# terms

id: PBO:0063577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"p53 apoptosis effector related to PMP22","termid":"PBO:0063577"}


id: PBO:0065862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB19, member RAS oncogene family","termid":"PBO:0065862"}


id: PBO:0048891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A6 family like 11, pseudogene","termid":"PBO:0048891"}


id: PBO:0054330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1723","termid":"PBO:0054330"}


id: PBO:0087620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Cop9 signalosome; which is required for deneddylation, or removal of the ubiquitin-like protein Rub1p from Cdc53p (cullin); involved in adaptation to pheromone signaling; functional equivalent of canonical Csn6 subunit of the COP9 signalosome","termid":"PBO:0087620"}


id: GO:0072707
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sodium dodecyl sulfate (SDS) stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to sodium dodecyl sulfate","termid":"GO:0072706"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to sodium dodecyl sulfate","synonyms":[{"name":"cellular response to SDS","type":"exact"}],"termid":"GO:0072707"}


id: GO:0032465
data:
  {"annotated_genes":["SJAG_00082","SJAG_04597","SJAG_04943","SJAG_06270","SJAG_01805","SJAG_05290","SJAG_00883","SJAG_03936","SJAG_02592","SJAG_01787","SJAG_04455","SJAG_04666","SJAG_03704","SJAG_03692","SJAG_04468","SJAG_01386","SJAG_04551","SJAG_01188","SJAG_03631","SJAG_00256","SJAG_03681","SJAG_00229","SJAG_01114","SJAG_03508","SJAG_03887","SJAG_03581","SJAG_02169","SJAG_02514","SJAG_03592","SJAG_00514","SJAG_00526","SJAG_02838","SJAG_03048","SJAG_03342","SJAG_00845","SJAG_02392","SJAG_04776","SJAG_01837","SJAG_02807","SJAG_01790","SJAG_03353","SJAG_01863","SJAG_04412","SJAG_02380","SJAG_01456","SJAG_03309"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95786],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010974"},{"annotations":[98489],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903500"},{"annotations":[99820],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903472"},{"annotations":[98264,98490],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902413"},{"annotations":[98494],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905757"},{"annotations":[89583,103341,88962,89044,87857,95707,91775,95787,106283,101134,103650,86874,112007,97390],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031030"},{"annotations":[90541,86152],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903501"},{"annotations":[83706,90542,106634,90710,109473],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903473"},{"annotations":[86153,89930],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903490"},{"annotations":[86916,91985,99823,115222,106877],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903617"},{"annotations":[88540,109474,103153,111568,85395,102482,86025,101277,89931,113974],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140281"},{"annotations":[88541,90545,83707],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905758"},{"annotations":[89937,90507,115569],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903499"},{"annotations":[109476,86158,112787,99613,105322,111569,85971,113607,87968,114764,83709],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902412"},{"annotations":[84029,97502,107482],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902472"},{"annotations":[113975],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140279"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the division of the cytoplasm of a cell and its separation into two daughter cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"is_a","term_name":"regulation of cell division","termid":"GO:0051302"},{"relation_name":"regulates","term_name":"cytokinesis","termid":"GO:0000910"}],"gene_count":46,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00229":null,"SJAG_00256":null,"SJAG_00514":null,"SJAG_00526":null,"SJAG_00845":null,"SJAG_00883":null,"SJAG_01114":null,"SJAG_01188":null,"SJAG_01386":null,"SJAG_01456":null,"SJAG_01787":null,"SJAG_01790":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_01863":null,"SJAG_02169":null,"SJAG_02380":null,"SJAG_02392":null,"SJAG_02514":null,"SJAG_02592":null,"SJAG_02807":null,"SJAG_02838":null,"SJAG_03048":null,"SJAG_03309":null,"SJAG_03342":null,"SJAG_03353":null,"SJAG_03508":null,"SJAG_03581":null,"SJAG_03592":null,"SJAG_03631":null,"SJAG_03681":null,"SJAG_03692":null,"SJAG_03704":null,"SJAG_03887":null,"SJAG_03936":null,"SJAG_04412":null,"SJAG_04455":null,"SJAG_04468":null,"SJAG_04551":null,"SJAG_04597":null,"SJAG_04666":null,"SJAG_04776":null,"SJAG_04943":null,"SJAG_05290":null,"SJAG_06270":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"regulation of cytokinesis","references_by_uniquename":{"GO_REF:0000107":null,"PMID:25866389":null,"PMID:32915139":null},"secondary_identifiers":["GO:0071775"],"synonyms":[{"name":"regulation of cell cycle cytokinesis","type":"exact"}],"termid":"GO:0032465","terms_by_termid":{"GO:0010974":null,"GO:0031030":null,"GO:0120306":null,"GO:0140279":null,"GO:0140281":null,"GO:1902412":null,"GO:1902413":null,"GO:1902472":null,"GO:1903472":null,"GO:1903473":null,"GO:1903490":null,"GO:1903499":null,"GO:1903500":null,"GO:1903501":null,"GO:1903617":null,"GO:1905757":null,"GO:1905758":null}}


id: GO:1903498
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of a bundle sheath cell.","definition_xrefs":["GO_REF:0000086","GOC:TermGenie","PMID:24517883","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bundle sheath cell differentiation","termid":"GO:1903498"}


id: PBO:0048029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fascin actin-bundling protein 1","termid":"PBO:0048029"}


id: PR:O74801
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC2D10.08c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74801"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"54S ribosomal protein yml6, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2D10.08c","synonyms":[{"name":"Spom972h-SPBC2D10.08c","type":"exact"}],"termid":"PR:O74801"}


id: GO:0099575
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates synaptic transmission by regulating a catabolic process occurring at a presynapse.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein catabolic process","termid":"GO:0042176"},{"relation_name":"is_a","term_name":"presynaptic modulation of chemical synaptic transmission","termid":"GO:0099171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0030163"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150","GO:0030163"],"is_obsolete":false,"name":"regulation of protein catabolic process at presynapse, modulating synaptic transmission","termid":"GO:0099575"}


id: PBO:0088998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Armadillo-type fold protein, human IFRD1 ortholog, implicated in transcription or signaling","termid":"PBO:0088998"}


id: GO:1901920
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any peptidyl-tyrosine dephosphorylation that is involved in activation of protein kinase activity.","definition_xrefs":["PMID:1756737","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-tyrosine dephosphorylation","termid":"GO:0035335"},{"relation_name":"part_of","term_name":"activation of protein kinase activity","termid":"GO:0032147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-tyrosine dephosphorylation involved in activation of protein kinase activity","synonyms":[{"name":"peptidyl-tyrosine dephosphorylation involved in protein kinase activation","type":"related"}],"termid":"GO:1901920"}


id: FYPO:0003253
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of one or more amino acids into the cell is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal amino acid import during vegetative growth","termid":"FYPO:0001361"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abolished amino acid import during vegetative growth","synonyms":[{"name":"abolished amino acid import across plasma membrane during vegetative growth","type":"exact"},{"name":"abolished amino acid import during mitotic cell cycle","type":"related"},{"name":"abolished amino acid import into cell","type":"exact"},{"name":"abolished amino acid uptake","type":"exact"},{"name":"amino acid import abolished","type":"exact"}],"termid":"FYPO:0003253"}


id: GO:0051629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that prevents the activation of the directed movement of epinephrine into a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inhibition of neurotransmitter uptake","termid":"GO:0051609"},{"relation_name":"is_a","term_name":"negative regulation of epinephrine uptake","termid":"GO:0051627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"inhibition of epinephrine uptake","synonyms":[{"name":"inhibition of adrenaline uptake","type":"exact"},{"name":"inhibition of epinephrine import","type":"exact"}],"termid":"GO:0051629"}


id: PR:O13684
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- csm1 gene.","definition_xrefs":["UniProtKB:O13684","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monopolin complex subunit pcs1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11E3.03","synonyms":[{"name":"Spom972h-csm1","type":"exact"},{"name":"chromosome segregation protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13684"}


id: GO:1990669
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The joining of the lipid bilayer membrane around an ERGIC-derived vesicle to the lipid bilayer membrane of the ER. Such vesicles include COPI-coated transport vesicles involved in retrograde transport.","definition_xrefs":["GOC:bhm","PMID:16038056","PMID:24119662"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle fusion with endoplasmic reticulum","termid":"GO:0048279"},{"relation_name":"part_of","term_name":"retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum","termid":"GO:0006890"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0061024","GO:0016192","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"endoplasmic reticulum-Golgi intermediate compartment (ERGIC) derived vesicle fusion with endoplasmic reticulum membrane","synonyms":[{"name":"ER-Golgi intermediate compartment derived vesicle fusion with ER membrane","type":"exact"},{"name":"endoplasmic reticulum-Golgi intermediate compartment (ERGIC) derived vesicle fusion with ER membrane","type":"exact"}],"termid":"GO:1990669"}


id: PBO:0026677
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_sodium_dodecyl_sulfate","termid":"PBO:0026677"}


id: PBO:0029083
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_ubiquitination","termid":"PBO:0029083"}


id: SO:0000279
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transcript that is bound by a protein.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"bound_by_protein","termid":"SO:0000875"},{"relation_name":"is_a","term_name":"transcript","termid":"SO:0000673"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcript_bound_by_protein","synonyms":[{"name":"transcript bound by protein","type":"exact"}],"termid":"SO:0000279"}


id: PBO:0059576
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallothionein 3","termid":"PBO:0059576"}


id: PBO:0002066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"siepin homolog","termid":"PBO:0002066"}


id: FYPO:0008243
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the size, shape, or structure of the nucleus is abnormal during sporulation.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear morphology during meiotic cell cycle","termid":"FYPO:0008242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0002403"],"is_obsolete":false,"name":"abnormal nuclear morphology during sporulation","termid":"FYPO:0008243"}


id: PBO:0057319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 518f","termid":"PBO:0057319"}


id: PBO:0045789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epididymal protein 3D, pseudogene","termid":"PBO:0045789"}


id: PBO:0073947
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC20A1 divergent transcript","termid":"PBO:0073947"}


id: GO:0062110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of DNA recombinase complex disassembly, the disaggregation of a DNA recombinase complex into its constituent components.","definition_xrefs":["PMID:30297419"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex disassembly","termid":"GO:0043242"},{"relation_name":"is_a","term_name":"regulation of DNA recombinase disassembly","termid":"GO:0062109"},{"relation_name":"negatively_regulates","term_name":"DNA recombinase disassembly","termid":"GO:1990986"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of DNA recombinase disassembly","termid":"GO:0062110"}


id: PR:Q9Y884
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pek1 gene.","definition_xrefs":["UniProtKB:Q9Y884","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAP kinase kinase skh1/pek1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC543.07","synonyms":[{"name":"Spom972h-pek1","type":"exact"}],"termid":"PR:Q9Y884"}


id: PBO:0065537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylserine synthase 1","termid":"PBO:0065537"}


id: PBO:0082223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha-arrestin, component of the Rsp5p E3-ubiquitin ligase complex; ubiquitin-binding adaptor involved in intracellular amino acid permease sorting, functions in heat shock element mediated gene expression, essential for growth in stress conditions; BUL2 has a paralog, BUL1, that arose from the whole genome duplication","termid":"PBO:0082223"}


id: PBO:0074005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 5 pseudogene 6","termid":"PBO:0074005"}


id: GO:0006995
data:
  {"annotated_genes":["SJAG_03256","SJAG_00256","SJAG_00781","SJAG_04725","SJAG_03309"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111682],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031142"},{"annotations":[99954],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1901481"},{"annotations":[98921,99957],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1901482"},{"annotations":[84027,97500],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1905287"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nitrogen.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to starvation","termid":"GO:0009267"},{"relation_name":"is_a","term_name":"cellular response to nitrogen levels","termid":"GO:0043562"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00256":null,"SJAG_00781":null,"SJAG_03256":null,"SJAG_03309":null,"SJAG_04725":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to nitrogen starvation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0006995","terms_by_termid":{"GO:0031142":null,"GO:1901481":null,"GO:1901482":null,"GO:1905287":null}}


id: PBO:0068428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, ribosomal 45S cluster 3","termid":"PBO:0068428"}


id: FYPO:0002903
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell is viable and shaped in the form of a pear in the vegetative growth phase of the life cycle. One end is rounded, while the other resembles an end of a normal rod-shaped cell. The normally shaped end has the same diameter as a wild-type cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"pear-shaped cell","termid":"FYPO:0000020"},{"relation_name":"is_a","term_name":"pear-shaped vegetative cell","termid":"FYPO:0001120"},{"relation_name":"is_a","term_name":"viable vegetative cell with abnormal cell shape","termid":"FYPO:0002197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000005"],"is_obsolete":false,"name":"viable pear-shaped vegetative cell","synonyms":[{"name":"viable ice cream cone-shaped cell during vegetative growth","type":"exact"},{"name":"viable pear-shaped cell during vegetative growth","type":"exact"},{"name":"viable pear-shaped vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002903"}


id: PBO:0082422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bifunctional triacylglycerol lipase and LPE acyltransferase; major lipid particle-localized triacylglycerol (TAG) lipase; catalyzes acylation of lysophosphatidylethanolamine (LPE), a function which is essential for sporulation; protein level and stability of Tgl3p are markedly reduced in the absence of lipid droplets; required with Tgl4p for timely bud formation","termid":"PBO:0082422"}


id: PBO:0012282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cdc48-Npl4-Ufd1 complex subunit Npl4 (predicted)","termid":"PBO:0012282"}


id: PBO:0080031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 17 like family member 17","termid":"PBO:0080031"}


id: GO:0019339
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of parathion, a highly toxic organophosphate compound. Degradation of parathion by sunlight or liver enzymes can result in the formation of the active compound paraoxon which interferes with the nervous system through cholinesterase inhibition.","definition_xrefs":["UM-BBD_pathwayID:pthn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"parathion metabolic process","termid":"GO:0018952"},{"relation_name":"is_a","term_name":"sulfur compound catabolic process","termid":"GO:0044273"},{"relation_name":"is_a","term_name":"organophosphate catabolic process","termid":"GO:0046434"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0006790"],"is_obsolete":false,"name":"parathion catabolic process","secondary_identifiers":["MetaCyc:PARATHION-DEGRADATION-PWY"],"synonyms":[{"name":"parathion breakdown","type":"exact"},{"name":"parathion catabolism","type":"exact"},{"name":"parathion degradation","type":"exact"}],"termid":"GO:0019339"}


id: GO:0009872
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A mechanism that functions to prevent self-fertilization in flowering plants that is determined by the diploid genotype of the parent plant. In sporophytic incompatibility the pollen does not germinate, consequently fertilization does not take place.","definition_xrefs":["ISBN:0387987819"],"gene_count":0,"genotype_count":0,"name":"obsolete gametophytic self-incompatibility (obsolete GO:0009872)","synonyms":[{"name":"gametophytic self-incompatibility","type":"exact"}],"termid":"GO:0009872"}


id: PBO:0077722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNR intronic transcript 1","termid":"PBO:0077722"}


id: PBO:0084257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Inositol phosphosphingolipid phospholipase C; hydrolyzes complex sphingolipids to produce ceramide; regulates the spindle assembly checkpoint upstream of PP2A-Cdc55; activates genes required for non-fermentable carbon source metabolism during the diauxic shift; mediates Na+ and Li+ halotolerance; activated by phosphatidylserine, cardiolipin and phosphatidylglycerol; mitochondrial outer membrane protein; ortholog of mammalian neutral sphingomyelinase type 2","termid":"PBO:0084257"}


id: PBO:0044739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 19A","termid":"PBO:0044739"}


id: PBO:0050358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 61","termid":"PBO:0050358"}


id: PBO:0034745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bcap family homolog, implicated in vesicle-mediated transport (predicted)","termid":"PBO:0034745"}


id: PBO:0065099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase cAMP-dependent type I regulatory subunit beta","termid":"PBO:0065099"}


id: GO:0010452
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by addition of one or more methyl groups to lysine at position 36 of the histone.","definition_xrefs":["GOC:tb","GOC:pr"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K36 methylation (obsolete GO:0010452)","synonyms":[{"name":"histone H3 K36 methylation","type":"exact"},{"name":"histone H3K36me","type":"exact"},{"name":"histone lysine H3 K36 methylation","type":"exact"}],"termid":"GO:0010452"}


id: GO:0035669
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to a toll-like receptor 4 where the TRAM adaptor mediates transduction of the signal. Toll-like 4 receptors are pattern recognition receptors that bind bacterial lipopolysaccharide (LPS) to initiate an innate immune response.","definition_xrefs":["PMID:14556004","PMID:18297073","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toll-like receptor 4 signaling pathway","termid":"GO:0034142"},{"relation_name":"is_a","term_name":"TRAM-dependent toll-like receptor signaling pathway","termid":"GO:0035668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"TRAM-dependent toll-like receptor 4 signaling pathway","synonyms":[{"name":"TRAM-dependent TLR4 signaling pathway","type":"exact"},{"name":"TRAM-dependent toll-like receptor 4 signalling pathway","type":"exact"}],"termid":"GO:0035669"}


id: GO:0099617
data:
  {"annotated_genes":["SJAG_00077","SJAG_01806","SJAG_00852","SJAG_00797","SJAG_01249","SJAG_03282"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[85644,86112,89941,92379],"is_not":false,"summary":null,"term":"GO:0099617"},{"annotations":[96573,99881],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0099616"}]},"cv_name":"cellular_component","definition":"The side (leaflet) of the mitochondrial inner membrane that faces the matrix.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lumenal side of membrane","termid":"GO:0098576"},{"relation_name":"part_of","term_name":"mitochondrial inner membrane","termid":"GO:0005743"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00077":null,"SJAG_00797":null,"SJAG_00852":null,"SJAG_01249":null,"SJAG_01806":null,"SJAG_03282":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005739"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005739","GO:0005737"],"is_obsolete":false,"name":"matrix side of mitochondrial inner membrane","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0099617","terms_by_termid":{"GO:0099616":null,"GO:0099617":null}}


id: PBO:0028092
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_multiple_cell_divisions,_unequal_chromosome_segregation","termid":"PBO:0028092"}


id: PBO:0087478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation; exonuclease of the DEDD superfamily","termid":"PBO:0087478"}


id: GO:0023043
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which information is sent from one location to another, within a living organism or between living organisms, via a lipid mediator.","definition_xrefs":["GOC:mtg_signal"],"gene_count":0,"genotype_count":0,"name":"obsolete signaling via lipid mediator (obsolete GO:0023043)","synonyms":[{"name":"signaling via lipid mediator","type":"exact"},{"name":"signalling via lipid mediator","type":"exact"}],"termid":"GO:0023043"}


id: PBO:0070944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L18","termid":"PBO:0070944"}


id: PR:Q9P7D0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBP4H10.19c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7D0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein P4H10.19c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP4H10.19c","synonyms":[{"name":"Spom972h-SPBP4H10.19c","type":"exact"}],"termid":"PR:Q9P7D0"}


id: GO:1900844
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of monodictyphenone biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular biosynthetic process","termid":"GO:0031327"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"negative regulation of secondary metabolite biosynthetic process","termid":"GO:1900377"},{"relation_name":"is_a","term_name":"regulation of monodictyphenone biosynthetic process","termid":"GO:1900843"},{"relation_name":"negatively_regulates","term_name":"monodictyphenone biosynthetic process","termid":"GO:1900815"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"negatively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0019748","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"negative regulation of monodictyphenone biosynthetic process","synonyms":[{"name":"down regulation of monodictyphenone biosynthetic process","type":"exact"},{"name":"down-regulation of monodictyphenone biosynthetic process","type":"exact"},{"name":"downregulation of monodictyphenone biosynthetic process","type":"exact"}],"termid":"GO:1900844"}


id: PBO:0013805
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae HUT1","termid":"PBO:0013805"}


id: GO:0018530
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-6-hydroxynicotine + H2O + O2 = 6-hydroxypseudooxynicotine + H2O2.","definition_xrefs":["EC:1.5.3.6","RHEA:10012"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydroxy-nicotine oxidase activity","termid":"GO:0019116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"(R)-6-hydroxynicotine oxidase activity","secondary_identifiers":["UM-BBD_reactionID:r0477","KEGG_REACTION:R07170","MetaCyc:R-6-HYDROXYNICOTINE-OXIDASE-RXN"],"synonyms":[{"name":"(R)-6-hydroxynicotine:oxygen oxidoreductase activity","type":"related"},{"name":"6-hydroxy-D-nicotine oxidase activity","type":"exact"},{"name":"D-6-hydroxynicotine oxidase activity","type":"related"}],"termid":"GO:0018530"}


id: GO:0140488
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding specifically to heme to deliver it to a transport vesicle.","definition_xrefs":["PMID:28193844","PMID:32185489"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cargo receptor activity","termid":"GO:0038024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038024"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038024","GO:0003674"],"is_obsolete":false,"name":"heme receptor activity","termid":"GO:0140488"}


id: GO:0051092
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB.","definition_xrefs":["PMID:15170030","GOC:tb","GOC:dph","PMID:15087454"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of DNA-binding transcription factor activity","termid":"GO:0051091"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0010467","GO:0006351","GO:0006355","GO:0008150"],"is_obsolete":false,"name":"positive regulation of NF-kappaB transcription factor activity","synonyms":[{"name":"NF-kappaB activation","type":"exact"},{"name":"activation of NF-kappaB","type":"exact"},{"name":"activation of NF-kappaB transcription factor","type":"exact"}],"termid":"GO:0051092"}


id: GO:1990047
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A proteinaceous, nuclear-derived structure that embeds the microtubule spindle apparatus from pole to pole in a microtubule-independent manner during mitosis.","definition_xrefs":["PMID:19273613","PMID:22855526","GOC:ans"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cytoskeleton","termid":"GO:0005856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"spindle matrix","termid":"GO:1990047"}


