO:0076724"}


id: GO:1902678
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any ciliary basal body that is part of a right caudal flagellum found in Giardia species (trophozoite stage).","definition_xrefs":["ISBN:9780124260207","GOC:TermGenie","PMID:5961344","GOC:giardia","GO_REF:0000064","PMID:16607022"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ciliary basal body","termid":"GO:0036064"},{"relation_name":"part_of","term_name":"right caudal flagellum","termid":"GO:0097561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0015630","GO:0005575"],"is_obsolete":false,"name":"right caudal basal body","synonyms":[{"name":"cilial basal body of right caudal cilium","type":"exact"},{"name":"cilial basal body of right caudal flagellum","type":"exact"},{"name":"ciliary basal body of right caudal cilium","type":"exact"},{"name":"ciliary basal body of right caudal flagellum","type":"exact"},{"name":"cilium basal body of right caudal cilium","type":"exact"},{"name":"cilium basal body of right caudal flagellum","type":"exact"},{"name":"microtubule basal body of right caudal cilium","type":"exact"},{"name":"microtubule basal body of right caudal flagellum","type":"exact"},{"name":"right caudal flagellum ciliary basal body","type":"exact"}],"termid":"GO:1902678"}


id: PBO:0055381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2811","termid":"PBO:0055381"}


id: PBO:0017064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Mug174","termid":"PBO:0017064"}


id: GO:1901904
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of tyrocidine.","definition_xrefs":["GOC:yaf","UniPathway:UPA00180","PMID:9352938","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"},{"relation_name":"is_a","term_name":"tyrocidine metabolic process","termid":"GO:1901902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tyrocidine biosynthetic process","synonyms":[{"name":"tyrocidine anabolism","type":"exact"},{"name":"tyrocidine biosynthesis","type":"exact"},{"name":"tyrocidine formation","type":"exact"},{"name":"tyrocidine synthesis","type":"exact"}],"termid":"GO:1901904"}


id: FYPO:0001994
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a cell contains a single septum, has one nucleus, is swollen, is elongated, and is inviable. In a swollen cell, both length and diameter may be greater than normal, although the cell is only considered elongated if the length:diameter ratio is also greater than normal. The septum is in an abnormal location, and the nucleus is located in one compartment of the septated cell. The cell compartment containing the nucleus is swollen (i.e. has a larger diameter than the other compartment).","definition_xrefs":["PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"has_part","term_name":"mislocalized septum, near new end","termid":"FYPO:0001391"},{"relation_name":"is_a","term_name":"inviable elongated mononucleate vegetative cell with mislocalized septum","termid":"FYPO:0001992"},{"relation_name":"is_a","term_name":"inviable swollen mononucleate monoseptate vegetative cell","termid":"FYPO:0002103"},{"relation_name":"is_a","term_name":"inviable swollen elongated septated vegetative cell","termid":"FYPO:0002845"},{"relation_name":"output_of","term_name":"abnormal cell cycle arrest in mitotic interphase before NETO","termid":"FYPO:0002017"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000337"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0000641"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000032","FYPO:0000138","FYPO:0000631","FYPO:0000641","FYPO:0000337","FYPO:0000004"],"is_obsolete":false,"name":"inviable swollen elongated mononucleate vegetative cell with mislocalized septum near new end","synonyms":[{"name":"inviable elongated mononucleate vegetative cell with mislocalized septum near new end and increased cell volume","type":"exact"},{"name":"inviable enlarged elongated mononucleate vegetative cell with mislocalized septum near new end","type":"exact"},{"name":"inviable swollen elongated mononucleate cell with mislocalized septum near non-growing end","type":"narrow"},{"name":"inviable swollen elongated mononucleate monoseptate vegetative cell with mislocalized septum near new end","type":"exact"},{"name":"inviable swollen elongated mononucleate vegetative cell with mislocalised septum near new end","type":"exact"},{"name":"inviable swollen elongated mononucleate vegetative cell with mislocalized septum near new end and mislocalized nucleus","type":"exact"},{"name":"inviable swollen elongated mononucleate vegetative cell with mislocalized septum near new end during mitotic cell cycle","type":"related"},{"name":"inviable swollen elongated mononucleate vegetative cell with misplaced septum near new end","type":"exact"},{"name":"inviable swollen elongated mononucleate vegetative cell with single mislocalized septum near new end","type":"exact"},{"name":"lethal; swollen elongated mononucleate vegetative cell with mislocalized septum near new end","type":"exact"},{"name":"long swollen mononucleate cell with mislocalized septum near new end","type":"exact"},{"name":"long swollen mononucleate cell with mislocalized septum near non-growing end","type":"narrow"},{"name":"swollen elongated mononucleate cell with abnormal septum location near new end","type":"exact"},{"name":"swollen elongated mononucleate cell with abnormal septum location near non-growing end","type":"narrow"},{"name":"swollen elongated mononucleate cell with abnormal septum position near new end","type":"exact"},{"name":"swollen elongated mononucleate cell with abnormal septum position near non-growing end","type":"narrow"},{"name":"swollen elongated mononucleate cell with asymmetric septum near new end","type":"exact"},{"name":"swollen elongated mononucleate cell with asymmetric septum near non-growing end","type":"narrow"},{"name":"swollen elongated mononucleate cell with asymmetrically located septum near new end","type":"exact"},{"name":"swollen elongated mononucleate cell with asymmetrically located septum near non-growing end","type":"narrow"},{"name":"swollen elongated mononucleate cell with mislocalised septum near new end","type":"exact"},{"name":"swollen elongated mononucleate cell with mislocalised septum near non-growing end","type":"narrow"},{"name":"swollen elongated mononucleate cell with mislocalized septum near new end","type":"exact"},{"name":"swollen elongated mononucleate cell with mislocalized septum near new end during vegetative growth","type":"exact"},{"name":"swollen elongated mononucleate cell with mislocalized septum near non-growing end","type":"narrow"},{"name":"swollen elongated mononucleate cell with mislocalized septum near non-growing end during vegetative growth","type":"narrow"},{"name":"swollen elongated mononucleate vegetative cell with mislocalized septum near non-growing end","type":"narrow"}],"termid":"FYPO:0001994"}


id: PR:Q09669
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An alcohol dehydrogenase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00054"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alcohol dehydrogenase 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC5H10.06c","secondary_identifiers":["UniProtKB:Q09669"],"synonyms":[{"name":"Spom972h-yiaY","type":"exact"},{"name":"alcohol dehydrogenase IV (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09669"}


id: PBO:0053896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1181","termid":"PBO:0053896"}


id: PBO:0024475
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human USB1","termid":"PBO:0024475"}


id: PR:P30821
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A flavoprotein wrbA that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00863","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P25 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3C7.14c","secondary_identifiers":["UniProtKB:P30821"],"synonyms":[{"name":"Spom972h-wrbA","type":"exact"},{"name":"brefeldin A resistance protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P30821"}


id: PBO:0047628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"factor interacting with PAPOLA and CPSF1","termid":"PBO:0047628"}


id: GO:0005536
data:
  {"annotated_genes":["SJAG_04334","SJAG_04495"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90661,94134],"is_not":false,"summary":null,"term":"GO:0005536"}]},"cv_name":"molecular_function","definition":"Binding to D-enantiomers of glucose.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monosaccharide binding","termid":"GO:0048029"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04334":null,"SJAG_04495":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"D-glucose binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"glucose binding","type":"broad"}],"termid":"GO:0005536","terms_by_termid":{"GO:0005536":null}}


id: PBO:0065181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein S","termid":"PBO:0065181"}


id: PBO:0038929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adhesion G protein-coupled receptor L3","termid":"PBO:0038929"}


id: PBO:0028691
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_spindle_pole_body_organization","termid":"PBO:0028691"}


id: PATO:0001758
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A conductivity quality inhering in motor and sensory nerves by virtue of the bearer's ability to convey electricity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"electrical conductivity","termid":"PATO:0001757"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nerve conductivity","termid":"PATO:0001758"}


id: PBO:0089441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cobalamin (vitamin B12) biosynthesis CobW-like protein","termid":"PBO:0089441"}


id: PBO:0061389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophosmin 1 pseudogene 49","termid":"PBO:0061389"}


id: PBO:0087455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of a Golgi mannosyltransferase complex; complex mediates elongation of the polysaccharide mannan backbone; membrane protein of the mannosyltransferase family; other members of the complex are Anp1p, Mnn9p, Mnn11p, and Hoc1p","termid":"PBO:0087455"}


id: GO:1901352
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of phosphatidylglycerol biosynthetic process.","definition_xrefs":["GOC:TermGenie","PMID:12869188","GOC:dgf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular biosynthetic process","termid":"GO:0031327"},{"relation_name":"is_a","term_name":"negative regulation of phospholipid biosynthetic process","termid":"GO:0071072"},{"relation_name":"is_a","term_name":"regulation of phosphatidylglycerol biosynthetic process","termid":"GO:1901351"},{"relation_name":"negatively_regulates","term_name":"phosphatidylglycerol biosynthetic process","termid":"GO:0006655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"negative regulation of phosphatidylglycerol biosynthetic process","synonyms":[{"name":"down regulation of phosphatidylglycerol anabolism","type":"exact"},{"name":"down regulation of phosphatidylglycerol biosynthesis","type":"exact"},{"name":"down regulation of phosphatidylglycerol biosynthetic process","type":"exact"},{"name":"down regulation of phosphatidylglycerol formation","type":"exact"},{"name":"down regulation of phosphatidylglycerol synthesis","type":"exact"},{"name":"down-regulation of phosphatidylglycerol anabolism","type":"exact"},{"name":"down-regulation of phosphatidylglycerol biosynthesis","type":"exact"},{"name":"down-regulation of phosphatidylglycerol biosynthetic process","type":"exact"},{"name":"down-regulation of phosphatidylglycerol formation","type":"exact"},{"name":"down-regulation of phosphatidylglycerol synthesis","type":"exact"},{"name":"downregulation of phosphatidylglycerol anabolism","type":"exact"},{"name":"downregulation of phosphatidylglycerol biosynthesis","type":"exact"},{"name":"downregulation of phosphatidylglycerol biosynthetic process","type":"exact"},{"name":"downregulation of phosphatidylglycerol formation","type":"exact"},{"name":"downregulation of phosphatidylglycerol synthesis","type":"exact"},{"name":"inhibition of phosphatidylglycerol anabolism","type":"narrow"},{"name":"inhibition of phosphatidylglycerol biosynthesis","type":"narrow"},{"name":"inhibition of phosphatidylglycerol biosynthetic process","type":"narrow"},{"name":"inhibition of phosphatidylglycerol formation","type":"narrow"},{"name":"inhibition of phosphatidylglycerol synthesis","type":"narrow"},{"name":"negative regulation of phosphatidylglycerol anabolism","type":"exact"},{"name":"negative regulation of phosphatidylglycerol biosynthesis","type":"exact"},{"name":"negative regulation of phosphatidylglycerol formation","type":"exact"},{"name":"negative regulation of phosphatidylglycerol synthesis","type":"exact"}],"termid":"GO:1901352"}


id: PBO:0047480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"farnesyl diphosphate synthase pseudogene 7","termid":"PBO:0047480"}


id: GO:0097364
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a calcium ion by a channel that opens in response to a mechanical stress in the form of stretching, and contributing to the regulation of action potential.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","PMID:21290758","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stretch-activated, monoatomic cation-selective, calcium channel activity","termid":"GO:0015275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"stretch-activated, monoatomic cation-selective, calcium channel activity involved in regulation of action potential","synonyms":[{"name":"stretch-activated, cation-selective, calcium channel activity involved in regulation of action potential","type":"broad"}],"termid":"GO:0097364"}


id: PBO:0084084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Guanine nucleotide exchange factor for ADP ribosylation factors (ARFs); involved in vesicular transport between the Golgi and ER, Golgi organization, and actin cytoskeleton organization; GEA1 has a paralog, GEA2, that arose from the whole genome duplication","termid":"PBO:0084084"}


id: PBO:0057373
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548ao","termid":"PBO:0057373"}


id: PBO:0076990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THAP domain containing 6","termid":"PBO:0076990"}


id: GO:0021600
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the abducens nerve. This process pertains to the physical shaping of a rudimentary structure. The motor function of the abducens nerve is to contract the lateral rectus which results in abduction of the eye.","definition_xrefs":["GOC:cls","GOC:dgh","GO_REF:0000021","GOC:dph","GOC:jid","ISBN:0838580343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve structural organization","termid":"GO:0021604"},{"relation_name":"part_of","term_name":"abducens nerve morphogenesis","termid":"GO:0021598"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"abducens nerve structural organization","synonyms":[{"name":"CN VI structural organization","type":"related"},{"name":"abducens nerve structural organisation","type":"exact"}],"termid":"GO:0021600"}


id: FYPO:0002072
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which a prospore has a nucleus in an abnormal location. The normal location is at the midpoint of the long axis of the cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized nucleus","termid":"FYPO:0002069"},{"relation_name":"output_of","term_name":"abnormal nucleus positioning in prospore","termid":"FYPO:0000942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"mislocalized nucleus in prospore","synonyms":[{"name":"abnormal nucleus location in prospore","type":"exact"},{"name":"abnormal nucleus position in prospore","type":"exact"},{"name":"displaced nucleus in prospore","type":"exact"},{"name":"displaced nucleus prospore","type":"exact"},{"name":"mislocalised nucleus in prospore","type":"exact"},{"name":"mislocalized nucleus in forespore","type":"exact"},{"name":"mislocalized prospore nucleus","type":"exact"},{"name":"misplaced prospore nuclei","type":"exact"},{"name":"misplaced prospore nucleus","type":"exact"},{"name":"nuclear displacement in prospore","type":"exact"}],"termid":"FYPO:0002072"}


id: GO:0018153
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of an isopeptide cross-link between peptidyl-lysine and peptidyl-glutamine to produce N6-(L-isoglutamyl)-L-lysine.","definition_xrefs":["RESID:AA0124"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-glutamine modification","termid":"GO:0018199"},{"relation_name":"is_a","term_name":"peptidyl-lysine modification","termid":"GO:0018205"},{"relation_name":"is_a","term_name":"isopeptide cross-linking","termid":"GO:0018262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine","termid":"GO:0018153"}


id: MOD:00014
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to an L-cysteine.","definition_xrefs":["RESID:AA0005","PubMed:6692818","PubMed:1310545","PubMed:3447159","DeltaMass:0","PubMed:15790858","ChEBI:29950","PubMed:7338899"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue","termid":"MOD:01441"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-cysteine residue","synonyms":[{"name":"(2R)-2-amino-3-sulfanylpropanoic acid","type":"exact"},{"name":"(R)-cysteine","type":"exact"},{"name":"2-amino-3-mercaptopropanoic acid","type":"exact"},{"name":"2-amino-3-mercaptopropionic acid","type":"exact"},{"name":"2-azanyl-3-sulfanylpropanoic acid","type":"exact"},{"name":"3-mercapto-L-alanine","type":"exact"},{"name":"Cys","type":"exact"},{"name":"Cysteine (C, Cys)","type":"exact"},{"name":"L-(+)-cysteine","type":"exact"},{"name":"L-cysteine","type":"exact"},{"name":"alpha-amino-beta-mercaptopropanoic acid","type":"exact"},{"name":"alpha-amino-beta-mercaptopropionic acid","type":"exact"},{"name":"alpha-amino-beta-thiolpropionic acid","type":"exact"},{"name":"beta-mercaptoalanine","type":"exact"},{"name":"half-cystine","type":"exact"},{"name":"thioserine","type":"exact"}],"termid":"MOD:00014"}


id: GO:0018786
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-haloalkane + H2O = a primary alcohol + halide.","definition_xrefs":["PMID:3624201","RHEA:19081"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid halide bonds, in C-halide compounds","termid":"GO:0019120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"haloalkane dehalogenase activity","secondary_identifiers":["EC:3.8.1.5","MetaCyc:HALOALKANE-DEHALOGENASE-RXN","UM-BBD_enzymeID:e0003"],"synonyms":[{"name":"1-chlorohexane halidohydrolase activity","type":"related"},{"name":"1-haloalkane dehalogenase activity","type":"related"},{"name":"1-haloalkane halidohydrolase activity","type":"related"}],"termid":"GO:0018786"}


id: PBO:0090966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rab GAP Gyp10","termid":"PBO:0090966"}


id: GO:0070770
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell surface antigen CD47 and the kinase FAK.","definition_xrefs":["PMID:9169439"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"alphaIIb-beta3 integrin-CD47-FAK complex","synonyms":[{"name":"ITGA2b-ITGB3-CD47-FAK complex","type":"narrow"}],"termid":"GO:0070770"}


id: PBO:0012256
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae TRK1 and TRK2","termid":"PBO:0012256"}


id: FYPO:0001454
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population growth phenotype in which vegetative cells grow normally (i.e. indistinguishably from wild type) during a cellular response to freezing conditions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0002058","FYPO:0000003","FYPO:0000257","FYPO:0000139","FYPO:0002057","FYPO:0002060"],"is_obsolete":false,"name":"normal growth during cellular response to freezing","synonyms":[{"name":"normal cell population growth during cellular response to freezing","type":"exact"},{"name":"normal cellular response to freeze-thawing","type":"related"},{"name":"normal cellular response to freezing","type":"related"},{"name":"normal vegetative cell population growth during cellular response to freezing","type":"exact"}],"termid":"FYPO:0001454"}


id: PBO:0050567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histamine receptor H3","termid":"PBO:0050567"}


id: PBO:0062326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily C member 64 pseudogene","termid":"PBO:0062326"}


id: GO:0004276
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the release of mature proteins from their proproteins by cleavage of the terminal bond of Arg-Xaa-Yaa-Arg-Z motifs where Xaa can be any amino acid and Yaa is Arg or Lys. Releases albumin, complement component C3 and von Willebrand factor from their respective precursors.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete furin activity (obsolete GO:0004276)","synonyms":[{"name":"PACE","type":"related"},{"name":"SPC3","type":"related"},{"name":"dibasic processing enzyme activity","type":"related"},{"name":"furin activity","type":"exact"},{"name":"paired basic amino acid cleaving enzyme","type":"related"},{"name":"paired basic amino acid converting enzyme","type":"related"},{"name":"paired basic amino acid residue cleaving enzyme activity","type":"related"},{"name":"prohormone convertase activity","type":"narrow"},{"name":"serine proteinase PACE","type":"related"}],"termid":"GO:0004276"}


id: GO:0047487
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-(4-deoxy-alpha-D-gluc-4-enuronosyl)-D-galacturonate = 2 5-dehydro-4-deoxy-D-glucuronate.","definition_xrefs":["MetaCyc:OLIGOGALACTURONIDE-LYASE-RXN","EC:4.2.2.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"oligogalacturonide lyase activity","secondary_identifiers":["RHEA:20269"],"synonyms":[{"name":"OGTE","type":"related"},{"name":"oligogalacturonate lyase activity","type":"related"},{"name":"unsaturated oligogalacturonate transeliminase activity","type":"related"}],"termid":"GO:0047487"}


id: PBO:0092012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Arginine (ucu), mitochondrial","termid":"PBO:0092012"}


id: PBO:0046607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K9, member 9","termid":"PBO:0046607"}


id: PR:Q10311
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 26S proteasome non-ATPase regulatory subunit 10 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00969","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat-containing protein C6C3.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6C3.08","secondary_identifiers":["UniProtKB:Q10311"],"synonyms":[{"name":"Spom972h-PSMD10","type":"exact"}],"termid":"PR:Q10311"}


id: GO:0003085
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that reduces the force with which blood travels through the systemic arterial circulatory system.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of blood pressure","termid":"GO:0045776"},{"relation_name":"part_of","term_name":"regulation of systemic arterial blood pressure","termid":"GO:0003073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of systemic arterial blood pressure","termid":"GO:0003085"}


id: GO:0045597
data:
  {"annotated_genes":["SJAG_00514","SJAG_04853","SJAG_02392","SJAG_03581","SJAG_02169"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91977,90707,86020],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051519"},{"annotations":[98409],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0075296"},{"annotations":[86875],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903024"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell differentiation","termid":"GO:0045595"},{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"positively_regulates","term_name":"cell differentiation","termid":"GO:0030154"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00514":null,"SJAG_02169":null,"SJAG_02392":null,"SJAG_03581":null,"SJAG_04853":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell differentiation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of cell differentiation","type":"narrow"},{"name":"stimulation of cell differentiation","type":"narrow"},{"name":"up regulation of cell differentiation","type":"exact"},{"name":"up-regulation of cell differentiation","type":"exact"},{"name":"upregulation of cell differentiation","type":"exact"}],"termid":"GO:0045597","terms_by_termid":{"GO:0051519":null,"GO:0075296":null,"GO:1903024":null}}


id: PBO:0053892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1176","termid":"PBO:0053892"}


id: PBO:0061681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin 107","termid":"PBO:0061681"}


