# terms

id: PBO:0085733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in thiamine and pyridoxine biosynthesis; member of a stationary phase-induced gene family where transcriptional induction precedes the diauxic shift; induced in the absence of thiamin in a Thi2/3p-dependent manner and repressed in its presence; forms a co-regulated gene pair with SNO2; interacts with Thi11p; paralog of SNZ1 and SNZ3","termid":"PBO:0085733"}


id: PBO:0041404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 6 open reading frame 118","termid":"PBO:0041404"}


id: GO:0050211
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-galactose + procollagen 5-hydroxy-L-lysine = UDP + procollagen 5-(D-galactosyloxy)-L-lysine.","definition_xrefs":["EC:2.4.1.50","MetaCyc:PROCOLLAGEN-GALACTOSYLTRANSFERASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-galactosyltransferase activity","termid":"GO:0035250"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016740","GO:0140096","GO:0003674","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"procollagen galactosyltransferase activity","secondary_identifiers":["Reactome:R-HSA-1981128","Reactome:R-HSA-1981120","RHEA:12637"],"synonyms":[{"name":"UDP galactose-collagen galactosyltransferase activity","type":"related"},{"name":"UDP-galactose:procollagen-5-hydroxy-L-lysine D-galactosyltransferase activity","type":"related"},{"name":"UDPgalactose:5-hydroxylysine-collagen galactosyltransferase activity","type":"related"},{"name":"UDPgalactose:procollagen-5-hydroxy-L-lysine D-galactosyltransferase activity","type":"related"},{"name":"collagen galactosyltransferase activity","type":"related"},{"name":"collagen hydroxylysyl galactosyltransferase activity","type":"related"},{"name":"hydroxylysine galactosyltransferase activity","type":"related"},{"name":"uridine diphosphogalactose-collagen galactosyltransferase activity","type":"related"}],"termid":"GO:0050211"}


id: PBO:0042965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 3","termid":"PBO:0042965"}


id: GO:2000915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of glucuronoxylan catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of xylan catabolic process","termid":"GO:2001000"},{"relation_name":"regulates","term_name":"glucuronoxylan catabolic process","termid":"GO:2000886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"regulation of glucuronoxylan catabolic process","synonyms":[{"name":"regulation of glucuronoxylan catabolism","type":"exact"}],"termid":"GO:2000915"}


id: GO:0000138
data:
  {"annotated_genes":["SJAG_03347","SJAG_03278","SJAG_00567","SJAG_01025","SJAG_03634"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[86481,92193,95637,97290,109201],"is_not":false,"summary":null,"term":"GO:0000138"}]},"cv_name":"cellular_component","definition":"The Golgi cisterna farthest from the endoplasmic reticulum; the final processing compartment through which proteins pass before exiting the Golgi apparatus; the compartment in which N-linked protein glycosylation is completed.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi cisterna","termid":"GO:0031985"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00567":null,"SJAG_01025":null,"SJAG_03278":null,"SJAG_03347":null,"SJAG_03634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0005794"],"is_obsolete":false,"name":"Golgi trans cisterna","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"late Golgi","type":"related"}],"termid":"GO:0000138","terms_by_termid":{"GO:0000138":null}}


id: FYPO:0001897
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain fewer cytoplasmic mRNA processing bodies (P-bodies) than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"is_a","term_name":"P-bodies present in decreased numbers","termid":"FYPO:0001898"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"P-bodies present in decreased numbers during vegetative growth","synonyms":[{"name":"P bodies present in decreased numbers during vegetative growth","type":"exact"},{"name":"P-bodies present in decreased numbers during mitotic cell cycle","type":"related"},{"name":"P-bodies present in reduced numbers during vegetative growth","type":"exact"},{"name":"cytoplasmic mRNA processing bodies present in decreased numbers during vegetative growth","type":"exact"},{"name":"decreased P-body formation during vegetative growth","type":"related"},{"name":"decreased P-body number during vegetative growth","type":"exact"},{"name":"decreased number of P-bodies present during vegetative growth","type":"related"},{"name":"fewer P-bodies present during vegetative growth","type":"exact"}],"termid":"FYPO:0001897"}


id: FYECO:0000058
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which mating pheromone (M factor and P factor) was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ mating pheromone","termid":"FYECO:0000058"}