id: GO:0006415
data:
  {"annotated_genes":["SJAG_03658","SJAG_01696","SJAG_02812","SJAG_02704","SJAG_02601","SJAG_05221","SJAG_02189","SJAG_03232","SJAG_03949","SJAG_00308","SJAG_00338","SJAG_05265","SJAG_00286","SJAG_01518","SJAG_00642","SJAG_04283"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[61473,99522],"is_not":false,"summary":null,"term":"GO:0006415"},{"annotations":[92612,105274,91251,103281,91250,90933,87231,112133,105273,113585],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002184"},{"annotations":[100807,91632,92071,98187,94776],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070126"},{"annotations":[67495,90934,65773],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0045905"},{"annotations":[107822],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0006449"}]},"cv_name":"biological_process","definition":"The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).","definition_xrefs":["ISBN:019879276X","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex disassembly","termid":"GO:0032984"},{"relation_name":"part_of","term_name":"translation","termid":"GO:0006412"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00286":null,"SJAG_00308":null,"SJAG_00338":null,"SJAG_00642":null,"SJAG_01518":null,"SJAG_01696":null,"SJAG_02189":null,"SJAG_02601":null,"SJAG_02704":null,"SJAG_02812":null,"SJAG_03232":null,"SJAG_03658":null,"SJAG_03949":null,"SJAG_04283":null,"SJAG_05221":null,"SJAG_05265":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"translational termination","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["GO:0006443","GO:0006456"],"synonyms":[{"name":"protein synthesis termination","type":"broad"},{"name":"translation termination","type":"exact"},{"name":"translational complex disassembly","type":"exact"}],"termid":"GO:0006415","terms_by_termid":{"GO:0002184":null,"GO:0006415":null,"GO:0006449":null,"GO:0045905":null,"GO:0070126":null}}


id: GO:0001528
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A major structural protein of mammalian connective tissues; composed of one third glycine, and also rich in proline, alanine, and valine. Chains are cross-linked together via lysine residues.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete elastin (obsolete GO:0001528)","synonyms":[{"name":"elastin","type":"exact"}],"termid":"GO:0001528"}


id: PBO:0003127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alcohol dehydrogenase (predicted)","termid":"PBO:0003127"}


id: FYPO:0003866
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell when the cell is in G0 phase is higher than normal. Total protein or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level","termid":"FYPO:0000836"},{"relation_name":"is_a","term_name":"increased level of substance in cell during G0","termid":"FYPO:0002949"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0006551","FYPO:0000002"],"is_obsolete":false,"name":"increased protein level during G0","synonyms":[{"name":"increased protein accumulation during G0","type":"related"},{"name":"increased protein level during cell quiescence","type":"exact"},{"name":"increased protein level during quiescence","type":"exact"}],"termid":"FYPO:0003866"}


id: GO:0044849
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A type of ovulation cycle, which occurs in most mammalian therian females, where the endometrium is resorbed if pregnancy does not occur.","definition_xrefs":["GOC:jl","Wikipedia:Estrous_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ovulation cycle","termid":"GO:0042698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"estrous cycle","termid":"GO:0044849"}


id: PBO:0085027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nitrogen catabolite repression transcriptional regulator; inhibits GLN3 transcription in good nitrogen source; role in sequestering Gln3p and Gat1p to the cytoplasm; has glutathione peroxidase activity and can mutate to acquire GST activity; self-assembly under limited nitrogen conditions creates [URE3] prion and releases catabolite repression","termid":"PBO:0085027"}


id: PR:O13776
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ftp105 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13776"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubp5-interacting protein ftp105 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A5.16","synonyms":[{"name":"Down-regulated in multiple cancers 1 homolog 3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Hid-1 family protein ftp105 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ftp105","type":"exact"}],"termid":"PR:O13776"}


id: PBO:0042594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CMT1A duplicated region transcript 8","termid":"PBO:0042594"}


id: GO:0005502
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to 11-cis retinal, an isomer of retinal that plays an important role in the visual process in most vertebrates. 11-cis retinal combines with opsin in the rods (scotopsin) to form rhodopsin or visual purple. Retinal is one of the three compounds that makes up vitamin A.","definition_xrefs":["PMID:24403072"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinal binding","termid":"GO:0016918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0008289"],"is_obsolete":false,"name":"11-cis retinal binding","synonyms":[{"name":"11-cis retinaldehyde binding","type":"exact"},{"name":"11-cis-retinal binding","type":"narrow"},{"name":"vitamin A binding","type":"broad"}],"termid":"GO:0005502"}


id: PBO:0087281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Shuttling pre-60S factor; involved in the biogenesis of ribosomal large subunit; interacts directly with Arx1p; responsible for Tif6p recycling defects in absence of Rei1p","termid":"PBO:0087281"}


id: GO:0072063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the short descending thin limb over time, from its formation to the mature structure. The short descending thin limb is the descending thin limb of a short nephron that has a squamous epithelial morphology.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron epithelium development","termid":"GO:0072009"},{"relation_name":"is_a","term_name":"descending thin limb development","termid":"GO:0072022"},{"relation_name":"part_of","term_name":"short nephron development","termid":"GO:0072030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"short descending thin limb development","termid":"GO:0072063"}


id: PBO:0071720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 18","termid":"PBO:0071720"}


id: GO:2000896
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving an amylopectin.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macromolecule metabolic process","termid":"GO:0043170"},{"relation_name":"is_a","term_name":"carbohydrate derivative metabolic process","termid":"GO:1901135"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amylopectin metabolic process","synonyms":[{"name":"Amylopectin metabolism","type":"exact"}],"termid":"GO:2000896"}


id: GO:0099154
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A synapse that uses serotonin as a neurotransmitter.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synapse","termid":"GO:0045202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"serotonergic synapse","termid":"GO:0099154"}


id: PBO:0090867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Ppk14","termid":"PBO:0090867"}


id: PATO:0001662
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's disposition to being damaged or destroyed.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragility","termid":"PATO:0001662"}


id: PBO:0083862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Farnesyl pyrophosphate synthetase; has both dimethylallyltranstransferase and geranyltranstransferase activities; catalyzes the formation of C15 farnesyl pyrophosphate units for isoprenoid and sterol biosynthesis","termid":"PBO:0083862"}


id: PBO:0083430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YER076C","termid":"PBO:0083430"}


id: GO:0006466
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete protein disulfide-isomerase reaction (obsolete GO:0006466)","synonyms":[{"name":"protein disulfide-isomerase reaction","type":"exact"},{"name":"protein disulphide-isomerase reaction","type":"exact"}],"termid":"GO:0006466"}


id: FYPO:0004409
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to tetraplatin. Cells stop growing (and may die) at a concentration of tetraplatin that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0002683","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to tetraplatin","synonyms":[{"name":"hypersensitive to tetraplatin","type":"exact"},{"name":"sensitive to tetraplatin during mitotic cell cycle","type":"related"},{"name":"sensitive to tetraplatin during vegetative growth","type":"exact"}],"termid":"FYPO:0004409"}


id: GO:0006105
data:
  {"annotated_genes":["SJAG_03574","SJAG_03434"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109237],"is_not":false,"summary":null,"term":"GO:0006105"},{"annotations":[87831],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006540"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving succinate, also known as butanedioate or ethane dicarboxylate, the dianion of succinic acid. Succinate is an important intermediate in metabolism and a component of the TCA cycle.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid metabolic process","termid":"GO:0043648"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03434":null,"SJAG_03574":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"succinate metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"succinate metabolism","type":"exact"}],"termid":"GO:0006105","terms_by_termid":{"GO:0006105":null,"GO:0006540":null}}


id: PBO:0052134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KCNH1 intronic transcript 1","termid":"PBO:0052134"}


id: PR:O43010
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- myr1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O43010"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycylpeptide N-tetradecanoyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2G2.11","synonyms":[{"name":"NMT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-myr1","type":"exact"},{"name":"myristoyl-CoA:protein N-myristoyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"peptide N-myristoyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O43010"}


id: PBO:0072930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small Cajal body-specific RNA 10","termid":"PBO:0072930"}


id: GO:0006481
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The methylation of the C-terminal amino acid of a protein.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein methylation","termid":"GO:0006479"},{"relation_name":"is_a","term_name":"C-terminal protein amino acid modification","termid":"GO:0018410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"C-terminal protein methylation","synonyms":[{"name":"C-terminal protein amino acid methylation","type":"exact"}],"termid":"GO:0006481"}


id: PR:O13942
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC23H3.12c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13942"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C23H3.12c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23H3.12c","synonyms":[{"name":"Spom972h-SPAC23H3.12c","type":"exact"}],"termid":"PR:O13942"}


id: GO:2000415
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of fibronectin-dependent thymocyte migration.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of thymocyte migration","termid":"GO:2000412"},{"relation_name":"is_a","term_name":"regulation of fibronectin-dependent thymocyte migration","termid":"GO:2000413"},{"relation_name":"positively_regulates","term_name":"fibronectin-dependent thymocyte migration","termid":"GO:0072681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of fibronectin-dependent thymocyte migration","synonyms":[{"name":"positive regulation of fibronectin-dependent immature T cell migration","type":"related"},{"name":"positive regulation of fibronectin-dependent immature T lymphocyte migration","type":"related"},{"name":"positive regulation of fibronectin-dependent immature T-cell migration","type":"related"},{"name":"positive regulation of fibronectin-dependent immature T-lymphocyte migration","type":"related"},{"name":"positive regulation of fibronectin-dependent thymic lymphocyte migration","type":"exact"}],"termid":"GO:2000415"}


id: PR:Q9UT24
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A U5 small nuclear ribonucleoprotein 200 kDa helicase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00590","PANTHER:PTHR11752:SF7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-splicing factor brr2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC9.03c","secondary_identifiers":["UniProtKB:Q9UT24"],"synonyms":[{"name":"Spom972h-SNRNP200","type":"exact"},{"name":"pre-mRNA-splicing factor spp41 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"pre-mRNA-splicing helicase BRR2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UT24"}


id: PBO:0046153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ELAV like RNA binding protein 1","termid":"PBO:0046153"}


id: PBO:0040852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BLOC1S5-TXNDC5 readthrough (NMD candidate)","termid":"PBO:0040852"}


id: PBO:0034310
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_muscle_origin","termid":"PBO:0034310"}


id: PBO:0082578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Choline kinase; catalyzes the first step in phosphatidylcholine synthesis via the CDP-choline (Kennedy pathway); exhibits some ethanolamine kinase activity contributing to phosphatidylethanolamine synthesis via the CDP-ethanolamine pathway; CKI1 has a paralog, EKI1, that arose from the whole genome duplication","termid":"PBO:0082578"}


id: PBO:0076003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STIM1 antisense RNA 1","termid":"PBO:0076003"}


id: PBO:0040012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo repeat containing 1","termid":"PBO:0040012"}


id: PBO:0065204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRP38 domain containing A pseudogene 1","termid":"PBO:0065204"}


id: PR:O59703
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- spo9 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59703"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"geranylgeranyl pyrophosphate synthase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC36.06c","synonyms":[{"name":"(2E,6E)-farnesyl diphosphate synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Dimethylallyltranstransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Farnesyltranstransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GGPP synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GGPPSase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Geranyltranstransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-spo9","type":"exact"},{"name":"farnesyl diphosphate synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"geranylgeranyl diphosphate synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"sporulation-specific protein 9 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O59703"}


id: GO:0044176
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Thin, stiff protrusion extended by the leading edge of a motile host cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell projection","termid":"GO:0044157"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell filopodium","synonyms":[{"name":"host filopodium","type":"exact"}],"termid":"GO:0044176"}


id: PBO:0079486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin domain containing 2","termid":"PBO:0079486"}


id: PBO:0040987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bolA family member 1","termid":"PBO:0040987"}


id: GO:1902783
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a decane stimulus.","definition_xrefs":["GO_REF:0000071","PMID:23826995","GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to alkane","termid":"GO:1902779"},{"relation_name":"is_a","term_name":"response to decane","termid":"GO:1902782"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to decane","termid":"GO:1902783"}


id: GO:0072564
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cellular component organization process in which microparticles bud off from a parent cell. A microparticle is a phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell.","definition_xrefs":["GOC:mah","GOC:BHF","PMID:16373184"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component organization","termid":"GO:0016043"},{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"blood microparticle formation","synonyms":[{"name":"microparticle generation","type":"exact"},{"name":"microparticle release","type":"exact"}],"termid":"GO:0072564"}


id: PR:O14108
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- eta2 gene.","definition_xrefs":["UniProtKB:O14108","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding protein eta2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31G5.10","synonyms":[{"name":"Spom972h-eta2","type":"exact"}],"termid":"PR:O14108"}


id: PBO:0036234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein L-glutamate O-methyltransferase, implicated in DNA damage response (predicted)","termid":"PBO:0036234"}


id: GO:0018299
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The incorporation of iron into a Rieske 4Fe-4S iron-sulfur cluster via bis-L-cysteinyl bis-L-histidino diiron disulfide.","definition_xrefs":["RESID:AA0225"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-cysteine modification","termid":"GO:0018198"},{"relation_name":"is_a","term_name":"peptidyl-histidine modification","termid":"GO:0018202"},{"relation_name":"is_a","term_name":"iron incorporation into metallo-sulfur cluster","termid":"GO:0018283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0016226"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0016226"],"is_obsolete":false,"name":"iron incorporation into the Rieske iron-sulfur cluster via bis-L-cysteinyl bis-L-histidino diiron disulfide","synonyms":[{"name":"iron incorporation into the Rieske iron-sulphur cluster via bis-L-cysteinyl bis-L-histidino diiron disulphide","type":"exact"}],"termid":"GO:0018299"}


id: GO:0035284
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Division of the brain into a series of semi-repetitive parts or segments.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"segmentation","termid":"GO:0035282"},{"relation_name":"part_of","term_name":"brain development","termid":"GO:0007420"},{"relation_name":"part_of","term_name":"central nervous system segmentation","termid":"GO:0035283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"brain segmentation","termid":"GO:0035284"}


id: PBO:0081363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF197 antisense RNA 1","termid":"PBO:0081363"}


id: PR:O14143
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC3G6.07 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14143"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C3G6.07 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3G6.07","synonyms":[{"name":"Spom972h-SPAC3G6.07","type":"exact"}],"termid":"PR:O14143"}


id: GO:0098993
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the synaptic vesicle membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete anchored component of synaptic vesicle membrane (obsolete GO:0098993)","termid":"GO:0098993"}


id: PBO:0081437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 286B (pseudogene)","termid":"PBO:0081437"}


id: PBO:0043605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen beta(1-O)galactosyltransferase 2","termid":"PBO:0043605"}


id: FYPO:0003485
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the biosynthesis of DNA does not occur.","definition_xrefs":["PomBase:mah","GO:0071897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal metabolic process","termid":"FYPO:0000860"},{"relation_name":"is_a","term_name":"DNA metabolism phenotype during vegetative growth","termid":"FYPO:0001346"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000293","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished DNA synthesis","synonyms":[{"name":"abolished DNA biosynthesis","type":"exact"},{"name":"abolished DNA biosynthetic process","type":"exact"},{"name":"abolished DNA synthesis during mitotic cell cycle","type":"related"},{"name":"abolished DNA synthesis during vegetative growth","type":"exact"}],"termid":"FYPO:0003485"}


id: FYPO:0000775
data:
  {"alleles_by_uniquename":{"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_01787:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01787","name":"pck1delta","uniquename":"SJAG_01787:allele-1"},"SJAG_04551:allele-2":{"allele_type":"amino_acid_insertion","description":"82-NITCIYDLDIIINPYNFNEVYIYEE-105","gene_uniquename":"SJAG_04551","name":"Pmk1Sj(ins82-105)","uniquename":"SJAG_04551:allele-2"},"SJAG_04551:allele-4":{"allele_type":"partial_amino_acid_deletion","description":"Pmk1 from S. pombe with deleted residues 82-105","gene_uniquename":"SJAG_04551","name":"Pmk1Sp(delta82-105)","uniquename":"SJAG_04551:allele-4"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115332],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002033"},{"annotations":[115324,115328],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001838"},{"annotations":[115318],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001038"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein modification during vegetative growth","termid":"FYPO:0000329"},{"relation_name":"is_a","term_name":"abnormal protein phosphorylation","termid":"FYPO:0002677"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00610":null,"SJAG_01787":null,"SJAG_04551":null},"genotype_count":4,"genotypes_by_uniquename":{"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sj(ins82-105)(82-NITCIYDLDIIINPYNFNEVYIYEE-105)","display_uniquename":"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-2","expression":"Not assayed or wild type"}]}]},"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sp(delta82-105)(Pmk1 from S. pombe with deleted residues 82-105 Δaa)","display_uniquename":"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-4","expression":"Not assayed or wild type"}]}]},"pck1delta":{"display_name":"pck1delta","display_uniquename":"pck1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]}]},"pck2delta":{"display_name":"pck2delta","display_uniquename":"pck2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00610:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002274","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0002494"],"is_obsolete":false,"name":"abnormal protein phosphorylation during vegetative growth","references_by_uniquename":{"PMID:34198697":null},"single_locus_annotated_genes":["SJAG_01787","SJAG_00610","SJAG_04551"],"single_locus_genotype_uniquenames":["Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","pck1delta","pck2delta","Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal protein phosphorylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000775","terms_by_termid":{"FYPO:0001038":null,"FYPO:0001838":null,"FYPO:0002033":null}}


id: FYPO:0001294
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch localization is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal actin cortical patch localization","synonyms":[{"name":"normal F-actin patch localization","type":"exact"},{"name":"normal actin cortical patch localisation","type":"exact"},{"name":"normal actin cortical patch localization during mitotic cell cycle","type":"related"},{"name":"normal actin cortical patch localization during vegetative growth","type":"exact"},{"name":"normal actin cortical patch location","type":"related"},{"name":"normal actin patch localization","type":"exact"}],"termid":"FYPO:0001294"}


id: PBO:0081651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 576","termid":"PBO:0081651"}


id: GO:0120187
data:
  {"annotated_genes":["SJAG_00823"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103516],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905406"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein localization to chromatin.","definition_xrefs":["PMID:20889714","PMID:29899453"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein localization","termid":"GO:1903829"},{"relation_name":"is_a","term_name":"regulation of protein localization to chromatin","termid":"GO:1905634"},{"relation_name":"positively_regulates","term_name":"protein localization to chromatin","termid":"GO:0071168"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00823":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein localization to chromatin","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of protein localisation to chromatin","type":"exact"}],"termid":"GO:0120187","terms_by_termid":{"GO:1905406":null}}


id: FYPO:0008046
data:
  {"alleles_by_uniquename":{"SJAG_02860:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02860","name":"wcs1delta","uniquename":"SJAG_02860:allele-1"},"SJAG_05242:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05242","name":"wcs2delta","uniquename":"SJAG_05242:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115557,115558],"is_not":false,"summary":null,"term":"FYPO:0008046"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype that reflects decreased occurrence of sexual agglutination in response to blue light.","definition_xrefs":["PMID:23873862"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population phenotype","termid":"FYPO:0000003"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02860":null,"SJAG_05242":null},"genotype_count":2,"genotypes_by_uniquename":{"wcs1delta":{"display_name":"wcs1delta","display_uniquename":"wcs1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02860:allele-1","expression":"Null"}]}]},"wcs2delta":{"display_name":"wcs2delta","display_uniquename":"wcs2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05242:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003"],"is_obsolete":false,"name":"decreased sexual agglutination in response to blue light","references_by_uniquename":{"PMID:23873862":null},"single_locus_annotated_genes":["SJAG_02860","SJAG_05242"],"single_locus_genotype_uniquenames":["wcs1delta","wcs2delta"],"synonyms":[{"name":"decreased conjugation with cellular fusion in response to blue light","type":"exact"}],"termid":"FYPO:0008046","terms_by_termid":{"FYECO:0000005":null,"FYPO:0008046":null}}


id: PBO:0015259
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5.3.1.24","termid":"PBO:0015259"}


id: PBO:0055659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3099","termid":"PBO:0055659"}


id: PBO:0047737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FNDC1 intronic transcript 1","termid":"PBO:0047737"}


id: GO:1904322
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a forskolin stimulus.","definition_xrefs":["PMID:15937517","GO_REF:0000071","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to lipid","termid":"GO:0071396"},{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"cellular response to alcohol","termid":"GO:0097306"},{"relation_name":"is_a","term_name":"cellular response to ketone","termid":"GO:1901655"},{"relation_name":"is_a","term_name":"response to forskolin","termid":"GO:1904321"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to forskolin","termid":"GO:1904322"}


id: PBO:0056134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysozyme like 4","termid":"PBO:0056134"}


id: PBO:0081200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger with KRAB and SCAN domains 2","termid":"PBO:0081200"}


id: PATO:0000531
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000531 macronutrient sensitivity value (obsolete PATO:0000531)","termid":"PATO:0000531"}


id: PBO:0089131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"helper of TIM Hot15","termid":"PBO:0089131"}


id: PBO:0070103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 17 pseudogene","termid":"PBO:0070103"}


id: GO:0052119
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism on, within or near its host organism towards a lower level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete negative energy taxis in host environment (obsolete GO:0052119)","synonyms":[{"name":"negative energy taxis in response to host environment","type":"exact"}],"termid":"GO:0052119"}


id: PBO:0074395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small integral membrane protein 5","termid":"PBO:0074395"}


id: PBO:0088244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved GTPase Gpn2","termid":"PBO:0088244"}


id: FYECO:0000052
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which arachidic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ fatty acid","termid":"FYECO:0000042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ arachidic acid","termid":"FYECO:0000052"}