id: RO:0002012
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A part of relation that applies only between occurents.","direct_ancestors":[{"relation_name":"is_a","term_name":"part_of","termid":"BFO:0000050"},{"relation_name":"is_a","term_name":"causally_upstream_of_or_within","termid":"RO:0002418"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"occurent_part_of","termid":"RO:0002012"}


id: GO:0035291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The specification of the characteristic structures of the intercalary segment of the anterior head, following establishment of segment boundaries. Identity is considered to be the aggregate of characteristics by which a structure is recognized.","definition_xrefs":["PMID:10477305","ISBN:0878932437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of segmental identity, head","termid":"GO:0007380"},{"relation_name":"part_of","term_name":"anterior head segmentation","termid":"GO:0035288"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of segmental identity, intercalary segment","termid":"GO:0035291"}


id: PR:O13681
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ima1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13681"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integral inner nuclear membrane protein ima1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC737.03c","synonyms":[{"name":"Spom972h-ima1","type":"exact"}],"termid":"PR:O13681"}


id: FYPO:0005962
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of sodium ions into a cell is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transport during vegetative growth","termid":"FYPO:0005973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal sodium import","synonyms":[{"name":"abnormal cellular sodium import","type":"exact"},{"name":"abnormal sodium import across plasma membrane","type":"exact"},{"name":"abnormal sodium import during mitotic cell cycle","type":"related"},{"name":"abnormal sodium import during vegetative growth","type":"exact"},{"name":"abnormal sodium import into cell","type":"exact"},{"name":"abnormal sodium ion import","type":"exact"}],"termid":"FYPO:0005962"}


id: GO:0140246
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a protein at a synapse.","definition_xrefs":["PMID:17062563"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein catabolic process","termid":"GO:0030163"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0008150","GO:0030163"],"is_obsolete":false,"name":"protein catabolic process at synapse","termid":"GO:0140246"}


id: MOD:01652
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that is produced by formation of an adduct with a sulfonyl halide compound used as a reagent.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfonyl halide reagent derivatized residue","termid":"MOD:01652"}


id: _global:related_via_localization_to
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"A relationship that holds via some process of localization","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"related_via_localization_to","secondary_identifiers":["RO:0002337"],"termid":"_global:related_via_localization_to"}


id: MOD:02073
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that contains an L-selenocysteine residue coordinated to one or more metal atoms or metal clusters.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-selenocysteine residue","termid":"MOD:01158"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metal or metal cluster coordinated L-selenocysteine residue","termid":"MOD:02073"}


id: PR:O13620
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An RNA-binding protein 19 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02862"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multiple RNA-binding domain-containing protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP22H7.02c","secondary_identifiers":["UniProtKB:O13620"],"synonyms":[{"name":"Spom972h-RBM19","type":"exact"}],"termid":"PR:O13620"}


id: GO:0060614
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that decreases the rate or extent of mammary gland development in the male by an androgen binding to its receptor, causing a change in state or activity of a cell.","definition_xrefs":["GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of mammary gland development in males by androgen receptor signaling pathway (obsolete GO:0060614)","synonyms":[{"name":"negative regulation of mammary gland development in males by androgen receptor signalling pathway","type":"exact"}],"termid":"GO:0060614"}


id: PBO:0064261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology domain containing A8 pseudogene 1","termid":"PBO:0064261"}


id: PBO:0040944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 interacting protein 3 pseudogene 15","termid":"PBO:0040944"}


id: GO:0048205
data:
  {"annotated_genes":["SJAG_04391","SJAG_03268"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89342,113825],"is_not":false,"summary":null,"term":"GO:0048205"}]},"cv_name":"biological_process","definition":"The addition of COPI proteins and adaptor proteins to Golgi membranes during the formation of transport vesicles, forming a vesicle coat.","definition_xrefs":["GOC:mah","ISBN:0716731363","GOC:jid","PMID:10219233"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi transport vesicle coating","termid":"GO:0048200"},{"relation_name":"part_of","term_name":"COPI-coated vesicle budding","termid":"GO:0035964"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03268":null,"SJAG_04391":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0061024","GO:0006810","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"COPI coating of Golgi vesicle","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"COPI coating of Golgi-derived vesicle","type":"exact"},{"name":"COPI vesicle coating","type":"related"}],"termid":"GO:0048205","terms_by_termid":{"GO:0048205":null}}


id: FYPO:0005792
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a new growth zone forms along the lateral portion of the cell (often in the middle) before septation, such that a single cell grows in the form of the letter T, when the cell undergoes transition from G0 phase to G2. Cell length is normal.","definition_xrefs":["PomBase:vw","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T-shaped cell during recovery from quiescence","termid":"FYPO:0005810"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005568"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0005568","FYPO:0000002","FYPO:0000005"],"is_obsolete":false,"name":"T-shaped cell during G0 to G2 transition","synonyms":[{"name":"T-shaped cell during cell cycle re-entry at G2","type":"exact"},{"name":"T-shaped cell during cell quiescence to G2 transition","type":"exact"},{"name":"T-shaped cell during exit from cell quiescence into G2","type":"exact"},{"name":"T-shaped cell during quiescence to G2 transition","type":"exact"},{"name":"T-shaped cell during recovery from quiescence following G2 arrest","type":"exact"},{"name":"T-shaped cell during recovery from quiescence into G2","type":"exact"},{"name":"cell morphology, T shaped during G0 to G2 transition","type":"exact"}],"termid":"FYPO:0005792"}


id: PBO:0045294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynamin 1 pseudogene 46","termid":"PBO:0045294"}


id: GO:0019698
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of D-galacturonate, the D-enantiomer of galacturonate, the anion of galacturonic acid.","definition_xrefs":["GOC:mah","GOC:ai","GOC:jsg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monosaccharide catabolic process","termid":"GO:0046365"},{"relation_name":"is_a","term_name":"D-galacturonate metabolic process","termid":"GO:0046396"},{"relation_name":"is_a","term_name":"galacturonate catabolic process","termid":"GO:0046397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0005975","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"D-galacturonate catabolic process","secondary_identifiers":["MetaCyc:GALACTUROCAT-PWY"],"synonyms":[{"name":"D-galacturonate breakdown","type":"exact"},{"name":"D-galacturonate catabolism","type":"exact"},{"name":"D-galacturonate degradation","type":"exact"}],"termid":"GO:0019698"}


id: GO:0061830
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The concave part of the late spermatid head or spermatozoon head that forms the ventral portion of the head, particularly in some rodent species.","definition_xrefs":["PMID:22332112","PMID:23403943","PMID:26990065"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"sperm head","termid":"GO:0061827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"concave side of sperm head","termid":"GO:0061830"}


id: GO:1903708
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of hemopoiesis.","definition_xrefs":["PMID:20080761","GOC:PARL","GOC:TermGenie","GO_REF:0000058","GOC:pad"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of immune system process","termid":"GO:0002684"},{"relation_name":"is_a","term_name":"positive regulation of cell development","termid":"GO:0010720"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of hemopoiesis","termid":"GO:1903706"},{"relation_name":"positively_regulates","term_name":"hemopoiesis","termid":"GO:0030097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hemopoiesis","synonyms":[{"name":"activation of blood cell biosynthesis","type":"narrow"},{"name":"activation of blood cell formation","type":"narrow"},{"name":"activation of haemopoiesis","type":"narrow"},{"name":"activation of hematopoiesis","type":"narrow"},{"name":"activation of hemopoiesis","type":"narrow"},{"name":"positive regulation of blood cell biosynthesis","type":"exact"},{"name":"positive regulation of blood cell formation","type":"exact"},{"name":"positive regulation of haemopoiesis","type":"exact"},{"name":"positive regulation of hematopoiesis","type":"exact"},{"name":"up regulation of blood cell biosynthesis","type":"exact"},{"name":"up regulation of blood cell formation","type":"exact"},{"name":"up regulation of haemopoiesis","type":"exact"},{"name":"up regulation of hematopoiesis","type":"exact"},{"name":"up regulation of hemopoiesis","type":"exact"},{"name":"up-regulation of blood cell biosynthesis","type":"exact"},{"name":"up-regulation of blood cell formation","type":"exact"},{"name":"up-regulation of haemopoiesis","type":"exact"},{"name":"up-regulation of hematopoiesis","type":"exact"},{"name":"up-regulation of hemopoiesis","type":"exact"},{"name":"upregulation of blood cell biosynthesis","type":"exact"},{"name":"upregulation of blood cell formation","type":"exact"},{"name":"upregulation of haemopoiesis","type":"exact"},{"name":"upregulation of hematopoiesis","type":"exact"},{"name":"upregulation of hemopoiesis","type":"exact"}],"termid":"GO:1903708"}


id: PBO:0043494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contactin 3","termid":"PBO:0043494"}


id: PR:P0CT56
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps1401 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P0CT56"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S14-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H5.05c","synonyms":[{"name":"Spom972h-rps1401","type":"exact"}],"termid":"PR:P0CT56"}


id: PBO:0004794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII-coated vesicle component Sec13","termid":"PBO:0004794"}


id: PBO:0029005
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-telophase_nuclear_clustering","termid":"PBO:0029005"}


id: PBO:0087515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of heterotrimeric Replication Protein A (RPA); RPA is a highly conserved single-stranded DNA binding protein complex involved in DNA replication, repair, recombination; RPA protects against inappropriate telomere recombination, and upon telomere uncapping, prevents cell proliferation by a checkpoint-independent pathway; with Sgs1p-Top2p-Rmi1p, stimulates DNA catenation/decatenation activity of Top3p; protein abundance increases in response to DNA replication stress","termid":"PBO:0087515"}


id: GO:1903966
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of monounsaturated fatty acid.","definition_xrefs":["GOC:hjd","PMID:16443825","GO_REF:0000068","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid biosynthetic process","termid":"GO:0006633"},{"relation_name":"is_a","term_name":"monounsaturated fatty acid metabolic process","termid":"GO:1903964"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"monounsaturated fatty acid biosynthetic process","synonyms":[{"name":"monounsaturated fatty acid anabolism","type":"exact"},{"name":"monounsaturated fatty acid biosynthesis","type":"exact"},{"name":"monounsaturated fatty acid formation","type":"exact"},{"name":"monounsaturated fatty acid synthesis","type":"exact"}],"termid":"GO:1903966"}


id: PR:O74465
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hrr1 gene.","definition_xrefs":["UniProtKB:O74465","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"helicase required for RNAi-mediated heterochromatin assembly 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1739.03","synonyms":[{"name":"Spom972h-hrr1","type":"exact"}],"termid":"PR:O74465"}


id: PATO:0001768
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A viability quality inhering in a bearer or a population by virtue of some of it's members' inability to survive to reproduce.","definition_xrefs":["PATOC:CVC"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viability","termid":"PATO:0000169"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"semi-lethal (sensu genetics)","termid":"PATO:0001768"}


id: PBO:0043704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COX6A1 pseudogene 1","termid":"PBO:0043704"}


id: PBO:0059145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MPL proto-oncogene, thrombopoietin receptor","termid":"PBO:0059145"}


id: GO:0097011
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a granulocyte macrophage colony-stimulating factor stimulus.","definition_xrefs":["GOC:ebc","PMID:7901744","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to cytokine stimulus","termid":"GO:0071345"},{"relation_name":"is_a","term_name":"response to granulocyte macrophage colony-stimulating factor","termid":"GO:0097012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to granulocyte macrophage colony-stimulating factor stimulus","synonyms":[{"name":"cellular response to GM-CSF stimulus","type":"exact"}],"termid":"GO:0097011"}


id: FYPO:0001918
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing trifluoperazine.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0002058","FYPO:0000257","FYPO:0000139","FYPO:0000003","FYPO:0002060"],"is_obsolete":false,"name":"normal growth on trifluoperazine","synonyms":[{"name":"normal cell population growth in presence of trifluoperazine","type":"exact"},{"name":"normal cell population growth on trifluoperazine","type":"exact"},{"name":"normal cellular response to trifluoperazine","type":"related"},{"name":"normal vegetative cell population growth on trifluoperazine","type":"exact"}],"termid":"FYPO:0001918"}


id: PBO:0056121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LYR motif containing 9","termid":"PBO:0056121"}


id: GO:2000623
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of mRNA catabolic process","termid":"GO:1902373"},{"relation_name":"is_a","term_name":"regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay","termid":"GO:2000622"},{"relation_name":"negatively_regulates","term_name":"nuclear-transcribed mRNA catabolic process, nonsense-mediated decay","termid":"GO:0000184"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0016071"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0016071"],"is_obsolete":false,"name":"negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay","synonyms":[{"name":"negative regulation of mRNA breakdown, nonsense-mediated decay","type":"exact"},{"name":"negative regulation of mRNA catabolic process, nonsense-mediated","type":"exact"},{"name":"negative regulation of mRNA catabolism, nonsense-mediated","type":"exact"},{"name":"negative regulation of mRNA degradation, nonsense-mediated decay","type":"exact"},{"name":"negative regulation of nonsense-mediated mRNA decay","type":"exact"},{"name":"negative regulation of nuclear mRNA catabolic process, nonsense-mediated decay","type":"exact"}],"termid":"GO:2000623"}


id: GO:0009331
data:
  {"annotated_genes":["SJAG_01012","SJAG_00409"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[62163,68148],"is_not":false,"summary":null,"term":"GO:0009331"}]},"cv_name":"cellular_component","definition":"An enzyme complex that catalyzes the oxidation of sn-glycerol 3-phosphate to dihydroxyacetone phosphate, with concurrent reduction of flavin adenine dinucleotide (FAD) to FADH2. In E. coli, the complex is either a GlpA-GlpB-GlpC heterotrimer that functions in anaerobic conditions, or a GlpD homodimer that functions in aerobic conditions.","definition_xrefs":["PMID:18296637","PMID:7576488","PMID:3286606"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00409":null,"SJAG_01012":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"glycerol-3-phosphate dehydrogenase (FAD) complex","references_by_uniquename":{"GO_REF:0000104":null},"synonyms":[{"name":"aerobic glycerol 3-phosphate dehydrogenase","type":"narrow"},{"name":"anaerobic glycerol-3-phosphate dehydrogenase","type":"narrow"},{"name":"glycerol-3-phosphate dehydrogenase complex","type":"broad"}],"termid":"GO:0009331","terms_by_termid":{"GO:0009331":null}}


id: PBO:0077611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMSB4X pseudogene 2","termid":"PBO:0077611"}


id: PBO:0059667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO1 pseudogene 33","termid":"PBO:0059667"}


id: GO:2000739
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mesenchymal stem cell differentiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of stem cell differentiation","termid":"GO:2000736"},{"relation_name":"regulates","term_name":"mesenchymal stem cell differentiation","termid":"GO:0072497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mesenchymal stem cell differentiation","termid":"GO:2000739"}


id: PBO:0013021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 snRNP subunit Sap114","termid":"PBO:0013021"}


id: GO:0015252
data:
  {"annotated_genes":["SJAG_02598","SJAG_MIT37","SJAG_00438","SJAG_00542","SJAG_MIT15","SJAG_MIT09","SJAG_00985","SJAG_07003","SJAG_05204","SJAG_02564","SJAG_00915","SJAG_01471","SJAG_03114","SJAG_00836","SJAG_03925","SJAG_04122","SJAG_02105","SJAG_00133"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97936,90973,104899,85292,101105,104012,115125,92750,115135,115130,88977,111950,89997,99153,89398,103922,88976,99806,99777],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046933"}]},"cv_name":"molecular_function","definition":"Enables the facilitated diffusion of a hydrogen ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.","definition_xrefs":["GOC:pr","ISBN:0815340729","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic cation channel activity","termid":"GO:0005261"},{"relation_name":"is_a","term_name":"proton transmembrane transporter activity","termid":"GO:0015078"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00133":null,"SJAG_00438":null,"SJAG_00542":null,"SJAG_00836":null,"SJAG_00915":null,"SJAG_00985":null,"SJAG_01471":null,"SJAG_02105":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_03114":null,"SJAG_03925":null,"SJAG_04122":null,"SJAG_05204":null,"SJAG_07003":null,"SJAG_MIT09":null,"SJAG_MIT15":null,"SJAG_MIT37":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"proton channel activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9729542","RHEA:34979"],"synonyms":[{"name":"hydrogen ion channel activity","type":"exact"}],"termid":"GO:0015252","terms_by_termid":{"GO:0046933":null}}


id: PR:O60107
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug186 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60107"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin-41 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC14F5.11c","synonyms":[{"name":"Spom972h-mug186","type":"exact"},{"name":"meiotically up-regulated gene 186 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60107"}


id: PATO:0002429
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter X.","definition_xrefs":["PATOC:WC"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"x-shaped","termid":"PATO:0002429"}


id: PBO:0047698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FLYWCH-type zinc finger 1 pseudogene 1","termid":"PBO:0047698"}


id: GO:2001275
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of glucose import in response to insulin stimulus.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of glucose import in response to insulin stimulus (obsolete GO:2001275)","synonyms":[{"name":"positive regulation of cellular glucose import in response to insulin stimulus","type":"exact"}],"termid":"GO:2001275"}


id: PBO:0063775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHF5A pseudogene 2","termid":"PBO:0063775"}


id: PBO:0042705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CUGBP Elav-like family member 4","termid":"PBO:0042705"}


id: PBO:0058519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5707","termid":"PBO:0058519"}


id: PBO:0018136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoprotein phosphatase involved in unfolded protein response (predicted)","termid":"PBO:0018136"}


id: PBO:0079494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin domain containing 15","termid":"PBO:0079494"}


id: PBO:0077673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF receptor superfamily member 19","termid":"PBO:0077673"}


id: PBO:0039478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 20 family member A1","termid":"PBO:0039478"}


id: PBO:0062135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily F member 2 pseudogene","termid":"PBO:0062135"}


id: PBO:0038725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin gamma 1 pseudogene 20","termid":"PBO:0038725"}


id: PBO:0063826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paired like homeobox 2A","termid":"PBO:0063826"}


id: FYPO:0001210
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of Glc2Man9GlcNAc2 measured in a cell is too low to detect. Glc2Man9GlcNAc2 is an N-glycan that is involved in post-translational modification of proteins, and consists of a branched ten-membered mannooligosaccharide containing two D-glucose residues, nine D-mannosyl residues and two N-acetylglucosamine residues.","definition_xrefs":["PMID:9813085","PomBase:mah","CHEBI:59082"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide absent from cell","termid":"FYPO:0001209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"Glc2Man9GlcNAc absent from cell","synonyms":[{"name":"Glc2Man9GlcNAc absent from cell during mitotic cell cycle","type":"related"},{"name":"Glc2Man9GlcNAc absent from cell during vegetative growth","type":"exact"},{"name":"Glc2Man9GlcNAc2 absent from cell","type":"exact"},{"name":"absent Glc2Man9GlcNAc","type":"exact"}],"termid":"FYPO:0001210"}


id: PBO:0062565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily AE member 1 pseudogene","termid":"PBO:0062565"}


id: GO:0071760
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex composed of two identical immunoglobulin heavy chains of the IgY isotype and two identical immunoglobulin light chains, held together by disulfide bonds. An IgY immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph.","definition_xrefs":["ISBN:0781765196","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin complex","termid":"GO:0019814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"IgY immunoglobulin complex","termid":"GO:0071760"}


id: PBO:0013479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydrofolate reductase/ serine hydrolase family fusion protein Dfr1","termid":"PBO:0013479"}


id: PBO:0051853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iroquois homeobox 6","termid":"PBO:0051853"}


id: GO:0060003
data:
  {"annotated_genes":["SJAG_02399"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103961],"is_not":false,"summary":null,"term":"GO:0060003"}]},"cv_name":"biological_process","definition":"The directed movement of copper ions out of a cell or organelle.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"copper ion transmembrane transport","termid":"GO:0035434"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02399":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"copper ion export","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"copper export","type":"exact"}],"termid":"GO:0060003","terms_by_termid":{"GO:0060003":null}}