id: FYPO:0005988
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which microtubule anchoring at the cell cortex of the cell tip does not occur during the meiotic cell cycle. Normally, anchoring maintains the localization of microtubules with their plus ends at the cell cortex.","definition_xrefs":["PomBase:mah","PMID:25736293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton organization","termid":"FYPO:0000054"},{"relation_name":"is_a","term_name":"abnormal protein localization during meiotic cell cycle","termid":"FYPO:0004094"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"},{"relation_name":"is_a","term_name":"abnormal protein localization to cell tip","termid":"FYPO:0005987"},{"relation_name":"is_a","term_name":"localization phenotype during meiotic cell cycle","termid":"FYPO:0006393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000054"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000054","FYPO:0000138"],"is_obsolete":false,"name":"abolished microtubule anchoring at cell cortex of cell tip during meiotic cell cycle","synonyms":[{"name":"abolished microtubule anchoring at cell tip cortex during meiotic cell cycle","type":"exact"},{"name":"abolished microtubule cortical anchoring at cell tip during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0005988"}


id: PBO:0080294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 58 pseudogene","termid":"PBO:0080294"}


id: MOD:00733
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with an N-acetylglucosamine group through a glycosidic bond.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetylhexosaminylated residue","termid":"MOD:00436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"N-acetylaminoglucosylated","synonyms":[{"name":"GlcNAc","type":"exact"}],"termid":"MOD:00733"}


id: PBO:0049363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIi pseudogene 22","termid":"PBO:0049363"}


id: GO:0019159
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-nicotinamide D-ribonucleotide + H2O = beta-nicotinate D-ribonucleotide + NH3.","definition_xrefs":["EC:3.5.1.42"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787","GO:0016810"],"is_obsolete":false,"name":"nicotinamide-nucleotide amidase activity","secondary_identifiers":["MetaCyc:NMNAMIDOHYDRO-RXN","RHEA:12400"],"synonyms":[{"name":"NMN amidohydrolase","type":"narrow"},{"name":"NMN deamidase activity","type":"related"},{"name":"nicotinamide mononucleotide amidohydrolase activity","type":"related"},{"name":"nicotinamide mononucleotide deamidase activity","type":"related"},{"name":"nicotinamide-D-ribonucleotide amidohydrolase activity","type":"related"}],"termid":"GO:0019159"}


id: PBO:0042796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 250","termid":"PBO:0042796"}


id: PBO:0050370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 73","termid":"PBO:0050370"}


id: PR:Q1MTN3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pic1 gene.","definition_xrefs":["UniProtKB:Q1MTN3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inner centromere protein-related protein pic1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC336.15","synonyms":[{"name":"INCENP-related protein pic1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-pic1","type":"exact"}],"termid":"PR:Q1MTN3"}


id: GO:0034562
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,2-bis(4-hydroxyphenyl)-1-propanol + NADH + H+ + O2 = 2,3-bis(4-hydroxyphenyl)-1,2-propanediol + NAD+ + H2O.","definition_xrefs":["UM-BBD_reactionID:r0864"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"2,2-bis(4-hydroxyphenyl)-1-propanol hydroxylase activity","termid":"GO:0034562"}


id: PBO:0003336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol-polyphosphate 5-phosphatase, synaptojanin homolog 2 (predicted)","termid":"PBO:0003336"}


id: FYPO:0005039
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the phosphorylation of the serine residue at position 2 within one or more copies of the heptapeptide repeat (YSPTSPS) of the C-terminal domain of RNA polymerase II occurs to a lower extent than normal when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah","PMID:22144909","GO:0071619"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein phosphorylation during nitrogen starvation","termid":"FYPO:0005034"},{"relation_name":"is_a","term_name":"abnormal RNA polymerase II C-terminal domain phosphorylation","termid":"FYPO:0007410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0002274"],"is_obsolete":false,"name":"decreased phosphorylation of RNA polymerase II C-terminal domain serine 2 residues during nitrogen starvation","synonyms":[{"name":"decreased phosphorylation of RNA polymerase II C-terminal domain serine 2 residues during nitrogen depletion","type":"exact"},{"name":"decreased phosphorylation of RNA polymerase II C-terminal domain serine 2 residues during nitrogen deprivation","type":"exact"},{"name":"reduced phosphorylation of RNA polymerase II CTD serine 2 residues during nitrogen starvation","type":"exact"}],"termid":"FYPO:0005039"}