id: GO:0106121
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of a cobalamin metabolic process.","definition_xrefs":["PMID:29056341"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of vitamin metabolic process","termid":"GO:0046136"},{"relation_name":"is_a","term_name":"regulation of cobalamin metabolic process","termid":"GO:0106064"},{"relation_name":"is_a","term_name":"positive regulation of tetrapyrrole metabolic process","termid":"GO:1901403"},{"relation_name":"positively_regulates","term_name":"cobalamin metabolic process","termid":"GO:0009235"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006766"},{"rel_name":"positively_regulates","termid":"GO:0033013"},{"rel_name":"regulates","termid":"GO:0033013"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006766"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006766","GO:0033013","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cobalamin metabolic process","termid":"GO:0106121"}


id: GO:0000023
data:
  {"annotated_genes":["SJAG_02131","SJAG_03824"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97712,97711],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000025"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving the disaccharide maltose (4-O-alpha-D-glucopyranosyl-D-glucopyranose), an intermediate in the catabolism of glycogen and starch.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disaccharide metabolic process","termid":"GO:0005984"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02131":null,"SJAG_03824":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"maltose metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"malt sugar metabolic process","type":"exact"},{"name":"malt sugar metabolism","type":"exact"},{"name":"maltose metabolism","type":"exact"}],"termid":"GO:0000023","terms_by_termid":{"GO:0000025":null}}


id: PBO:0041962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 3","termid":"PBO:0041962"}


id: GO:0004656
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2.","definition_xrefs":["EC:1.14.11.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"procollagen-proline dioxygenase activity","termid":"GO:0019798"},{"relation_name":"is_a","term_name":"peptidyl-proline 4-dioxygenase activity","termid":"GO:0031545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674","GO:0140096"],"is_obsolete":false,"name":"procollagen-proline 4-dioxygenase activity","secondary_identifiers":["MetaCyc:1.14.11.2-RXN","RHEA:18945","Reactome:R-HSA-1650808","KEGG_REACTION:R03219"],"synonyms":[{"name":"collagen proline hydroxylase activity","type":"related"},{"name":"hydroxylase, collagen proline activity","type":"related"},{"name":"peptidyl proline hydroxylase activity","type":"broad"},{"name":"procollagen-L-proline,2-oxoglutarate:oxygen oxidoreductase (4-hydroxylating) activity","type":"related"},{"name":"procollagen-proline,2-oxoglutarate-4-dioxygenase activity","type":"exact"},{"name":"proline hydroxylase activity","type":"broad"},{"name":"proline protocollagen hydroxylase activity","type":"related"},{"name":"proline, 2-oxoglutarate dioxygenase activity","type":"broad"},{"name":"proline,2-oxoglutarate 4-dioxygenase activity","type":"broad"},{"name":"prolyl 4-hydroxylase activity","type":"broad"},{"name":"prolyl hydroxylase activity","type":"broad"},{"name":"prolyl-glycyl-peptide, 2-oxoglutarate:oxygen oxidoreductase, 4-hydroxylating activity","type":"broad"},{"name":"prolylprotocollagen dioxygenase activity","type":"related"},{"name":"prolylprotocollagen hydroxylase activity","type":"related"},{"name":"protocollagen hydroxylase activity","type":"broad"},{"name":"protocollagen proline 4-hydroxylase activity","type":"related"},{"name":"protocollagen proline dioxygenase activity","type":"related"},{"name":"protocollagen proline hydroxylase activity","type":"related"},{"name":"protocollagen prolyl hydroxylase activity","type":"related"}],"termid":"GO:0004656"}


id: GO:1901395
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transforming growth factor beta2 activation.","definition_xrefs":["GOC:TermGenie","GOC:sl"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transforming growth factor beta2 activation (obsolete GO:1901395)","synonyms":[{"name":"regulation of TGF-beta 2 activation","type":"exact"},{"name":"regulation of TGFB2 activation","type":"exact"},{"name":"regulation of TGFbeta 2 activation","type":"exact"}],"termid":"GO:1901395"}


id: PBO:0083206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the verified gene YJL065C/DLS1","termid":"PBO:0083206"}


id: PBO:0075019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 115-30","termid":"PBO:0075019"}


id: GO:0046507
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sulfite + UDP-D-glucose = H2O + UDP-6-sulfoquinovose.","definition_xrefs":["EC:3.13.1.1","RHEA:13197"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-sulfur bonds","termid":"GO:0046508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"UDPsulfoquinovose synthase activity","secondary_identifiers":["KEGG_REACTION:R05775","MetaCyc:RXN-1223"],"synonyms":[{"name":"UDP-6-sulfo-6-deoxyglucose sulfohydrolase activity","type":"related"},{"name":"UDP-sulfoquinovose synthase activity","type":"related"},{"name":"UDPsulphoquinovose synthase activity","type":"exact"},{"name":"sulfite:UDP-glucose sulfotransferase activity","type":"exact"}],"termid":"GO:0046507"}


id: GO:0016600
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains flotillin-1 and flotillin-2, and may contain associated proteins. Flotillins associate into membrane microdomains resembling caveolae.","definition_xrefs":["PMID:17600709","PMID:17206938"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"part_of","term_name":"caveola","termid":"GO:0005901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"flotillin complex","termid":"GO:0016600"}


id: GO:1904181
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of membrane depolarization.","definition_xrefs":["GOC:TermGenie","PMID:20826763","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane depolarization","termid":"GO:0003254"},{"relation_name":"is_a","term_name":"positive regulation of biological process","termid":"GO:0048518"},{"relation_name":"positively_regulates","term_name":"membrane depolarization","termid":"GO:0051899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of membrane depolarization","synonyms":[{"name":"activation of membrane depolarization","type":"narrow"},{"name":"up regulation of membrane depolarization","type":"exact"},{"name":"up-regulation of membrane depolarization","type":"exact"},{"name":"upregulation of membrane depolarization","type":"exact"}],"termid":"GO:1904181"}


id: GO:1900513
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of starch utilization system complex assembly.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex assembly","termid":"GO:0031333"},{"relation_name":"is_a","term_name":"regulation of starch utilization system complex assembly","termid":"GO:1900512"},{"relation_name":"negatively_regulates","term_name":"starch utilization system complex assembly","termid":"GO:0044574"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"negatively_regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"negative regulation of starch utilization system complex assembly","synonyms":[{"name":"down regulation of SUS complex assembly","type":"exact"},{"name":"down regulation of assembly of starch utilization system complex","type":"exact"},{"name":"down regulation of starch utilization system complex assembly","type":"exact"},{"name":"down-regulation of SUS complex assembly","type":"exact"},{"name":"down-regulation of assembly of starch utilization system complex","type":"exact"},{"name":"down-regulation of starch utilization system complex assembly","type":"exact"},{"name":"downregulation of SUS complex assembly","type":"exact"},{"name":"downregulation of assembly of starch utilization system complex","type":"exact"},{"name":"downregulation of starch utilization system complex assembly","type":"exact"},{"name":"inhibition of SUS complex assembly","type":"exact"},{"name":"inhibition of assembly of starch utilization system complex","type":"exact"},{"name":"inhibition of starch utilization system complex assembly","type":"narrow"},{"name":"negative regulation of SUS complex assembly","type":"exact"},{"name":"negative regulation of assembly of starch utilization system complex","type":"exact"}],"termid":"GO:1900513"}


id: GO:0071545
data:
  {"annotated_genes":["SJAG_00244","SJAG_04870"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84885,111148],"is_not":false,"summary":null,"term":"GO:0071545"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of an inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol phosphate metabolic process","termid":"GO:0043647"},{"relation_name":"is_a","term_name":"polyol catabolic process","termid":"GO:0046174"},{"relation_name":"is_a","term_name":"organophosphate catabolic process","termid":"GO:0046434"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00244":null,"SJAG_04870":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"inositol phosphate catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"inositol phosphate breakdown","type":"exact"},{"name":"inositol phosphate catabolism","type":"exact"},{"name":"inositol phosphate degradation","type":"exact"},{"name":"myo-inositol phosphate catabolic process","type":"narrow"}],"termid":"GO:0071545","terms_by_termid":{"GO:0071545":null}}


id: PBO:0090832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3-H4 chaperone Spt6","termid":"PBO:0090832"}


id: PBO:0031136
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_interphase_microtubule_nucleation","termid":"PBO:0031136"}


id: GO:1905281
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of retrograde transport, endosome to Golgi.","definition_xrefs":["GOC:bf","GOC:PARL","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of intracellular transport","termid":"GO:0032388"},{"relation_name":"is_a","term_name":"regulation of retrograde transport, endosome to Golgi","termid":"GO:1905279"},{"relation_name":"positively_regulates","term_name":"retrograde transport, endosome to Golgi","termid":"GO:0042147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of retrograde transport, endosome to Golgi","synonyms":[{"name":"activation of retrograde (endosome to Golgi) transport","type":"narrow"},{"name":"activation of retrograde transport, endosome to Golgi","type":"narrow"},{"name":"positive regulation of retrograde (endosome to Golgi) transport","type":"exact"},{"name":"up regulation of retrograde (endosome to Golgi) transport","type":"exact"},{"name":"up regulation of retrograde transport, endosome to Golgi","type":"exact"},{"name":"up-regulation of retrograde (endosome to Golgi) transport","type":"exact"},{"name":"up-regulation of retrograde transport, endosome to Golgi","type":"exact"},{"name":"upregulation of retrograde (endosome to Golgi) transport","type":"exact"},{"name":"upregulation of retrograde transport, endosome to Golgi","type":"exact"}],"termid":"GO:1905281"}


id: PBO:0003150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-AN1 type","termid":"PBO:0003150"}


id: PBO:0048225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth arrest and DNA damage inducible beta","termid":"PBO:0048225"}


id: PBO:0080917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YWHAQ pseudogene 6","termid":"PBO:0080917"}


id: GO:0051781
data:
  {"annotated_genes":["SJAG_03342","SJAG_03581","SJAG_04597","SJAG_03704","SJAG_01805","SJAG_04468","SJAG_02392","SJAG_04666","SJAG_05290","SJAG_03936","SJAG_01787","SJAG_01188","SJAG_00082","SJAG_03631","SJAG_04776","SJAG_02838","SJAG_00514","SJAG_01114","SJAG_00845"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90541,86152],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903501"},{"annotations":[90710,109473,83706,90542,106634],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903473"},{"annotations":[89930,86153],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903490"},{"annotations":[115222,106877,91985,99823,86916],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903617"},{"annotations":[89931,102482,86025,88540,85395,109474,113974,103153,111568,101277],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140281"},{"annotations":[90545,88541,83707],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905758"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell division.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"regulation of cell division","termid":"GO:0051302"},{"relation_name":"positively_regulates","term_name":"cell division","termid":"GO:0051301"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00514":null,"SJAG_00845":null,"SJAG_01114":null,"SJAG_01188":null,"SJAG_01787":null,"SJAG_01805":null,"SJAG_02392":null,"SJAG_02838":null,"SJAG_03342":null,"SJAG_03581":null,"SJAG_03631":null,"SJAG_03704":null,"SJAG_03936":null,"SJAG_04468":null,"SJAG_04597":null,"SJAG_04666":null,"SJAG_04776":null,"SJAG_05290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell division","references_by_uniquename":{"GO_REF:0000107":null,"PMID:25866389":null},"synonyms":[{"name":"activation of cell division","type":"narrow"},{"name":"stimulation of cell division","type":"narrow"},{"name":"up regulation of cell division","type":"exact"},{"name":"up-regulation of cell division","type":"exact"},{"name":"upregulation of cell division","type":"exact"}],"termid":"GO:0051781","terms_by_termid":{"GO:0140281":null,"GO:1903473":null,"GO:1903490":null,"GO:1903501":null,"GO:1903617":null,"GO:1905758":null}}


id: GO:1900799
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cordyol C.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol-containing compound biosynthetic process","termid":"GO:0009713"},{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"},{"relation_name":"is_a","term_name":"cordyol C metabolic process","termid":"GO:1900797"},{"relation_name":"is_a","term_name":"ether biosynthetic process","termid":"GO:1901503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"cordyol C biosynthetic process","synonyms":[{"name":"cordyol C anabolism","type":"exact"},{"name":"cordyol C biosynthesis","type":"exact"},{"name":"cordyol C formation","type":"exact"},{"name":"cordyol C synthesis","type":"exact"}],"termid":"GO:1900799"}


id: FYPO:0008018
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cells grow normally (i.e. indistinguishably from wild type) in a medium containing glutamine as the nitrogen source.","definition_xrefs":["PomBase:mlr","PMID:7903653"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0002060","FYPO:0000003","FYPO:0000139","FYPO:0002057","FYPO:0002058"],"is_obsolete":false,"name":"normal growth on glutamine nitrogen source","synonyms":[{"name":"normal cell population growth on glutamine nitrogen source","type":"exact"}],"termid":"FYPO:0008018"}


id: PBO:0050050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class I, N (pseudogene)","termid":"PBO:0050050"}


id: PBO:0068203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 510","termid":"PBO:0068203"}


id: PBO:0067883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 185","termid":"PBO:0067883"}


id: GO:0061510
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a protein is transported to, or maintained to the new mitotic spindle pole body resulting in its being distributed asymmetrically.","definition_xrefs":["GOC:vw","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asymmetric protein localization to old or new spindle pole body","termid":"GO:0061492"},{"relation_name":"is_a","term_name":"protein localization to mitotic spindle pole body","termid":"GO:1902440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"asymmetric protein localization to new mitotic spindle pole body","termid":"GO:0061510"}


id: PBO:0039282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALG1 like 11, pseudogene","termid":"PBO:0039282"}


id: PBO:0042427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle 27 pseudogene 11","termid":"PBO:0042427"}


id: PBO:0076204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO2 pseudogene 14","termid":"PBO:0076204"}


id: GO:0035879
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of lactate across a plasma membrane.","definition_xrefs":["GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lactate transmembrane transport","termid":"GO:0035873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"plasma membrane lactate transport","synonyms":[{"name":"lactate plasma membrane transport","type":"exact"}],"termid":"GO:0035879"}


id: GO:0009008
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a methyl group to a DNA molecule.","definition_xrefs":["PMID:7862522","GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"},{"relation_name":"is_a","term_name":"catalytic activity, acting on DNA","termid":"GO:0140097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140097","GO:0003674","GO:0016740","GO:0016741","GO:0003824"],"is_obsolete":false,"name":"DNA-methyltransferase activity","secondary_identifiers":["Reactome:R-HSA-5227490"],"synonyms":[{"name":"DNA methylase","type":"broad"},{"name":"DNA methyltransferase activity","type":"exact"},{"name":"DNA transmethylase activity","type":"exact"},{"name":"Type II DNA methylase","type":"related"},{"name":"deoxyribonucleate methylase activity","type":"exact"},{"name":"deoxyribonucleate methyltransferase activity","type":"exact"},{"name":"deoxyribonucleic acid methylase activity","type":"exact"},{"name":"deoxyribonucleic acid methyltransferase activity","type":"exact"},{"name":"deoxyribonucleic acid modification methylase activity","type":"related"}],"termid":"GO:0009008"}


id: PBO:0059280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L38","termid":"PBO:0059280"}


id: PBO:0109600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARB2 family member B, pseudogene","termid":"PBO:0109600"}


id: PBO:0045563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 12","termid":"PBO:0045563"}


id: GO:0047192
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-alkyl-sn-glycero-3-phosphocholine + acetyl-CoA = 1-alkyl-2-acetyl-sn-glycero-3-phosphocholine + CoA.","definition_xrefs":["EC:2.3.1.67","MetaCyc:2.3.1.67-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acetyltransferase activity","termid":"GO:0016413"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016746"],"is_obsolete":false,"name":"1-alkylglycerophosphocholine O-acetyltransferase activity","secondary_identifiers":["RHEA:18461"],"synonyms":[{"name":"1-alkyl-2-lyso-sn-glycero-3-phosphocholine acetyltransferase activity","type":"related"},{"name":"1-alkyl-2-lysolecithin acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:1-alkyl-2-lyso-sn-glycero-3-phosphocholine 2-O-acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:1-alkyl-sn-glycero-3-phosphocholine 2-O-acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:lyso-PAF acetyltransferase activity","type":"related"},{"name":"acyl-CoA:1-alkyl-sn-glycero-3-phosphocholine acyltransferase activity","type":"related"},{"name":"blood platelet-activating factor acetyltransferase activity","type":"broad"},{"name":"lyso-GPC:acetyl CoA acetyltransferase activity","type":"broad"},{"name":"lyso-platelet activating factor:acetyl-CoA acetyltransferase activity","type":"broad"},{"name":"lyso-platelet-activating factor:acetyl-CoA acetyltransferase activity","type":"broad"},{"name":"lysopaf:acetyl CoA acetyltransferase activity","type":"broad"},{"name":"platelet-activating factor acylhydrolase activity","type":"broad"},{"name":"platelet-activating factor-synthesizing enzyme activity","type":"broad"}],"termid":"GO:0047192"}


id: PBO:0035866
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_kinetochore_during_mitosis","termid":"PBO:0035866"}


id: PBO:0004494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTR family peptide transporter (predicted)","termid":"PBO:0004494"}


id: PBO:0030489
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_succinate_import","termid":"PBO:0030489"}


id: PBO:0049918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HEY2 antisense RNA 1","termid":"PBO:0049918"}


id: PBO:0070650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 21","termid":"PBO:0070650"}


id: PR:O94384
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ely5 gene.","definition_xrefs":["UniProtKB:O94384","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein ely5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A10.06c","synonyms":[{"name":"Spom972h-ely5","type":"exact"}],"termid":"PR:O94384"}


id: PBO:0029434
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_curved_septated_vegetative_cell","termid":"PBO:0029434"}


id: GO:0071672
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of smooth muscle cell chemotaxis.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of smooth muscle cell migration","termid":"GO:0014912"},{"relation_name":"is_a","term_name":"negative regulation of chemotaxis","termid":"GO:0050922"},{"relation_name":"is_a","term_name":"regulation of smooth muscle cell chemotaxis","termid":"GO:0071671"},{"relation_name":"negatively_regulates","term_name":"smooth muscle cell chemotaxis","termid":"GO:0071670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of smooth muscle cell chemotaxis","synonyms":[{"name":"down regulation of smooth muscle cell chemotaxis","type":"exact"},{"name":"down-regulation of smooth muscle cell chemotaxis","type":"exact"},{"name":"downregulation of smooth muscle cell chemotaxis","type":"exact"},{"name":"inhibition of smooth muscle cell chemotaxis","type":"narrow"}],"termid":"GO:0071672"}


id: GO:0071524
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of pyrrolysine, N6-{[(2R,3R)-3-methyl-3,4-dihydro-2H-pyrrol-2-yl]carbonyl}-L-lysine.","definition_xrefs":["GOC:dh","PMID:17204561"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid biosynthetic process","termid":"GO:0008652"},{"relation_name":"is_a","term_name":"cellular modified amino acid biosynthetic process","termid":"GO:0042398"},{"relation_name":"is_a","term_name":"amide biosynthetic process","termid":"GO:0043604"},{"relation_name":"is_a","term_name":"pyrrolysine metabolic process","termid":"GO:0071525"},{"relation_name":"is_a","term_name":"proteinogenic amino acid biosynthetic process","termid":"GO:0170038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"pyrrolysine biosynthetic process","synonyms":[{"name":"monomethylamine methyltransferase cofactor lysine adduct biosynthetic process","type":"exact"},{"name":"pyrrolysine anabolism","type":"exact"},{"name":"pyrrolysine biosynthesis","type":"exact"},{"name":"pyrrolysine formation","type":"exact"},{"name":"pyrrolysine synthesis","type":"exact"}],"termid":"GO:0071524"}


id: PBO:0056420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARCKS like 1 pseudogene 1","termid":"PBO:0056420"}


id: PBO:0058636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6768","termid":"PBO:0058636"}


id: PBO:0076136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUCLA2 pseudogene 1","termid":"PBO:0076136"}


id: PATO:0002167
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A protruding quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded out of the surface or boundary of another entity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protruding out of","termid":"PATO:0001646"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"herniated out of","termid":"PATO:0002167"}


id: GO:0005377
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete intracellular copper ion transporter (obsolete GO:0005377)","synonyms":[{"name":"intracellular copper ion transporter","type":"exact"},{"name":"intracellular copper transporter","type":"exact"}],"termid":"GO:0005377"}


id: GO:0052659
data:
  {"annotated_genes":["SJAG_00063"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[104406],"is_not":false,"summary":null,"term":"GO:0052659"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 1D-myo-inositol 1,3,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,3,4-trisphosphate + phosphate.","definition_xrefs":["RHEA:11392","EC:3.1.3.56"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol tetrakisphosphate phosphatase activity","termid":"GO:0052743"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00063":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN-8730","Reactome:R-HSA-1855218","KEGG_REACTION:R03430","Reactome:R-HSA-1855213"],"synonyms":[{"name":"5PTase activity","type":"related"},{"name":"D-myo-inositol (1,3,4,5)-polyphosphate 5-phosphatase activity","type":"related"},{"name":"Ins(1,3,4,5)P(4) 5-phosphatase activity","type":"related"},{"name":"Ins(1,3,4,5)P4 5-phosphatase activity","type":"related"},{"name":"inositol polyphosphate-5-phosphatase activity","type":"broad"},{"name":"type I inositol-polyphosphate phosphatase activity","type":"related"},{"name":"type II inositol polyphosphate 5-phosphatase activity","type":"related"}],"termid":"GO:0052659","terms_by_termid":{"GO:0052659":null}}


id: PBO:0058051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4272","termid":"PBO:0058051"}


id: PBO:0035735
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K9_trimethylation_at_centromere_during_vegetative_growth","termid":"PBO:0035735"}


id: PBO:0056551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MCL1 apoptosis regulator, BCL2 family member","termid":"PBO:0056551"}