id: GO:0046467
data:
  {"annotated_genes":["SJAG_04337","SJAG_02429","SJAG_04165","SJAG_03076","SJAG_03506","SJAG_02903","SJAG_02085","SJAG_04550","SJAG_06383","SJAG_01227","SJAG_02523","SJAG_01570","SJAG_03801","SJAG_00068","SJAG_03115","SJAG_04975","SJAG_03672","SJAG_04878","SJAG_02776","SJAG_00846","SJAG_01860","SJAG_05311","SJAG_04913","SJAG_01356","SJAG_03690","SJAG_00295","SJAG_03015","SJAG_03292","SJAG_05278","SJAG_02488","SJAG_04107","SJAG_02706","SJAG_02056","SJAG_04178","SJAG_01057","SJAG_04986","SJAG_04881","SJAG_02590","SJAG_03066","SJAG_00506","SJAG_00880","SJAG_02168","SJAG_01857","SJAG_03878","SJAG_05327","SJAG_03953","SJAG_02305","SJAG_00176","SJAG_02804","SJAG_00831","SJAG_05219","SJAG_01300","SJAG_02885","SJAG_01416","SJAG_04119","SJAG_06425","SJAG_02842","SJAG_01219","SJAG_02913","SJAG_04924"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96858,107015],"is_not":false,"summary":null,"term":"GO:0046467"},{"annotations":[110056,83613,87527,88351,99830],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0016255"},{"annotations":[104926,88901,106182,88030,101641,105825],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046513"},{"annotations":[92555,87358,107707,85091,85706,94991,99157,103657,94238,84824,89111,96345,99893,110892,111316,106038,90642,94785,89656,96411,89202,102825,108468,97721,113327,112242,104694],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006506"},{"annotations":[86883,91865,91381],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051999"},{"annotations":[108647,101984,89678,85660,110893,86746,93635,96363,91272,98277,97529,88071,105826,113603,105737,87932],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030148"},{"annotations":[105827,93036,101642,102086,93795,88902],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046512"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of membrane lipids, any lipid found in or associated with a biological membrane.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane lipid metabolic process","termid":"GO:0006643"},{"relation_name":"is_a","term_name":"lipid biosynthetic process","termid":"GO:0008610"},{"relation_name":"is_a","term_name":"cellular biosynthetic process","termid":"GO:0044249"}],"gene_count":60,"genes_by_uniquename":{"SJAG_00068":null,"SJAG_00176":null,"SJAG_00295":null,"SJAG_00506":null,"SJAG_00831":null,"SJAG_00846":null,"SJAG_00880":null,"SJAG_01057":null,"SJAG_01219":null,"SJAG_01227":null,"SJAG_01300":null,"SJAG_01356":null,"SJAG_01416":null,"SJAG_01570":null,"SJAG_01857":null,"SJAG_01860":null,"SJAG_02056":null,"SJAG_02085":null,"SJAG_02168":null,"SJAG_02305":null,"SJAG_02429":null,"SJAG_02488":null,"SJAG_02523":null,"SJAG_02590":null,"SJAG_02706":null,"SJAG_02776":null,"SJAG_02804":null,"SJAG_02842":null,"SJAG_02885":null,"SJAG_02903":null,"SJAG_02913":null,"SJAG_03015":null,"SJAG_03066":null,"SJAG_03076":null,"SJAG_03115":null,"SJAG_03292":null,"SJAG_03506":null,"SJAG_03672":null,"SJAG_03690":null,"SJAG_03801":null,"SJAG_03878":null,"SJAG_03953":null,"SJAG_04107":null,"SJAG_04119":null,"SJAG_04165":null,"SJAG_04178":null,"SJAG_04337":null,"SJAG_04550":null,"SJAG_04878":null,"SJAG_04881":null,"SJAG_04913":null,"SJAG_04924":null,"SJAG_04975":null,"SJAG_04986":null,"SJAG_05219":null,"SJAG_05278":null,"SJAG_05311":null,"SJAG_05327":null,"SJAG_06383":null,"SJAG_06425":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"membrane lipid biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"membrane lipid anabolism","type":"exact"},{"name":"membrane lipid biosynthesis","type":"exact"},{"name":"membrane lipid formation","type":"exact"},{"name":"membrane lipid synthesis","type":"exact"}],"termid":"GO:0046467","terms_by_termid":{"GO:0006506":null,"GO:0016255":null,"GO:0030148":null,"GO:0046467":null,"GO:0046512":null,"GO:0046513":null,"GO:0051999":null}}


id: GO:0102149
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-[(2E,6E)-farnesyl]-L-cysteine + O2 + H2O = (2-trans,6-trans)-farnesal + L-cysteine + hydrogen peroxide.","definition_xrefs":["GOC:pz","EC:1.8.3.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor","termid":"GO:0016670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"farnesylcysteine lyase activity","secondary_identifiers":["MetaCyc:RXN-11623","RHEA:30231"],"termid":"GO:0102149"}


id: PBO:0086439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative kinase; suppressor of GTPase mutant; similar to bovine rhodopsin kinase; may have a role in intracellular sterol transport","termid":"PBO:0086439"}


id: PBO:0055265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2692","termid":"PBO:0055265"}


id: PBO:0004751
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microphthalmia","termid":"PBO:0004751"}


id: GO:0106077
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of a histone by the addition of an succinyl group.","definition_xrefs":["PMID:29211711"],"gene_count":0,"genotype_count":0,"name":"obsolete histone succinylation (obsolete GO:0106077)","termid":"GO:0106077"}


id: PBO:0084891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial translational activator of the COB mRNA; membrane protein that interacts with translating ribosomes, acts on the COB mRNA 5'-untranslated leader","termid":"PBO:0084891"}


id: GO:0097609
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A motile cilium found in dinoflagellates. It trails the cell and acts as a steering rudder. It is often partially contained in a furrow called the sulcus, and emerges from a flagellar pore located in the sulcus.","definition_xrefs":["Wikipedia:Dinoflagellate#Morphology","GOC:at"],"direct_ancestors":[{"relation_name":"is_a","term_name":"9+2 motile cilium","termid":"GO:0097729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"longitudinal flagellum","synonyms":[{"name":"longitudinal cilium","type":"exact"}],"termid":"GO:0097609"}


id: GO:0061633
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glucose into pyruvate, in which the glucose is converted to glucose-6-phosphate intermediate coupled to transmembrane transport.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycolytic process through glucose-6-phosphate","termid":"GO:0061620"},{"relation_name":"is_a","term_name":"glucose catabolic process to pyruvate","termid":"GO:0061718"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006091","GO:0008150","GO:0055086","GO:0005975","GO:0044281"],"is_obsolete":false,"name":"transport-coupled glycolytic process through glucose-6-phosphate","secondary_identifiers":["MetaCyc:GLYCOLYSIS"],"termid":"GO:0061633"}


id: MOD:00836
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes two (2)H deuterium atoms for two (1)H protium atoms.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deuterium substituted residue","termid":"MOD:00786"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deuterium disubstituted residue","synonyms":[{"name":"D(H)2Res","type":"exact"}],"termid":"MOD:00836"}


id: PBO:0067348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 445, pseudogene","termid":"PBO:0067348"}


id: PBO:0053705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 907","termid":"PBO:0053705"}


id: PBO:0044176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"catenin alpha like 1","termid":"PBO:0044176"}


id: FYPO:0007824
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115193,115194],"is_not":false,"summary":null,"term":"FYPO:0007824"}]},"cv_name":"fission_yeast_phenotype","definition":"A biological process phenotype in which a response to quorum sensing molecules (QSMs) is decreased. The amount of QSMs may be normal.","definition_xrefs":["PMID:31150379","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal quorum sensing","termid":"FYPO:0007823"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_02592":null},"genotype_count":2,"genotypes_by_uniquename":{"atf1delta":{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased quorum sensing response","references_by_uniquename":{"PMID:31150379":null},"single_locus_annotated_genes":["SJAG_02592","SJAG_00266"],"single_locus_genotype_uniquenames":["atf1delta","sty1delta"],"synonyms":[{"name":"deficient in quorum sensing","type":"exact"},{"name":"quorum sensing attenuated","type":"exact"},{"name":"quorum sensing decreased","type":"exact"},{"name":"quorum sensing deficient","type":"exact"}],"termid":"FYPO:0007824","terms_by_termid":{"FYECO:0000314":null,"FYPO:0007824":null}}


id: GO:0001916
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of T cell mediated cytotoxicity.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte mediated cytotoxicity","termid":"GO:0001912"},{"relation_name":"is_a","term_name":"regulation of T cell mediated cytotoxicity","termid":"GO:0001914"},{"relation_name":"is_a","term_name":"positive regulation of T cell mediated immunity","termid":"GO:0002711"},{"relation_name":"positively_regulates","term_name":"T cell mediated cytotoxicity","termid":"GO:0001913"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of T cell mediated cytotoxicity","synonyms":[{"name":"activation of T cell mediated cytotoxicity","type":"narrow"},{"name":"positive regulation of T cell mediated apoptosis","type":"exact"},{"name":"positive regulation of T cell mediated cell death","type":"exact"},{"name":"positive regulation of T cell mediated cell killing","type":"exact"},{"name":"positive regulation of T cell mediated cytolysis","type":"related"},{"name":"positive regulation of T lymphocyte mediated cytotoxicity","type":"exact"},{"name":"positive regulation of T-cell mediated apoptosis","type":"exact"},{"name":"positive regulation of T-cell mediated cell death","type":"exact"},{"name":"positive regulation of T-cell mediated cell killing","type":"exact"},{"name":"positive regulation of T-cell mediated cytolysis","type":"related"},{"name":"positive regulation of T-cell mediated cytotoxicity","type":"exact"},{"name":"positive regulation of T-lymphocyte mediated cytotoxicity","type":"exact"},{"name":"stimulation of T cell mediated cytotoxicity","type":"narrow"},{"name":"up regulation of T cell mediated cytotoxicity","type":"exact"},{"name":"up-regulation of T cell mediated cytotoxicity","type":"exact"},{"name":"upregulation of T cell mediated cytotoxicity","type":"exact"}],"termid":"GO:0001916"}


id: PBO:0045992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EI24 pseudogene 6","termid":"PBO:0045992"}


id: PBO:0110117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial tRNA (guanine-N2-)-methyltransferase Trm1","termid":"PBO:0110117"}


id: MOD:00703
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with a group derived from an isoprene polymer, such as a geranyl (C10), farnesyl (C15) or geranylgeranyl (C20) group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkylated residue","termid":"MOD:00001"},{"relation_name":"is_a","term_name":"lipoconjugated residue","termid":"MOD:01155"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isoprenylated residue","synonyms":[{"name":"IpRes","type":"exact"}],"termid":"MOD:00703"}


id: PBO:0080437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS53 subunit of GARP complex","termid":"PBO:0080437"}


id: SO:0002292
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An mRNA that is generated by backsplicing of exons or introns, resulting in a covalently closed loop without a 5’ cap or 3’ polyA tail.","definition_xrefs":["PMID:29182528","PMID:29576969","PMID:29086764"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA","termid":"SO:0000234"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"circular_mRNA","synonyms":[{"name":"circular mRNA","type":"exact"},{"name":"coding circRNA","type":"exact"}],"termid":"SO:0002292"}


id: GO:0003941
data:
  {"annotated_genes":["SJAG_00830"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99900],"is_not":false,"summary":null,"term":"GO:0003941"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-serine = pyruvate + NH3.","definition_xrefs":["EC:4.3.1.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ammonia-lyase activity","termid":"GO:0016841"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00830":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"L-serine ammonia-lyase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:4.3.1.17-RXN","RHEA:19169"],"synonyms":[{"name":"L-hydroxyaminoacid dehydratase activity","type":"broad"},{"name":"L-serine ammonia-lyase (pyruvate-forming) activity","type":"related"},{"name":"L-serine deaminase activity","type":"exact"},{"name":"L-serine dehydratase activity","type":"broad"},{"name":"L-serine dehydration activity","type":"related"},{"name":"L-serine hydro-lyase (deaminating) activity","type":"exact"},{"name":"serine deaminase activity","type":"broad"}],"termid":"GO:0003941","terms_by_termid":{"GO:0003941":null}}


id: GO:0071444
data:
  {"annotated_genes":["SJAG_01978","SJAG_03340","SJAG_00993","SJAG_03209","SJAG_01345","SJAG_01718","SJAG_02233","SJAG_00990","SJAG_02923"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93180,88311,89441,102376,85388,92509],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071507"},{"annotations":[84315,103243],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000750"},{"annotations":[101626],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000749"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to pheromone","termid":"GO:0019236"},{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00990":null,"SJAG_00993":null,"SJAG_01345":null,"SJAG_01718":null,"SJAG_01978":null,"SJAG_02233":null,"SJAG_02923":null,"SJAG_03209":null,"SJAG_03340":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to pheromone","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cellular pheromone response","type":"exact"}],"termid":"GO:0071444","terms_by_termid":{"GO:0000749":null,"GO:0000750":null,"GO:0071507":null}}


id: PBO:0111788
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bromodomain","termid":"PBO:0111788"}


id: PATO:0001215
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001215 time_unit (obsolete PATO:0001215)","termid":"PATO:0001215"}


id: GO:0014042
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of neuron maturation.","definition_xrefs":["GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neuron maturation","termid":"GO:0014041"},{"relation_name":"is_a","term_name":"positive regulation of cell maturation","termid":"GO:1903431"},{"relation_name":"positively_regulates","term_name":"neuron maturation","termid":"GO:0042551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of neuron maturation","synonyms":[{"name":"activation of neuron maturation","type":"narrow"},{"name":"stimulation of neuron maturation","type":"narrow"},{"name":"up regulation of neuron maturation","type":"exact"},{"name":"up-regulation of neuron maturation","type":"exact"},{"name":"upregulation of neuron maturation","type":"exact"}],"termid":"GO:0014042"}


id: PBO:0038997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apoptosis enhancing nuclease","termid":"PBO:0038997"}


id: GO:1903235
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of calcium ion-dependent exocytosis of neurotransmitter.","definition_xrefs":["GOC:TermGenie","PMID:16782817","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of calcium ion-dependent exocytosis","termid":"GO:0045956"},{"relation_name":"is_a","term_name":"regulation of calcium ion-dependent exocytosis of neurotransmitter","termid":"GO:1903233"},{"relation_name":"is_a","term_name":"positive regulation of synaptic vesicle exocytosis","termid":"GO:2000302"},{"relation_name":"positively_regulates","term_name":"calcium ion-regulated exocytosis of neurotransmitter","termid":"GO:0048791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"positive regulation of calcium ion-dependent exocytosis of neurotransmitter","synonyms":[{"name":"activation of calcium ion-dependent exocytosis of neurotransmitter","type":"narrow"},{"name":"up regulation of calcium ion-dependent exocytosis of neurotransmitter","type":"exact"},{"name":"up-regulation of calcium ion-dependent exocytosis of neurotransmitter","type":"exact"},{"name":"upregulation of calcium ion-dependent exocytosis of neurotransmitter","type":"exact"}],"termid":"GO:1903235"}


id: PBO:0080313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 77 pseudogene","termid":"PBO:0080313"}


id: PR:O14218
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC6B12.13 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14218"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"type 1 phosphatases regulator ypi1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6B12.13","synonyms":[{"name":"Spom972h-SPAC6B12.13","type":"exact"}],"termid":"PR:O14218"}


id: FYPO:0008220
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the G2/M phase of the mitotic cycle in which monomethylation of lysine at position 20 of histone H4 in regions of the genome that are actively transcribed occurs to a greater extent than normal.","direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H4-K20 monomethylation during vegetative growth","termid":"FYPO:0004223"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0002494","FYPO:0002274","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased histone H4-K20 monomethylation in transcribed regions during mitotic G2/M phase","termid":"FYPO:0008220"}


id: GO:0030575
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of any of the extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins.","definition_xrefs":["GOC:mah","GOC:jl","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus organization","termid":"GO:0006997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nuclear body organization","synonyms":[{"name":"nuclear body organisation","type":"exact"},{"name":"nuclear body organization and biogenesis","type":"related"}],"termid":"GO:0030575"}


id: GO:0061402
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a pH stimulus with pH < 7.","definition_xrefs":["GOC:go_curators","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter in response to acidic pH (obsolete GO:0061402)","synonyms":[{"name":"positive regulation of transcription from RNA polymerase II promoter in response to acidity","type":"broad"}],"termid":"GO:0061402"}


id: PBO:0068886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 127, pseudogene","termid":"PBO:0068886"}


id: PBO:0032751
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"original gene was in a different frame","termid":"PBO:0032751"}


id: _global:regulates_o_transports_or_maintains_localization_of
data:
  {"annotation_feature_type":"gene","cv_name":"external","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulates_o_transports_or_maintains_localization_of","secondary_identifiers":["GOREL:0000038"],"termid":"_global:regulates_o_transports_or_maintains_localization_of"}


id: PBO:0041488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C11orf98 pseudogene 3","termid":"PBO:0041488"}


id: PBO:0005904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Glutamic acid, mitochondrial","termid":"PBO:0005904"}


id: PBO:0086984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Regulatory subunit of type 1 protein phosphatase Glc7p; involved in negative regulation of glucose-repressible genes; involved in regulation of the nucleocytoplasmic shuttling of Hxk2p; REG1 has a paralog, REG2, that arose from the whole genome duplication","termid":"PBO:0086984"}


id: PBO:0090483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-acylglycerol-3-phosphate O-acyltransferase Vps66","termid":"PBO:0090483"}


id: PBO:0066142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBAK-RBAKDN readthrough","termid":"PBO:0066142"}


id: GO:0018419
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a protein structure comprising two or more rings that are interlocked but not covalently joined; resembling the links of a chain.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"protein catenane formation","termid":"GO:0018419"}


id: GO:0160063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process of protein insertion of multi-pass membrane proteins into the endoplasmic reticulum (ER) membrane. Insertion of multi-pass membrane proteins is mediated by the multi-pass translocon complex and takes place following membrane insertion of the first few transmembrane segments of proteins by the SEC61 complex to promote insertion of subsequent transmembrane regions.","definition_xrefs":["PMID:36261528","PMID:36261522"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein insertion into ER membrane","termid":"GO:0045048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0061024"],"is_obsolete":false,"name":"multi-pass transmembrane protein insertion into ER membrane","termid":"GO:0160063"}


id: PBO:0063244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin alpha 9","termid":"PBO:0063244"}


id: PBO:0047978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FSHD region gene 1 family member E, pseudogene","termid":"PBO:0047978"}


id: FYPO:0005012
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 5 of histone H4 occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone H4 acetylation during vegetative growth","termid":"FYPO:0005011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0002494","FYPO:0001985","FYPO:0002274","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased histone H4-K5 acetylation during vegetative growth","synonyms":[{"name":"decreased histone H4-K5 acetylation during mitotic cell cycle","type":"related"},{"name":"decreased histone H4K5 acetylation during vegetative growth","type":"exact"},{"name":"reduced histone H4-K5 acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0005012"}


id: GO:0047640
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-aldose + NAD+ = D-aldonolactone + NADH.","definition_xrefs":["EC:1.1.1.121","MetaCyc:ALDOSE-1-DEHYDROGENASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"aldose 1-dehydrogenase activity","secondary_identifiers":["RHEA:15917"],"synonyms":[{"name":"D-aldose:NAD+ 1-oxidoreductase activity","type":"related"},{"name":"aldose dehydrogenase activity","type":"related"},{"name":"dehydrogenase, D-aldohexose","type":"related"}],"termid":"GO:0047640"}


id: PBO:0044009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"casein kappa","termid":"PBO:0044009"}


id: GO:0016544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process during courtship where the male insect taps the female with his frontal leg. An example of this is found in Drosophila melanogaster.","definition_xrefs":["PMID:11092827","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"male courtship behavior","termid":"GO:0008049"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"male courtship behavior, tapping to detect pheromone","synonyms":[{"name":"male courtship behavior, tapping","type":"related"},{"name":"male courtship behaviour, tapping","type":"exact"},{"name":"male courtship behaviour, tapping to detect pheromone","type":"related"}],"termid":"GO:0016544"}


id: GO:0004354
data:
  {"annotated_genes":["SJAG_03266"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[113819],"is_not":false,"summary":null,"term":"GO:0004354"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-glutamate + H2O + NADP+ = 2-oxoglutarate + NH3 + NADPH + H+.","definition_xrefs":["EC:1.4.1.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate dehydrogenase [NAD(P)+] activity","termid":"GO:0004353"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03266":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"glutamate dehydrogenase (NADP+) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:GLUTSYNIII-PWY","MetaCyc:GLUTDEHYD-RXN","RHEA:11612"],"synonyms":[{"name":"L-glutamate dehydrogenase","type":"broad"},{"name":"L-glutamate:NADP+ oxidoreductase (deaminating)","type":"related"},{"name":"L-glutamic acid dehydrogenase activity","type":"related"},{"name":"NAD(P)-glutamate dehydrogenase activity","type":"related"},{"name":"NAD(P)H-dependent glutamate dehydrogenase activity","type":"related"},{"name":"dehydrogenase, glutamate (nicotinamide adenine dinucleotide (phosphate))","type":"related"},{"name":"glutamic acid dehydrogenase","type":"broad"},{"name":"glutamic dehydrogenase activity","type":"broad"}],"termid":"GO:0004354","terms_by_termid":{"GO:0004354":null}}


id: PBO:0034349
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-derived_by_descent_from","termid":"PBO:0034349"}


id: PBO:0088776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin/importin beta family nuclear import signal receptor Kap111","termid":"PBO:0088776"}


id: PBO:0039290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALG5 dolichyl-phosphate beta-glucosyltransferase","termid":"PBO:0039290"}


id: RO:0002451
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relationship that holds between a disease and organism","direct_ancestors":[{"relation_name":"is_a","term_name":"ecologically_related_to","termid":"RO:0002321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmitted_by","termid":"RO:0002451"}