id: GO:0102439
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3',4',5'-trimethylmyricetin + S-adenosyl-L-methionine = 7,3',4',5'-tetramethylmyricetin + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["GOC:pz","EC:2.1.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016741"],"is_obsolete":false,"name":"3',4',5'-trimethylmyricetin 7-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-13916"],"termid":"GO:0102439"}


id: PBO:0070831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L13a pseudogene 10","termid":"PBO:0070831"}


id: GO:0097186
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the formation of tooth enamel, occurring in two stages: secretory stage and maturation stage.","definition_xrefs":["PMID:21196346","GOC:cjm","GOC:sl","PMID:10206335"],"direct_ancestors":[{"relation_name":"is_a","term_name":"odontogenesis of dentin-containing tooth","termid":"GO:0042475"},{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amelogenesis","synonyms":[{"name":"enamel development","type":"exact"}],"termid":"GO:0097186"}


id: GO:0009099
data:
  {"annotated_genes":["SJAG_00396","SJAG_04149","SJAG_04098","SJAG_03985","SJAG_06635"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86832,99435,106566,107224,109391],"is_not":false,"summary":null,"term":"GO:0009099"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of valine, 2-amino-3-methylbutanoic acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"valine metabolic process","termid":"GO:0006573"},{"relation_name":"is_a","term_name":"branched-chain amino acid biosynthetic process","termid":"GO:0009082"},{"relation_name":"is_a","term_name":"alpha-amino acid biosynthetic process","termid":"GO:1901607"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00396":null,"SJAG_03985":null,"SJAG_04098":null,"SJAG_04149":null,"SJAG_06635":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"valine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:VALSYN-PWY"],"synonyms":[{"name":"valine anabolism","type":"exact"},{"name":"valine biosynthesis","type":"exact"},{"name":"valine formation","type":"exact"},{"name":"valine synthesis","type":"exact"}],"termid":"GO:0009099","terms_by_termid":{"GO:0009099":null}}


id: GO:0039603
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Selective and non-covalent interaction of a viral protein with a member of the class of TATA-binding proteins (TBP) in the host, including any of the TBP-related factors (TRFs), which contributes to the viral-suppression of assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a host DNA template.","definition_xrefs":["GOC:vw","PMID:11968006"],"gene_count":0,"genotype_count":0,"name":"obsolete TBP-class protein binding involved in viral suppression of host transcription initiation from RNA polymerase II promoter (obsolete GO:0039603)","termid":"GO:0039603"}


id: PBO:0060179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metaxin 3","termid":"PBO:0060179"}


id: PBO:0047300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FERM, ARH/RhoGEF and pleckstrin domain protein 2","termid":"PBO:0047300"}


id: PBO:0057232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 411","termid":"PBO:0057232"}


id: PBO:0017949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 Ubc7/UbcP3","termid":"PBO:0017949"}


id: GO:0035697
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of a CD8-positive, alpha-beta T cell from the blood vessels into the surrounding tissue.","definition_xrefs":["GOC:BHF","CL:0000625"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell extravasation","termid":"GO:0072683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CD8-positive, alpha-beta T cell extravasation","termid":"GO:0035697"}


id: PBO:0076517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 19","termid":"PBO:0076517"}


id: PBO:0066982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 285","termid":"PBO:0066982"}


id: GO:0030827
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cGMP.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of cGMP biosynthetic process (obsolete GO:0030827)","synonyms":[{"name":"down regulation of cGMP biosynthetic process","type":"exact"},{"name":"down-regulation of cGMP biosynthetic process","type":"exact"},{"name":"downregulation of cGMP biosynthetic process","type":"exact"},{"name":"inhibition of cGMP biosynthetic process","type":"narrow"},{"name":"negative regulation of cGMP anabolism","type":"exact"},{"name":"negative regulation of cGMP biosynthesis","type":"exact"},{"name":"negative regulation of cGMP formation","type":"exact"},{"name":"negative regulation of cGMP synthesis","type":"exact"}],"termid":"GO:0030827"}


id: PBO:0078277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Cys (anticodon GCA) 10-1","termid":"PBO:0078277"}


id: PBO:0002191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inner centromere protein, shugoshin Sgo2","termid":"PBO:0002191"}


id: PBO:0031422
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cell_viability","termid":"PBO:0031422"}


id: PBO:0030364
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_level_during_cellular_response_to_oxygen","termid":"PBO:0030364"}