id: GO:1990673
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the ERGIC membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["PMID:24119662","GOC:bhm","PMID:16038056"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane (obsolete GO:1990673)","synonyms":[{"name":"intrinsic component of endoplasmic reticulum-Golgi intermediate compartment membrane","type":"exact"}],"termid":"GO:1990673"}


id: PBO:0048131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fucosyltransferase 11","termid":"PBO:0048131"}


id: GO:1901855
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 5,6,7,8-tetrahydrosarcinapterin.","definition_xrefs":["GOC:yaf","GOC:TermGenie","UniPathway:UPA00069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tricarboxylic acid biosynthetic process","termid":"GO:0072351"},{"relation_name":"is_a","term_name":"5,6,7,8-tetrahydrosarcinapterin metabolic process","termid":"GO:1901853"},{"relation_name":"is_a","term_name":"tetrahydromethanopterin biosynthetic process","termid":"GO:2001118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0042559"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0042559"],"is_obsolete":false,"name":"5,6,7,8-tetrahydrosarcinapterin biosynthetic process","synonyms":[{"name":"5,6,7,8-tetrahydrosarcinapterin anabolism","type":"exact"},{"name":"5,6,7,8-tetrahydrosarcinapterin biosynthesis","type":"exact"},{"name":"5,6,7,8-tetrahydrosarcinapterin formation","type":"exact"},{"name":"5,6,7,8-tetrahydrosarcinapterin synthesis","type":"exact"}],"termid":"GO:1901855"}


id: GO:0032508
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands.","definition_xrefs":["GOC:mah","GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA geometric change","termid":"GO:0032392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"DNA duplex unwinding","synonyms":[{"name":"DNA unwinding","type":"exact"},{"name":"duplex DNA melting","type":"exact"}],"termid":"GO:0032508"}


id: PBO:0081503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 407","termid":"PBO:0081503"}


id: GO:0102673
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a fatty aldehyde + H2O + NAD+ = a fatty acid + 2 H+ + NADH.","definition_xrefs":["RHEA:49832"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde dehydrogenase (NAD+) activity","termid":"GO:0004029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"fatty aldehyde dehydrogenase (NAD+) activity","secondary_identifiers":["MetaCyc:RXN-4142"],"synonyms":[{"name":"fatty aldehyde dehydrogenase activity","type":"exact"}],"termid":"GO:0102673"}


id: GO:0042791
data:
  {"annotated_genes":["SJAG_02815"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105244],"is_not":false,"summary":null,"term":"GO:0042791"}]},"cv_name":"biological_process","definition":"The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template by RNA polymerase III (Pol III), originating at a type 1 RNA polymerase III promoter.","definition_xrefs":["ISBN:0321000382","PMID:12381659","GOC:jl","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription by RNA polymerase III","termid":"GO:0006383"},{"relation_name":"is_a","term_name":"rRNA transcription","termid":"GO:0009303"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02815":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006351","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"5S class rRNA transcription by RNA polymerase III","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"5S class rRNA transcription from RNA polymerase III type 1 promoter","type":"related"},{"name":"5S rRNA transcription","type":"exact"}],"termid":"GO:0042791","terms_by_termid":{"GO:0042791":null}}


id: GO:2000976
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any regulation of transcription from RNA polymerase II promoter that is involved in detection of glucose.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter involved in detection of glucose (obsolete GO:2000976)","synonyms":[{"name":"global transcription regulation from Pol II promoter involved in detection of glucose","type":"related"},{"name":"global transcription regulation from Pol II promoter involved in glucose detection","type":"related"},{"name":"global transcription regulation from Pol II promoter involved in glucose perception","type":"related"},{"name":"global transcription regulation from Pol II promoter involved in glucose sensing","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter involved in detection of glucose","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter involved in glucose detection","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter involved in glucose perception","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter involved in glucose sensing","type":"related"},{"name":"regulation of global transcription from Pol II promoter involved in detection of glucose","type":"related"},{"name":"regulation of global transcription from Pol II promoter involved in glucose detection","type":"related"},{"name":"regulation of global transcription from Pol II promoter involved in glucose perception","type":"related"},{"name":"regulation of global transcription from Pol II promoter involved in glucose sensing","type":"related"},{"name":"regulation of transcription from Pol II promoter involved in detection of glucose","type":"exact"},{"name":"regulation of transcription from Pol II promoter involved in glucose detection","type":"exact"},{"name":"regulation of transcription from Pol II promoter involved in glucose perception","type":"related"},{"name":"regulation of transcription from Pol II promoter involved in glucose sensing","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter involved in glucose detection","type":"exact"},{"name":"regulation of transcription from RNA polymerase II promoter involved in glucose perception","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter involved in glucose sensing","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global involved in detection of glucose","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global involved in glucose detection","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global involved in glucose perception","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global involved in glucose sensing","type":"related"}],"termid":"GO:2000976"}


id: GO:0060130
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a thyroid-stimulating hormone-secreting cell over time, from its formation to the mature structure. A thyroid-stimulating hormone-secreting cell is a basophil cell of the anterior pituitary that produces thyroid stimulating hormone, thyrotrophin.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glandular epithelial cell development","termid":"GO:0002068"},{"relation_name":"is_a","term_name":"neuron development","termid":"GO:0048666"},{"relation_name":"part_of","term_name":"thyroid-stimulating hormone-secreting cell differentiation","termid":"GO:0060129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"thyroid-stimulating hormone-secreting cell development","synonyms":[{"name":"TSH-secreting cell development","type":"exact"},{"name":"beta-basophil development","type":"exact"},{"name":"thyroid stimulating hormone secreting cell development","type":"exact"},{"name":"thyrotrope development","type":"exact"},{"name":"thyrotroph development","type":"exact"}],"termid":"GO:0060130"}


id: PBO:0069521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 790, pseudogene","termid":"PBO:0069521"}


id: GO:0046712
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of GDP, guanosine 5'-diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide catabolic process","termid":"GO:0009154"},{"relation_name":"is_a","term_name":"purine ribonucleoside diphosphate catabolic process","termid":"GO:0009181"},{"relation_name":"is_a","term_name":"GDP metabolic process","termid":"GO:0046710"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"GDP catabolic process","synonyms":[{"name":"GDP breakdown","type":"exact"},{"name":"GDP catabolism","type":"exact"},{"name":"GDP degradation","type":"exact"}],"termid":"GO:0046712"}


id: PBO:0061043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIPA2 pseudogene 4","termid":"PBO:0061043"}


id: GO:0070430
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of the nucleotide-binding oligomerization domain containing 1 (NOD1) pathway.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway","termid":"GO:0070426"},{"relation_name":"is_a","term_name":"regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway","termid":"GO:0070428"},{"relation_name":"positively_regulates","term_name":"nucleotide-binding oligomerization domain containing 1 signaling pathway","termid":"GO:0070427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway","synonyms":[{"name":"positive regulation of NOD1 signaling pathway","type":"exact"},{"name":"positive regulation of nucleotide-binding oligomerization domain containing 1 signalling pathway","type":"exact"}],"termid":"GO:0070430"}


id: PBO:0003738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IMP dehydrogenase Gua1 (predicted)","termid":"PBO:0003738"}


id: GO:0004808
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-aminomethyl-2-thiouridine34 in tRNA + S-adenosyl-L-methionine = 5-methylaminomethyl-2-thiouridine34 in tRNA + H+ + S-adenosyl-L-homocysteine. This enzyme specifically adds the terminal methyl group of 5-[(methylamino)methyl]-2-thiouridylate.","definition_xrefs":["RHEA:19569"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"},{"relation_name":"is_a","term_name":"tRNA (uridine) methyltransferase activity","termid":"GO:0016300"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0140098","GO:0140101","GO:0003674","GO:0016740","GO:0016741"],"is_obsolete":false,"name":"tRNA (5-methylaminomethyl-2-thiouridylate)(34)-methyltransferase activity","secondary_identifiers":["EC:2.1.1.61","KEGG_REACTION:R00601","GO:0016425","MetaCyc:RXN0-5144"],"synonyms":[{"name":"tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity","type":"exact"},{"name":"tRNA 5-methylaminomethyl-2-thiouridylate 5'-methyltransferase activity","type":"related"}],"termid":"GO:0004808"}


id: PR:O74949
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC553.12c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C553.12c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC553.12c","synonyms":[{"name":"Spom972h-SPCC553.12c","type":"exact"}],"termid":"PR:O74949"}


id: PR:Q09720
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A proteasome subunit beta type-2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11599:SF6","OMA:SCHPO00153","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome subunit beta type-4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31A2.04c","secondary_identifiers":["UniProtKB:Q09720"],"synonyms":[{"name":"Spom972h-PSMB2","type":"exact"}],"termid":"PR:Q09720"}


id: GO:0018220
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent attachment of a palmitoyl group to an oxygen (O) atom in a threonine residue to form peptidyl-O-palmitoyl-L-threonine.","definition_xrefs":["RESID:AA0079"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-threonine modification","termid":"GO:0018210"},{"relation_name":"is_a","term_name":"protein palmitoylation","termid":"GO:0018345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0042158"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0042158"],"is_obsolete":false,"name":"peptidyl-threonine palmitoylation","synonyms":[{"name":"peptidyl-threonine O-palmitoylation","type":"exact"}],"termid":"GO:0018220"}


id: PR:Q9UUG0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fas1 gene.","definition_xrefs":["UniProtKB:Q9UUG0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid synthase subunit beta (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC926.09c","synonyms":[{"name":"Spom972h-fas1","type":"exact"}],"termid":"PR:Q9UUG0"}


id: PBO:0074594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 7B","termid":"PBO:0074594"}


id: GO:0048644
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of muscle are generated and organized.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ morphogenesis","termid":"GO:0009887"},{"relation_name":"part_of","term_name":"muscle organ development","termid":"GO:0007517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"muscle organ morphogenesis","termid":"GO:0048644"}


id: PBO:0039459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD10 intronic transcript 1","termid":"PBO:0039459"}


id: PBO:0063455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDE11A antisense RNA 1","termid":"PBO:0063455"}


id: PBO:0075012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 115-23","termid":"PBO:0075012"}


id: FYPO:0008213
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population phenotype in which cell growth is increased relative to normal in a medium containing lactate as the carbon source.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased vegetative cell population growth","termid":"FYPO:0004557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0002058","FYPO:0005447","FYPO:0002057","FYPO:0000139"],"is_obsolete":false,"name":"increased vegetative cell population growth on lactate carbon source","termid":"FYPO:0008213"}


id: PBO:0038847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase with thrombospondin type 1 motif 16","termid":"PBO:0038847"}


id: GO:0003778
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete dynactin motor (obsolete GO:0003778)","synonyms":[{"name":"dynactin motor","type":"exact"}],"termid":"GO:0003778"}


id: GO:0102525
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-argininium(1+) + 2-oxoglutarate + O2 = (3S)-3-hydroxy-L-arginine(1+) + succinate + carbon dioxide.","definition_xrefs":["GOC:pz","RHEA:36607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"2-oxoglutarate, L-arginine oxygenase (succinate-forming) activity","secondary_identifiers":["MetaCyc:RXN-14542","EC:1.14.11.41"],"termid":"GO:0102525"}


id: PBO:0043557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type IV alpha 6 chain","termid":"PBO:0043557"}


id: GO:1903240
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of positive regulation of the force of heart contraction by chemical signal.","definition_xrefs":["PMID:17242280","GOC:TermGenie","GOC:rl","GO_REF:0000058","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of positive regulation of the force of heart contraction by chemical signal (obsolete GO:1903240)","synonyms":[{"name":"down regulation of positive regulation of the force of heart contraction by chemical signal","type":"exact"},{"name":"down regulation of positive regulation of the force of heart muscle contraction by chemical signal","type":"exact"},{"name":"down-regulation of positive regulation of the force of heart contraction by chemical signal","type":"exact"},{"name":"down-regulation of positive regulation of the force of heart muscle contraction by chemical signal","type":"exact"},{"name":"downregulation of positive regulation of the force of heart contraction by chemical signal","type":"exact"},{"name":"downregulation of positive regulation of the force of heart muscle contraction by chemical signal","type":"exact"},{"name":"inhibition of positive regulation of the force of heart contraction by chemical signal","type":"narrow"},{"name":"inhibition of positive regulation of the force of heart muscle contraction by chemical signal","type":"narrow"},{"name":"negative regulation of positive regulation of the force of heart contraction by chemical signal","type":"exact"},{"name":"negative regulation of positive regulation of the force of heart muscle contraction by chemical signal","type":"exact"}],"termid":"GO:1903240"}


id: PBO:0061290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuronal PAS domain protein 2","termid":"PBO:0061290"}


id: PR:O74363
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sqs1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G-patch and R3H domain-containing protein C30B4.02c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC30B4.02c","synonyms":[{"name":"Spom972h-sqs1","type":"exact"}],"termid":"PR:O74363"}


id: GO:0052227
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism in a second organism resulting in the breakdown of substances, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete catabolism of substance in other organism involved in symbiotic interaction (obsolete GO:0052227)","synonyms":[{"name":"catabolism of substance in other organism during symbiotic interaction","type":"related"}],"termid":"GO:0052227"}


id: GO:0001897
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process mediated by a symbiont that results in the death of a host cell by means of the rupture of cell membranes and the loss of cytoplasm. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:11423190","PMID:27405240","PMID:24204713","PMID:23748204"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated killing of host cell","termid":"GO:0001907"},{"relation_name":"is_a","term_name":"cytolysis in another organism","termid":"GO:0051715"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated cytolysis of host cell","synonyms":[{"name":"cytolysis by organism of host cells","type":"exact"},{"name":"cytolysis by symbiont of host cells","type":"exact"},{"name":"pathogenesis","type":"related"}],"termid":"GO:0001897"}


id: GO:0003709
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Functions to initiate or regulate RNA polymerase III transcription.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete RNA polymerase III transcription factor activity (obsolete GO:0003709)","synonyms":[{"name":"RNA polymerase III transcription factor activity","type":"exact"}],"termid":"GO:0003709"}


id: PBO:0066169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBIS pseudogene 2","termid":"PBO:0066169"}


id: PATO:0002082
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A broken quality inhering in a bearer by virtue of the bearer's being still one contiguous whole but structurally damaged such that in danger of become two or more.","definition_xrefs":["PATOC:CJM"],"direct_ancestors":[{"relation_name":"is_a","term_name":"broken","termid":"PATO:0001444"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partially broken","termid":"PATO:0002082"}


id: GO:0001895
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A tissue homeostatic process involved in the maintenance of an internal equilibrium within the retina of the eye, including control of cellular proliferation and death and control of metabolic function.","definition_xrefs":["GOC:add","PMID:15365178","GOC:tb","GOC:dph","PMID:15365173"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue homeostasis","termid":"GO:0001894"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"retina homeostasis","termid":"GO:0001895"}


id: PR:P41000
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cps3 gene.","definition_xrefs":["UniProtKB:P41000","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein cps3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3A11.02","synonyms":[{"name":"Spom972h-cps3","type":"exact"},{"name":"meiotically up-regulated gene 188 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P41000"}


id: GO:1905525
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A negative regulation of transcription from RNA polymerase II promoter in response to iron that results in regulation of ferrichrome biosynthetic process.","definition_xrefs":["PMID:20435771","GO_REF:0000063","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of ferrichrome biosynthetic process by negative regulation of transcription from RNA polymerase II promoter in response to iron (obsolete GO:1905525)","synonyms":[{"name":"regulation of ferrichrome anabolism by down regulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome anabolism by down-regulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome anabolism by downregulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome anabolism by inhibition of transcription from RNA polymerase II promoter in response to iron","type":"narrow"},{"name":"regulation of ferrichrome anabolism by negative regulation of transcription from Pol II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome anabolism by negative regulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome biosynthesis by down regulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome biosynthesis by down-regulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome biosynthesis by downregulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome biosynthesis by inhibition of transcription from RNA polymerase II promoter in response to iron","type":"narrow"},{"name":"regulation of ferrichrome biosynthesis by negative regulation of transcription from Pol II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome biosynthesis by negative regulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome biosynthetic process by down regulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome biosynthetic process by down-regulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome biosynthetic process by downregulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome biosynthetic process by inhibition of transcription from RNA polymerase II promoter in response to iron","type":"narrow"},{"name":"regulation of ferrichrome biosynthetic process by negative regulation of transcription from Pol II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome biosynthetic process, peptide formation by down regulation of transcription from RNA polymerase II promoter in response to iron","type":"narrow"},{"name":"regulation of ferrichrome biosynthetic process, peptide formation by down-regulation of transcription from RNA polymerase II promoter in response to iron","type":"narrow"},{"name":"regulation of ferrichrome biosynthetic process, peptide formation by downregulation of transcription from RNA polymerase II promoter in response to iron","type":"narrow"},{"name":"regulation of ferrichrome biosynthetic process, peptide formation by inhibition of transcription from RNA polymerase II promoter in response to iron","type":"narrow"},{"name":"regulation of ferrichrome biosynthetic process, peptide formation by negative regulation of transcription from Pol II promoter in response to iron","type":"narrow"},{"name":"regulation of ferrichrome biosynthetic process, peptide formation by negative regulation of transcription from RNA polymerase II promoter in response to iron","type":"narrow"},{"name":"regulation of ferrichrome biosynthetic process, peptide modification by down regulation of transcription from RNA polymerase II promoter in response to iron","type":"narrow"},{"name":"regulation of ferrichrome biosynthetic process, peptide modification by down-regulation of transcription from RNA polymerase II promoter in response to iron","type":"narrow"},{"name":"regulation of ferrichrome biosynthetic process, peptide modification by downregulation of transcription from RNA polymerase II promoter in response to iron","type":"narrow"},{"name":"regulation of ferrichrome biosynthetic process, peptide modification by inhibition of transcription from RNA polymerase II promoter in response to iron","type":"narrow"},{"name":"regulation of ferrichrome biosynthetic process, peptide modification by negative regulation of transcription from Pol II promoter in response to iron","type":"narrow"},{"name":"regulation of ferrichrome biosynthetic process, peptide modification by negative regulation of transcription from RNA polymerase II promoter in response to iron","type":"narrow"},{"name":"regulation of ferrichrome formation by down regulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome formation by down-regulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome formation by downregulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome formation by inhibition of transcription from RNA polymerase II promoter in response to iron","type":"narrow"},{"name":"regulation of ferrichrome formation by negative regulation of transcription from Pol II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome formation by negative regulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome synthesis by down regulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome synthesis by down-regulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome synthesis by downregulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome synthesis by inhibition of transcription from RNA polymerase II promoter in response to iron","type":"narrow"},{"name":"regulation of ferrichrome synthesis by negative regulation of transcription from Pol II promoter in response to iron","type":"exact"},{"name":"regulation of ferrichrome synthesis by negative regulation of transcription from RNA polymerase II promoter in response to iron","type":"exact"}],"termid":"GO:1905525"}


id: PBO:0017997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"siderophore-iron transmembrane transporter Str1","termid":"PBO:0017997"}


id: PBO:0082802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of U1 snRNP required for mRNA splicing via spliceosome; substrate of the arginine methyltransferase Hmt1p; may interact with poly(A) polymerase to regulate polyadenylation; homolog of human U1 70K protein; protein abundance increases in response to DNA replication stress","termid":"PBO:0082802"}


id: GO:1902496
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any protein binding that is involved in negative regulation of telomere maintenance via telomerase.","definition_xrefs":["GOC:TermGenie","GOC:dph","GOC:vw","PMID:24013504"],"gene_count":0,"genotype_count":0,"name":"obsolete protein binding involved in negative regulation of telomere maintenance via telomerase (obsolete GO:1902496)","synonyms":[{"name":"protein binding involved in down regulation of telomere maintenance via telomerase activity","type":"exact"},{"name":"protein binding involved in down-regulation of telomere maintenance via telomerase activity","type":"exact"},{"name":"protein binding involved in downregulation of telomere maintenance via telomerase activity","type":"exact"},{"name":"protein binding involved in inhibition of telomere maintenance via telomerase","type":"narrow"}],"termid":"GO:1902496"}


id: GO:0052577
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (-)-germacrene D + diphosphate.","definition_xrefs":["EC:4.2.3.22"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpene synthase activity","termid":"GO:0010334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"germacrene-D synthase activity","secondary_identifiers":["MetaCyc:RXN-8562","KEGG_REACTION:R07648","RHEA:12016"],"synonyms":[{"name":"2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase [(-)-Germacrene D-forming] activity","type":"related"}],"termid":"GO:0052577"}


id: PBO:0084039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI-anchored protein involved in cell wall remodeling; involved in the assembly of the cell wall chitin-glucan structure and repair of damage caused by the antifungal agent polyhexamethylene biguanide; role in the cell wall integrity pathway; expression is upregulated in response to cell wall stress; transported to the cell surface after Pmt1p-Pmt2p-mediated O-mannosylation, colocalizing with bud scars","termid":"PBO:0084039"}


id: PBO:0083910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FMN-dependent NAD(P)H:quinone reductase; role in apoptosis-like cell death; may be involved in quinone detoxification; expression elevated at low temperature; sequesters the Cin5p transcription factor in the cytoplasm in complex with the proteasome under reducing conditions","termid":"PBO:0083910"}


id: PBO:0085195
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ornithine transporter of the mitochondrial inner membrane; exports ornithine from mitochondria as part of arginine biosynthesis; functionally complemented by human ortholog, SLC25A15, which is associated with hyperammonaemia-hyperornithinaemia-homocitrullinuria (HHH) syndrome, but HHH-associated variants fail to complement","termid":"PBO:0085195"}


id: PBO:0065272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRR34 long non-coding RNA","termid":"PBO:0065272"}


id: PBO:0074765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 1C","termid":"PBO:0074765"}