id: GO:0044105
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: xylitol + NAD+ = L-xylulose + NADH + H+.","definition_xrefs":["RHEA:68100","PMID:14736891"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"L-xylulose reductase (NADH) activity","secondary_identifiers":["EC:1.1.1.15","MetaCyc:RXN-11825"],"termid":"GO:0044105"}


id: PBO:0063136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"parvin alpha","termid":"PBO:0063136"}


id: GO:0048632
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of skeletal muscle growth.","definition_xrefs":["GOC:lm","PMID:15726494","PMID:15907921"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of skeletal muscle tissue growth","termid":"GO:0048631"},{"relation_name":"is_a","term_name":"negative regulation of developmental growth","termid":"GO:0048640"},{"relation_name":"negatively_regulates","term_name":"skeletal muscle tissue growth","termid":"GO:0048630"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of skeletal muscle tissue growth","synonyms":[{"name":"down regulation of skeletal muscle growth","type":"exact"},{"name":"down-regulation of skeletal muscle growth","type":"exact"},{"name":"downregulation of skeletal muscle growth","type":"exact"},{"name":"inhibition of skeletal muscle growth","type":"narrow"}],"termid":"GO:0048632"}


id: PBO:0074650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 40","termid":"PBO:0074650"}


id: PBO:0073792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 5 member 12","termid":"PBO:0073792"}


id: GO:0052750
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: reactive black 5 + hydrogen peroxide = oxidized reactive black 5 + 2 H2O.","definition_xrefs":["MetaCyc:RXN-8666","KEGG_REACTION:R07612"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peroxidase activity","termid":"GO:0004601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"reactive-black-5:hydrogen-peroxide oxidoreductase activity","secondary_identifiers":["EC:1.11.1.16","RHEA:22396"],"synonyms":[{"name":"versatile peroxidase activity","type":"broad"}],"termid":"GO:0052750"}


id: PBO:0043735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6C pseudogene 14","termid":"PBO:0043735"}


id: PBO:0089110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human NEDD4 family-interacting protein ortholog","termid":"PBO:0089110"}


id: PR:Q9P6R4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- msd1 gene.","definition_xrefs":["UniProtKB:Q9P6R4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 172 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC13E7.06","synonyms":[{"name":"Spom972h-msd1","type":"exact"}],"termid":"PR:Q9P6R4"}


id: GO:0103079
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-methylthio-2-oxopentanoate + acetyl-CoA + H2O = H+ + 2-(3-methylthiopropyl)malate + coenzyme A.","definition_xrefs":["EC:2.3.3.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, acyl groups converted into alkyl on transfer","termid":"GO:0046912"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"2-(3'-methylthio)propylmalate synthase activity","secondary_identifiers":["MetaCyc:RXNQT-4163","RHEA:25605"],"termid":"GO:0103079"}


id: GO:0072484
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of events in which information about spindle assembly is received and converted into a molecular signal, contributing to a spindle assembly checkpoint.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete detection of stimulus involved in spindle assembly checkpoint (obsolete GO:0072484)","synonyms":[{"name":"sensing involved in spindle assembly checkpoint","type":"related"},{"name":"spindle assembly checkpoint sensor mechanism","type":"related"},{"name":"spindle assembly checkpoint sensor process","type":"related"}],"termid":"GO:0072484"}


id: PBO:0089728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall beta-glucosidase Psu2","termid":"PBO:0089728"}


id: PBO:0065848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB11B antisense RNA 1","termid":"PBO:0065848"}


id: GO:0061321
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a garland nephrocyte. A garland nephrocyte is an insect renal cell that filters hemolymph and forms a ring with other garland nephrocytes around the esophagus. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.","definition_xrefs":["PMID:19783135","GOC:mtg_kidney_jan10","GOC:sart","GOC:dph","CL:0000486"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephrocyte differentiation","termid":"GO:0061319"},{"relation_name":"part_of","term_name":"embryonic development via the syncytial blastoderm","termid":"GO:0001700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"garland nephrocyte differentiation","secondary_identifiers":["GO:0007514"],"synonyms":[{"name":"garland cell differentiation","type":"exact"}],"termid":"GO:0061321"}


id: GO:0008662
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + D-fructose 1-phosphate = ADP + D-fructose 1,6-bisphosphate.","definition_xrefs":["EC:2.7.1.56"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphofructokinase activity","termid":"GO:0008443"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016301","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"1-phosphofructokinase activity","secondary_identifiers":["MetaCyc:1PFRUCTPHOSN-RXN","RHEA:14213"],"synonyms":[{"name":"1-phosphofructokinase (phosphorylating)","type":"related"},{"name":"ATP:D-fructose-phosphate 6-phosphotransferase activity","type":"related"},{"name":"D-fructose-1-phosphate kinase activity","type":"related"},{"name":"fructose 1-phosphate kinase activity","type":"related"},{"name":"fructose-1-phosphate kinase activity","type":"related"},{"name":"phosphofructokinase 1","type":"related"}],"termid":"GO:0008662"}


id: FYPO:0002479
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetative cell is viable and has a larger volume, and is longer, than normal. In a swollen cell, both length and diameter may be greater than normal, although the cell is only considered elongated if the length:diameter ratio is also greater than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"swollen vegetative cell","termid":"FYPO:0000646"},{"relation_name":"is_a","term_name":"elongated vegetative cell","termid":"FYPO:0001122"},{"relation_name":"is_a","term_name":"swollen elongated cell","termid":"FYPO:0001429"},{"relation_name":"is_a","term_name":"viable vegetative cell","termid":"FYPO:0001491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001985","FYPO:0000005","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"viable swollen elongated vegetative cell","synonyms":[{"name":"viable elongated cell with increased cell volume","type":"exact"},{"name":"viable enlarged elongated cell","type":"related"},{"name":"viable large elongated cell","type":"related"},{"name":"viable swollen elongated cell during vegetative growth","type":"exact"},{"name":"viable swollen elongated vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002479"}


id: MOD:01578
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a protein N-terminal with the Applied Biosystems iTRAQ8plex-121 reporter+balance group.","definition_xrefs":["Unimod:731#N-term"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iTRAQ8plex-121 reporter+balance reagent acylated residue","termid":"MOD:01577"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent acylated N-terminal","termid":"MOD:01712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ8plex-121 reporter+balance reagent acylated N-terminal","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Accurate mass for 115, 118, 119 & 121","type":"related"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"iTRAQ8plex:13C(6)15N(2)","type":"related"}],"termid":"MOD:01578"}


id: PBO:0041153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic transcription factor 3 pseudogene 8","termid":"PBO:0041153"}


id: PBO:0076331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SYS1-DBNDD2 readthrough (NMD candidate)","termid":"PBO:0076331"}


id: PBO:0080604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 38","termid":"PBO:0080604"}


id: FYECO:0000241
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Recovery from nitrogen starvation: cells are first grown in minimal medium containing no nitrogen for 28 days. This medium is then replaced with nitrogen containing minimal medium and cells are allowed to recover for 10-50 hours.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrogen starvation and recovery","termid":"FYECO:0000110"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"28 days nitrogen starvation followed by 10-50 hours recovery in minimal medium","termid":"FYECO:0000241"}


id: GO:0047183
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: anthocyanidin-3,5-diglucoside + hydroxycinnamoyl-CoA = anthocyanidin 3-glucoside-5-hydroxycinnamoylglucoside + CoA.","definition_xrefs":["MetaCyc:2.3.1.153-RXN","EC:2.3.1.153"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016746"],"is_obsolete":false,"name":"anthocyanin 5-aromatic acyltransferase activity","secondary_identifiers":["RHEA:15661","MetaCyc:RXN-7945"],"synonyms":[{"name":"hydroxycinnamoyl-CoA:anthocyanidin 3,5-diglucoside 5-O-glucoside-6'''-O-hydroxycinnamoyltransferase activity","type":"related"}],"termid":"GO:0047183"}


id: PATO:0001450
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of extracellular fluid.","definition_xrefs":["thefreedictionary.com:thefreedictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"composition","termid":"PATO:0000025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"edematous","synonyms":[{"name":"edema","type":"narrow"},{"name":"edemic","type":"exact"},{"name":"oedema","type":"narrow"},{"name":"oedematous","type":"exact"},{"name":"oedemic","type":"exact"}],"termid":"PATO:0001450"}


id: PBO:0005350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P-factor pheromone Map2","termid":"PBO:0005350"}


id: PR:O74908
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tRNA-splicing endonuclease subunit Sen54 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR21027:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-splicing endonuclease subunit sen54 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC613.09","secondary_identifiers":["UniProtKB:O74908"],"synonyms":[{"name":"SPCC613.09","type":"related"},{"name":"Spom972h-TSEN54","type":"exact"},{"name":"tRNA-intron endonuclease sen54 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74908"}


id: GO:1902198
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 3-methylbut-2-enoyl-CoA(4-).","definition_xrefs":["GOC:TermGenie","PMID:11231285"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty-acyl-CoA metabolic process","termid":"GO:0035337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006790","GO:0008150","GO:0006629","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"3-methylbut-2-enoyl-CoA(4-) metabolic process","synonyms":[{"name":"3-methylbut-2-enoyl-CoA(4-) metabolism","type":"exact"}],"termid":"GO:1902198"}


id: GO:0036309
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a protein is transported to, and/or maintained in, the M band. The M band is the midline of aligned thick filaments in a sarcomere.","definition_xrefs":["GOC:BHF","PMID:18782775","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to organelle","termid":"GO:0033365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to M-band","synonyms":[{"name":"cellular protein localization to M-band","type":"exact"},{"name":"protein localization to M disc","type":"exact"},{"name":"protein localization to M line","type":"narrow"},{"name":"protein localization to mesophragma","type":"exact"}],"termid":"GO:0036309"}


id: PBO:0011973
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae COQ2","termid":"PBO:0011973"}


id: PBO:0015663
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is not functionally complemented by S. cerevisiae CDC16","termid":"PBO:0015663"}


id: GO:0070985
data:
  {"annotated_genes":["SJAG_03618","SJAG_00150","SJAG_04614"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[102142,108191,109079],"is_not":false,"summary":null,"term":"GO:0070985"}]},"cv_name":"cellular_component","definition":"A transcription factor complex that forms part of the holo TFIIH complex. In Saccharomyces/human, TFIIK contains Ccl1p/Cyclin H, Tfb3p/MAT1 and Kin28p/CDK7.","definition_xrefs":["GOC:mah","PMID:19818408","PMID:22572993"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription regulator complex","termid":"GO:0090575"},{"relation_name":"part_of","term_name":"transcription factor TFIIH holo complex","termid":"GO:0005675"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00150":null,"SJAG_03618":null,"SJAG_04614":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005654","GO:0005575"],"is_obsolete":false,"name":"transcription factor TFIIK complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cyclin H-CDK7 complex","type":"related"},{"name":"Mcs6/Mcs2/Pmh1 complex","type":"narrow"},{"name":"TFIIK complex","type":"exact"}],"termid":"GO:0070985","terms_by_termid":{"GO:0070985":null}}


id: GO:0071785
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The organization process that preserves the endoplasmic reticulum (ER) cisternal network in a stable functional or structural state. The ER cisternal network is the ER part that comprises the membranes with low curvature in cross-section.","definition_xrefs":["PMID:16469703","PMID:20434336","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component maintenance","termid":"GO:0043954"},{"relation_name":"is_a","term_name":"endoplasmic reticulum cisternal network organization","termid":"GO:0071783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endoplasmic reticulum cisternal network maintenance","synonyms":[{"name":"ER cisternal network maintenance","type":"exact"}],"termid":"GO:0071785"}


id: GO:0007055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of the spindle during meiosis II of a meiotic cell cycle in males. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle assembly involved in male meiosis","termid":"GO:0007053"},{"relation_name":"part_of","term_name":"male meiosis II","termid":"GO:0007142"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0140013","GO:0000226","GO:0008150","GO:0044085","GO:0007010"],"is_obsolete":false,"name":"spindle assembly involved in male meiosis II","synonyms":[{"name":"male meiosis II spindle assembly","type":"related"}],"termid":"GO:0007055"}


id: GO:0061146
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a Peyer's patch is generated and organized. Peyer's patches are typically found as nodules associated with gut epithelium with distinct internal structures including B- and T-zones for the activation of lymphocytes.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue morphogenesis","termid":"GO:0048729"},{"relation_name":"part_of","term_name":"Peyer's patch development","termid":"GO:0048541"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Peyer's patch morphogenesis","termid":"GO:0061146"}


id: GO:0008068
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a chloride ion by a channel that opens when glutamate is bound by the channel complex or one of its constituent parts on the extracellular side of the plasma membrane.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellularly glutamate-gated ion channel activity","termid":"GO:0005234"},{"relation_name":"is_a","term_name":"chloride channel activity","termid":"GO:0005254"},{"relation_name":"is_a","term_name":"ligand-gated monoatomic anion channel activity","termid":"GO:0099095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"extracellularly glutamate-gated chloride channel activity","synonyms":[{"name":"extracellular-glutamate-gated chloride channel activity","type":"exact"}],"termid":"GO:0008068"}


id: PBO:0060124
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND6 pseudogene 25","termid":"PBO:0060124"}


id: GO:0002384
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An immune response taking place in the liver.","definition_xrefs":["GO_REF:0000022","GOC:jal","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organ or tissue specific immune response","termid":"GO:0002251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hepatic immune response","termid":"GO:0002384"}


id: PBO:0002027
data:
  {"annotation_feature_type":"gene","cv_name":"pathway","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"negative regulator of the Ras1-Byr2 signalling pathway, acting downstream of Ras1","termid":"PBO:0002027"}


id: PBO:0108596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 13A","termid":"PBO:0108596"}


id: PBO:0056370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase 7","termid":"PBO:0056370"}


id: PR:Q09715
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tup11 gene.","definition_xrefs":["UniProtKB:Q09715","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional repressor tup11 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC18B11.10","synonyms":[{"name":"Spom972h-tup11","type":"exact"}],"termid":"PR:Q09715"}


id: MOD:00580
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because entry removed from Unimod. Remap potentially to MOD:00579 propionaldehyde +40","definition_xrefs":["Unimod:257"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00580 propionaldehyde +42 (obsolete MOD:00580)","termid":"MOD:00580"}


id: GO:0002393
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The synthesis or release of lysosomal enzymes following a stimulus as part of a inflammatory response, resulting in an increase in intracellular or extracellular levels.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"production of molecular mediator involved in inflammatory response","termid":"GO:0002532"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lysosomal enzyme production involved in inflammatory response","synonyms":[{"name":"lysosomal enzyme production involved in acute inflammatory response","type":"broad"},{"name":"production of lysosomal enzymes involved in acute inflammatory response","type":"broad"},{"name":"production of lysosomal enzymes involved in inflammatory response","type":"exact"}],"termid":"GO:0002393"}


id: GO:0047144
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-acyl-sn-glycerol 3-phosphate + acyl-CoA = L-phosphatidate + CoA.","definition_xrefs":["GOC:ab","RHEA:14233"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"},{"relation_name":"is_a","term_name":"lysophosphatidic acid acyltransferase activity","termid":"GO:0042171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016746"],"is_obsolete":false,"name":"2-acylglycerol-3-phosphate O-acyltransferase activity","secondary_identifiers":["MetaCyc:2-ACYL2.3.1.15-RXN","Reactome:R-HSA-1482546","EC:2.3.1.52","Reactome:R-HSA-1482626","Reactome:R-HSA-1482533","Reactome:R-HSA-1482635","Reactome:R-HSA-1482691","Reactome:R-HSA-1482646"],"synonyms":[{"name":"2-acylglycerophosphate acyltransferase activity","type":"related"},{"name":"acyl-CoA:2-acyl-sn-glycerol 3-phosphate O-acyltransferase activity","type":"related"}],"termid":"GO:0047144"}


id: PBO:0083531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF SNX41","termid":"PBO:0083531"}


id: SO:0002140
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An origin of replication that initiates early in S phase.","definition_xrefs":["PMID:23348837","PMID:9115207"],"direct_ancestors":[{"relation_name":"is_a","term_name":"origin_of_replication","termid":"SO:0000296"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"early_origin_of_replication","synonyms":[{"name":"early origin","type":"exact"},{"name":"early origin of replication","type":"exact"},{"name":"early replication origin","type":"exact"}],"termid":"SO:0002140"}


id: PBO:0052726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 18","termid":"PBO:0052726"}


id: PBO:0058191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4484","termid":"PBO:0058191"}


id: GO:0010950
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of peptidase activity","termid":"GO:0010952"},{"relation_name":"is_a","term_name":"regulation of endopeptidase activity","termid":"GO:0052548"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of endopeptidase activity","termid":"GO:0010950"}


id: GO:0044135
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The increase in size or mass of symbiont occurring on or near its host phyllosphere. The host phyllosphere is defined as total above-ground surfaces of a plant as a habitat for symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:jl","GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete growth of symbiont on or near host phyllosphere (obsolete GO:0044135)","termid":"GO:0044135"}


id: PR:A6X980
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sfc7 gene.","definition_xrefs":["UniProtKB:A6X980","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor tau subunit sfc7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1250.07","synonyms":[{"name":"Spom972h-sfc7","type":"exact"},{"name":"TFIIIC subunit sfc7 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"transcription factor C subunit 7 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:A6X980"}


id: SO:1000026
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transversion from guanine to cytidine.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine_to_pyrimidine_transversion","termid":"SO:1000023"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G_to_C_transversion","synonyms":[{"name":"G to C transversion","type":"exact"}],"termid":"SO:1000026"}


id: PBO:0034560
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_binding_during_mitotic_S_phase","termid":"PBO:0034560"}


id: GO:0000481
data:
  {"annotated_genes":["SJAG_04433"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85688],"is_not":false,"summary":null,"term":"GO:0000481"}]},"cv_name":"biological_process","definition":"Any process involved in the maturation of a precursor 5S ribosomal RNA (rRNA) molecule into a mature 5S rRNA molecule.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA processing","termid":"GO:0006364"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04433":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0042254"}],"interesting_parent_ids":["GO:0044085","GO:0010467","GO:0008150","GO:0042254"],"is_obsolete":false,"name":"maturation of 5S rRNA","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0000481","terms_by_termid":{"GO:0000481":null}}


id: GO:1900225
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of NLRP3 inflammasome complex assembly.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein-containing complex assembly","termid":"GO:0043254"},{"relation_name":"part_of","term_name":"regulation of inflammasome-mediated signaling pathway","termid":"GO:0141085"},{"relation_name":"regulates","term_name":"NLRP3 inflammasome complex assembly","termid":"GO:0044546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0065003"],"is_obsolete":false,"name":"regulation of NLRP3 inflammasome complex assembly","synonyms":[{"name":"regulation of NALP3 inflammasome complex assembly","type":"exact"},{"name":"regulation of NLRP3 inflammasome activation","type":"related"}],"termid":"GO:1900225"}


id: GO:0120200
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The outer segment of a vertebrate rod photoreceptor that contains sealed membrane discs that are not connected to the ciliary membrane and containing rhodopsin photoreceptor proteins.","definition_xrefs":["GOC:krc","GOC:pde","PMID:19501669","PMID:26574505","PMID:6771304"],"direct_ancestors":[{"relation_name":"is_a","term_name":"photoreceptor outer segment","termid":"GO:0001750"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"rod photoreceptor outer segment","termid":"GO:0120200"}


id: PBO:0073210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"semaphorin 4B","termid":"PBO:0073210"}


id: PR:O94256
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- set6 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94256"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET domain and MYND-type zinc finger protein 6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP8B7.07c","synonyms":[{"name":"Spom972h-set6","type":"exact"}],"termid":"PR:O94256"}


id: PBO:0045323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dedicator of cytokinesis 3","termid":"PBO:0045323"}


id: GO:0072740
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an anisomycin stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to organonitrogen compound","termid":"GO:0071417"},{"relation_name":"is_a","term_name":"response to anisomycin","termid":"GO:0072739"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to anisomycin","termid":"GO:0072740"}


id: PBO:0048096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin light chain pseudogene 17","termid":"PBO:0048096"}


id: GO:0160093
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of cordate pharynx over time, from its formation to the mature structure.","definition_xrefs":["PMID:23020903"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pharynx development","termid":"GO:0060465"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chordate pharynx development","termid":"GO:0160093"}


id: GO:0072245
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a metanephric glomerular parietal epithelial cell. Metanephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerular parietal epithelial cell differentiation","termid":"GO:0072139"},{"relation_name":"is_a","term_name":"metanephric glomerular epithelial cell differentiation","termid":"GO:0072312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric glomerular parietal epithelial cell differentiation","termid":"GO:0072245"}


id: GO:0003080
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or decreases the frequency, rate, or extent of natriuresis, the process of renal sodium excretion.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of natriuresis (obsolete GO:0003080)","synonyms":[{"name":"negative regulation of natriuresis","type":"exact"}],"termid":"GO:0003080"}