id: PBO:0029230
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_autophosphorylation_during_vegetative_growth","termid":"PBO:0029230"}


id: GO:0070244
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of thymocyte death by apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","GOC:add","ISBN:0781765196"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of T cell apoptotic process","termid":"GO:0070233"},{"relation_name":"is_a","term_name":"regulation of thymocyte apoptotic process","termid":"GO:0070243"},{"relation_name":"negatively_regulates","term_name":"thymocyte apoptotic process","termid":"GO:0070242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of thymocyte apoptotic process","synonyms":[{"name":"down regulation of thymocyte apoptosis","type":"exact"},{"name":"down-regulation of thymocyte apoptosis","type":"exact"},{"name":"downregulation of thymocyte apoptosis","type":"exact"},{"name":"inhibition of thymocyte apoptosis","type":"narrow"},{"name":"negative regulation of immature T cell apoptosis","type":"related"},{"name":"negative regulation of thymocyte apoptosis","type":"narrow"}],"termid":"GO:0070244"}


id: GO:0006863
data:
  {"annotated_genes":["SJAG_04717","SJAG_00760","SJAG_03777"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108676],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098702"},{"annotations":[108677],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098710"},{"annotations":[111277],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140140"},{"annotations":[84607],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042906"}]},"cv_name":"biological_process","definition":"The directed movement of purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleobase transport","termid":"GO:0015851"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00760":null,"SJAG_03777":null,"SJAG_04717":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"purine nucleobase transport","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0015852"],"synonyms":[{"name":"purine base transmembrane transport","type":"exact"},{"name":"purine base transport","type":"exact"},{"name":"purine transmembrane transport","type":"related"},{"name":"purine transport","type":"related"}],"termid":"GO:0006863","terms_by_termid":{"GO:0042906":null,"GO:0098702":null,"GO:0098710":null,"GO:0140140":null}}


id: PBO:0066005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ral guanine nucleotide dissociation stimulator","termid":"PBO:0066005"}


id: GO:0052239
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of a specific chemical within a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete negative chemotaxis in other organism involved in symbiotic interaction (obsolete GO:0052239)","synonyms":[{"name":"negative chemotaxis in other organism during symbiotic interaction","type":"related"},{"name":"negative chemotaxis within other organism during symbiotic interaction","type":"related"}],"termid":"GO:0052239"}


id: GO:0072257
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the metanephric nephron tubule as it progresses from its formation to the mature state.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron tubule epithelial cell differentiation","termid":"GO:0072160"},{"relation_name":"is_a","term_name":"cell differentiation involved in metanephros development","termid":"GO:0072202"},{"relation_name":"part_of","term_name":"metanephric nephron tubule development","termid":"GO:0072234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric nephron tubule epithelial cell differentiation","termid":"GO:0072257"}


id: PR:P41878
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 26S proteasome non-ATPase regulatory subunit 14 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10410:SF5","OMA:SCHPO01258","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26S proteasome regulatory subunit rpn11 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31G5.13","secondary_identifiers":["UniProtKB:P41878"],"synonyms":[{"name":"Spom972h-PSMD14","type":"exact"},{"name":"protein pad1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P41878"}


id: GO:1901505
data:
  {"annotated_genes":["SJAG_01177","SJAG_02050","SJAG_03452","SJAG_00339","SJAG_04406","SJAG_04325","SJAG_00612","SJAG_00276","SJAG_04697","SJAG_03334","SJAG_00434","SJAG_01960","SJAG_04162"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97489],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046964"},{"annotations":[97490],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902557"},{"annotations":[102826],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008521"},{"annotations":[107027],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005471"},{"annotations":[98993],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140987"},{"annotations":[86974],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015228"},{"annotations":[89466,59041],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005457"},{"annotations":[85143],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005458"},{"annotations":[89468,89235,108394],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071917"},{"annotations":[108507,111689,84541],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005459"},{"annotations":[108508],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005460"},{"annotations":[101098],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005462"},{"annotations":[101099],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005464"}]},"cv_name":"molecular_function","definition":"Enables the transfer of carbohydrate derivative from one side of a membrane to the other.","definition_xrefs":["GOC:pr","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter activity","termid":"GO:0022857"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00276":null,"SJAG_00339":null,"SJAG_00434":null,"SJAG_00612":null,"SJAG_01177":null,"SJAG_01960":null,"SJAG_02050":null,"SJAG_03334":null,"SJAG_03452":null,"SJAG_04162":null,"SJAG_04325":null,"SJAG_04406":null,"SJAG_04697":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"carbohydrate derivative transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null},"synonyms":[{"name":"carbohydrate derivative transporter activity","type":"related"}],"termid":"GO:1901505","terms_by_termid":{"GO:0005457":null,"GO:0005458":null,"GO:0005459":null,"GO:0005460":null,"GO:0005462":null,"GO:0005464":null,"GO:0005471":null,"GO:0008521":null,"GO:0015228":null,"GO:0046964":null,"GO:0071917":null,"GO:0140987":null,"GO:1902557":null}}