id: PBO:0053217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galectin 14","termid":"PBO:0053217"}


id: PBO:0089467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GID complex armadillo repeat subunit Gid5","termid":"PBO:0089467"}


id: PBO:0079871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF1 RNA helicase and ATPase","termid":"PBO:0079871"}


id: GO:0010606
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of the aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body.","definition_xrefs":["GOC:dph","GOC:tb","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytoplasmic mRNA processing body assembly","termid":"GO:0010603"},{"relation_name":"is_a","term_name":"positive regulation of organelle assembly","termid":"GO:1902117"},{"relation_name":"positively_regulates","term_name":"P-body assembly","termid":"GO:0033962"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"positive regulation of cytoplasmic mRNA processing body assembly","termid":"GO:0010606"}


id: SO:0001344
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"5_methyluridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_methyluridine","secondary_identifiers":["http://en.wikipedia.org/wiki/5-methyluridine","RNAMOD:052"],"synonyms":[{"name":"5-methyluridine","type":"exact"},{"name":"five methyluridine","type":"exact"},{"name":"m5U","type":"exact"}],"termid":"SO:0001344"}


id: FYPO:0002746
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-valine measured in the cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in cell during vegetative growth","termid":"FYPO:0001316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001312","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal cellular valine level","synonyms":[{"name":"normal cellular L-valine level","type":"exact"},{"name":"normal cellular valine level during mitotic cell cycle","type":"related"},{"name":"normal cellular valine level during vegetative growth","type":"exact"},{"name":"normal level of valine in cell","type":"exact"}],"termid":"FYPO:0002746"}


id: GO:0047785
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + cortisol = adenosine 3',5'-diphosphate + cortisol 21-sulfate + H+.","definition_xrefs":["EC:2.8.2.18","RHEA:11884"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfotransferase activity","termid":"GO:0008146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016782","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"cortisol sulfotransferase activity","secondary_identifiers":["MetaCyc:CORTISOL-SULFOTRANSFERASE-RXN","KEGG_REACTION:R02839"],"synonyms":[{"name":"3'-phosphoadenylyl-sulfate:cortisol 21-sulfotransferase activity","type":"related"},{"name":"cortisol sulphotransferase activity","type":"exact"},{"name":"glucocorticoid sulfotransferase activity","type":"related"},{"name":"glucocorticosteroid sulfotransferase activity","type":"broad"}],"termid":"GO:0047785"}


id: PBO:0001114
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.2.1.36","termid":"PBO:0001114"}


id: FYPO:0007767
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of thiabendazole binding by a gene product (usually a protein) in a mutant is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PMID:33925026","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652"],"is_obsolete":false,"name":"decreased thiabendazole binding","synonyms":[{"name":"decreased TBZ binding","type":"exact"},{"name":"reduced TBZ binding","type":"exact"},{"name":"reduced thiabendazole binding","type":"exact"}],"termid":"FYPO:0007767"}


id: PBO:0038628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atypical chemokine receptor 4","termid":"PBO:0038628"}


id: PBO:0074012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 6 pseudogene 3","termid":"PBO:0074012"}


id: PBO:0038506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily D member 1 pseudogene 1","termid":"PBO:0038506"}


id: PBO:0085973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; predicted to encode a pyridoxal 5'-phosphate synthase based on sequence similarity but purified protein does not possess this activity, nor does it bind flavin mononucleotide (FMN); null mutant displays increased resistance to antifungal agents gliotoxin, cycloheximide and H2O2; YLR456W has a paralog, YPR172W, that arose from the whole genome duplication","termid":"PBO:0085973"}


id: PBO:0042486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cadherin 11","termid":"PBO:0042486"}


id: FYPO:0005590
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of cardiolipin measured in a cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular phosphorus level","termid":"FYPO:0001543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal cellular cardiolipin level","synonyms":[{"name":"normal cellular cardiolipin accumulation","type":"related"},{"name":"normal cellular cardiolipin level during mitotic cell cycle","type":"related"},{"name":"normal cellular cardiolipin level during vegetative growth","type":"exact"}],"termid":"FYPO:0005590"}


id: CHEBI:15652
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-xanthylic acid","termid":"CHEBI:15652"}


id: PBO:0085377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane arginine permease; requires phosphatidyl ethanolamine (PE) for localization, exclusively associated with lipid rafts; mutation confers canavanine resistance; CAN1 has a paralog, ALP1, that arose from the whole genome duplication","termid":"PBO:0085377"}


id: GO:1904202
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of iodide transport.","definition_xrefs":["PMID:20392814","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of monoatomic anion transport","termid":"GO:1903792"},{"relation_name":"is_a","term_name":"regulation of iodide transport","termid":"GO:1904201"},{"relation_name":"negatively_regulates","term_name":"iodide transport","termid":"GO:0015705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of iodide transport","synonyms":[{"name":"down regulation of iodide transport","type":"exact"},{"name":"down-regulation of iodide transport","type":"exact"},{"name":"downregulation of iodide transport","type":"exact"},{"name":"inhibition of iodide transport","type":"narrow"}],"termid":"GO:1904202"}


id: PBO:0069491
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 758, pseudogene","termid":"PBO:0069491"}


id: GO:0097396
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-17 stimulus.","definition_xrefs":["GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cytokine","termid":"GO:0034097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to interleukin-17","synonyms":[{"name":"response to IL-17","type":"exact"}],"termid":"GO:0097396"}


id: GO:2000192
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of fatty acid transport.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of lipid transport","termid":"GO:0032369"},{"relation_name":"is_a","term_name":"negative regulation of organic acid transport","termid":"GO:0032891"},{"relation_name":"is_a","term_name":"regulation of fatty acid transport","termid":"GO:2000191"},{"relation_name":"negatively_regulates","term_name":"fatty acid transport","termid":"GO:0015908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of fatty acid transport","termid":"GO:2000192"}


id: PR:O14353
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A biotin--protein ligase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12835:SF4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biotin--protein ligase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC30D10.07c","secondary_identifiers":["UniProtKB:O14353"],"synonyms":[{"name":"SPBC30D10.07c","type":"related"},{"name":"Spom972h-HLCS","type":"exact"},{"name":"biotin apo-protein ligase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14353"}


id: PBO:0064726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 62","termid":"PBO:0064726"}


id: PBO:0079907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquinol-cytochrome c reductase core protein 2","termid":"PBO:0079907"}


id: PR:000050532
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H4, hhf2 gene translation product (Schizosaccharomyces pombe) that has had the initiator methionine removed and that has been monomethylated at the position equivalent to Lys-21 of the amino acid sequence represented by UniProtKB:P09322. UniProtKB:P09322, 2-103, Lys-21, MOD:00085.","definition_xrefs":["PMID:22150589","PomBase:VW","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H4, hhf2 gene translation product (Schizosaccharomyces pombe)","termid":"PR:000050527"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hhf2/Me1:(K20)","pombase_gene_id":"SPBC8D2.03c","synonyms":[{"name":"PRO_0000158357, Lys-21, MOD:00085","type":"exact"},{"name":"PomBase_original_PRO_term_name: histone H4, hhf2 gene translation product, initiator methionine removed monomethylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-hhf2/InitMet-/Me1:1","type":"exact"},{"name":"UniProtKB:P09322, 2-103, Lys-21, MOD:00085","type":"broad"},{"name":"hhf2/Me1:(K20)","type":"exact"},{"name":"histone H4 K20me1 (Schizosaccharomyces pombe)","type":"broad"},{"name":"histone H4 hhf2 K20me1 (Schizosaccharomyces pombe)","type":"exact"}],"termid":"PR:000050532"}


id: GO:0102875
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-18:2-2-18:2-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor = 1-18:3-2-18:2-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-18:2-2-18:2-monogalactosyldiacylglycerol desaturase activity (obsolete GO:0102875)","termid":"GO:0102875"}


id: PBO:0029929
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_IMP_binding","termid":"PBO:0029929"}


id: FYPO:0004306
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of CTD phosphatase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein phosphatase activity","termid":"FYPO:0001757"},{"relation_name":"is_a","term_name":"abnormal CTD phosphatase activity","termid":"FYPO:0004305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000661","FYPO:0000654","FYPO:0000002","FYPO:0001985","FYPO:0000707","FYPO:0006551","FYPO:0000652"],"is_obsolete":false,"name":"decreased CTD phosphatase activity","synonyms":[{"name":"reduced CTD phosphatase activity","type":"exact"}],"termid":"FYPO:0004306"}


id: PBO:0090775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone lysine H3-K9 methyltransferase Clr4","termid":"PBO:0090775"}


id: PBO:0074494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptosome associated protein 23","termid":"PBO:0074494"}


id: GO:1902932
data:
  {"annotated_genes":["SJAG_03538","SJAG_04018","SJAG_02406"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105962],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070452"},{"annotations":[109795,85199],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090180"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of alcohol biosynthetic process.","definition_xrefs":["GOC:TermGenie","PMID:23332010","GOC:mengo_curators","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of alcohol biosynthetic process","termid":"GO:1902930"},{"relation_name":"positively_regulates","term_name":"alcohol biosynthetic process","termid":"GO:0046165"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02406":null,"SJAG_03538":null,"SJAG_04018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"positive regulation of alcohol biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of alcohol anabolism","type":"narrow"},{"name":"activation of alcohol biosynthesis","type":"narrow"},{"name":"activation of alcohol biosynthetic process","type":"narrow"},{"name":"activation of alcohol formation","type":"narrow"},{"name":"activation of alcohol synthesis","type":"narrow"},{"name":"positive regulation of alcohol anabolism","type":"exact"},{"name":"positive regulation of alcohol biosynthesis","type":"exact"},{"name":"positive regulation of alcohol formation","type":"exact"},{"name":"positive regulation of alcohol synthesis","type":"exact"},{"name":"positive regulation of solventogenesis","type":"broad"},{"name":"up regulation of alcohol anabolism","type":"exact"},{"name":"up regulation of alcohol biosynthesis","type":"exact"},{"name":"up regulation of alcohol biosynthetic process","type":"exact"},{"name":"up regulation of alcohol formation","type":"exact"},{"name":"up regulation of alcohol synthesis","type":"exact"},{"name":"up-regulation of alcohol anabolism","type":"exact"},{"name":"up-regulation of alcohol biosynthesis","type":"exact"},{"name":"up-regulation of alcohol biosynthetic process","type":"exact"},{"name":"up-regulation of alcohol formation","type":"exact"},{"name":"up-regulation of alcohol synthesis","type":"exact"},{"name":"upregulation of alcohol anabolism","type":"exact"},{"name":"upregulation of alcohol biosynthesis","type":"exact"},{"name":"upregulation of alcohol biosynthetic process","type":"exact"},{"name":"upregulation of alcohol formation","type":"exact"},{"name":"upregulation of alcohol synthesis","type":"exact"}],"termid":"GO:1902932","terms_by_termid":{"GO:0070452":null,"GO:0090180":null}}


id: PBO:0034470
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_cell_periphery","termid":"PBO:0034470"}


id: PBO:0055371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2800","termid":"PBO:0055371"}


id: _global:has_ontology_root_term
data:
  {"annotation_feature_type":"gene","cv_name":"external","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_ontology_root_term","secondary_identifiers":["IAO:0000700"],"termid":"_global:has_ontology_root_term"}


id: PBO:0066435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RE1 silencing transcription factor","termid":"PBO:0066435"}


id: PBO:0087619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Cop9 signalosome; Cop9 signalosome is required for deneddylation, or removal of the ubiquitin-like protein Rub1p from Cdc53p (cullin); involved in adaptation to pheromone signaling","termid":"PBO:0087619"}


id: PBO:0042828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrin 1","termid":"PBO:0042828"}


id: GO:0033385
data:
  {"annotated_genes":["SJAG_00580"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105594],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033386"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving geranylgeranyl diphosphate, a polyprenol compound involved in the biosynthesis of a variety of terpenoids including chlorophylls, carotenoids, tocopherols, plastoquinones, and the plant hormones gibberellins.","definition_xrefs":["GOC:mah","MetaCyc:PWY-5120"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid metabolic process","termid":"GO:0006644"},{"relation_name":"is_a","term_name":"terpenoid metabolic process","termid":"GO:0006721"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00580":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"geranylgeranyl diphosphate metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"geranylgeranyl diphosphate metabolism","type":"exact"},{"name":"geranylgeranyldiphosphate metabolic process","type":"exact"}],"termid":"GO:0033385","terms_by_termid":{"GO:0033386":null}}


id: PBO:0064820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP1R3B divergent transcript","termid":"PBO:0064820"}


id: PBO:0090118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GID complex subunit Gid4","termid":"PBO:0090118"}


id: FYPO:0003048
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a transcript, i.e. an RNA molecule synthesized on a DNA template by RNA polymerase, has an abnormal length.","definition_xrefs":["SO:0000673","PMID:22582262","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"},{"relation_name":"output_of","term_name":"transcription phenotype during vegetative growth","termid":"FYPO:0000290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0001985"],"is_obsolete":false,"name":"abnormal transcript length","termid":"FYPO:0003048"}


id: GO:0002097
data:
  {"annotated_genes":["SJAG_04452","SJAG_03677","SJAG_03896","SJAG_05023","SJAG_01302","SJAG_03616","SJAG_00186","SJAG_02099","SJAG_00579","SJAG_04175","SJAG_04756","SJAG_03932","SJAG_04704","SJAG_01024","SJAG_04189","SJAG_00358","SJAG_04367","SJAG_04113","SJAG_00235","SJAG_05249","SJAG_02302","SJAG_04380","SJAG_01418","SJAG_00352"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90395,113058],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990799"},{"annotations":[104584,88918],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070899"},{"annotations":[97229,100068,100354],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002100"},{"annotations":[96689,105602,91597,110088,106267,114846],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002926"},{"annotations":[84438,90055],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002127"},{"annotations":[92123,104519,113288,102986,101958],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002143"},{"annotations":[92189,114718,83968,101660],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002098"}]},"cv_name":"biological_process","definition":"The process in which the nucleotide at position 34 in the anticodon of a tRNA is post-transcriptionally modified.","definition_xrefs":["ISBN:155581073X","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA modification","termid":"GO:0006400"}],"gene_count":24,"genes_by_uniquename":{"SJAG_00186":null,"SJAG_00235":null,"SJAG_00352":null,"SJAG_00358":null,"SJAG_00579":null,"SJAG_01024":null,"SJAG_01302":null,"SJAG_01418":null,"SJAG_02099":null,"SJAG_02302":null,"SJAG_03616":null,"SJAG_03677":null,"SJAG_03896":null,"SJAG_03932":null,"SJAG_04113":null,"SJAG_04175":null,"SJAG_04189":null,"SJAG_04367":null,"SJAG_04380":null,"SJAG_04452":null,"SJAG_04704":null,"SJAG_04756":null,"SJAG_05023":null,"SJAG_05249":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006399"],"is_obsolete":false,"name":"tRNA wobble base modification","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0002097","terms_by_termid":{"GO:0002098":null,"GO:0002100":null,"GO:0002127":null,"GO:0002143":null,"GO:0002926":null,"GO:0070899":null,"GO:1990799":null}}


id: PBO:0111864
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C2 domain","termid":"PBO:0111864"}


id: MOD:01457
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to L-cysteine (not known as a natural, post-translational modification process).","definition_xrefs":["PubMed:18688235","PubMed:1849824"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-cysteine residue","termid":"MOD:00014"},{"relation_name":"is_a","term_name":"sulfur substitution for oxygen","termid":"MOD:00749"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-cysteine (Ser)","synonyms":[{"name":"Cys(Ser)","type":"exact"}],"termid":"MOD:01457"}


id: GO:0005304
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of L-valine from one side of a membrane to the other. L-valine is 2-amino-3-methylbutanoic acid.","definition_xrefs":["GOC:ai","GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"neutral L-amino acid transmembrane transporter activity","termid":"GO:0015175"},{"relation_name":"is_a","term_name":"L-amino acid transmembrane transporter activity","termid":"GO:0015179"},{"relation_name":"is_a","term_name":"branched-chain amino acid transmembrane transporter activity","termid":"GO:0015658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"L-valine transmembrane transporter activity","synonyms":[{"name":"L-valine transporter activity","type":"broad"},{"name":"isoleucine/valine:sodium symporter activity","type":"narrow"},{"name":"leucine/isoleucine/valine porter activity","type":"narrow"},{"name":"leucine/valine/isoleucine permease activity","type":"narrow"},{"name":"valine/tyrosine/tryptophan permease activity","type":"narrow"}],"termid":"GO:0005304"}


id: GO:0102659
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-alpha-D-glucose + 4-methylthiobutylhydroximate = H+ + 3-methylthiopropyl-desulfoglucosinolate + UDP.","definition_xrefs":["EC:2.4.1.195","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016757"],"is_obsolete":false,"name":"UDP-glucose: 4-methylthiobutylhydroximate S-glucosyltransferase activity","secondary_identifiers":["MetaCyc:RXN-2208"],"termid":"GO:0102659"}


id: PBO:0031749
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K9_methylation","termid":"PBO:0031749"}


id: GO:0044818
data:
  {"annotated_genes":["SJAG_02074","SJAG_01076","SJAG_03160","SJAG_01146","SJAG_03942","SJAG_03927","SJAG_00640","SJAG_02563","SJAG_03695","SJAG_02576","SJAG_01873","SJAG_02771","SJAG_02266","SJAG_01205","SJAG_01605","SJAG_00364","SJAG_01429","SJAG_04287","SJAG_04671","SJAG_01044","SJAG_02098","SJAG_05373","SJAG_01680","SJAG_03026","SJAG_01010"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112906,88648,95311,95477,99442,105428,90068,103945,96652,102723,90090,85279,113196,113365,108143,87560,112168],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033314"},{"annotations":[95478,96653,84719,87919,90070,97167,110368,113115,85280,113794,102724,86365,105429,107837,87561],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007095"}]},"cv_name":"biological_process","definition":"A cell cycle checkpoint that detects and negatively regulates progression from G2 to M phase as part of a mitotic cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic cell cycle checkpoint signaling","termid":"GO:0007093"},{"relation_name":"is_a","term_name":"negative regulation of G2/M transition of mitotic cell cycle","termid":"GO:0010972"}],"gene_count":25,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_00640":null,"SJAG_01010":null,"SJAG_01044":null,"SJAG_01076":null,"SJAG_01146":null,"SJAG_01205":null,"SJAG_01429":null,"SJAG_01605":null,"SJAG_01680":null,"SJAG_01873":null,"SJAG_02074":null,"SJAG_02098":null,"SJAG_02266":null,"SJAG_02563":null,"SJAG_02576":null,"SJAG_02771":null,"SJAG_03026":null,"SJAG_03160":null,"SJAG_03695":null,"SJAG_03927":null,"SJAG_03942":null,"SJAG_04287":null,"SJAG_04671":null,"SJAG_05373":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044772"},{"rel_name":"negatively_regulates","termid":"GO:0044772"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0044772","GO:0023052"],"is_obsolete":false,"name":"mitotic G2/M transition checkpoint","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0044818","terms_by_termid":{"GO:0007095":null,"GO:0033314":null}}


id: PBO:0040547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta 3-glucosyltransferase","termid":"PBO:0040547"}


id: PBO:0046250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ELOVL fatty acid elongase 6","termid":"PBO:0046250"}


id: PBO:0084411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"m(7)GpppX pyrophosphatase regulator; non-essential, stress induced regulatory protein; modulates m7G-oligoribonucleotide metabolism; inhibits Dcs1p; regulated by Msn2p, Msn4p, and the Ras-cAMP-cAPK signaling pathway; mutant has increased aneuploidy tolerance; DCS2 has a paralog, DCS1, that arose from the whole genome duplication","termid":"PBO:0084411"}


id: PBO:0073290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 14 pseudogene 12","termid":"PBO:0073290"}


id: GO:0106190
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the translocation of hydrons linked to a decarboxylation reaction.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete translocase activity acting on hydrons linked to a decarboxylation reaction (obsolete GO:0106190)","secondary_identifiers":["EC:7.1.4.-"],"termid":"GO:0106190"}


id: PBO:0078083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trafficking protein particle complex subunit 2L","termid":"PBO:0078083"}


id: PBO:0110041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NGRN pseudogene 4","termid":"PBO:0110041"}


id: GO:0102055
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-phosphonato-5'-adenylyl sulfate + a 12-hydroxyjasmonate = adenosine 3',5'-bismonophosphate + a 12-hydroxyjasmonate sulfate.","definition_xrefs":["RHEA:52728","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfotransferase activity","termid":"GO:0008146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016782"],"is_obsolete":false,"name":"12-hydroxyjasmonate sulfotransferase activity","secondary_identifiers":["EC:2.8.2.39","MetaCyc:RXN-10451"],"termid":"GO:0102055"}


id: PBO:0033760
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_duration_of_meiosis_I","termid":"PBO:0033760"}


id: FYPO:0002022
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, and structure of actin cortical patches are normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal actin cortical patch morphology","synonyms":[{"name":"normal F-actin patch morphology","type":"exact"},{"name":"normal actin cortical patch morphology during mitotic cell cycle","type":"related"},{"name":"normal actin cortical patch morphology during vegetative growth","type":"exact"},{"name":"normal actin patch morphology","type":"exact"}],"termid":"FYPO:0002022"}


id: PBO:0051067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy diversity 4/OR15-4A (non-functional)","termid":"PBO:0051067"}


id: SO:0001979
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A motif that affects the stability of RNA.","definition_xrefs":["PMID:22495308","SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA_motif","termid":"SO:0000715"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA_stability_element","synonyms":[{"name":"RNA stability element","type":"exact"}],"termid":"SO:0001979"}