id: GO:0030401
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Functions to prevent the termination of RNA synthesis. Acts as a regulatory device, e.g. in phage lambda, enabling a terminator to be masked from RNA polymerase so that distal genes can be expressed.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete transcription antiterminator activity (obsolete GO:0030401)","synonyms":[{"name":"transcription antiterminator activity","type":"exact"},{"name":"transcriptional antiterminator activity","type":"exact"}],"termid":"GO:0030401"}


id: PBO:0068128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 435","termid":"PBO:0068128"}


id: PBO:0047400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FBXO38 divergent transcript","termid":"PBO:0047400"}


id: PBO:0091192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ile","termid":"PBO:0091192"}


id: PBO:0071476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32 pseudogene 17","termid":"PBO:0071476"}


id: FYPO:0004003
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which replication fork processing begins later than normal. Replication fork processing is process in which a DNA replication fork that has stalled (due to DNA damage, DNA secondary structure, bound proteins, dNTP shortage, or other causes) is repaired and replication is restarted.","definition_xrefs":["GO:0031297","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal replication fork processing","termid":"FYPO:0003586"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000293"],"is_obsolete":false,"name":"delayed onset of replication fork processing","synonyms":[{"name":"delayed onset of recovery from replication fork stalling","type":"exact"},{"name":"delayed onset of collapsed replication fork processing","type":"exact"},{"name":"delayed onset of recovery from replication fork arrest","type":"exact"},{"name":"delayed onset of replication fork processing during mitotic cell cycle","type":"related"},{"name":"delayed onset of replication fork processing during vegetative growth","type":"exact"},{"name":"delayed onset of replication fork restart","type":"related"},{"name":"delayed onset of replication restart","type":"related"},{"name":"delayed replication fork processing","type":"exact"}],"termid":"FYPO:0004003"}


id: PBO:0055066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2482","termid":"PBO:0055066"}


id: PBO:0031206
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_calcium_ion","termid":"PBO:0031206"}


id: PBO:0091414
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human XPO1","termid":"PBO:0091414"}


id: PBO:0040490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATXN7L3 pseudogene 1","termid":"PBO:0040490"}


id: PBO:0049319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GS homeobox 1","termid":"PBO:0049319"}


id: GO:0047844
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: deoxycytidine + H2O = deoxyuridine + NH3.","definition_xrefs":["EC:3.5.4.14","MetaCyc:DEOXYCYTIDINE-DEAMINASE-RXN"],"gene_count":0,"genotype_count":0,"name":"obsolete deoxycytidine deaminase activity (obsolete GO:0047844)","synonyms":[{"name":"deoxycytidine aminohydrolase activity","type":"related"}],"termid":"GO:0047844"}


id: GO:0045970
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of juvenile hormone.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular catabolic process","termid":"GO:0031330"},{"relation_name":"is_a","term_name":"negative regulation of juvenile hormone metabolic process","termid":"GO:0045928"},{"relation_name":"is_a","term_name":"regulation of juvenile hormone catabolic process","termid":"GO:0045952"},{"relation_name":"is_a","term_name":"negative regulation of lipid catabolic process","termid":"GO:0050995"},{"relation_name":"negatively_regulates","term_name":"juvenile hormone catabolic process","termid":"GO:0006719"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0019748","GO:0044248","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"negative regulation of juvenile hormone catabolic process","synonyms":[{"name":"down regulation of juvenile hormone catabolic process","type":"exact"},{"name":"down-regulation of juvenile hormone catabolic process","type":"exact"},{"name":"downregulation of juvenile hormone catabolic process","type":"exact"},{"name":"inhibition of juvenile hormone catabolic process","type":"narrow"},{"name":"negative regulation of juvenile hormone breakdown","type":"exact"},{"name":"negative regulation of juvenile hormone catabolism","type":"exact"},{"name":"negative regulation of juvenile hormone degradation","type":"exact"}],"termid":"GO:0045970"}


id: PATO:0000294
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000294 process value (obsolete PATO:0000294)","termid":"PATO:0000294"}


id: PR:O74438
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mcp2 gene.","definition_xrefs":["UniProtKB:O74438","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic coiled-coil protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1682.08c","synonyms":[{"name":"Spom972h-mcp2","type":"exact"}],"termid":"PR:O74438"}


id: PBO:0076328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptophysin like 1 pseudogene 2","termid":"PBO:0076328"}


id: PBO:0031683
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_rate_of_peroxisome_degradation","termid":"PBO:0031683"}


id: RO:0002150
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"X continuous_with Y if and only if X and Y share a fiat boundary.","direct_ancestors":[{"relation_name":"is_a","term_name":"mereotopologically_related_to","termid":"RO:0002323"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"continuous_with","termid":"RO:0002150"}


id: PBO:0086823
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; YNL018C has a paralog, YNL034W, that arose from a segmental duplication","termid":"PBO:0086823"}


id: PBO:0073909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC16A1 antisense RNA 1","termid":"PBO:0073909"}


id: FYPO:0005717
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is normal (i.e. indistinguishable from wild type) during mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein kinase activity","termid":"FYPO:0003075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000652","FYPO:0000654"],"is_obsolete":false,"name":"normal protein kinase activity during mitosis","synonyms":[{"name":"normal protein kinase activity during mitotic M phase","type":"related"},{"name":"normal protein kinase activity during mitotic M-phase","type":"related"}],"termid":"FYPO:0005717"}


id: GO:1900154
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of bone trabecula formation.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"regulates","term_name":"bone trabecula formation","termid":"GO:0060346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of bone trabecula formation","synonyms":[{"name":"regulation of bone trabecula biogenesis","type":"related"},{"name":"regulation of bone trabeculation","type":"exact"},{"name":"regulation of skeletal trabecula biogenesis","type":"related"},{"name":"regulation of skeletal trabecula formation","type":"exact"},{"name":"regulation of skeletal trabeculation","type":"exact"}],"termid":"GO:1900154"}


id: FYPO:0000909
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to linear elements is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to nucleus during meiosis","termid":"FYPO:0002957"},{"relation_name":"is_a","term_name":"abnormal protein localization during meiosis","termid":"FYPO:0003549"},{"relation_name":"is_a","term_name":"abnormal protein localization to chromosome","termid":"FYPO:0004996"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"abnormal protein localization to linear element","synonyms":[{"name":"abnormal protein localisation to linear element","type":"exact"}],"termid":"FYPO:0000909"}


id: PR:O14075
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glyoxylate/hydroxypyruvate reductase B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01215"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-hydroxyacid dehydrogenase UNK4.10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPACUNK4.10","secondary_identifiers":["UniProtKB:O14075"],"synonyms":[{"name":"Spom972h-ghrB","type":"exact"}],"termid":"PR:O14075"}


id: FYPO:0000500
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of mitophagy is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitophagy","termid":"FYPO:0007590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased mitophagy","synonyms":[{"name":"decreased autophagy of mitochondrion","type":"exact"},{"name":"mitophagy: decreased","type":"related"},{"name":"reduced mitophagy","type":"exact"}],"termid":"FYPO:0000500"}


id: PATO:0001099
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001099 relative force (obsolete PATO:0001099)","termid":"PATO:0001099"}


id: FYPO:0002414
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is inviable and has a larger volume than normal. In a swollen cell, both length and diameter may be greater than normal, although the cell is only considered elongated if the length:diameter ratio is also greater than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"swollen vegetative cell","termid":"FYPO:0000646"},{"relation_name":"has_part","term_name":"inviable vegetative cell","termid":"FYPO:0001489"},{"relation_name":"is_a","term_name":"swollen vegetative cell","termid":"FYPO:0000646"},{"relation_name":"is_a","term_name":"inviable vegetative cell","termid":"FYPO:0001489"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000005","FYPO:0001320","FYPO:0000004","FYPO:0001985"],"is_obsolete":false,"name":"inviable swollen vegetative cell","synonyms":[{"name":"inviable enlarged vegetative cell","type":"related"},{"name":"inviable large vegetative cell","type":"related"},{"name":"inviable swollen cell during vegetative growth","type":"exact"},{"name":"inviable swollen vegetative cell during mitotic cell cycle","type":"related"},{"name":"inviable vegetative cell with increased cell size","type":"related"},{"name":"inviable vegetative cell with increased cell volume","type":"exact"},{"name":"lethal; swollen vegetative cell","type":"exact"}],"termid":"FYPO:0002414"}


id: PBO:0084000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycerol-3-phosphate/dihydroxyacetone phosphate sn-1 acyltransferase; located in lipid particles and the ER; involved in the stepwise acylation of glycerol-3-phosphate and dihydroxyacetone in lipid biosynthesis; the most conserved motifs and functionally relevant residues are oriented towards the ER lumen","termid":"PBO:0084000"}


id: PBO:0035723
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_glycosylation_during_vegetative_growth","termid":"PBO:0035723"}


id: PBO:0080003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 12","termid":"PBO:0080003"}


id: PBO:0026778
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_haploidization_during_cellular_response_to_UV","termid":"PBO:0026778"}


id: PBO:0109347
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBM8A pseudogene 1","termid":"PBO:0109347"}


id: PBO:0045149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein axonemal heavy chain 7","termid":"PBO:0045149"}


id: PBO:0045291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynamin 1 pseudogene 43","termid":"PBO:0045291"}


id: PBO:0029581
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_pigment_accumulation_during_cellular_response_to_caffeine","termid":"PBO:0029581"}


id: GO:0016362
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with activin to initiate a change in cell activity; upon ligand binding, binds to and catalyses the phosphorylation of a type I activin receptor.","definition_xrefs":["GOC:mah","PMID:8622651"],"direct_ancestors":[{"relation_name":"is_a","term_name":"activin receptor activity","termid":"GO:0017002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140096","GO:0016740","GO:0003824","GO:0004672","GO:0038023","GO:0016301","GO:0003674"],"is_obsolete":false,"name":"activin receptor activity, type II","secondary_identifiers":["Reactome:R-HSA-201443"],"synonyms":[{"name":"type II activin receptor activity","type":"exact"}],"termid":"GO:0016362"}


id: PBO:0064155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A1 member A","termid":"PBO:0064155"}


id: GO:1904279
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase V.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:24726328"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA-templated transcription","termid":"GO:0006355"},{"relation_name":"regulates","term_name":"transcription by RNA polymerase V","termid":"GO:0001060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006355"}],"interesting_parent_ids":["GO:0006355","GO:0010467","GO:0006351","GO:0008150"],"is_obsolete":false,"name":"regulation of transcription by RNA polymerase V","synonyms":[{"name":"regulation of transcription from RNA pol V promoter","type":"exact"},{"name":"regulation of transcription from RNA polymerase V promoter","type":"exact"}],"termid":"GO:1904279"}


id: PBO:0046788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enhancer of zeste 2 polycomb repressive complex 2 subunit pseudogene 1","termid":"PBO:0046788"}


id: PBO:0065511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline-serine-threonine phosphatase interacting protein 1","termid":"PBO:0065511"}


id: FYPO:0008068
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing at the silent mating-type cassettes is observed over an increased portion of the mating-type region.","definition_xrefs":["PMID:18030666"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased chromatin silencing at silent mating-type cassette","termid":"FYPO:0004376"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0006551","FYPO:0001320"],"is_obsolete":false,"name":"increased spatial extent of chromatin silencing at silent mating-type cassette","termid":"FYPO:0008068"}


id: GO:0106099
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction 2-dehydro-3-deoxy-L-rhamnonate = pyruvate + (S)-lactaldehyde.","definition_xrefs":["EC:4.1.2.53","GOC:imk","PMID:18754683"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"2-keto-3-deoxy-L-rhamnonate aldolase activity","secondary_identifiers":["RHEA:25784"],"termid":"GO:0106099"}


id: PBO:0075313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"suppressor of cytokine signaling 5 pseudogene 5","termid":"PBO:0075313"}


id: PBO:0111871
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OB fold","termid":"PBO:0111871"}


id: PBO:0083285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; partially overlaps the verified genes STE18 and ECM2","termid":"PBO:0083285"}


id: GO:0009249
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The lipoylation of peptidyl-lysine to form peptidyl-N6-lipoyl-L-lysine.","definition_xrefs":["RESID:AA0118"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-lysine modification","termid":"GO:0018205"},{"relation_name":"is_a","term_name":"protein maturation","termid":"GO:0051604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0051604"],"is_obsolete":false,"name":"protein lipoylation","secondary_identifiers":["GO:0018055"],"synonyms":[{"name":"peptidyl-lysine lipoylation","type":"exact"},{"name":"protein-lipoic acid cofactor linkage","type":"exact"}],"termid":"GO:0009249"}


id: FYPO:0002183
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which all cells in a population are inviable, and the population includes a mixture of ungerminated spores, germinated spores and cells with normal morphology (i.e. size, shape, and structure). The cells with normal morphology arise from division of some of the germinated spores, and may form a microcolony of up to 64 cells.","definition_xrefs":["PomBase:mah","PomBase:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable mixed population including spores, germinated spores and cells with normal morphology (obsolete FYPO:0002183)","termid":"FYPO:0002183"}


id: PBO:0072916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scavenger receptor class B member 1","termid":"PBO:0072916"}


id: GO:0051064
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: dTTP + thioredoxin disulfide + H2O = TTP + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin.","definition_xrefs":["MetaCyc:1.17.4.2-RXN"],"gene_count":0,"genotype_count":0,"name":"obsolete TTP reductase activity (obsolete GO:0051064)","synonyms":[{"name":"TTP reduction","type":"related"}],"termid":"GO:0051064"}


id: PBO:0090428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTREC (exosome adaptor) complex RNA-binding subunit Rmn1","termid":"PBO:0090428"}


id: GO:1903744
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of anterograde synaptic vesicle transport.","definition_xrefs":["GOC:TermGenie","PMID:25329901","GOC:kmv","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of vesicle transport along microtubule","termid":"GO:1901610"},{"relation_name":"is_a","term_name":"positive regulation of synaptic vesicle transport","termid":"GO:1902805"},{"relation_name":"is_a","term_name":"regulation of anterograde synaptic vesicle transport","termid":"GO:1903742"},{"relation_name":"positively_regulates","term_name":"anterograde synaptic vesicle transport","termid":"GO:0048490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of anterograde synaptic vesicle transport","synonyms":[{"name":"activation of anterograde synaptic vesicle transport","type":"narrow"},{"name":"up regulation of anterograde synaptic vesicle transport","type":"exact"},{"name":"up-regulation of anterograde synaptic vesicle transport","type":"exact"},{"name":"upregulation of anterograde synaptic vesicle transport","type":"exact"}],"termid":"GO:1903744"}


id: GO:0071364
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an epidermal growth factor stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to epidermal growth factor","termid":"GO:0070849"},{"relation_name":"is_a","term_name":"cellular response to growth factor stimulus","termid":"GO:0071363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to epidermal growth factor stimulus","synonyms":[{"name":"cellular response to EGF stimulus","type":"exact"}],"termid":"GO:0071364"}


id: GO:0015558
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of p-aminobenzoyl-glutamate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters. p-aminobenzoyl-glutamate is the anion of p-aminobenzoyl-glutamic acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid transmembrane transporter activity","termid":"GO:0005310"},{"relation_name":"is_a","term_name":"secondary active transmembrane transporter activity","termid":"GO:0015291"},{"relation_name":"is_a","term_name":"dipeptide transmembrane transporter activity","termid":"GO:0071916"},{"relation_name":"is_a","term_name":"modified amino acid transmembrane transporter activity","termid":"GO:0072349"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"secondary active p-aminobenzoyl-glutamate transmembrane transporter activity","secondary_identifiers":["GO:0015569"],"synonyms":[{"name":"p-aminobenzoyl-glutamate transmembrane transporter activity","type":"narrow"},{"name":"p-aminobenzoyl-glutamate transporter activity","type":"related"},{"name":"p-aminobenzoyl-glutamate uptake permease activity","type":"related"},{"name":"p-aminobenzoyl-glutamate uptake transmembrane transporter activity","type":"related"}],"termid":"GO:0015558"}


id: PBO:0043401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytidine/uridine monophosphate kinase 1","termid":"PBO:0043401"}


id: GO:0043864
data:
  {"annotated_genes":["SJAG_02721","SJAG_01987"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[58970,96461],"is_not":false,"summary":null,"term":"GO:0043864"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: indole-3-acetamide + H2O = indole-3-acetate + NH3. Indole-3-acetamide is known as IAM and indole-3-acetate as IAA.","definition_xrefs":["GOC:jl","RHEA:34371"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01987":null,"SJAG_02721":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016810","GO:0003674"],"is_obsolete":false,"name":"indoleacetamide hydrolase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:G-5841","EC:3.5.1.4"],"synonyms":[{"name":"IAH","type":"exact"},{"name":"IaaH","type":"related"},{"name":"Tms2","type":"related"},{"name":"indole acetamide hydrolase activity","type":"exact"},{"name":"indole-3-acetamide hydrolase activity","type":"exact"}],"termid":"GO:0043864","terms_by_termid":{"GO:0043864":null}}


id: GO:0006896
data:
  {"annotated_genes":["SJAG_03756","SJAG_03347","SJAG_01488","SJAG_01324","SJAG_02912","SJAG_02587","SJAG_03072","SJAG_00916","SJAG_01645","SJAG_04931","SJAG_01809","SJAG_04902","SJAG_04023","SJAG_02453","SJAG_03137","SJAG_00108","SJAG_03848","SJAG_02240","SJAG_03963","SJAG_03726","SJAG_02811"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85072,86724,88410,90317,91915,92263,93011,93285,95630,96026,97563,100183,103478,104792,104906,105286,105915,106375,107605,113633,114951],"is_not":false,"summary":null,"term":"GO:0006896"}]},"cv_name":"biological_process","definition":"The directed movement of substances from the Golgi to the vacuole.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-Golgi vesicle-mediated transport","termid":"GO:0006892"},{"relation_name":"is_a","term_name":"vacuolar transport","termid":"GO:0007034"}],"gene_count":21,"genes_by_uniquename":{"SJAG_00108":null,"SJAG_00916":null,"SJAG_01324":null,"SJAG_01488":null,"SJAG_01645":null,"SJAG_01809":null,"SJAG_02240":null,"SJAG_02453":null,"SJAG_02587":null,"SJAG_02811":null,"SJAG_02912":null,"SJAG_03072":null,"SJAG_03137":null,"SJAG_03347":null,"SJAG_03726":null,"SJAG_03756":null,"SJAG_03848":null,"SJAG_03963":null,"SJAG_04023":null,"SJAG_04902":null,"SJAG_04931":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"Golgi to vacuole transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Golgi to vacuole vesicle-mediated transport","type":"exact"}],"termid":"GO:0006896","terms_by_termid":{"GO:0006896":null}}


id: PBO:0034209
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-differs_in_attribute_of","termid":"PBO:0034209"}


id: PR:Q9P7P1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ker1 gene.","definition_xrefs":["UniProtKB:Q9P7P1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase I subunit rpa14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1718.03","synonyms":[{"name":"DNA-directed RNA polymerase I 17 kDa polypeptide (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNA polymerase I subunit A14 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ker1","type":"exact"},{"name":"nucleolar protein ker1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7P1"}


id: PBO:0068502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 89, pseudogene","termid":"PBO:0068502"}


id: GO:0052356
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of chitin in the symbiont cell wall. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:11085997"],"gene_count":0,"genotype_count":0,"name":"obsolete catabolism by host of symbiont cell wall chitin (obsolete GO:0052356)","termid":"GO:0052356"}


id: GO:0030566
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Specifies the site of a posttranscriptional modification in an snRNA molecule by base pairing with a short sequence around the target residue.","definition_xrefs":["GOC:mah","PMID:12457565"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snRNA binding","termid":"GO:0017069"},{"relation_name":"is_a","term_name":"RNA modification guide activity","termid":"GO:0030555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003723","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"snRNA modification guide activity","termid":"GO:0030566"}


id: FYPO:0001145
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of Man9GlcNAc2 measured in a cell is higher than normal. Man9GlcNAc2 is any N-glycan that consists of a branched undecasaccharide consisting of nine D-mannosyl residues and two N-acetylglucosamine residues.","definition_xrefs":["PMID:12686557","CHEBI:59579","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased polysaccharide level during vegetative growth","termid":"FYPO:0001083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased Man9GlcNAc level","synonyms":[{"name":"increased Man9GlcNAc accumulation","type":"related"},{"name":"increased Man9GlcNAc level during mitotic cell cycle","type":"related"},{"name":"increased Man9GlcNAc level during vegetative growth","type":"exact"},{"name":"increased Man9GlcNAc2 level","type":"exact"},{"name":"increased cellular Man9GlcNAc level","type":"exact"}],"termid":"FYPO:0001145"}


id: PATO:0001911
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting movement in a circular course.","definition_xrefs":["PATOC:mb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"movement behavioral quality","termid":"PATO:0002076"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"circling","termid":"PATO:0001911"}