id: GO:0080184
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as the result of a phenylpropanoid stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. A phenylpropanoid is any of secondary metabolites with structures based on a phenylpropane skeleton. The class includes phenylpropanoid esters, flavonoids, anthocyanins, coumarins and many small phenolic molecules. Phenylpropanoids are also precursors of lignin.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organic cyclic compound","termid":"GO:0014070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to phenylpropanoid","termid":"GO:0080184"}


id: PBO:0026845
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_RNA_polymerase_II_carboxy-terminal_domain_kinase_activity","termid":"PBO:0026845"}


id: GO:0031929
data:
  {"annotated_genes":["SJAG_04206","SJAG_03089","SJAG_03405","SJAG_05346","SJAG_01983","SJAG_06588","SJAG_04383","SJAG_00688","SJAG_03928","SJAG_04235","SJAG_00756","SJAG_03799","SJAG_03720","SJAG_03907","SJAG_01187","SJAG_02723","SJAG_01047","SJAG_02605","SJAG_01320","SJAG_03678","SJAG_01142","SJAG_05184","SJAG_00289","SJAG_01703","SJAG_01020","SJAG_04987","SJAG_00143","SJAG_00209","SJAG_03067","SJAG_03355","SJAG_01509","SJAG_02426","SJAG_02424","SJAG_00824","SJAG_02765","SJAG_05030","SJAG_00167","SJAG_00117","SJAG_00169","SJAG_04394","SJAG_03486","SJAG_04460","SJAG_04496","SJAG_02231","SJAG_00875","SJAG_03072","SJAG_04910","SJAG_03529","SJAG_01184","SJAG_00561","SJAG_04249","SJAG_00457","SJAG_03501","SJAG_01032","SJAG_03371","SJAG_00991"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[62042,100098,100440],"is_not":false,"summary":null,"term":"GO:0031929"},{"annotations":[87397],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0032007"},{"annotations":[110116,105808,95010,107086,112618,103274,109296,110705,113169,114331,103526,97581,101246,84194,92240,112262,112368,99145,95703,89454,90311,105394],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1904262"},{"annotations":[112409],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1903940"},{"annotations":[101247,102695],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0032008"},{"annotations":[114472,103275,106672,105395,94152,84485,84195,108993,92241,85576,90458],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1904263"},{"annotations":[103119,87330,93891],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1904515"},{"annotations":[89019,101248,90194,103977,113909,111602],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1903432"},{"annotations":[111053,88224,102784,102808,113251,94698,109160,89338],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0038202"},{"annotations":[95512,97894,114487,98862,102809,104706],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0038203"}]},"cv_name":"biological_process","definition":"The series of molecular signals mediated by TOR (Target of rapamycin) proteins, members of the phosphoinositide (PI) 3-kinase related kinase (PIKK) family that act as serine/threonine kinases in response to nutrient availability or growth factors.","definition_xrefs":["PMID:12372295"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular signal transduction","termid":"GO:0035556"}],"gene_count":56,"genes_by_uniquename":{"SJAG_00117":null,"SJAG_00143":null,"SJAG_00167":null,"SJAG_00169":null,"SJAG_00209":null,"SJAG_00289":null,"SJAG_00457":null,"SJAG_00561":null,"SJAG_00688":null,"SJAG_00756":null,"SJAG_00824":null,"SJAG_00875":null,"SJAG_00991":null,"SJAG_01020":null,"SJAG_01032":null,"SJAG_01047":null,"SJAG_01142":null,"SJAG_01184":null,"SJAG_01187":null,"SJAG_01320":null,"SJAG_01509":null,"SJAG_01703":null,"SJAG_01983":null,"SJAG_02231":null,"SJAG_02424":null,"SJAG_02426":null,"SJAG_02605":null,"SJAG_02723":null,"SJAG_02765":null,"SJAG_03067":null,"SJAG_03072":null,"SJAG_03089":null,"SJAG_03355":null,"SJAG_03371":null,"SJAG_03405":null,"SJAG_03486":null,"SJAG_03501":null,"SJAG_03529":null,"SJAG_03678":null,"SJAG_03720":null,"SJAG_03799":null,"SJAG_03907":null,"SJAG_03928":null,"SJAG_04206":null,"SJAG_04235":null,"SJAG_04249":null,"SJAG_04383":null,"SJAG_04394":null,"SJAG_04460":null,"SJAG_04496":null,"SJAG_04910":null,"SJAG_04987":null,"SJAG_05030":null,"SJAG_05184":null,"SJAG_05346":null,"SJAG_06588":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"TOR signaling","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"synonyms":[{"name":"TOR signal transduction","type":"exact"},{"name":"TOR signaling cascade","type":"related"},{"name":"TOR signaling pathway","type":"exact"},{"name":"TOR signalling pathway","type":"exact"},{"name":"target of rapamycin signaling pathway","type":"exact"},{"name":"target of rapamycin signalling pathway","type":"exact"}],"termid":"GO:0031929","terms_by_termid":{"GO:0031929":null,"GO:0032007":null,"GO:0032008":null,"GO:0038202":null,"GO:0038203":null,"GO:1903432":null,"GO:1903940":null,"GO:1904262":null,"GO:1904263":null,"GO:1904515":null}}