id: GO:0031042
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form the core 6 O-glycan structure, GlcNAc-beta-(1->6)-GalNAc.","definition_xrefs":["GOC:mah","PMID:10580130","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycan processing","termid":"GO:0016266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006486"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006486","GO:0008150"],"is_obsolete":false,"name":"O-glycan processing, core 6","termid":"GO:0031042"}


id: PBO:0031069
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_small_spore","termid":"PBO:0031069"}


id: PR:Q9P382
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nup82 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P382"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin nup82 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC13A2.02","synonyms":[{"name":"Spom972h-nup82","type":"exact"},{"name":"nuclear pore protein nup82 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P382"}


id: PBO:0112591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"farnesyltranstransferase/ geranyltranstransferase Fps1","termid":"PBO:0112591"}


id: FYPO:0000715
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to K-252a. Cells stop growing (and may die) at a concentration of K-252a that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002683","FYPO:0005447","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to K-252a","synonyms":[{"name":"hypersensitive to K-252a","type":"exact"},{"name":"sensitive to K-252a during mitotic cell cycle","type":"related"},{"name":"sensitive to K-252a during vegetative growth","type":"exact"}],"termid":"FYPO:0000715"}


id: PBO:0053210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LGALS8 antisense RNA 1","termid":"PBO:0053210"}


id: GO:1903759
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any signal transduction that is involved in regulation of aerobic respiration.","definition_xrefs":["PMID:19266076","GO_REF:0000060","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete signal transduction involved in regulation of aerobic respiration (obsolete GO:1903759)","synonyms":[{"name":"signaling cascade involved in regulation of aerobic respiration","type":"narrow"},{"name":"signaling pathway involved in regulation of aerobic respiration","type":"related"},{"name":"signalling cascade involved in regulation of aerobic respiration","type":"narrow"},{"name":"signalling pathway involved in regulation of aerobic respiration","type":"related"}],"termid":"GO:1903759"}


id: GO:0009100
data:
  {"annotated_genes":["SJAG_01389","SJAG_00394","SJAG_04363","SJAG_04231","SJAG_02996","SJAG_04127","SJAG_03656","SJAG_03280","SJAG_01021","SJAG_04952","SJAG_04954","SJAG_02056","SJAG_00183","SJAG_04401","SJAG_00816","SJAG_03871","SJAG_01858","SJAG_04571","SJAG_03032","SJAG_00437","SJAG_04090","SJAG_04770","SJAG_03555","SJAG_03330","SJAG_01276","SJAG_04095","SJAG_05348","SJAG_03150","SJAG_01069","SJAG_03774","SJAG_00554","SJAG_00334","SJAG_03333","SJAG_01950","SJAG_03082","SJAG_02163","SJAG_03149","SJAG_04728","SJAG_01006","SJAG_03764","SJAG_04316","SJAG_01972","SJAG_03056","SJAG_02783","SJAG_02102","SJAG_00598","SJAG_03676","SJAG_00747","SJAG_04053","SJAG_01264","SJAG_03311","SJAG_04821","SJAG_05219","SJAG_01491","SJAG_01595","SJAG_00924","SJAG_02903","SJAG_03790","SJAG_03188","SJAG_00831","SJAG_03535","SJAG_04906","SJAG_02519","SJAG_02648"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89149,96880,94020,100200,101161,102059,101046,100617,114449,83675,105130],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000032"},{"annotations":[94526,96124,112845,94473,94805,107192,108664,105400,96107,90024,101099,102824,92554,99892,98418,86526,99692,87262],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006488"},{"annotations":[89670],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904380"},{"annotations":[83676],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009101"},{"annotations":[95899,89266,94896,98831,89268,109876,114122,83552,114591,94897,89267,94895,89269,94894],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006491"},{"annotations":[109877,112191,110072,104496,93914,104123,91843,113908,96144],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006486"},{"annotations":[94021,94901,94879,100618,83677,94887,106819,89273,94900,98905,96881,94898,97458,102060,96449,105402,106825,95044,108808,101162,114123,98832,96108,89272,95764,101047,94880,89271,95901,113405,89270,107016,94877,94899,114450,85362,94878,105131],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006487"},{"annotations":[97467,107193,112949,98685,91454,105403,109878],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0018279"},{"annotations":[96882,98833,100201,106826,89150,97655,94888,106820,100619,114124,101865],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006493"},{"annotations":[102061],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0035269"},{"annotations":[91844,89671],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097466"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving glycoproteins, a protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein metabolic process","termid":"GO:0019538"},{"relation_name":"is_a","term_name":"carbohydrate derivative metabolic process","termid":"GO:1901135"}],"gene_count":64,"genes_by_uniquename":{"SJAG_00183":null,"SJAG_00334":null,"SJAG_00394":null,"SJAG_00437":null,"SJAG_00554":null,"SJAG_00598":null,"SJAG_00747":null,"SJAG_00816":null,"SJAG_00831":null,"SJAG_00924":null,"SJAG_01006":null,"SJAG_01021":null,"SJAG_01069":null,"SJAG_01264":null,"SJAG_01276":null,"SJAG_01389":null,"SJAG_01491":null,"SJAG_01595":null,"SJAG_01858":null,"SJAG_01950":null,"SJAG_01972":null,"SJAG_02056":null,"SJAG_02102":null,"SJAG_02163":null,"SJAG_02519":null,"SJAG_02648":null,"SJAG_02783":null,"SJAG_02903":null,"SJAG_02996":null,"SJAG_03032":null,"SJAG_03056":null,"SJAG_03082":null,"SJAG_03149":null,"SJAG_03150":null,"SJAG_03188":null,"SJAG_03280":null,"SJAG_03311":null,"SJAG_03330":null,"SJAG_03333":null,"SJAG_03535":null,"SJAG_03555":null,"SJAG_03656":null,"SJAG_03676":null,"SJAG_03764":null,"SJAG_03774":null,"SJAG_03790":null,"SJAG_03871":null,"SJAG_04053":null,"SJAG_04090":null,"SJAG_04095":null,"SJAG_04127":null,"SJAG_04231":null,"SJAG_04316":null,"SJAG_04363":null,"SJAG_04401":null,"SJAG_04571":null,"SJAG_04728":null,"SJAG_04770":null,"SJAG_04821":null,"SJAG_04906":null,"SJAG_04952":null,"SJAG_04954":null,"SJAG_05219":null,"SJAG_05348":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glycoprotein metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"glycoprotein metabolism","type":"exact"}],"termid":"GO:0009100","terms_by_termid":{"GO:0000032":null,"GO:0006486":null,"GO:0006487":null,"GO:0006488":null,"GO:0006491":null,"GO:0006493":null,"GO:0009101":null,"GO:0018279":null,"GO:0035269":null,"GO:0097466":null,"GO:1904380":null}}


id: PBO:0078995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Thr (anticodon AGT) 2-2","termid":"PBO:0078995"}


id: PBO:0056926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myo-inositol oxygenase pseudogene 1","termid":"PBO:0056926"}


id: PBO:0091739
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytosolic TRNA thioUridylase","termid":"PBO:0091739"}


id: FYPO:0000570
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of mating projection assembly is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal shmoo formation","termid":"FYPO:0000568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000301"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000301","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased shmoo formation","synonyms":[{"name":"decreased conjugation tube formation","type":"exact"},{"name":"decreased mating projection assembly","type":"exact"},{"name":"decreased mating projection formation","type":"exact"},{"name":"decreased shmoo assembly","type":"exact"},{"name":"reduced shmoo formation","type":"exact"},{"name":"shmoo formation: decreased","type":"related"}],"termid":"FYPO:0000570"}


id: FYPO:0005154
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to heterochromatin at the mat2P silent mating-type cassette is decreased.","definition_xrefs":["PMID:18354497","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to heterochromatin at silent mating-type cassette","termid":"FYPO:0003573"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein localization to heterochromatin at mat2P silent mating-type cassette","synonyms":[{"name":"decreased protein localisation to heterochromatin at mat2P silent mating-type cassette","type":"exact"},{"name":"decreased protein localization to heterochromatin at mat2P mating-type region heterochromatin","type":"exact"},{"name":"decreased protein localization to heterochromatin at mat2P silent mating-type cassette during vegetative growth","type":"exact"},{"name":"decreased protein localization to heterochromatin at mat2P silent mating-type region","type":"exact"},{"name":"decreased protein localization to mat2P silent mating type cassette heterochromatin","type":"exact"},{"name":"decreased protein localization to mat2P silent mating-type cassette heterochromatin during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to mat2P silent mating-type cassette heterochromatin during vegetative growth","type":"exact"},{"name":"reduced protein localization to heterochromatin at mat2P silent mating-type cassette","type":"exact"}],"termid":"FYPO:0005154"}


id: PBO:0038934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alcohol dehydrogenase 1B (class I), beta polypeptide","termid":"PBO:0038934"}


id: PBO:0054928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2342","termid":"PBO:0054928"}


id: PBO:0058784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7153","termid":"PBO:0058784"}


id: GO:0030807
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of chemical reactions and pathways resulting in the breakdown of cyclic nucleotides.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cyclic nucleotide catabolic process (obsolete GO:0030807)","synonyms":[{"name":"activation of cyclic nucleotide catabolic process","type":"narrow"},{"name":"positive regulation of cyclic nucleotide breakdown","type":"exact"},{"name":"positive regulation of cyclic nucleotide catabolism","type":"exact"},{"name":"positive regulation of cyclic nucleotide degradation","type":"exact"},{"name":"stimulation of cyclic nucleotide catabolic process","type":"narrow"},{"name":"up regulation of cyclic nucleotide catabolic process","type":"exact"},{"name":"up-regulation of cyclic nucleotide catabolic process","type":"exact"},{"name":"upregulation of cyclic nucleotide catabolic process","type":"exact"}],"termid":"GO:0030807"}


id: GO:1905218
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an astaxanthin stimulus.","definition_xrefs":["GOC:TermGenie","PMID:22309505","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to lipid","termid":"GO:0071396"},{"relation_name":"is_a","term_name":"response to astaxanthin","termid":"GO:1905217"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to astaxanthin","synonyms":[{"name":"cellular response to (3S,3'S)-3,3'-dihydroxy-beta,beta-carotene-4,4'-dione","type":"exact"}],"termid":"GO:1905218"}


id: PBO:0075918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST13, Hsp70 interacting protein pseudogene 10","termid":"PBO:0075918"}


id: PBO:0005847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar RNA-binding protein NIFK (predicted)","termid":"PBO:0005847"}


id: GO:0102992
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + 2-methylbutyronitrile + NADPH + O2 = H2O + NADP + 2-hydroxy-2-methylbutyronitrile.","definition_xrefs":["GOC:pz","EC:1.14.13.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2-methylbutyronitrile hydroxylase activity","secondary_identifiers":["RHEA:51948","MetaCyc:RXN-9642"],"termid":"GO:0102992"}


id: GO:1903936
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sodium arsenite stimulus.","definition_xrefs":["PMID:18674524","GO_REF:0000071","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to arsenic-containing substance","termid":"GO:0071243"},{"relation_name":"is_a","term_name":"cellular response to salt","termid":"GO:1902075"},{"relation_name":"is_a","term_name":"response to sodium arsenite","termid":"GO:1903935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to sodium arsenite","termid":"GO:1903936"}


id: FYPO:0004458
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of one or more DNA replication RNAs measured in a cell is higher than normal (i.e. higher than observed in wild-type cells) when the cell is subject to nitrogen starvation. DNA replication RNAs are transcribed from genes whose products are involved in DNA replication.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during nitrogen starvation","termid":"FYPO:0002020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased level of DNA replication gene mRNA during nitrogen starvation","synonyms":[{"name":"increased DNA replication gene mRNA accumulation during nitrogen starvation","type":"related"},{"name":"increased level of DNA replication gene RNA during nitrogen starvation","type":"exact"},{"name":"increased level of DNA replication gene mRNA during nitrogen depletion","type":"exact"},{"name":"increased level of DNA replication gene mRNA during nitrogen deprivation","type":"exact"},{"name":"increased level of DNA replication gene transcripts nitrogen starvation","type":"exact"}],"termid":"FYPO:0004458"}


id: PBO:0003110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Brx1 (predicted)","termid":"PBO:0003110"}


id: GO:0033554
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id: PBO:0079561
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id: PR:O13818
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id: PBO:0028311
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id: PBO:0016951
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id: GO:0010457
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id: PBO:0077103
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id: PBO:0043641
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id: GO:0047546
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id: SO:0000716
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id: FYPO:0002865
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id: PBO:0051822
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id: GO:0033572
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id: PBO:0079029
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id: PBO:0063378
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id: GO:1900900
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of heptadecane metabolic process.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular metabolic process","termid":"GO:0031324"},{"relation_name":"is_a","term_name":"regulation of heptadecane metabolic process","termid":"GO:1900899"},{"relation_name":"negatively_regulates","term_name":"heptadecane metabolic process","termid":"GO:1900635"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of heptadecane metabolic process","synonyms":[{"name":"down regulation of heptadecane metabolic process","type":"exact"},{"name":"down regulation of heptadecane metabolism","type":"related"},{"name":"down-regulation of heptadecane metabolic process","type":"exact"},{"name":"down-regulation of heptadecane metabolism","type":"related"},{"name":"downregulation of heptadecane metabolic process","type":"exact"},{"name":"downregulation of heptadecane metabolism","type":"related"},{"name":"inhibition of heptadecane metabolic process","type":"narrow"},{"name":"inhibition of heptadecane metabolism","type":"narrow"},{"name":"negative regulation of heptadecane metabolism","type":"related"}],"termid":"GO:1900900"}


id: PBO:0016927
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae NSR1","termid":"PBO:0016927"}


id: GO:0015685
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which ferric-enterobactin, the iron-bound form of the siderophore enterobactin, is transported into the cell by specific cell surface receptors.","definition_xrefs":["PMID:23192658","GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"},{"relation_name":"is_a","term_name":"siderophore-dependent iron import into cell","termid":"GO:0033214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098771"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0098771","GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"ferric-enterobactin import into cell","synonyms":[{"name":"ferric-enterobactin transport","type":"broad"}],"termid":"GO:0015685"}


id: GO:0002622
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of B cell antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation","termid":"GO:0002577"},{"relation_name":"is_a","term_name":"regulation of B cell mediated immunity","termid":"GO:0002712"},{"relation_name":"regulates","term_name":"B cell antigen processing and presentation","termid":"GO:0002450"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of B cell antigen processing and presentation","synonyms":[{"name":"regulation of B lymphocyte antigen processing and presentation","type":"exact"},{"name":"regulation of B-cell antigen processing and presentation","type":"exact"},{"name":"regulation of B-lymphocyte antigen processing and presentation","type":"exact"}],"termid":"GO:0002622"}


id: GO:0046705
data:
  {"annotated_genes":["SJAG_00779"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111674],"is_not":false,"summary":null,"term":"GO:0046705"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of CDP, cytidine (5'-)diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine ribonucleoside diphosphate biosynthetic process","termid":"GO:0009194"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleotide biosynthetic process","termid":"GO:0009220"},{"relation_name":"is_a","term_name":"CDP metabolic process","termid":"GO:0046704"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00779":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"CDP biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"CDP anabolism","type":"exact"},{"name":"CDP biosynthesis","type":"exact"},{"name":"CDP formation","type":"exact"},{"name":"CDP synthesis","type":"exact"}],"termid":"GO:0046705","terms_by_termid":{"GO:0046705":null}}


id: PR:O13750
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01475","PANTHER:PTHR11117:SF3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC16E8.17c","secondary_identifiers":["UniProtKB:O13750"],"synonyms":[{"name":"SCS-alpha (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SUCLG1","type":"exact"},{"name":"succinyl-CoA synthetase subunit alpha (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13750"}


id: PBO:0053552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 559","termid":"PBO:0053552"}


id: GO:0000150
data:
  {"annotated_genes":["SJAG_00757","SJAG_01410","SJAG_04530","SJAG_02267"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[88797,95195,95196,96670,98315],"is_not":false,"summary":null,"term":"GO:0000150"}]},"cv_name":"molecular_function","definition":"Catalysis of the identification and base-pairing of homologous sequences between single-stranded DNA and double-stranded DNA.","definition_xrefs":["GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic activity, acting on DNA","termid":"GO:0140097"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00757":null,"SJAG_01410":null,"SJAG_02267":null,"SJAG_04530":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140097","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"DNA strand exchange activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-912458"],"synonyms":[{"name":"RecA-family recombinase activity","type":"related"},{"name":"recombinase activity","type":"exact"},{"name":"strand exchange activity","type":"related"},{"name":"strand transferase","type":"narrow"}],"termid":"GO:0000150","terms_by_termid":{"GO:0000150":null}}


id: PBO:0074988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 114-30","termid":"PBO:0074988"}


id: PBO:0057400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548h-2","termid":"PBO:0057400"}


id: PBO:0088962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome small subunit biogenesis protein, BUD22 family","termid":"PBO:0088962"}


id: PBO:0029483
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_microcolony,_swollen_curved_cells_(obsolete_FYPO:0002232)","termid":"PBO:0029483"}


id: PBO:0005636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylserine synthase Pps1","termid":"PBO:0005636"}


id: GO:0018543
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 4-amino-2-hydroxylamino-6-nitrotoluene + NADP+ = NADPH + H+ + 4-amino-2-nitroso-6-nitrotoluene.","definition_xrefs":["UM-BBD_reactionID:r0464"],"gene_count":0,"genotype_count":0,"name":"obsolete 4-amino-2-nitroso-6-nitrotoluene reductase activity (obsolete GO:0018543)","termid":"GO:0018543"}


id: PBO:0000816
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.8.1","termid":"PBO:0000816"}


id: GO:0061067
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of dauer larval development, the process whose specific outcome is the progression of the dauer larva over time, through the facultative diapause of the dauer (enduring) larval stage, with specialized traits adapted for dispersal and long-term survival, with elevated stress resistance and without feeding.","definition_xrefs":["GOC:dph","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of nematode larval development","termid":"GO:0061064"},{"relation_name":"is_a","term_name":"regulation of dauer larval development","termid":"GO:0061065"},{"relation_name":"negatively_regulates","term_name":"dauer larval development","termid":"GO:0040024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of dauer larval development","termid":"GO:0061067"}


id: GO:0046234
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of fluorene, a tricyclic polycyclic aromatic hydrocarbon containing a five-membered ring. It is a major component of fossil fuels and their derivatives and is also a by-product of coal-conversion and energy-related industries. It is commonly found in vehicle exhaust emissions, crude oils, motor oils, coal and oil combustion products, waste incineration, and industrial effluents.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete fluorene biosynthetic process (obsolete GO:0046234)","synonyms":[{"name":"fluorene anabolism","type":"exact"},{"name":"fluorene biosynthesis","type":"exact"},{"name":"fluorene biosynthetic process","type":"exact"},{"name":"fluorene formation","type":"exact"},{"name":"fluorene synthesis","type":"exact"}],"termid":"GO:0046234"}


id: FYPO:0008063
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the intracellular calcium ion (Ca2+) concentration briefly increases abnormally, or does not change, immediately following osmotic shock. Normally, the intracellular Ca2+ concentration increases to a peak in a \\\"burst\\\" within one minute, and then decreases to a new steady-state concentration.","definition_xrefs":["PMID:36200871"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered cellular calcium level","termid":"FYPO:0001462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased immediate intracellular calcium spike following osmotic shock","termid":"FYPO:0008063"}


id: FYPO:0004325
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to 5-fluorouracil. Cells stop growing (and may die) at a concentration of 5-fluorouracil that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0000003","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to 5-fluorouracil","synonyms":[{"name":"hypersensitive to 5-fluorouracil","type":"exact"},{"name":"sensitive to 5-FU","type":"exact"},{"name":"sensitive to 5-fluorouracil during mitotic cell cycle","type":"related"},{"name":"sensitive to 5-fluorouracil during vegetative growth","type":"exact"}],"termid":"FYPO:0004325"}


id: PBO:0002882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A) polymerase Cid1","termid":"PBO:0002882"}


id: PBO:0058858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 8087","termid":"PBO:0058858"}


id: MOD:00746
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a tungsten atom or a cluster containing tungsten for hydrogen atoms, or that coordinates a tungsten ion.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal or metal cluster containing modified residue","termid":"MOD:00698"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tungsten containing modified residue","synonyms":[{"name":"WRes","type":"exact"}],"termid":"MOD:00746"}


id: PBO:0058468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5197","termid":"PBO:0058468"}


id: PBO:0073220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEMA6A antisense RNA 2","termid":"PBO:0073220"}


id: GO:0004117
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: 3',5'-cyclic AMP + H2O = AMP + H+ and 3',5'-cyclic GMP + H2O = GMP + H+; this activity is activated by binding to calcium-bound calmodulin.","definition_xrefs":["PMID:8557689","PMID:9419816"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3',5'-cyclic-AMP phosphodiesterase activity","termid":"GO:0004115"},{"relation_name":"is_a","term_name":"3',5'-cyclic-GMP phosphodiesterase activity","termid":"GO:0047555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787","GO:0016788"],"is_obsolete":false,"name":"calmodulin-activated dual specificity 3',5'-cyclic-GMP, 3',5'-cyclic-AMP phosphodiesterase activity","secondary_identifiers":["Reactome:R-HSA-111955"],"synonyms":[{"name":"calmodulin-activated cyclic-nucleotide dual specificity phosphodiesterase activity","type":"related"},{"name":"calmodulin-dependent cyclic-nucleotide phosphodiesterase activity","type":"broad"}],"termid":"GO:0004117"}


id: GO:1900137
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of chemokine activity.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell migration","termid":"GO:0030336"},{"relation_name":"is_a","term_name":"negative regulation of chemotaxis","termid":"GO:0050922"},{"relation_name":"is_a","term_name":"negative regulation of cytokine activity","termid":"GO:0060302"},{"relation_name":"is_a","term_name":"regulation of chemokine activity","termid":"GO:1900136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of chemokine activity","synonyms":[{"name":"down regulation of chemokine activity","type":"exact"},{"name":"down-regulation of chemokine activity","type":"exact"},{"name":"downregulation of chemokine activity","type":"exact"},{"name":"inhibition of chemokine activity","type":"narrow"}],"termid":"GO:1900137"}