id: SO:0001576
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that changes the structure of the transcript.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene_variant","termid":"SO:0001564"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcript_variant","secondary_identifiers":["http://snpeff.sourceforge.net/SnpEff_manual.html"],"synonyms":[{"name":"Jannovar:transcript_variant","type":"exact"},{"name":"VAAST:transcript_variant","type":"exact"},{"name":"snpEff:TRANSCRIPT","type":"exact"},{"name":"transcript variant","type":"exact"}],"termid":"SO:0001576"}


id: GO:0006528
data:
  {"annotated_genes":["SJAG_00881","SJAG_04549","SJAG_00714","SJAG_02832","SJAG_02276"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91079],"is_not":false,"summary":null,"term":"GO:0006528"},{"annotations":[106904,98280],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006529"},{"annotations":[107922],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019266"},{"annotations":[102089],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006530"},{"annotations":[98281],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070981"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving asparagine, 2-amino-3-carbamoylpropanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aspartate family amino acid metabolic process","termid":"GO:0009066"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00714":null,"SJAG_00881":null,"SJAG_02276":null,"SJAG_02832":null,"SJAG_04549":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"asparagine metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:ASPARAGINESYN-PWY"],"synonyms":[{"name":"asparagine metabolism","type":"exact"}],"termid":"GO:0006528","terms_by_termid":{"GO:0006528":null,"GO:0006529":null,"GO:0006530":null,"GO:0019266":null,"GO:0070981":null}}


id: PBO:0081425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 280C","termid":"PBO:0081425"}


id: GO:0061301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the vasculature of the cerebellum is generated and organized.","definition_xrefs":["GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"cerebellum development","termid":"GO:0021549"},{"relation_name":"part_of","term_name":"cerebellum vasculature development","termid":"GO:0061300"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellum vasculature morphogenesis","termid":"GO:0061301"}


id: GO:0018446
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pinocarveol = pinocarvone + 2 H+ + 2 e-.","definition_xrefs":["UM-BBD_reactionID:r0717"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"pinocarveol dehydrogenase activity","termid":"GO:0018446"}


id: PBO:0084214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Homodimeric subunit of autophagy-specific PtdIns-3-kinase complex I; required for the integrity of the active PtdIns-3-kinase complex I by maintaining an association between Vps15p-Vps34p and Atg14p-Vps30p subcomplexes; localizes to the pre-autophagosomal structure (PAS) in an Atg14p-dependent manner; ATG38 is non-essential but is required for macroautophagy","termid":"PBO:0084214"}


id: PBO:0027621
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_caffeine_and_hydroxyurea","termid":"PBO:0027621"}


id: GO:0072508
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involved in the maintenance of an internal steady state of trivalent cations within an organism or cell.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete trivalent inorganic cation homeostasis (obsolete GO:0072508)","termid":"GO:0072508"}


id: GO:0003053
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism modulates its heart rate at different values with a regularity of approximately 24 hours.","definition_xrefs":["GOC:mtg_cardio","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of heart rate","termid":"GO:0002027"},{"relation_name":"is_a","term_name":"circadian rhythm","termid":"GO:0007623"},{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"circadian regulation of heart rate","synonyms":[{"name":"circadian regulation of heart contraction rate","type":"related"}],"termid":"GO:0003053"}


id: GO:0050657
data:
  {"annotated_genes":["SJAG_03693","SJAG_04472","SJAG_01449","SJAG_04115","SJAG_02274","SJAG_02661","SJAG_03986","SJAG_01185","SJAG_00093","SJAG_01374","SJAG_03283","SJAG_03002","SJAG_04148","SJAG_05328","SJAG_01715","SJAG_04480","SJAG_02757","SJAG_02534","SJAG_04622","SJAG_01529","SJAG_04083","SJAG_04536","SJAG_04347","SJAG_03300","SJAG_02425","SJAG_02520","SJAG_04645","SJAG_00178","SJAG_04656","SJAG_00298","SJAG_03156","SJAG_01584","SJAG_01534","SJAG_01065","SJAG_03299","SJAG_03593","SJAG_03358","SJAG_01013","SJAG_01083","SJAG_00992","SJAG_04202","SJAG_03470","SJAG_04017","SJAG_04379","SJAG_02704","SJAG_01467","SJAG_04310","SJAG_04589","SJAG_02209","SJAG_00471","SJAG_01652","SJAG_00375","SJAG_04721","SJAG_03847","SJAG_03729","SJAG_00641"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93233,110997,99113,85637,86758,97266,101482,111610,100061,113352,113478,85163],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006406"},{"annotations":[112525],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031990"},{"annotations":[59097,63805,58010],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051028"},{"annotations":[105970,102265,111611,104804,107859,98765,88318,87093,92667,112421,98864,112527,93081,101846,111904,109360,97981,97507,112674,100062,114097,106537,68865,111095,112162,110564,103744,98083,114992,107226],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016973"},{"annotations":[85173,92257,101157,90119,91109,92639,96535],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006405"},{"annotations":[98674],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006404"},{"annotations":[85506,101373,101848,109642,108106],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006409"},{"annotations":[95659],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016031"},{"annotations":[109643],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071528"}]},"cv_name":"biological_process","definition":"The directed movement of nucleic acids, single or double-stranded polynucleotides involved in the storage, transmission and transfer of genetic information, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleobase-containing compound transport","termid":"GO:0015931"}],"gene_count":56,"genes_by_uniquename":{"SJAG_00093":null,"SJAG_00178":null,"SJAG_00298":null,"SJAG_00375":null,"SJAG_00471":null,"SJAG_00641":null,"SJAG_00992":null,"SJAG_01013":null,"SJAG_01065":null,"SJAG_01083":null,"SJAG_01185":null,"SJAG_01374":null,"SJAG_01449":null,"SJAG_01467":null,"SJAG_01529":null,"SJAG_01534":null,"SJAG_01584":null,"SJAG_01652":null,"SJAG_01715":null,"SJAG_02209":null,"SJAG_02274":null,"SJAG_02425":null,"SJAG_02520":null,"SJAG_02534":null,"SJAG_02661":null,"SJAG_02704":null,"SJAG_02757":null,"SJAG_03002":null,"SJAG_03156":null,"SJAG_03283":null,"SJAG_03299":null,"SJAG_03300":null,"SJAG_03358":null,"SJAG_03470":null,"SJAG_03593":null,"SJAG_03693":null,"SJAG_03729":null,"SJAG_03847":null,"SJAG_03986":null,"SJAG_04017":null,"SJAG_04083":null,"SJAG_04115":null,"SJAG_04148":null,"SJAG_04202":null,"SJAG_04310":null,"SJAG_04347":null,"SJAG_04379":null,"SJAG_04472":null,"SJAG_04480":null,"SJAG_04536":null,"SJAG_04589":null,"SJAG_04622":null,"SJAG_04645":null,"SJAG_04656":null,"SJAG_04721":null,"SJAG_05328":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"nucleic acid transport","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"termid":"GO:0050657","terms_by_termid":{"GO:0006404":null,"GO:0006405":null,"GO:0006406":null,"GO:0006409":null,"GO:0016031":null,"GO:0016973":null,"GO:0031990":null,"GO:0051028":null,"GO:0071528":null}}


id: GO:0035903
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of being rendered immobile.","definition_xrefs":["GOC:bf","PMID:17683801","PMID:19893991"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to stress","termid":"GO:0033554"},{"relation_name":"is_a","term_name":"response to immobilization stress","termid":"GO:0035902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to immobilization stress","synonyms":[{"name":"cellular response to immobilisation stress","type":"exact"},{"name":"cellular response to restraint stress","type":"related"}],"termid":"GO:0035903"}


id: PBO:0043746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 7B2","termid":"PBO:0043746"}


id: FYPO:0004501
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the rate and occurrence of DNA polymerase processivity factor activity are normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal molecular function","termid":"FYPO:0000706"},{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000652"],"is_obsolete":false,"name":"normal DNA polymerase processivity factor activity","termid":"FYPO:0004501"}


id: GO:0016550
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The insertion into or deletion from an RNA molecule of nucleotide residues not encoded in DNA; takes place during or after transcription.","definition_xrefs":["PMID:11092837"],"gene_count":0,"genotype_count":0,"name":"obsolete insertion or deletion editing (obsolete GO:0016550)","synonyms":[{"name":"insertion or deletion editing","type":"exact"},{"name":"insertion/deletion editing","type":"exact"}],"termid":"GO:0016550"}


id: PBO:0078829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Pro (anticodon AGG) 6-1","termid":"PBO:0078829"}


id: PBO:0048673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactosidase beta 1 like 3","termid":"PBO:0048673"}


id: GO:1902216
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of interleukin-4-mediated signaling pathway.","definition_xrefs":["PMID:17210636","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine-mediated signaling pathway","termid":"GO:0001961"},{"relation_name":"is_a","term_name":"regulation of interleukin-4-mediated signaling pathway","termid":"GO:1902214"},{"relation_name":"positively_regulates","term_name":"interleukin-4-mediated signaling pathway","termid":"GO:0035771"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of interleukin-4-mediated signaling pathway","synonyms":[{"name":"activation of IL-4-mediated signaling pathway","type":"narrow"},{"name":"activation of interleukin-4-mediated signaling pathway","type":"narrow"},{"name":"activation of interleukin-4-mediated signalling pathway","type":"narrow"},{"name":"positive regulation of IL-4-mediated signaling pathway","type":"exact"},{"name":"positive regulation of interleukin-4-mediated signalling pathway","type":"exact"},{"name":"up regulation of IL-4-mediated signaling pathway","type":"exact"},{"name":"up regulation of interleukin-4-mediated signaling pathway","type":"exact"},{"name":"up regulation of interleukin-4-mediated signalling pathway","type":"exact"},{"name":"up-regulation of IL-4-mediated signaling pathway","type":"exact"},{"name":"up-regulation of interleukin-4-mediated signaling pathway","type":"exact"},{"name":"up-regulation of interleukin-4-mediated signalling pathway","type":"exact"},{"name":"upregulation of IL-4-mediated signaling pathway","type":"exact"},{"name":"upregulation of interleukin-4-mediated signaling pathway","type":"exact"},{"name":"upregulation of interleukin-4-mediated signalling pathway","type":"exact"}],"termid":"GO:1902216"}


id: GO:1902123
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of (-)-pinoresinol.","definition_xrefs":["PMID:15949826","PMID:9872995","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound catabolic process","termid":"GO:0019336"},{"relation_name":"is_a","term_name":"lignan catabolic process","termid":"GO:0046273"},{"relation_name":"is_a","term_name":"ether catabolic process","termid":"GO:1901502"},{"relation_name":"is_a","term_name":"(-)-pinoresinol metabolic process","termid":"GO:1901598"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"(-)-pinoresinol catabolic process","synonyms":[{"name":"(-)-pinoresinol breakdown","type":"exact"},{"name":"(-)-pinoresinol catabolism","type":"exact"},{"name":"(-)-pinoresinol degradation","type":"exact"}],"termid":"GO:1902123"}


id: PBO:0028512
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_H3-K9_methylation","termid":"PBO:0028512"}


id: GO:0032498
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a muramyl dipeptide stimulus is received by a cell and converted into a molecular signal. Muramyl dipeptide is derived from peptidoglycan.","definition_xrefs":["PMID:15998797","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to muramyl dipeptide","termid":"GO:0032495"},{"relation_name":"is_a","term_name":"detection of peptidoglycan","termid":"GO:0032499"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of muramyl dipeptide","termid":"GO:0032498"}


id: PBO:0045103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA methyltransferase 1 associated protein 1","termid":"PBO:0045103"}


id: PBO:0071005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 7","termid":"PBO:0071005"}


id: GO:0120271
data:
  {"annotated_genes":["SJAG_03883"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85943],"is_not":false,"summary":null,"term":"GO:0120271"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of selective degradation of meiosis-specific nuclear transcribed transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein.","definition_xrefs":["GOC:krc","PMID:24920274"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts","termid":"GO:0120270"},{"relation_name":"is_a","term_name":"negative regulation of mRNA catabolic process","termid":"GO:1902373"},{"relation_name":"negatively_regulates","term_name":"nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts","termid":"GO:0033621"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03883":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0016071"],"is_obsolete":false,"name":"negative regulation of nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0120271","terms_by_termid":{"GO:0120271":null}}


id: GO:1904726
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of replicative senescence.","definition_xrefs":["GO_REF:0000058","GOC:BHF","GOC:rph","PMID:23496142","GOC:TermGenie","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular metabolic process","termid":"GO:0031323"},{"relation_name":"regulates","term_name":"replicative senescence","termid":"GO:0090399"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of replicative senescence","termid":"GO:1904726"}


id: PBO:0076092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STUB1 pseudogene 1","termid":"PBO:0076092"}


id: GO:0008232
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex consisting of a heterodimer of Ecdysone receptor (EcR) and ultraspiracle (usp) bound to the ligand ecdysone, which activates transcription of target genes.","definition_xrefs":["PMID:10488333"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ecdysone receptor holocomplex","termid":"GO:0008230"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"activator ecdysone receptor complex","synonyms":[{"name":"activator ecdysone receptor holocomplex","type":"related"}],"termid":"GO:0008232"}


id: PBO:0039827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginase 1","termid":"PBO:0039827"}


id: PBO:0055852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LDL receptor related protein 2","termid":"PBO:0055852"}


id: GO:0160138
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: uridine(2604) in 23S rRNA = pseudouridine(2604) in 23S rRNA.","definition_xrefs":["RHEA:38875","EC:5.4.99.21"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA pseudouridine synthase activity","termid":"GO:0120159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0140098","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"23S rRNA pseudouridine(2604) synthase activity","termid":"GO:0160138"}


id: GO:0006681
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving galactosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of galactose by a ceramide group.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosylceramide metabolic process","termid":"GO:0006677"},{"relation_name":"is_a","term_name":"galactolipid metabolic process","termid":"GO:0019374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"galactosylceramide metabolic process","synonyms":[{"name":"galactosylceramide metabolism","type":"exact"}],"termid":"GO:0006681"}


id: PBO:0002390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol phoshorylceramide synthase regulatory subunit Kei1 (predicted)","termid":"PBO:0002390"}


id: GO:1903075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of pyridoxine from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["PMID:15701794","GO_REF:0000075","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"import across plasma membrane","termid":"GO:0098739"},{"relation_name":"is_a","term_name":"pyridoxine transmembrane transport","termid":"GO:1903092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"pyridoxine import across plasma membrane","synonyms":[{"name":"pyridoxine import into cell","type":"exact"}],"termid":"GO:1903075"}


id: PBO:0065315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 38","termid":"PBO:0065315"}


id: PR:Q9P4X3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- utp7 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P4X3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 small nucleolar RNA-associated protein 7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC959.03c","synonyms":[{"name":"Spom972h-utp7","type":"exact"},{"name":"U three protein 7 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"U3 snoRNA-associated protein 7 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P4X3"}


id: PBO:0054387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1783","termid":"PBO:0054387"}


id: FYPO:0007298
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein aggregate center formation is abnormal. Protein aggregate centers are composed of chaperones and misfolded proteins, and are reversibly formed in the nucleus and cytosol to shield thermosensitive proteins from degradation until conditions allow disaggregation and refolding.","definition_xrefs":["PMID:32075773","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular component assembly during vegetative growth","termid":"FYPO:0001354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein aggregate center formation","synonyms":[{"name":"abnormal PAC formation","type":"exact"},{"name":"abnormal protein aggregate center formation during mitotic cell cycle","type":"related"},{"name":"abnormal protein aggregate center formation during vegetative growth","type":"exact"},{"name":"abnormal protein aggregate centre formation","type":"exact"}],"termid":"FYPO:0007298"}


id: PR:O94323
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ectonucleotide pyrophosphatase/phosphodiesterase family member 5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized pyrophosphatase/phosphodiesterase C725.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC725.05c","secondary_identifiers":["UniProtKB:O94323"],"synonyms":[{"name":"Spom972h-ENPP5","type":"exact"}],"termid":"PR:O94323"}


id: PBO:0049724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HAUS augmin like complex subunit 6 pseudogene 2","termid":"PBO:0049724"}


id: GO:0106186
data:
  {"annotated_genes":["SJAG_00368","SJAG_02392"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[91972,102693],"is_not":false,"summary":null,"term":"GO:0106186"}]},"cv_name":"cellular_component","definition":"The leaflet the plasma membrane at the cell tip that faces the cytoplasm and any proteins embedded or anchored in it or attached to its surface.","definition_xrefs":["PMID:28292899","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic side of plasma membrane","termid":"GO:0009898"},{"relation_name":"part_of","term_name":"plasma membrane of cell tip","termid":"GO:0031520"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00368":null,"SJAG_02392":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"cytoplasmic side of plasma membrane, cell tip","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106186","terms_by_termid":{"GO:0106186":null}}


id: RO:0002357
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"p results in developmental induction of c if and only if p is a collection of cell-cell signaling processes that signal to a neighbouring tissue that is the precursor of the mature c, where the signaling results in the commitment to cell types necessary for the formation of c.","direct_ancestors":[{"relation_name":"is_a","term_name":"results_in_developmental_progression_of","termid":"_global:results_in_developmental_progression_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"results_in_developmental_induction_of","termid":"RO:0002357"}


id: PBO:0030985
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_metabolic_process","termid":"PBO:0030985"}


id: PBO:0055220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2646","termid":"PBO:0055220"}


id: PBO:0056456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARVEL domain containing 2","termid":"PBO:0056456"}


id: GO:0070475
data:
  {"annotated_genes":["SJAG_04890","SJAG_03877","SJAG_01958","SJAG_03008","SJAG_02281","SJAG_02417","SJAG_02024"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87452,91318,91753,109727,112311],"is_not":false,"summary":null,"term":"GO:0070475"},{"annotations":[92350,91030],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070476"}]},"cv_name":"biological_process","definition":"The addition of a methyl group to an atom in the nucleoside base portion of a nucleotide residue in an rRNA molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA methylation","termid":"GO:0031167"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01958":null,"SJAG_02024":null,"SJAG_02281":null,"SJAG_02417":null,"SJAG_03008":null,"SJAG_03877":null,"SJAG_04890":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0042254"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0044085","GO:0042254"],"is_obsolete":false,"name":"rRNA base methylation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0070475","terms_by_termid":{"GO:0070475":null,"GO:0070476":null}}


id: GO:0044791
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process in which a host organism activates or increases the frequency, rate or extent of the release of a virus with which it is infected, from its cells.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by host of viral release from host cell (obsolete GO:0044791)","termid":"GO:0044791"}


id: PBO:0049447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GXYLT1 pseudogene 1","termid":"PBO:0049447"}


id: SO:0001264
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A noncoding RNA that guides the insertion or deletion of uridine residues in mitochondrial mRNAs. This may also refer to synthetic RNAs used to guide DNA editing using the CRIPSR/Cas9 system.","direct_ancestors":[{"relation_name":"has_quality","term_name":"gRNA_encoding","termid":"SO:0000979"},{"relation_name":"is_a","term_name":"ncRNA_gene","termid":"SO:0001263"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gRNA_gene","synonyms":[{"name":"gRNA gene","type":"exact"}],"termid":"SO:0001264"}


id: GO:1902548
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to vascular endothelial growth factor stimulus.","definition_xrefs":["GOC:BHF","GOC:rl","GOC:TermGenie","PMID:17895370"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular response to growth factor stimulus","termid":"GO:0090288"},{"relation_name":"is_a","term_name":"regulation of cellular response to vascular endothelial growth factor stimulus","termid":"GO:1902547"},{"relation_name":"negatively_regulates","term_name":"cellular response to vascular endothelial growth factor stimulus","termid":"GO:0035924"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cellular response to vascular endothelial growth factor stimulus","synonyms":[{"name":"down regulation of cellular response to VEGF","type":"exact"},{"name":"down regulation of cellular response to VEGFA","type":"narrow"},{"name":"down regulation of cellular response to VEGFB","type":"narrow"},{"name":"down regulation of cellular response to vascular endothelial growth factor","type":"exact"},{"name":"down regulation of cellular response to vascular endothelial growth factor stimulus","type":"exact"},{"name":"down-regulation of cellular response to VEGF","type":"exact"},{"name":"down-regulation of cellular response to VEGFA","type":"narrow"},{"name":"down-regulation of cellular response to VEGFB","type":"narrow"},{"name":"down-regulation of cellular response to vascular endothelial growth factor","type":"exact"},{"name":"down-regulation of cellular response to vascular endothelial growth factor stimulus","type":"exact"},{"name":"downregulation of cellular response to VEGF","type":"exact"},{"name":"downregulation of cellular response to VEGFA","type":"narrow"},{"name":"downregulation of cellular response to VEGFB","type":"narrow"},{"name":"downregulation of cellular response to vascular endothelial growth factor","type":"exact"},{"name":"downregulation of cellular response to vascular endothelial growth factor stimulus","type":"exact"},{"name":"inhibition of cellular response to VEGF","type":"narrow"},{"name":"inhibition of cellular response to VEGFA","type":"narrow"},{"name":"inhibition of cellular response to VEGFB","type":"narrow"},{"name":"inhibition of cellular response to vascular endothelial growth factor","type":"narrow"},{"name":"inhibition of cellular response to vascular endothelial growth factor stimulus","type":"narrow"},{"name":"negative regulation of cellular response to VEGF","type":"exact"},{"name":"negative regulation of cellular response to VEGFA","type":"narrow"},{"name":"negative regulation of cellular response to VEGFB","type":"narrow"},{"name":"negative regulation of cellular response to vascular endothelial growth factor","type":"exact"}],"termid":"GO:1902548"}


id: PR:Q9HDV4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A lysine-specific demethylase 5A that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lid2 complex component lid2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP19A11.06","secondary_identifiers":["UniProtKB:Q9HDV4"],"synonyms":[{"name":"Lid2C component lid2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPBP19A11.06","type":"related"},{"name":"Spom972h-KDM5A","type":"exact"}],"termid":"PR:Q9HDV4"}


id: GO:0033085
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of T cell differentiation in the thymus.","definition_xrefs":["GOC:add","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T cell differentiation in thymus","termid":"GO:0033081"},{"relation_name":"is_a","term_name":"negative regulation of T cell differentiation","termid":"GO:0045581"},{"relation_name":"negatively_regulates","term_name":"T cell differentiation in thymus","termid":"GO:0033077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"negative regulation of T cell differentiation in thymus","synonyms":[{"name":"negative regulation of T cell development in thymus","type":"related"},{"name":"negative regulation of thymic T cell differentiation","type":"exact"},{"name":"negative regulation of thymocyte cell differentiation","type":"exact"},{"name":"negative regulation of thymocyte differentiation","type":"exact"}],"termid":"GO:0033085"}


id: MOD:01815
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-cysteine residue and an L-glutamic acid residue to form L-glutamate thiazole-4-carboxylic acid.","definition_xrefs":["PubMed:893891","PubMed:18406324","PubMed:19678698","RESID:AA0541"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiazole/thiazoline ring crosslinked residues","termid":"MOD:01420"},{"relation_name":"is_a","term_name":"didehydrogenated residue","termid":"MOD:01888"},{"relation_name":"is_a","term_name":"crosslinked L-glutamic acid residue","termid":"MOD:02045"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-glutamate thiazole-4-carboxylic acid","synonyms":[{"name":"2-[(1S)-1-amino-3-carboxypropyl]-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"2-[-1-azanyl-3-carboxypropyl]-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"CROSSLNK Thiazole-4-carboxylic acid (Glu-Cys)","type":"exact"},{"name":"L-glutamate thiazole-4-carboxylic acid","type":"exact"}],"termid":"MOD:01815"}


id: PBO:0044377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 1 subfamily A member 1","termid":"PBO:0044377"}


id: PBO:0046983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 86 member G, pseudogene","termid":"PBO:0046983"}


id: PBO:0050354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 57","termid":"PBO:0050354"}


id: GO:0071941
data:
  {"annotated_genes":["SJAG_05338","SJAG_04299","SJAG_00392","SJAG_04679","SJAG_02766","SJAG_01461","SJAG_00035","SJAG_04577","SJAG_03398","SJAG_00412","SJAG_04896"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[115059,87578],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043419"},{"annotations":[99568,106578,93486,88581,107186,109320,102621],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000050"},{"annotations":[92954,110177,91554,115060],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019627"}]},"cv_name":"biological_process","definition":"A nitrogen compound metabolic process that contributes to the nitrogen cycle. The nitrogen cycle is a series of metabolic pathways by which nitrogen is converted between various forms and redox states; it encompasses pathways in which nitrogen is acted upon directly, such as nitrification, denitrification, nitrogen fixation, and mineralization.","definition_xrefs":["Wikipedia:Nitrogen_cycle","GOC:mah","PMID:16675690"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00035":null,"SJAG_00392":null,"SJAG_00412":null,"SJAG_01461":null,"SJAG_02766":null,"SJAG_03398":null,"SJAG_04299":null,"SJAG_04577":null,"SJAG_04679":null,"SJAG_04896":null,"SJAG_05338":null},"genotype_count":0,"in_subsets":["bp_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nitrogen cycle metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0071941","terms_by_termid":{"GO:0000050":null,"GO:0019627":null,"GO:0043419":null}}


id: GO:0097132
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex consisting of cyclin D2 and cyclin-dependent kinase 6 (CDK6). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner.","definition_xrefs":["PMID:15935619","GOC:so"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent protein kinase holoenzyme complex","termid":"GO:0000307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"cyclin D2-CDK6 complex","termid":"GO:0097132"}


id: PBO:0061868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory marker protein","termid":"PBO:0061868"}


id: GO:1900722
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein adenylylation.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein modification process","termid":"GO:0031399"},{"relation_name":"regulates","term_name":"protein adenylylation","termid":"GO:0018117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of protein adenylylation","synonyms":[{"name":"regulation of protein AMPylation","type":"exact"},{"name":"regulation of protein adenylation","type":"exact"},{"name":"regulation of protein amino acid adenylylation","type":"exact"}],"termid":"GO:1900722"}


id: GO:1904384
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sodium phosphate stimulus.","definition_xrefs":["PMID:24625659","GO_REF:0000071","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to salt","termid":"GO:1902075"},{"relation_name":"is_a","term_name":"response to sodium phosphate","termid":"GO:1904383"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to sodium phosphate","termid":"GO:1904384"}


id: PBO:0111769
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WW domain","termid":"PBO:0111769"}


id: PBO:0003757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor Scr1","termid":"PBO:0003757"}


id: GO:0004780
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ADP + H+ + sulfate = 5'-adenylyl sulfate + phosphate.","definition_xrefs":["RHEA:16529","EC:2.7.7.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfate adenylyltransferase activity","termid":"GO:0004779"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016779","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"sulfate adenylyltransferase (ADP) activity","secondary_identifiers":["KEGG_REACTION:R00530","MetaCyc:SULFATE-ADENYLYLTRANSFERASE-ADP-RXN"],"synonyms":[{"name":"ADP-sulfurylase activity","type":"related"},{"name":"ADP:sulfate adenylyltransferase activity","type":"exact"},{"name":"adenosine diphosphate sulfurylase activity","type":"related"},{"name":"sulfate (adenosine diphosphate) adenylyltransferase activity","type":"related"},{"name":"sulphate adenylyltransferase (ADP) activity","type":"exact"}],"termid":"GO:0004780"}


id: GO:0042679
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a compound eye cone cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.","definition_xrefs":["GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate specification","termid":"GO:0001708"},{"relation_name":"part_of","term_name":"compound eye cone cell fate commitment","termid":"GO:0042676"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"compound eye cone cell fate specification","secondary_identifiers":["GO:0042678"],"termid":"GO:0042679"}


id: GO:0008106
data:
  {"annotated_genes":["SJAG_02963","SJAG_03958","SJAG_02010","SJAG_01869","SJAG_04660"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76338],"is_not":false,"summary":null,"term":"GO:0008106"},{"annotations":[91152,108841,87938],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004032"},{"annotations":[97297,91886],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032866"},{"annotations":[97298,91887],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032867"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: an alcohol + NADP+ = an aldehyde + NADPH + H+.","definition_xrefs":["EC:1.1.1.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldo-keto reductase (NADPH) activity","termid":"GO:0004033"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01869":null,"SJAG_02010":null,"SJAG_02963":null,"SJAG_03958":null,"SJAG_04660":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"alcohol dehydrogenase (NADP+) activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN0-7119","MetaCyc:ALCOHOL-DEHYDROGENASE-NADP+-RXN","RHEA:15937"],"synonyms":[{"name":"NADP-aldehyde reductase activity","type":"exact"},{"name":"alcohol:NADP dehydrogenase activity","type":"exact"},{"name":"aldehyde reductase (NADPH) activity","type":"exact"}],"termid":"GO:0008106","terms_by_termid":{"GO:0004032":null,"GO:0008106":null,"GO:0032866":null,"GO:0032867":null}}


id: GO:0008721
data:
  {"annotated_genes":["SJAG_04827"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[83772],"is_not":false,"summary":null,"term":"GO:0008721"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-serine = pyruvate + NH3.","definition_xrefs":["EC:4.3.1.18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ammonia-lyase activity","termid":"GO:0016841"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04827":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"D-serine ammonia-lyase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9034539","RHEA:13977","MetaCyc:DSERDEAM-RXN","Reactome:R-HSA-9014741"],"synonyms":[{"name":"D-hydroxy amino acid dehydratase activity","type":"broad"},{"name":"D-hydroxyaminoacid dehydratase activity","type":"related"},{"name":"D-serine ammonia-lyase (pyruvate-forming)","type":"related"},{"name":"D-serine deaminase activity","type":"related"},{"name":"D-serine dehydrase activity","type":"related"},{"name":"D-serine dehydratase (deaminating) activity","type":"related"},{"name":"D-serine dehydratase activity","type":"related"},{"name":"D-serine dehydration activity","type":"related"},{"name":"D-serine hydro-lyase (deaminating) activity","type":"related"},{"name":"D-serine hydrolase activity","type":"related"}],"termid":"GO:0008721","terms_by_termid":{"GO:0008721":null}}


id: PBO:0077576
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane and immunoglobulin domain containing 1","termid":"PBO:0077576"}


id: PBO:0065529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patched domain containing 3 pseudogene 1","termid":"PBO:0065529"}


id: FYPO:0000253
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of hydroxymethylglutaryl-CoA reductase (NADPH) activity is increased.","definition_xrefs":["PMID:19041767","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal oxidoreductase activity","termid":"FYPO:0000689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000654","FYPO:0000707","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"increased HMG-CoA reductase activity","termid":"FYPO:0000253"}


id: PBO:0080276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 39 pseudogene","termid":"PBO:0080276"}


id: PBO:0064757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase B","termid":"PBO:0064757"}


id: GO:0010254
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the floral nectaries over time, from its formation to the mature structure.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"flower development","termid":"GO:0009908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nectary development","termid":"GO:0010254"}


id: PBO:0091640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small non-coding RNA, poly(A)-bearing","termid":"PBO:0091640"}


id: PBO:0059242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L13","termid":"PBO:0059242"}


id: GO:0014906
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process aimed at the progression of a myotube cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. This occurs as part of the process of skeletal muscle regeneration. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myotube cell development","termid":"GO:0014904"},{"relation_name":"part_of","term_name":"myotube differentiation involved in skeletal muscle regeneration","termid":"GO:0014908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myotube cell development involved in skeletal muscle regeneration","termid":"GO:0014906"}


id: GO:0044740
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that negatively regulates the sensory perception of pain in a different organism.","definition_xrefs":["GOC:fj","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of nervous system process","termid":"GO:0031645"},{"relation_name":"is_a","term_name":"modulation of sensory perception of pain in another organism","termid":"GO:0044465"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of sensory perception of pain in another organism","synonyms":[{"name":"inhibition of sensory perception of pain in another organism","type":"exact"},{"name":"negative regulation of sensory perception of pain in other organism","type":"exact"}],"termid":"GO:0044740"}


id: PBO:0081880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 827","termid":"PBO:0081880"}


id: GO:0008177
data:
  {"annotated_genes":["SJAG_00260","SJAG_01671"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84988,85346],"is_not":false,"summary":null,"term":"GO:0008177"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a quinone + succinate = a quinol + fumarate.","definition_xrefs":["RHEA:40523"],"direct_ancestors":[{"relation_name":"is_a","term_name":"succinate dehydrogenase activity","termid":"GO:0000104"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor","termid":"GO:0016635"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00260":null,"SJAG_01671":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"succinate dehydrogenase (quinone) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R02164","MetaCyc:RXN-14971","Reactome:R-HSA-163213","GO:0019737","EC:1.3.5.1","Reactome:R-HSA-70994"],"synonyms":[{"name":"fumarate reductase (menaquinone)","type":"narrow"},{"name":"succinate dehydrogenase (menaquinone)","type":"narrow"},{"name":"succinate dehydrogenase (ubiquinone) activity","type":"narrow"},{"name":"succinic dehydrogenase activity","type":"broad"}],"termid":"GO:0008177","terms_by_termid":{"GO:0008177":null}}


id: PBO:0055388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2818","termid":"PBO:0055388"}


id: PBO:0091841
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-A replaces histone H3 in new nucleosomes at centromeres during mitotic G2 phase","termid":"PBO:0091841"}


id: GO:0045305
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Functions to either promote or inhibit the establishment of competence for transformation.","definition_xrefs":["GOC:mlg"],"gene_count":0,"genotype_count":0,"name":"obsolete regulator of establishment of competence for transformation activity (obsolete GO:0045305)","synonyms":[{"name":"regulator of establishment of competence for transformation activity","type":"exact"}],"termid":"GO:0045305"}


id: PBO:0087581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C); APC/C is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition","termid":"PBO:0087581"}


id: PBO:0039091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alanine--glyoxylate aminotransferase 2","termid":"PBO:0039091"}


id: SO:0001046
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Component of the inversion site located at the left of a region susceptible to site-specific inversion.","definition_xrefs":["Phigo:at"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inversion_site_part","termid":"SO:0001048"},{"relation_name":"part_of","term_name":"inversion_site","termid":"SO:0000948"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IRLinv_site","synonyms":[{"name":"IRLinv site","type":"exact"}],"termid":"SO:0001046"}


id: PBO:0000492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sporulation protein Spo15","termid":"PBO:0000492"}


id: GO:0086002
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An action potential that occurs in a cardiac muscle cell and is involved in its contraction.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac muscle cell action potential","termid":"GO:0086001"},{"relation_name":"part_of","term_name":"cardiac muscle cell contraction","termid":"GO:0086003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac muscle cell action potential involved in contraction","termid":"GO:0086002"}


id: PR:Q10211
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC4H3.03c gene.","definition_xrefs":["UniProtKB:Q10211","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C4H3.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4H3.03c","synonyms":[{"name":"Spom972h-SPAC4H3.03c","type":"exact"}],"termid":"PR:Q10211"}


id: PBO:0025502
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate carboxylase deficiency","termid":"PBO:0025502"}


id: FYPO:0000534
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which spindle pole body localization is abnormal. Spindle pole body localization is the process in which a whole spindle pole body is transported to, or maintained in, a specific location.","definition_xrefs":["GO:0070631","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization phenotype during vegetative growth","termid":"FYPO:0001337"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormal mitotic spindle pole body localization","synonyms":[{"name":"abnormal mitotic SPB localization","type":"exact"},{"name":"abnormal mitotic spindle pole body localisation","type":"exact"},{"name":"abnormal position of mitotic spindle pole body","type":"related"},{"name":"abnormal spindle pole body localization during mitotic cell cycle","type":"related"},{"name":"abnormal spindle pole body localization during vegetative growth","type":"exact"},{"name":"position of spindle pole body: abnormal","type":"related"}],"termid":"FYPO:0000534"}


id: GO:1901539
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ent-pimara-8(14),15-diene.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpene metabolic process","termid":"GO:0042214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"ent-pimara-8(14),15-diene metabolic process","synonyms":[{"name":"ent-pimara-8(14),15-diene metabolism","type":"exact"}],"termid":"GO:1901539"}


id: PBO:0056267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mastermind like transcriptional coactivator 3","termid":"PBO:0056267"}


id: GO:1990888
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-polyprenyl-6-hydroxyphenol + S-adenosyl-L-methionine = 2-polyprenyl-6-methoxyphenol + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["PMID:10419476"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-methyltransferase activity","termid":"GO:0008171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016741","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"2-polyprenyl-6-hydroxyphenol O-methyltransferase activity","termid":"GO:1990888"}


id: FYPO:0006840
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which LinE complex assembly is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein complex assembly","termid":"FYPO:0006839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal LinE complex assembly","synonyms":[{"name":"normal linear element protein complex assembly","type":"exact"}],"termid":"FYPO:0006840"}


id: PBO:0056392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase binding protein 1","termid":"PBO:0056392"}


id: PATO:0000842
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000842 absolute auditory threshold value (obsolete PATO:0000842)","termid":"PATO:0000842"}


id: GO:0102900
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dehydroabietadienal + NADPH + O2 = dehydroabietic acid + NADP + H2O.","definition_xrefs":["EC:1.14.13.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"dehydroabietadienal hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-8534"],"termid":"GO:0102900"}


id: MOD:00207
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamic acid residue to isoglutamyl-polyglutamic acid, forming an isopeptide bond with a polyglutamic acid.","definition_xrefs":["RESID:AA0202","PubMed:1680872","PubMed:10747868"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-glutamic acid residue","termid":"MOD:00906"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-isoglutamyl-polyglutamic acid","synonyms":[{"name":"L-isoglutamyl-polyglutamic acid","type":"exact"},{"name":"gamma-glutamylpolyglutamic acid","type":"exact"}],"termid":"MOD:00207"}


id: GO:1903287
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of potassium ion import across the plasma membrane.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11","GOC:rl","PMID:10636900","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of potassium ion transmembrane transport","termid":"GO:1901380"},{"relation_name":"is_a","term_name":"regulation of potassium ion import","termid":"GO:1903286"},{"relation_name":"negatively_regulates","term_name":"potassium ion import across plasma membrane","termid":"GO:1990573"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"negative regulation of potassium ion import across plasma membrane","synonyms":[{"name":"down regulation of potassium import","type":"broad"},{"name":"down regulation of potassium ion import","type":"broad"},{"name":"down regulation of potassium ion uptake","type":"broad"},{"name":"down-regulation of potassium import","type":"broad"},{"name":"down-regulation of potassium ion import","type":"broad"},{"name":"down-regulation of potassium ion uptake","type":"broad"},{"name":"downregulation of potassium import","type":"broad"},{"name":"downregulation of potassium ion import","type":"broad"},{"name":"downregulation of potassium ion uptake","type":"broad"},{"name":"inhibition of potassium import","type":"narrow"},{"name":"inhibition of potassium ion import","type":"narrow"},{"name":"inhibition of potassium ion uptake","type":"narrow"},{"name":"negative regulation of potassium import","type":"broad"},{"name":"negative regulation of potassium ion import","type":"broad"},{"name":"negative regulation of potassium ion uptake","type":"broad"}],"termid":"GO:1903287"}


id: PBO:0082301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Asn and gln rich protein of unknown function; high-copy suppressor of POL1 (DNA polymerase alpha) and partial suppressor of CDC2 (polymerase delta) and CDC6 (pre-RC loading factor) mutations; overexpression results in growth inhibition; capable of forming the prion [PSP1+]; PSP1 has a paralog, YLR177W, that arose from the whole genome duplication","termid":"PBO:0082301"}


id: PBO:0067717
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal 15","termid":"PBO:0067717"}


id: PBO:0029764
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_double-strand_break_site","termid":"PBO:0029764"}


id: FYPO:0006437
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the mitotic DNA damage checkpoint is normal (i.e. indistinguishable from wild type) when the cell is exposed to methyl methanesulfonate. The S phase DNA damage checkpoint slows progression through S phase in response to DNA damage.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic DNA damage checkpoint","termid":"FYPO:0001705"},{"relation_name":"is_a","term_name":"normal mitotic cell cycle regulation during cellular response to methyl methanesulfonate","termid":"FYPO:0005373"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000298","FYPO:0000631"],"is_obsolete":false,"name":"normal mitotic DNA damage checkpoint during cellular response to methyl methanesulfonate","synonyms":[{"name":"normal mitotic DNA damage checkpoint activation during cellular response to methyl methanesulfonate","type":"exact"},{"name":"normal mitotic DNA damage checkpoint during cellular response to MMS","type":"exact"},{"name":"normal mitotic DNA damage checkpoint during cellular response to methyl methanesulfonate during mitotic cell cycle","type":"exact"},{"name":"normal mitotic DNA damage checkpoint during cellular response to methyl methanesulfonate during vegetative growth","type":"exact"}],"termid":"FYPO:0006437"}


id: GO:0008541
data:
  {"annotated_genes":["SJAG_02992","SJAG_04572","SJAG_04484","SJAG_00762","SJAG_04144","SJAG_02900","SJAG_03408","SJAG_00738","SJAG_04211","SJAG_03321","SJAG_01203","SJAG_01652"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[85023,90286,92528,93231,94926,95068,97769,98222,100463,105419,107334,111259,111367],"is_not":false,"summary":null,"term":"GO:0008541"}]},"cv_name":"cellular_component","definition":"The subcomplex of the proteasome regulatory particle that forms the peripheral lid, which is added on top of the base subcomplex.","definition_xrefs":["GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"proteasome regulatory particle","termid":"GO:0005838"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00738":null,"SJAG_00762":null,"SJAG_01203":null,"SJAG_01652":null,"SJAG_02900":null,"SJAG_02992":null,"SJAG_03321":null,"SJAG_03408":null,"SJAG_04144":null,"SJAG_04211":null,"SJAG_04484":null,"SJAG_04572":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"proteasome regulatory particle, lid subcomplex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0008541","terms_by_termid":{"GO:0008541":null}}