id: PBO:0089044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diphthamide biosynthesis protein Dph3","termid":"PBO:0089044"}


id: PBO:0068233
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 18S ribosomal 4","termid":"PBO:0068233"}


id: PATO:0002367
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Male quality of being incapable to reproduce because of functional loss of the testicles from surgical removal or chemical means.","definition_xrefs":["PATOC:MF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"male","termid":"PATO:0000384"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"castrated male","termid":"PATO:0002367"}


id: GO:0052871
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (+)-alpha-tocopherol + O2 + reduced [NADPH--hemoprotein reductase] = 13-hydroxy-alpha-tocopherol + H+ + H2O + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["RHEA:45108"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"alpha-tocopherol omega-hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-11003"],"synonyms":[{"name":"alpha-tocopherol 13-hydroxylase activity","type":"exact"}],"termid":"GO:0052871"}


id: PBO:0043556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type IV alpha 5 chain","termid":"PBO:0043556"}


id: GO:0007146
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"During meiosis, the aggregation, arrangement and bonding together of strand exchange proteins (recombinases) to form small, electron dense structures in association with meiotic chromosomes.","definition_xrefs":["GOC:jl","PMID:9334324"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic DNA recombinase assembly","termid":"GO:0000707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0006281"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0007049","GO:0006281","GO:0044085","GO:0006310","GO:0006259"],"is_obsolete":false,"name":"meiotic recombination nodule assembly","termid":"GO:0007146"}


id: PBO:0029612
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_tapered_cell","termid":"PBO:0029612"}


id: PBO:0001946
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.1.1.42","termid":"PBO:0001946"}


id: GO:0018379
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The linkage of cytochromes and other heme proteins to heme via heme-bis-L-cysteine.","definition_xrefs":["RESID:AA0134"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytochrome c-heme linkage","termid":"GO:0018063"},{"relation_name":"is_a","term_name":"peptidyl-cysteine modification","termid":"GO:0018198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"cytochrome c-heme linkage via heme-bis-L-cysteine","synonyms":[{"name":"cytochrome c-haem linkage via haem-bis-L-cysteine","type":"exact"}],"termid":"GO:0018379"}


id: GO:0045183
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A translation regulator activity that does not involve binding to nucleic acids.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translation regulator activity","termid":"GO:0045182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0045182"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0045182","GO:0003674"],"is_obsolete":false,"name":"translation factor activity, non-nucleic acid binding","termid":"GO:0045183"}


id: PR:O59731
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC3E7.11c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59731"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized J domain-containing protein C3E7.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3E7.11c","synonyms":[{"name":"Spom972h-SPBC3E7.11c","type":"exact"}],"termid":"PR:O59731"}


id: GO:0019247
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Partial conversion of one lactate enantiomer into another so that the specific optical rotation is decreased, or even reduced to zero, in the resulting mixture.","definition_xrefs":["GOC:curators","PMID:16166538"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lactate metabolic process","termid":"GO:0006089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"lactate racemization","termid":"GO:0019247"}


id: GO:0008141
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A glue which attaches the pupae to the substrate during metamorphosis, as in, but not restricted to, the true flies (Diptera, ncbi_taxonomy_id:7147).","definition_xrefs":["PMID:825230"],"gene_count":0,"genotype_count":0,"name":"obsolete puparial glue (sensu Diptera) (obsolete GO:0008141)","synonyms":[{"name":"puparial glue (sensu Diptera)","type":"exact"}],"termid":"GO:0008141"}


id: PBO:0087395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S/T protein kinase; required for PM lipid and protein homeostasis; involved in sphingolipid-mediated and cell integrity signaling pathways and endocytosis; phosphorylates and downregulates Fpk1p; phosphorylates and inactivates Orm1p/2p when sphingolipid synthesis is compromised; role in TORC1/2-dependent Rps6a/b phosphorylation; phosphorylated and activated by TORC2 and by Pkh1/2p in the presence of phytosphingosine; human homolog SGK1 complements the null and inviability of a ypk1 ypk2 mutant","termid":"PBO:0087395"}


id: GO:0047352
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5'-adenylyl sulfate + NH4 = adenosine 5'-phosphoramidate + 2 H+ + sulfate.","definition_xrefs":["EC:2.7.7.51","RHEA:19197"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylyltransferase activity","termid":"GO:0070566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016779"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016779","GO:0003824"],"is_obsolete":false,"name":"adenylylsulfate-ammonia adenylyltransferase activity","secondary_identifiers":["KEGG_REACTION:R01619","MetaCyc:2.7.7.51-RXN"],"synonyms":[{"name":"APSAT","type":"related"},{"name":"adenylylsulfate:ammonia adenylyltransferase activity","type":"related"},{"name":"adenylylsulphate-ammonia adenylyltransferase activity","type":"exact"}],"termid":"GO:0047352"}


id: FYPO:0002238
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing cerulenin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0002058","FYPO:0000139","FYPO:0002060","FYPO:0000257"],"is_obsolete":false,"name":"normal growth on cerulenin","synonyms":[{"name":"normal cell population growth in presence of cerulenin","type":"exact"},{"name":"normal cell population growth on cerulenin","type":"exact"},{"name":"normal cellular response to cerulenin","type":"related"},{"name":"normal vegetative cell population growth on cerulenin","type":"exact"}],"termid":"FYPO:0002238"}


id: FYPO:0003260
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of splicing of RNA primary transcripts at sites that are not normally frequently used is decreased.","definition_xrefs":["PomBase:mah","PMID:24210919"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA splicing","termid":"FYPO:0003040"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000294","FYPO:0000002","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"decreased RNA splicing at cryptic splice sites","synonyms":[{"name":"decreased RNA splicing at cryptic splice sites during mitotic cell cycle","type":"related"},{"name":"decreased RNA splicing at cryptic splice sites during vegetative growth","type":"exact"},{"name":"decreased RNA splicing of cryptic introns","type":"exact"},{"name":"reduced RNA splicing at cryptic splice sites","type":"exact"}],"termid":"FYPO:0003260"}


id: PBO:0054443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1840","termid":"PBO:0054443"}


id: GO:0005868
data:
  {"annotated_genes":["SJAG_02561","SJAG_02286","SJAG_00113","SJAG_01662","SJAG_01370"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[83926,87126,93704,96838,107505],"is_not":false,"summary":null,"term":"GO:0005868"}]},"cv_name":"cellular_component","definition":"Any dynein complex with a homodimeric dynein heavy chain core that catalyzes movement along a microtubule. Cytoplasmic dynein complexes participate in many cytoplasmic transport activities in eukaryotes, such as mRNA localization, intermediate filament transport, nuclear envelope breakdown, apoptosis, transport of centrosomal proteins, mitotic spindle assembly, virus transport, kinetochore functions, and movement of signaling and spindle checkpoint proteins. Some complexes participate in intraflagellar transport. Subunits associated with the dynein heavy chain mediate association between dynein heavy chain and cargoes, and may include light chains and light intermediate chains.","definition_xrefs":["GOC:krc","GOC:hla","GOC:cilia","GOC:mah","PMID:12600311"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dynein complex","termid":"GO:0030286"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00113":null,"SJAG_01370":null,"SJAG_01662":null,"SJAG_02286":null,"SJAG_02561":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0015630"],"is_obsolete":false,"name":"cytoplasmic dynein complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cytoplasmic dynein heavy chain","type":"narrow"},{"name":"cytoplasmic dynein intermediate chain","type":"narrow"},{"name":"cytoplasmic dynein intermediate light chain","type":"narrow"},{"name":"cytoplasmic dynein light chain","type":"narrow"}],"termid":"GO:0005868","terms_by_termid":{"GO:0005868":null}}


id: PBO:0078608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 62","termid":"PBO:0078608"}


id: GO:0030315
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane.","definition_xrefs":["GOC:mtg_muscle","ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"sarcolemma","termid":"GO:0042383"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"T-tubule","secondary_identifiers":["Wikipedia:T-tubule"],"synonyms":[{"name":"transverse tubule","type":"exact"},{"name":"triad","type":"related"}],"termid":"GO:0030315"}


id: GO:1900525
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of phosphatidylserine biosynthetic process by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:dgf","PMID:8056324","GOC:TermGenie","PMID:8614637"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of phosphatidylserine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (obsolete GO:1900525)","synonyms":[{"name":"activation of phosphatidylserine anabolism by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"activation of phosphatidylserine biosynthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"activation of phosphatidylserine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter","type":"narrow"},{"name":"activation of phosphatidylserine formation by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"activation of phosphatidylserine synthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of phosphatidylserine anabolism by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of phosphatidylserine biosynthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of phosphatidylserine formation by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of phosphatidylserine synthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up regulation of phosphatidylserine anabolism by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up regulation of phosphatidylserine biosynthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up regulation of phosphatidylserine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up regulation of phosphatidylserine formation by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up regulation of phosphatidylserine synthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up-regulation of phosphatidylserine anabolism by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up-regulation of phosphatidylserine biosynthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up-regulation of phosphatidylserine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up-regulation of phosphatidylserine formation by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up-regulation of phosphatidylserine synthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"upregulation of phosphatidylserine anabolism by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"upregulation of phosphatidylserine biosynthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"upregulation of phosphatidylserine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"upregulation of phosphatidylserine formation by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"upregulation of phosphatidylserine synthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:1900525"}


id: PBO:0077457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 183B, pseudogene","termid":"PBO:0077457"}


id: GO:0003247
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The growth of a cardiac muscle cell during the postembryonic period that contributes to the shaping of the heart.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth involved in heart morphogenesis","termid":"GO:0003241"},{"relation_name":"is_a","term_name":"developmental cell growth","termid":"GO:0048588"},{"relation_name":"part_of","term_name":"cardiac muscle tissue growth involved in heart morphogenesis","termid":"GO:0003245"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"post-embryonic cardiac muscle cell growth involved in heart morphogenesis","termid":"GO:0003247"}


id: GO:0140365
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ribonucleoprotein granule located in the cytoplasm of bacteria, minimally containing the RNase E protein and RNA molecules. Bacterial RNP-bodies are similar to eukaryotic P-bodies and stress granules.","definition_xrefs":["PMID:30197298"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic ribonucleoprotein granule","termid":"GO:0036464"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"RNP body","synonyms":[{"name":"BR-body","type":"exact"}],"termid":"GO:0140365"}


id: PBO:0067456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 581, pseudogene","termid":"PBO:0067456"}


id: GO:0004048
data:
  {"annotated_genes":["SJAG_03167"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100499],"is_not":false,"summary":null,"term":"GO:0004048"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: N-(5-phospho-beta-D-ribosyl)anthranilate + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + anthranilate.","definition_xrefs":["RHEA:11768","EC:2.4.2.18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03167":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016757","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"anthranilate phosphoribosyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PRTRANS-RXN","KEGG_REACTION:R01073"],"synonyms":[{"name":"N-(5-phospho-D-ribosyl)-anthranilate:diphosphate phospho-alpha-D-ribosyltransferase activity","type":"related"},{"name":"PRT","type":"related"},{"name":"anthranilate 5-phosphoribosylpyrophosphate phosphoribosyltransferase activity","type":"related"},{"name":"anthranilate phosphoribosylpyrophosphate phosphoribosyltransferase activity","type":"related"},{"name":"anthranilate-PP-ribose-P phosphoribosyltransferase activity","type":"related"},{"name":"phosphoribosyl-anthranilate diphosphorylase activity","type":"related"},{"name":"phosphoribosyl-anthranilate pyrophosphorylase activity","type":"related"},{"name":"phosphoribosylanthranilate pyrophosphorylase activity","type":"related"},{"name":"phosphoribosylanthranilate transferase activity","type":"related"}],"termid":"GO:0004048","terms_by_termid":{"GO:0004048":null}}


id: GO:0018789
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cyclohexylsulfamate + H2O = cyclohexylamine + sulfate.","definition_xrefs":["RHEA:18481","EC:3.10.1.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid sulfur-nitrogen bonds","termid":"GO:0016826"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"cyclamate sulfohydrolase activity","secondary_identifiers":["KEGG_REACTION:R02564","MetaCyc:CYCLAMATE-SULFOHYDROLASE-RXN","UM-BBD_reactionID:r0755"],"synonyms":[{"name":"cyclamate sulfamatase activity","type":"exact"},{"name":"cyclamate sulfamidase activity","type":"related"},{"name":"cyclamate sulphohydrolase activity","type":"exact"},{"name":"cyclohexylsulfamate sulfamidase activity","type":"related"},{"name":"cyclohexylsulfamate sulfohydrolase activity","type":"related"}],"termid":"GO:0018789"}


id: PR:O13793
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC17G6.15c gene.","definition_xrefs":["UniProtKB:O13793","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial transport protein fsf1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17G6.15c","synonyms":[{"name":"Spom972h-SPAC17G6.15c","type":"exact"},{"name":"fungal sideroflexin-1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13793"}


id: PBO:0108574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo Sfi1 Interactor","termid":"PBO:0108574"}


id: PBO:0084243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Inner nuclear membrane (INM) protein; contains helix-extension-helix (HEH) motif, nuclear localization signal sequence; targeting to the INM requires the Srp1p-Kap95p karyopherins and the Ran cycle; HEH2 has a paralog, SRC1, that arose from the whole genome duplication","termid":"PBO:0084243"}


id: PBO:0078398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Phe (anticodon GAA) 8-1","termid":"PBO:0078398"}


id: PBO:0045722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E2F5 divergent transcript","termid":"PBO:0045722"}


id: PBO:0053463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 424","termid":"PBO:0053463"}


id: PBO:0000329
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Minichromosome InStability","termid":"PBO:0000329"}


id: GO:0102725
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + 24-methyldesmosterol + NADPH = campesterol + NADP.","definition_xrefs":["EC:1.3.-.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors","termid":"GO:0016627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"24-methyldesmosterol reductase activity","secondary_identifiers":["MetaCyc:RXN-708"],"termid":"GO:0102725"}


id: GO:0071734
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + biotin + apo-(pyruvate-carboxylase) = AMP + diphosphate + biotin-(pyruvate-carboxylase).","definition_xrefs":["PMID:10551847","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biotin-protein ligase activity","termid":"GO:0018271"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140096","GO:0016874","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"biotin-[pyruvate-carboxylase] ligase activity","secondary_identifiers":["EC:6.3.4.-"],"synonyms":[{"name":"biotin-[pyruvate carboxylase] ligase activity","type":"exact"},{"name":"biotin-[pyruvate carboxylase] synthetase activity","type":"exact"},{"name":"biotin-pyruvate carboxylase synthetase activity","type":"exact"},{"name":"biotin-pyruvate-carboxylase ligase activity","type":"exact"},{"name":"biotin:apo-pyruvate-carboxylase ligase","type":"exact"}],"termid":"GO:0071734"}


id: PBO:0049678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HADHA pseudogene 2","termid":"PBO:0049678"}


id: PBO:0083811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential RNA-binding component of cleavage and polyadenylation factor; contains five zinc fingers; required for pre-mRNA 3'-end processing and polyadenylation; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0083811"}


id: GO:0060341
data:
  {"annotated_genes":["SJAG_03376","SJAG_01805","SJAG_02592","SJAG_03048","SJAG_03591","SJAG_04343","SJAG_00883","SJAG_04468","SJAG_01716","SJAG_04312","SJAG_01825","SJAG_03602","SJAG_00823","SJAG_05978","SJAG_03453","SJAG_04509","SJAG_01084","SJAG_00906","SJAG_04597","SJAG_02074","SJAG_00030","SJAG_01373","SJAG_01311","SJAG_01245","SJAG_02645","SJAG_03970","SJAG_04464","SJAG_01166","SJAG_02392"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84262],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042997"},{"annotations":[111436,102454,102359,87866],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905412"},{"annotations":[101911],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042308"},{"annotations":[91983,87104],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903067"},{"annotations":[90539],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140325"},{"annotations":[103340],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902543"},{"annotations":[110576],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1900181"},{"annotations":[91984],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903077"},{"annotations":[103516],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905406"},{"annotations":[90544],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902854"},{"annotations":[104842],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070863"},{"annotations":[89934,107120,97968,96560],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046827"},{"annotations":[98506,86993,90502],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042307"},{"annotations":[94564],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120047"},{"annotations":[100754],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903078"},{"annotations":[84071],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001135"},{"annotations":[107755],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060628"},{"annotations":[88144,84075],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033157"},{"annotations":[104063],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905391"},{"annotations":[99445],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905634"},{"annotations":[102483,97060],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902542"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of a process in which a cell, a substance, or a cellular entity is transported to, or maintained in a specific location within or in the membrane of a cell.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of localization","termid":"GO:0032879"},{"relation_name":"is_a","term_name":"regulation of cellular process","termid":"GO:0050794"},{"relation_name":"regulates","term_name":"cellular localization","termid":"GO:0051641"}],"gene_count":29,"genes_by_uniquename":{"SJAG_00030":null,"SJAG_00823":null,"SJAG_00883":null,"SJAG_00906":null,"SJAG_01084":null,"SJAG_01166":null,"SJAG_01245":null,"SJAG_01311":null,"SJAG_01373":null,"SJAG_01716":null,"SJAG_01805":null,"SJAG_01825":null,"SJAG_02074":null,"SJAG_02392":null,"SJAG_02592":null,"SJAG_02645":null,"SJAG_03048":null,"SJAG_03376":null,"SJAG_03453":null,"SJAG_03591":null,"SJAG_03602":null,"SJAG_03970":null,"SJAG_04312":null,"SJAG_04343":null,"SJAG_04464":null,"SJAG_04468":null,"SJAG_04509":null,"SJAG_04597":null,"SJAG_05978":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular localization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of cellular localisation","type":"exact"}],"termid":"GO:0060341","terms_by_termid":{"GO:0033157":null,"GO:0042307":null,"GO:0042308":null,"GO:0042997":null,"GO:0046827":null,"GO:0060628":null,"GO:0070863":null,"GO:0120047":null,"GO:0140325":null,"GO:1900181":null,"GO:1902542":null,"GO:1902543":null,"GO:1902854":null,"GO:1903067":null,"GO:1903077":null,"GO:1903078":null,"GO:1905391":null,"GO:1905406":null,"GO:1905412":null,"GO:1905634":null,"GO:2001135":null}}


id: PBO:0004204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione peroxidase Gpx1","termid":"PBO:0004204"}


id: GO:0097142
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric protein complex consisting of PUMA and BCL-2, members of the Bcl-2 family of anti- and proapoptotic regulators.","definition_xrefs":["GOC:so","PMID:14634621"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Bcl-2 family protein complex","termid":"GO:0097136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"PUMA-BCL-2 complex","termid":"GO:0097142"}


id: GO:0001507
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of acetylcholine that occurs in the synaptic cleft during synaptic transmission.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylcholine catabolic process","termid":"GO:0006581"},{"relation_name":"part_of","term_name":"synaptic transmission, cholinergic","termid":"GO:0007271"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"acetylcholine catabolic process in synaptic cleft","synonyms":[{"name":"acetylcholine breakdown in synaptic cleft","type":"exact"},{"name":"acetylcholine degradation in synaptic cleft","type":"exact"}],"termid":"GO:0001507"}


id: FYPO:0007844
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the monomethylation of lysine at position 9 of histone H3 in centromere inner repeat regions occurs to a greater extent than normal.","definition_xrefs":["PMID:17363370","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K9 methylation at centromere during vegetative growth","termid":"FYPO:0005066"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0002494","FYPO:0001320","FYPO:0002274"],"is_obsolete":false,"name":"increased histone H3-K9 monomethylation at centromere during vegetative growth","synonyms":[{"name":"increased centromeric histone H3-K9 monomethylation during vegetative growth","type":"exact"},{"name":"increased histone H3 K9 monomethylation at centromere during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 monomethylation at centromere during mitotic cell cycle","type":"related"},{"name":"increased histone H3K9 monomethylation at centromere during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 monomethylation at centromere during vegetative growth","type":"exact"}],"termid":"FYPO:0007844"}


id: PBO:0042722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromere protein B","termid":"PBO:0042722"}


id: PBO:0036047
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K14_acetylation_at_centromere_outer_repeat_during_vegetative_growth","termid":"PBO:0036047"}


id: PBO:0085930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; mitochondrial protein that physically interacts with Tim23p; null mutant displays reduced respiratory growth","termid":"PBO:0085930"}


id: PBO:0063436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDE4DIP pseudogene 10","termid":"PBO:0063436"}


id: PBO:0051494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin superfamily member 11","termid":"PBO:0051494"}


id: PBO:0068035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 340","termid":"PBO:0068035"}


id: GO:0046069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of cyclic GMP, guanosine 3',5'-phosphate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide catabolic process","termid":"GO:0009154"},{"relation_name":"is_a","term_name":"cyclic nucleotide catabolic process","termid":"GO:0009214"},{"relation_name":"is_a","term_name":"cGMP metabolic process","termid":"GO:0046068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"cGMP catabolic process","synonyms":[{"name":"cGMP breakdown","type":"exact"},{"name":"cGMP catabolism","type":"exact"},{"name":"cGMP degradation","type":"exact"}],"termid":"GO:0046069"}


id: PBO:0066318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding protein with multiple splicing-like pseudogene","termid":"PBO:0066318"}


id: PBO:0085865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; has similarity to Pmp3p, which is involved in cation transport; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern","termid":"PBO:0085865"}


id: PBO:0017696
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peptide Trna Hydrolase","termid":"PBO:0017696"}