id: PBO:0051723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insulin receptor related receptor","termid":"PBO:0051723"}


id: GO:0047470
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-[(1->4)-alpha-D-glucosyl](n-1)-D-glucose = 1-alpha-D-[(1->4)-alpha-D-glucosyl](n-1)-alpha-D-glucopyranoside.","definition_xrefs":["EC:5.4.99.15","MetaCyc:5.4.99.15-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular transferase activity","termid":"GO:0016866"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"(1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity","secondary_identifiers":["RHEA:13621"],"synonyms":[{"name":"(1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase","type":"broad"},{"name":"malto-oligosyltrehalose synthase activity","type":"related"},{"name":"maltodextrin alpha-D-glucosyltransferase activity","type":"related"}],"termid":"GO:0047470"}


id: PBO:0048167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fizzy and cell division cycle 20 related 1","termid":"PBO:0048167"}


id: PBO:0083594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a protein, based on available experimental and comparative sequence data; YAR070C has a paralog, YHR214C-B, that arose from a segmental duplication","termid":"PBO:0083594"}


id: PBO:0048988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glypican 1","termid":"PBO:0048988"}


id: GO:0050017
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-cysteine + HCN = sulfide + L-3-cyanoalanine.","definition_xrefs":["EC:4.4.1.9","MetaCyc:L-3-CYANOALANINE-SYNTHASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-sulfur lyase activity","termid":"GO:0016846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"L-3-cyanoalanine synthase activity","secondary_identifiers":["RHEA:17821"],"synonyms":[{"name":"L-cysteine hydrogen-sulfide-lyase (adding HCN)","type":"related"},{"name":"L-cysteine hydrogen-sulfide-lyase (adding hydrogen cyanide; L-3-cyanoalanine-forming)","type":"related"},{"name":"beta-cyano-L-alanine synthase activity","type":"related"},{"name":"beta-cyanoalanine synthase activity","type":"related"},{"name":"beta-cyanoalanine synthetase activity","type":"related"}],"termid":"GO:0050017"}


id: PBO:0046036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 2 subunit 2 beta pseudogene 4","termid":"PBO:0046036"}


id: PBO:0086290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a role in DNA repair; mutants show reduced efficiency of non-homologous end-joining repair","termid":"PBO:0086290"}


id: PBO:0083352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps the verified gene IES1/YFL013C","termid":"PBO:0083352"}


id: PBO:0067145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 193, pseudogene","termid":"PBO:0067145"}


id: PBO:0029503
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_without_cell_division,_with_elongated,_curved_germ_tube","termid":"PBO:0029503"}


id: PBO:0049981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIKESHI pseudogene 2","termid":"PBO:0049981"}


id: PBO:0084659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondria-associated F-box protein; involved in maintenance of normal mitochondrial morphology; interacts with Skp1p through the F-box motif; preferentially localizes to the mother cell during budding","termid":"PBO:0084659"}


id: PBO:0043524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly factor 6","termid":"PBO:0043524"}


id: GO:0014879
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events by which an electrical stimulus is received and converted into a molecular signal. This occurs as part of the regulation of muscle adaptation.","definition_xrefs":["GOC:mtg_muscle","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to electrical stimulus involved in regulation of muscle adaptation","termid":"GO:0014878"},{"relation_name":"is_a","term_name":"detection of electrical stimulus","termid":"GO:0050981"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of electrical stimulus involved in regulation of muscle adaptation","termid":"GO:0014879"}


id: PBO:0056797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitofusin 1","termid":"PBO:0056797"}


id: GO:0090656
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A telomere maintenance process that results in the formation of a telomeric circle, or t-circle. A t-circle is an extrachromosomal duplex or single-stranded circular DNA molecule composed of t-arrays. T-circles are involved in the control of telomere length via alternative-lengthening of telomeres (ALT) pathway and telomere rapid deletion (TRD).","definition_xrefs":["PMID:19858100","GOC:BHF_telomere","GOC:nc","PMID:19214183","PMID:19581589","GOC:BHF","PMID:19809492"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formation of extrachromosomal circular DNA","termid":"GO:0001325"},{"relation_name":"part_of","term_name":"telomere maintenance via telomere trimming","termid":"GO:0090737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0032200"}],"interesting_parent_ids":["GO:0032200","GO:0008150","GO:0044085","GO:0006259"],"is_obsolete":false,"name":"t-circle formation","synonyms":[{"name":"telomeric circle formation","type":"exact"}],"termid":"GO:0090656"}


id: PBO:0089692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Swr1 complex histone chaperone module subunit, SNF2 family ATP-dependent chromatin remodeller Swr1","termid":"PBO:0089692"}


id: GO:0090616
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in forming the mature 3' end of an mRNA molecule that derives from the mitochondrial genome.","definition_xrefs":["PMID:25181358","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial RNA 3'-end processing","termid":"GO:0000965"},{"relation_name":"is_a","term_name":"mRNA 3'-end processing","termid":"GO:0031124"},{"relation_name":"is_a","term_name":"mitochondrial mRNA processing","termid":"GO:0090615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0140053"}],"interesting_parent_ids":["GO:0140053","GO:0008150","GO:0010467","GO:0016071"],"is_obsolete":false,"name":"mitochondrial mRNA 3'-end processing","termid":"GO:0090616"}


id: GO:0102152
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + 1-palmitoyl-2-linoleoyl-phosphatidylcholine + NADPH + O2 = 1-palmitoyl-2-vernoloyl-phosphatidylcholine + NADP + H2O.","definition_xrefs":["GOC:pz","EC:1.14.13.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"Delta12-linoleate epoxygenase activity","secondary_identifiers":["MetaCyc:RXN-11671"],"termid":"GO:0102152"}


id: PBO:0082186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alcohol acetyltransferase; responsible for the major part of volatile acetate ester production during fermentation; main enzyme involved in terpenyl acetate synthesis; potential roles in lipid and sterol metabolism","termid":"PBO:0082186"}


id: PR:Q09776
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- snu23 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09776"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U4/U6.U5 small nuclear ribonucleoprotein component snu23 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22F3.11c","synonyms":[{"name":"Spom972h-snu23","type":"exact"}],"termid":"PR:Q09776"}


id: PBO:0054806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2219","termid":"PBO:0054806"}


id: GO:0050326
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: taxifolin + NAD(P)H + H+ + O2 = 2,3-dihydrogossypetin + NAD(P)+ + H2O.","definition_xrefs":["MetaCyc:TAXIFOLIN-8-MONOOXYGENASE-RXN","EC:1.14.13.19"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"taxifolin 8-monooxygenase activity","synonyms":[{"name":"taxifolin hydroxylase activity","type":"exact"},{"name":"taxifolin,NAD(P)H:oxygen oxidoreductase (8-hydroxylating)","type":"related"}],"termid":"GO:0050326"}


id: PBO:0061961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily A member 25","termid":"PBO:0061961"}


id: GO:1901586
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of acid-sensing ion channel activity.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of acid-sensing ion channel activity (obsolete GO:1901586)","synonyms":[{"name":"down regulation of ASIC activity","type":"exact"},{"name":"down regulation of acid-sensing ion channel activity","type":"exact"},{"name":"down-regulation of ASIC activity","type":"exact"},{"name":"down-regulation of acid-sensing ion channel activity","type":"exact"},{"name":"downregulation of ASIC activity","type":"exact"},{"name":"downregulation of acid-sensing ion channel activity","type":"exact"},{"name":"inhibition of ASIC activity","type":"exact"},{"name":"inhibition of acid-sensing ion channel activity","type":"narrow"},{"name":"negative regulation of ASIC activity","type":"exact"}],"termid":"GO:1901586"}


id: PBO:0042234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin Y like 6 (pseudogene)","termid":"PBO:0042234"}


id: PBO:0060796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit S5 pseudogene 2","termid":"PBO:0060796"}


id: PBO:0110263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial F1-FO ATP synthase peripheral stalk assembly factor Ina22","termid":"PBO:0110263"}


id: PBO:0051983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"jagged canonical Notch ligand 2","termid":"PBO:0051983"}


id: GO:0047832
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5D-5-O-methyl-chiro-inositol + NADP+ = 2D-5-O-methyl-2,3,5/4,6-pentahydroxycyclohexanone + H+ + NADPH.","definition_xrefs":["EC:1.1.1.142","RHEA:20437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"D-pinitol dehydrogenase activity","secondary_identifiers":["MetaCyc:D-PINITOL-DEHYDROGENASE-RXN","KEGG_REACTION:R03498"],"synonyms":[{"name":"1D-3-O-methyl-chiro-inositol:NADP+ oxidoreductase activity","type":"related"},{"name":"5D-5-O-methyl-chiro-inositol:NADP+ oxidoreductase activity","type":"related"}],"termid":"GO:0047832"}


id: PBO:0084660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial 15S rRNA-binding protein; required for intron removal of COB and COX1 pre-mRNAs; has separable roles in stabilizing mitochondrial 15S rRNA and in maturation of the COB and COX1 mRNAs; contains pentatricopeptide repeat (PPR) motifs; mutant is respiratory deficient and has defective plasma membrane electron transport","termid":"PBO:0084660"}


id: GO:0034044
data:
  {"annotated_genes":["SJAG_00916","SJAG_02240"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[96021,104903],"is_not":false,"summary":null,"term":"GO:0034044"}]},"cv_name":"cellular_component","definition":"A protein complex that forms a coat structure on vesicles involved in exocytosis of proteins from the trans-Golgi network to the cell surface; in Saccharomyces, the complex contains Chs5p, Chs6p, and Chs6p paralogues.","definition_xrefs":["PMID:17000877","PMID:16498409"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"Golgi apparatus","termid":"GO:0005794"},{"relation_name":"part_of","term_name":"trans-Golgi network transport vesicle","termid":"GO:0030140"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00916":null,"SJAG_02240":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005737","GO:0005794","GO:0032991","GO:0005575","GO:0031410"],"is_obsolete":false,"name":"exomer complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0034044","terms_by_termid":{"GO:0034044":null}}


id: PBO:0027104
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_termination_of_RNA_polymerase_II_transcription_at_tDNA","termid":"PBO:0027104"}


id: GO:0072037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a mesenchymal stem cell that contributes to the shaping of a nephron. A mesenchymal stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation involved in kidney development","termid":"GO:0061005"},{"relation_name":"is_a","term_name":"mesenchymal stem cell differentiation","termid":"GO:0072497"},{"relation_name":"part_of","term_name":"nephron morphogenesis","termid":"GO:0072028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal stem cell differentiation involved in nephron morphogenesis","termid":"GO:0072037"}


id: PATO:0000277
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fertility","termid":"PATO:0000274"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"female fertility","termid":"PATO:0000277"}


id: PBO:0080709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Wnt family member 10A","termid":"PBO:0080709"}


id: GO:0140313
data:
  {"annotated_genes":["SJAG_02576","SJAG_01803","SJAG_04873","SJAG_00642","SJAG_00145","SJAG_02857","SJAG_02266","SJAG_02474","SJAG_00436","SJAG_04682","SJAG_01078","SJAG_00822"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[107827,86368,91354,96604,91291,101096,83808,96655,103525],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140311"},{"annotations":[101020],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140610"},{"annotations":[89900,89901],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140486"}]},"cv_name":"molecular_function","definition":"Binding to a specific molecule to prevent it from interacting with other partners or to inhibit its localization to the area of the cell or complex where it is active.","definition_xrefs":["PMID:13130076"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular_function","termid":"GO:0003674"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00145":null,"SJAG_00436":null,"SJAG_00642":null,"SJAG_00822":null,"SJAG_01078":null,"SJAG_01803":null,"SJAG_02266":null,"SJAG_02474":null,"SJAG_02576":null,"SJAG_02857":null,"SJAG_04682":null,"SJAG_04873":null},"genotype_count":0,"in_subsets":["mf_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"molecular sequestering activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-3245898"],"termid":"GO:0140313","terms_by_termid":{"GO:0140311":null,"GO:0140486":null,"GO:0140610":null}}


id: PBO:0083062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dihydrolipoyl transsuccinylase; component of the mitochondrial alpha-ketoglutarate dehydrogenase complex, which catalyzes the oxidative decarboxylation of alpha-ketoglutarate to succinyl-CoA in the TCA cycle; phosphorylated","termid":"PBO:0083062"}


id: FYPO:0007699
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a smaller than normal proportion of cells in a homothallic population undergoes conjugation with non-sister cells.","definition_xrefs":["PMID:30279276","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased conjugation frequency","termid":"FYPO:0000303"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"decreased frequency of conjugation with non-sister cells","synonyms":[{"name":"decreased conjugation frequency with non-sister cells","type":"exact"},{"name":"decreased frequency of mating with non-sister cells","type":"exact"},{"name":"decreased mating efficiency with non-sister cells","type":"related"},{"name":"decreased mating frequency with non-sister cells","type":"exact"}],"termid":"FYPO:0007699"}


id: FYPO:0004817
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of small RNA (such as siRNA) derived from antisense transcription of ribosomal DNA measured in a cell is lower than normal.","definition_xrefs":["PMID:25417108","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased antisense RNA level","termid":"FYPO:0004816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0006551"],"is_obsolete":false,"name":"decreased rDNA antisense small RNA level","synonyms":[{"name":"decreased accumulation of rDNA antisense small RNAs","type":"related"},{"name":"decreased antisense small RNA at rDNA","type":"exact"},{"name":"decreased antisense transcription-derived small RNA level at rDNA","type":"exact"},{"name":"decreased rDNA antisense small RNA accumulation","type":"related"},{"name":"decreased rDNA antisense small RNA level during mitotic cell cycle","type":"related"},{"name":"decreased rDNA antisense small RNA level during vegetative growth","type":"exact"},{"name":"reduced rDNA antisense small RNA level","type":"exact"}],"termid":"FYPO:0004817"}


id: PBO:0072736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S100 calcium binding protein A1","termid":"PBO:0072736"}


id: PR:Q9Y7J5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1778.09 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7J5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC domain-containing protein C1778.09 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1778.09","synonyms":[{"name":"Spom972h-SPBC1778.09","type":"exact"}],"termid":"PR:Q9Y7J5"}


id: PBO:0066439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reticulophagy regulator 1","termid":"PBO:0066439"}


id: GO:0042367
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of biotin, cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biotin metabolic process","termid":"GO:0006768"},{"relation_name":"is_a","term_name":"water-soluble vitamin catabolic process","termid":"GO:0042365"},{"relation_name":"is_a","term_name":"amide catabolic process","termid":"GO:0043605"},{"relation_name":"is_a","term_name":"sulfur compound catabolic process","termid":"GO:0044273"},{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"},{"relation_name":"is_a","term_name":"organonitrogen compound catabolic process","termid":"GO:1901565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006766"}],"interesting_parent_ids":["GO:0044248","GO:0006766","GO:0006790","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"biotin catabolic process","synonyms":[{"name":"biotin breakdown","type":"exact"},{"name":"biotin catabolism","type":"exact"},{"name":"biotin degradation","type":"exact"},{"name":"vitamin B7 catabolic process","type":"exact"},{"name":"vitamin B7 catabolism","type":"exact"},{"name":"vitamin H catabolic process","type":"exact"},{"name":"vitamin H catabolism","type":"exact"}],"termid":"GO:0042367"}


id: PBO:0058266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4644","termid":"PBO:0058266"}


id: GO:0047298
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-3-amino-2-methylpropanoate + 2-oxoglutarate = 2-methyl-3-oxopropanoate + L-glutamate.","definition_xrefs":["RHEA:13993","EC:2.6.1.22"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016769","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"(S)-3-amino-2-methylpropionate transaminase activity","secondary_identifiers":["MetaCyc:2.6.1.22-RXN","KEGG_REACTION:R04188"],"synonyms":[{"name":"(S)-3-amino-2-methylpropanoate:2-oxoglutarate aminotransferase activity","type":"related"},{"name":"(S)-3-amino-2-methylpropionate aminotransferase activity","type":"exact"},{"name":"L-3-aminoisobutyrate aminotransferase activity","type":"related"},{"name":"L-3-aminoisobutyrate transaminase activity","type":"related"},{"name":"L-3-aminoisobutyric aminotransferase activity","type":"related"},{"name":"L-AIBAT activity","type":"related"},{"name":"beta-aminobutyric transaminase activity","type":"related"},{"name":"beta-aminoisobutyrate-alpha-ketoglutarate transaminase activity","type":"related"}],"termid":"GO:0047298"}


id: PBO:0050968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon omega 1 pseudogene 2","termid":"PBO:0050968"}


id: GO:0018658
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: salicylate + NADH + H+ + O2 = catechol + NAD+ + H2O + CO2.","definition_xrefs":["EC:1.14.13.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"salicylate 1-monooxygenase activity","secondary_identifiers":["RHEA:11004","UM-BBD_enzymeID:e0149","MetaCyc:SALICYLATE-1-MONOOXYGENASE-RXN"],"synonyms":[{"name":"salicylate 1-hydroxylase activity","type":"related"},{"name":"salicylate hydroxylase (decarboxylating)","type":"related"},{"name":"salicylate hydroxylase activity","type":"exact"},{"name":"salicylate monooxygenase activity","type":"related"},{"name":"salicylate,NADH:oxygen oxidoreductase (1-hydroxylating, decarboxylating)","type":"related"},{"name":"salicylic hydroxylase activity","type":"related"}],"termid":"GO:0018658"}


id: PBO:0090551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S12 Mrps12b","termid":"PBO:0090551"}


id: GO:1902168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a catechin stimulus.","definition_xrefs":["GOC:TermGenie","GOC:rjd","PMID:23516620"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to phenylpropanoid","termid":"GO:0080184"},{"relation_name":"is_a","term_name":"response to flavonoid","termid":"GO:1905395"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to catechin","termid":"GO:1902168"}


id: GO:1903596
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of gap junction assembly.","definition_xrefs":["GOC:rl","GOC:mtg_cardiac_conduct_nov11","GOC:TermGenie","GO_REF:0000058","GOC:BHF","PMID:25017399"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell junction assembly","termid":"GO:1901888"},{"relation_name":"regulates","term_name":"gap junction assembly","termid":"GO:0016264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"regulation of gap junction assembly","termid":"GO:1903596"}


id: PATO:0000825
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000825 visual ability value (obsolete PATO:0000825)","termid":"PATO:0000825"}


id: PBO:0054316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1708","termid":"PBO:0054316"}


id: PBO:0001736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nedd4/Rsp5 family","termid":"PBO:0001736"}


id: GO:0048445
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the carpel are generated and organized.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"floral organ morphogenesis","termid":"GO:0048444"},{"relation_name":"part_of","term_name":"carpel development","termid":"GO:0048440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"carpel morphogenesis","secondary_identifiers":["GO:0048430"],"termid":"GO:0048445"}


id: PATO:0002491
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orientation","termid":"PATO:0000133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anterodorsal orientation","synonyms":[{"name":"anterodorsally directed","type":"exact"}],"termid":"PATO:0002491"}


id: GO:0032050
data:
  {"annotated_genes":["SJAG_01748"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72624],"is_not":false,"summary":null,"term":"GO:0032050"}]},"cv_name":"molecular_function","definition":"Binding to a clathrin heavy chain.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clathrin binding","termid":"GO:0030276"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01748":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"clathrin heavy chain binding","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0032050","terms_by_termid":{"GO:0032050":null}}


id: PBO:0030719
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_wall_alpha-glucan_level","termid":"PBO:0030719"}


id: PBO:0065700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purine rich element binding protein B","termid":"PBO:0065700"}


id: PBO:0059216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maestro","termid":"PBO:0059216"}


id: GO:0034315
data:
  {"annotated_genes":["SJAG_03455"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87019],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034316"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of actin nucleation mediated by the Arp2/3 complex and interacting proteins.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of actin nucleation","termid":"GO:0051125"},{"relation_name":"regulates","term_name":"Arp2/3 complex-mediated actin nucleation","termid":"GO:0034314"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03455":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0007010","GO:0008150","GO:0030036"],"is_obsolete":false,"name":"regulation of Arp2/3 complex-mediated actin nucleation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0034315","terms_by_termid":{"GO:0034316":null}}


id: PBO:0047666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fukutin","termid":"PBO:0047666"}


id: GO:0071200
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A voltage-gated potassium channel complex that contains the peptidase-related protein DPP6 associated with the channel via interaction with the Kv alpha subunit 4.2.","definition_xrefs":["PMID:15911355","PMID:12575952"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated potassium channel complex","termid":"GO:0008076"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Kv4.2-DPP6 channel complex","secondary_identifiers":["CORUM:603"],"synonyms":[{"name":"Kv4.2-DPPX channel complex","type":"exact"}],"termid":"GO:0071200"}


id: PBO:0071966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 kinase A5","termid":"PBO:0071966"}