id: SO:0000078
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transcript that is polycistronic.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"polycistronic","termid":"SO:0000880"},{"relation_name":"is_a","term_name":"transcript","termid":"SO:0000673"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polycistronic_transcript","synonyms":[{"name":"polycistronic transcript","type":"exact"}],"termid":"SO:0000078"}


id: GO:0007342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The binding and fusion of a sperm, with the plasma membrane of the oocyte as part of the process of single fertilization. In sperm with flagella, binding occurs at the posterior (post-acrosomal) region of the sperm head.","definition_xrefs":["GOC:jl","GOC:dph","PMID:17644969"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process involved in reproduction in multicellular organism","termid":"GO:0022412"},{"relation_name":"is_a","term_name":"plasma membrane fusion","termid":"GO:0045026"},{"relation_name":"part_of","term_name":"single fertilization","termid":"GO:0007338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"fusion of sperm to egg plasma membrane involved in single fertilization","synonyms":[{"name":"sperm-oocyte fusion","type":"narrow"}],"termid":"GO:0007342"}


id: PR:O74548
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- arg1 gene.","definition_xrefs":["UniProtKB:O74548","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetylornithine aminotransferase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC777.09c","synonyms":[{"name":"ACOAT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-arg1","type":"exact"}],"termid":"PR:O74548"}


id: PBO:0075824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal sequence receptor subunit 1","termid":"PBO:0075824"}


id: PBO:0083033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Delta 1-pyrroline-5-carboxylate reductase; catalyzes the last step in proline biosynthesis","termid":"PBO:0083033"}


id: GO:0140923
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a magnetosome. Magnetosomes are specialized organelles for magnetic navigation that comprise membrane-enveloped, nano-sized crystals of a magnetic iron mineral; they are formed by a diverse group of magnetotactic bacteria (MTB).","definition_xrefs":["PMID:34723168","PMID:19575557"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle assembly","termid":"GO:0070925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"magnetosome assembly","synonyms":[{"name":"magnetosome formation","type":"exact"}],"termid":"GO:0140923"}


id: GO:0010742
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a monocyte acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions.","definition_xrefs":["GOC:tb","GOC:add","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"foam cell differentiation","termid":"GO:0090077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"macrophage derived foam cell differentiation","termid":"GO:0010742"}


id: PBO:0051319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1/OR10-1 (pseudogene)","termid":"PBO:0051319"}


id: GO:0005347
data:
  {"annotated_genes":["SJAG_00612","SJAG_02050"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[107007],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005471"},{"annotations":[98975],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140987"}]},"cv_name":"molecular_function","definition":"Enables the transfer of ATP, adenosine triphosphate, from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenine nucleotide transmembrane transporter activity","termid":"GO:0000295"},{"relation_name":"is_a","term_name":"purine ribonucleotide transmembrane transporter activity","termid":"GO:0005346"},{"relation_name":"is_a","term_name":"organic anion transmembrane transporter activity","termid":"GO:0008514"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00612":null,"SJAG_02050":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"ATP transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9717392","GO:0005348"],"termid":"GO:0005347","terms_by_termid":{"GO:0005471":null,"GO:0140987":null}}


id: FYPO:0004943
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, morphology, or other physical characteristic of the mitochondrion is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal mitochondrion","synonyms":[{"name":"abnormal mitochondria","type":"exact"},{"name":"abnormal mitochondrion during mitotic cell cycle","type":"related"},{"name":"abnormal mitochondrion during vegetative growth","type":"exact"}],"termid":"FYPO:0004943"}


id: PBO:0091286
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not complement S. cerevisiae NRD1","termid":"PBO:0091286"}


id: FYECO:0000416
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in medium containing glucose (typically <2% w/v), salts, water and with L-glutamatic acid as the nitrogen source.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose MM, cysteine nitrogen source","synonyms":[{"name":"glucose minimal medium, cysteine nitrogen source","type":"exact"},{"name":"standard glucose minimal medium, cysteine nitrogen source","type":"related"}],"termid":"FYECO:0000416"}


id: GO:0018053
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a C-terminal peptidyl-valine amide by hydrolysis and oxidation of an interior Val-Gly peptide in a secreted protein.","definition_xrefs":["RESID:AA0100"],"gene_count":0,"genotype_count":0,"name":"obsolete C-terminal peptidyl-valine amidation (obsolete GO:0018053)","termid":"GO:0018053"}


id: PBO:0076447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TAFA chemokine like family member 3","termid":"PBO:0076447"}


id: GO:0120071
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of any pyloric antrum smooth muscle contraction.","definition_xrefs":["PMID:15890336","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gastro-intestinal system smooth muscle contraction","termid":"GO:1904304"},{"relation_name":"regulates","term_name":"pyloric antrum smooth muscle contraction","termid":"GO:0120065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of pyloric antrum smooth muscle contraction","termid":"GO:0120071"}


id: PBO:0053783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1034","termid":"PBO:0053783"}


id: MOD:01659
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that is produced by formation of an adduct with 1-amino-4-{[3-(ethenylsulfonyl)phenyl]amino}-9,10-dioxo-9,10-dihydroanthracene-2-sulfonate, Uniblue A.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Uniblue A derivatized residue","synonyms":[{"name":"1-amino-4-{[3-(ethenylsulfonyl)phenyl]amino}-9,10-dioxo-9,10-dihydroanthracene-2-sulfonic acid","type":"exact"},{"name":"1-amino-9,10-dioxo-4-{[3-(vinylsulfonyl)phenyl]amino}-9,10-dihydroanthracene-2-sulfonic acid","type":"exact"},{"name":"Uniblue A","type":"exact"},{"name":"UniblueARes","type":"exact"}],"termid":"MOD:01659"}


id: PBO:0052894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 10-5","termid":"PBO:0052894"}


id: GO:0052618
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GTP + L-glutamate + factor F420-0 = GDP + H+ + factor gamma-F420-1 + phosphate.","definition_xrefs":["MetaCyc:RXN-8080"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coenzyme F420-0 gamma-glutamyl ligase activity","termid":"GO:0043773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"coenzyme F420-0:L-glutamate ligase activity","secondary_identifiers":["RHEA:30555","EC:6.3.2.31"],"termid":"GO:0052618"}


id: PBO:0041712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CALML3 antisense RNA 1","termid":"PBO:0041712"}


id: GO:0043773
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: (1) GTP + F420-0 + L-glutamate = GDP + phosphate + F420-1, and (2) GTP + F420-1 + L-glutamate = GDP + phosphate + gamma-F420-2. This is the GTP-dependent successive addition of two L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form F420-0-glutamyl-glutamate (F420-2), with a gamma-linkage between the two glutamates.","definition_xrefs":["PMID:17669425"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016874"],"is_obsolete":false,"name":"coenzyme F420-0 gamma-glutamyl ligase activity","synonyms":[{"name":"F420-0 gamma-glutamyl ligase activity","type":"exact"}],"termid":"GO:0043773"}


id: PBO:0042838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 43","termid":"PBO:0042838"}


id: PBO:0028353
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_CTD_phosphatase_activity","termid":"PBO:0028353"}


id: PR:O74309
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- slm9 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74309"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone transcription regulator slm9 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC15D4.03","synonyms":[{"name":"Spom972h-slm9","type":"exact"}],"termid":"PR:O74309"}


id: FYPO:0003448
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is viable, is shaped in the form of a spheroid, has a larger volume than normal, and in which vacuoles are more visible (usually by microscopy) than normal. In a swollen cell, both length and diameter may be greater than normal, although the cell is only considered elongated if the length:diameter ratio is also greater than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"vacuolated","termid":"FYPO:0001581"},{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"is_a","term_name":"viable swollen spheroid vegetative cell","termid":"FYPO:0004559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000005"],"is_obsolete":false,"name":"viable swollen vacuolated spheroid vegetative cell","synonyms":[{"name":"viable enlarged vacuolated spheroid vegetative cell","type":"related"},{"name":"viable enlarged volume vacuolated spheroid vegetative cell","type":"exact"},{"name":"viable large vacuolated spheroid vegetative cell","type":"related"},{"name":"viable swollen rounded vacuolated vegetative cell","type":"exact"},{"name":"viable swollen vacuolated spheroid cell during vegetative growth","type":"exact"},{"name":"viable swollen vacuolated spheroid vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0003448"}


id: SO:0000302
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Recombination signal including J-heptamer, J-spacer and J-nonamer in 5' of J-region of a J-gene or J-sequence.","direct_ancestors":[{"relation_name":"is_a","term_name":"vertebrate_immune_system_gene_recombination_signal_feature","termid":"SO:0000939"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"J_gene_recombination_feature","synonyms":[{"name":"J gene recombination feature","type":"exact"},{"name":"J-RS","type":"exact"}],"termid":"SO:0000302"}


id: GO:0038092
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by nodal protein binding to an activin receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:BHF","GOC:vk","PMID:17287255"],"direct_ancestors":[{"relation_name":"is_a","term_name":"activin receptor signaling pathway","termid":"GO:0032924"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"nodal signaling pathway","synonyms":[{"name":"nodal signaling","type":"exact"},{"name":"nodal signalling pathway","type":"exact"}],"termid":"GO:0038092"}


id: MOD:01334
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to 6x(13)C labeled L-lysine.","definition_xrefs":["OMSSA:138","PubMed:11857757","PubMed:11999733","PubMed:12175151","PubMed:12716131","Unimod:188#K"],"direct_ancestors":[{"relation_name":"is_a","term_name":"6x(13)C labeled residue","termid":"MOD:00544"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6x(13)C labeled L-lysine","synonyms":[{"name":"13C(6) Silac label","type":"related"},{"name":"Label:13C(6)","type":"related"},{"name":"lys-13c6","type":"exact"}],"termid":"MOD:01334"}


id: PBO:0083232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; contained completely within TEL07R","termid":"PBO:0083232"}


id: FYPO:0000261
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. Multiple different phenotypes due to a single mutation.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete pleiotropic effects (obsolete FYPO:0000261)","synonyms":[{"name":"pleiotropic effects during vegetative growth","type":"exact"}],"termid":"FYPO:0000261"}


id: PBO:0084431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAL-activator protein; encoded within the complex locus MAL2; required for maltose and isomaltose utilization","termid":"PBO:0084431"}


id: RO:0002005
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"innervated_by","termid":"RO:0002005"}


id: GO:0044199
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The double lipid bilayer enclosing the host nucleus and separating its contents from the rest of the host cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space).","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell nuclear part","termid":"GO:0044094"},{"relation_name":"part_of","term_name":"host cell endomembrane system","termid":"GO:0033645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell nuclear envelope","termid":"GO:0044199"}


id: PBO:0072043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 13","termid":"PBO:0072043"}


id: GO:0060472
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cortical granule exocytosis by directing movement of calcium ions (Ca2+) into the cytosol.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of calcium ion-dependent exocytosis","termid":"GO:0045956"},{"relation_name":"is_a","term_name":"regulation of cell activation","termid":"GO:0050865"},{"relation_name":"is_a","term_name":"positive regulation of cytosolic calcium ion concentration involved in egg activation","termid":"GO:0060470"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"cortical granule exocytosis","termid":"GO:0060471"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"positive regulation of cortical granule exocytosis by positive regulation of cytosolic calcium ion concentration","synonyms":[{"name":"positive regulation of cortical granule exocytosis by elevation of cytosolic calcium ion concentration","type":"exact"}],"termid":"GO:0060472"}


id: GO:0047455
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 16-alpha-hydroxyprogesterone = H2O + 16-dehydroprogesterone.","definition_xrefs":["MetaCyc:4.2.1.98-RXN","EC:4.2.1.98"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"16-alpha-hydroxyprogesterone dehydratase activity","secondary_identifiers":["GO:0047523","RHEA:12584"],"synonyms":[{"name":"16-alpha-dehydroxylase activity","type":"related"},{"name":"16-alpha-hydroxyprogesterone dehydroxylase activity","type":"related"},{"name":"16-dehydroprogesterone hydratase activity","type":"related"},{"name":"16alpha-dehydroxylase activity","type":"related"},{"name":"16alpha-hydroxyprogesterone dehydratase activity","type":"related"},{"name":"16alpha-hydroxyprogesterone dehydroxylase activity","type":"related"},{"name":"16alpha-hydroxyprogesterone hydro-lyase (16,17-didehydroprogesterone-forming)","type":"related"},{"name":"16alpha-hydroxyprogesterone hydro-lyase activity","type":"related"},{"name":"hydroxyprogesterone dehydroxylase activity","type":"exact"}],"termid":"GO:0047455"}


id: GO:0102909
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: NAD + 2-hydroxyglutarate = H+ + 2-oxoglutarate + NADH.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete alpha-ketoglutarate reductase activity (NADH-dependent) (obsolete GO:0102909)","termid":"GO:0102909"}


id: GO:0038015
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which internalization of an insulin receptor activates or increases the frequency, rate or extent of the insulin receptor signaling pathway. Endocytosis of activated receptors can concentrate receptors within endosomes and allow the insulin receptor to phosphorylate substrates that are spatially distinct from those accessible at the plasma membrane.","definition_xrefs":["PMID:9609114","GOC:signaling","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction by receptor internalization","termid":"GO:0038010"},{"relation_name":"is_a","term_name":"insulin receptor internalization","termid":"GO:0038016"},{"relation_name":"is_a","term_name":"positive regulation of insulin receptor signaling pathway","termid":"GO:0046628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0023052","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"positive regulation of insulin receptor signaling pathway by insulin receptor internalization","synonyms":[{"name":"positive regulation of insulin receptor signalling pathway by insulin receptor internalization","type":"exact"}],"termid":"GO:0038015"}


id: GO:0044364
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process in which an organism has a negative effect on the functioning of the second organism's cells.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete disruption of cells of another organism (obsolete GO:0044364)","synonyms":[{"name":"disruption of cells of other organism","type":"exact"}],"termid":"GO:0044364"}


id: PBO:0089731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology domain protein Opy1","termid":"PBO:0089731"}


id: GO:0050521
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + alpha-glucan + H2O = AMP + phospho-alpha-glucan + phosphate.","definition_xrefs":["EC:2.7.9.4","MetaCyc:2.7.9.4-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, paired acceptors","termid":"GO:0016781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016301","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"alpha-glucan, water dikinase activity","secondary_identifiers":["RHEA:11668"],"synonyms":[{"name":"ATP:alpha-glucan, water phosphotransferase activity","type":"related"},{"name":"GWD","type":"related"},{"name":"a-glucan, water dikinase activity","type":"exact"},{"name":"alpha-glucan,water dikinase activity","type":"related"},{"name":"starch-related R1 protein activity","type":"related"}],"termid":"GO:0050521"}


id: MOD:01101
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because erroneous and apparently redundant to MOD:00111. Remap to MOD:00111.","definition_xrefs":["DeltaMass:0"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:01101 S-Farnesyl- (obsolete MOD:01101)","termid":"MOD:01101"}


id: PBO:0041442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C9orf78 pseudogene 1","termid":"PBO:0041442"}


id: PBO:0075980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal transducer and activator of transcription 5A","termid":"PBO:0075980"}


id: PBO:0062107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily C member 5","termid":"PBO:0062107"}


id: PATO:0001484
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a process which occurs near to or not long before the present.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"onset quality","termid":"PATO:0002325"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recent","termid":"PATO:0001484"}


id: FYPO:0006988
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 occurs to a greater extent than normal at transposable elements.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K9 dimethylation during vegetative growth","termid":"FYPO:0000873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002494","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0002274"],"is_obsolete":false,"name":"increased histone H3-K9 dimethylation at transposable element during vegetative growth","synonyms":[{"name":"increased histone H3 K9 dimethylation at transposable element during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 dimethylation at transposable element during mitotic cell cycle","type":"related"},{"name":"increased histone H3-K9 dimethylation at transposon during vegetative growth","type":"exact"},{"name":"increased histone H3K9 dimethylation at transposable element during vegetative growth","type":"exact"},{"name":"increased histone H3K9me2 at transposable element during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 dimethylation at transposable element during vegetative growth","type":"exact"}],"termid":"FYPO:0006988"}


id: PATO:0000431
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000431 odor value (obsolete PATO:0000431)","termid":"PATO:0000431"}


id: PBO:0050415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HNRNPDL pseudogene 4","termid":"PBO:0050415"}


id: PBO:0043140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capicua transcriptional repressor pseudogene 8","termid":"PBO:0043140"}


id: GO:0043871
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: delta1-piperideine-6-carboxylate + NAD+ + 2 H2O = 2-aminoadipate + NADH + H+. Delta1-piperideine-6-carboxylate is also known as 2,3,4,5-tetrahydropyridine-2-carboxylate.","definition_xrefs":["PMID:16237033","MetaCyc:RXN-8162"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"delta1-piperideine-6-carboxylate dehydrogenase activity","secondary_identifiers":["RHEA:49476"],"synonyms":[{"name":"AmaB","type":"related"},{"name":"PIPOX","type":"related"}],"termid":"GO:0043871"}


id: PBO:0071867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 5","termid":"PBO:0071867"}


id: PBO:0069050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 296, pseudogene","termid":"PBO:0069050"}


id: PBO:0074082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 53","termid":"PBO:0074082"}


id: PBO:0081890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 840, pseudogene","termid":"PBO:0081890"}


id: _global:regulates_o_occurs_in
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"A relation that holds between a regulatory process and the entity which the regulated biological process or molecular function occurs in.","definition_xrefs":["GOC:mtg_berkeley_2012_08_27","GOC:cjm","GOC:dph"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulates_process_that_occurs_in","secondary_identifiers":["GOREL:0001004"],"synonyms":[{"name":"regulates_o_occurs_in","type":"exact"}],"termid":"_global:regulates_o_occurs_in"}


id: PBO:0053653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 706","termid":"PBO:0053653"}


id: FYPO:0004072
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell is too low to detect during a cellular response to a pheromone. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA absent from cell","termid":"FYPO:0001889"},{"relation_name":"is_a","term_name":"decreased RNA level during cellular response to pheromone","termid":"FYPO:0003426"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"RNA absent from cell during cellular response to pheromone","synonyms":[{"name":"transcripts absent from cell during cellular response to pheromone","type":"exact"},{"name":"undetectable RNA level during cellular response to pheromone","type":"exact"}],"termid":"FYPO:0004072"}


id: PR:O42846
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl3401 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42846"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L34-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23A1.08c","synonyms":[{"name":"Spom972h-rpl3401","type":"exact"}],"termid":"PR:O42846"}


id: PBO:0053034
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LARGE intronic transcript 1","termid":"PBO:0053034"}


id: SO:0002323
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A frameshift_variant (SO:0001589) that is degraded by nonsense-mediated decay (NMD).","definition_xrefs":["GenCC:AR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"frameshift_variant","termid":"SO:0001589"},{"relation_name":"is_a","term_name":"NMD_triggering_variant","termid":"SO:0002319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"frameshift_variant_NMD_triggering","synonyms":[{"name":"frameshift variant-NMD triggering","type":"exact"},{"name":"frameshift variant-nonsense-mediated decay triggering","type":"exact"}],"termid":"SO:0002323"}


id: SO:1000023
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Change of a purine nucleotide, A or G , into a pyrimidine nucleotide C or T.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transversion","termid":"SO:1000017"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purine_to_pyrimidine_transversion","synonyms":[{"name":"purine to pyrimidine transversion","type":"exact"}],"termid":"SO:1000023"}


id: GO:0061936
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The binding and fusion of a sperm, with the plasma membrane of the oocyte as part of the process of double fertilization forming a zygote and endosperm.","definition_xrefs":["PMID:21123745"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process involved in reproduction in multicellular organism","termid":"GO:0022412"},{"relation_name":"is_a","term_name":"plasma membrane fusion","termid":"GO:0045026"},{"relation_name":"part_of","term_name":"double fertilization forming a zygote and endosperm","termid":"GO:0009567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"fusion of sperm to egg plasma membrane involved in double fertilization forming a zygote and endosperm","termid":"GO:0061936"}


id: GO:0005700
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A type of chromosome in a polyploid cell, formed when multiple copies of homologous chromosomes are aligned side by side to give a giant chromosome in which distinct chromosome bands are readily visible.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome","termid":"GO:0005694"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005575","GO:0005694"],"is_obsolete":false,"name":"polytene chromosome","secondary_identifiers":["Wikipedia:Polytene_chromosome"],"termid":"GO:0005700"}


id: PBO:0085655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in mitochondrial functions and stress response; overexpression suppresses growth defects of hap2, hap3, and hap4 mutants; MBR1 has a paralog, ISF1, that arose from the whole genome duplication","termid":"PBO:0085655"}


id: PBO:0050209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 26","termid":"PBO:0050209"}


id: GO:0001761
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of beta-alanine from one side of a membrane to the other. Beta-alanine is 3-aminopropanoic acid.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neutral L-amino acid transmembrane transporter activity","termid":"GO:0015175"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transporter activity","termid":"GO:0046943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"beta-alanine transmembrane transporter activity","synonyms":[{"name":"beta-alanine transporter activity","type":"broad"}],"termid":"GO:0001761"}


id: PR:Q9UTQ7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- arp9 gene.","definition_xrefs":["UniProtKB:Q9UTQ7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF and RSC complexes subunit arp9 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1071.06","synonyms":[{"name":"Spom972h-arp9","type":"exact"},{"name":"actin-like protein arp9 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"actin-related protein 9 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"chromatin structure-remodeling complex subunit arp9 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UTQ7"}


id: PBO:0001130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain protein Swi6","termid":"PBO:0001130"}


id: PBO:0060108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND6 pseudogene 9","termid":"PBO:0060108"}


id: PR:O74420
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- wtf13 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74420"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein wtf13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC162.04c","synonyms":[{"name":"Spom972h-wtf13","type":"exact"}],"termid":"PR:O74420"}


id: GO:0005737
data:
  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