id: PBO:0087254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Serine/threonine protein kinase; inhibits the mitotic exit network (MEN) when the spindle position checkpoint is activated; localized asymmetrically to mother cell cortex, spindle pole body and bud neck; KIN4 has a paralog, FRK1, that arose from the whole genome duplication","termid":"PBO:0087254"}


id: PR:P40236
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hhp2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P40236"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"casein kinase I homolog hhp2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23C4.12","synonyms":[{"name":"Spom972h-hhp2","type":"exact"}],"termid":"PR:P40236"}


id: GO:0015449
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. This term was not defined before being made obsolete.","definition_xrefs":["GOC:mtg_transport"],"gene_count":0,"genotype_count":0,"name":"obsolete type IV protein (DNA-protein) secretor activity (obsolete GO:0015449)","synonyms":[{"name":"type IV protein (DNA-protein) secretor activity","type":"exact"}],"termid":"GO:0015449"}


id: PBO:0066405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RELA proto-oncogene, NF-kB subunit","termid":"PBO:0066405"}


id: PBO:0085131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleolar protein involved in the asymmetric localization of ASH1 mRNA; binds cooperatively with She2p to the E3 zip-code element in the 3'-UTR of the mRNA; constituent of 66S pre-ribosomal particles involved in pre-rRNA processing and nuclear export of the 60S subunit; may facilitate Rpl43p loading; required post-transcriptionally for efficient retrotransposition; absence results in decreased Ty1 Gag:GFP protein levels; relocalizes from nucleus to cytoplasm upon DNA replication stress","termid":"PBO:0085131"}


id: PBO:0068245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 28S ribosomal 2","termid":"PBO:0068245"}


id: PBO:0077151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TLC domain containing 2","termid":"PBO:0077151"}


id: PR:Q9Y7J2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- lam2 gene.","definition_xrefs":["UniProtKB:Q9Y7J2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1778.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1778.05c","synonyms":[{"name":"Spom972h-lam2","type":"exact"}],"termid":"PR:Q9Y7J2"}


id: GO:0032648
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of interferon-beta production.","definition_xrefs":["GOC:mah","PMID:15546383"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of type I interferon production","termid":"GO:0032479"},{"relation_name":"regulates","term_name":"interferon-beta production","termid":"GO:0032608"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of interferon-beta production","secondary_identifiers":["GO:0035547","GO:0045357"],"synonyms":[{"name":"regulation of IFN-beta production","type":"exact"},{"name":"regulation of interferon-beta biosynthetic process","type":"narrow"},{"name":"regulation of interferon-beta secretion","type":"narrow"}],"termid":"GO:0032648"}


id: GO:0072463
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of events in which information about whether spindle is correctly assembled and chromosomes are attached to the spindle is received and converted into a molecular signal, contributing to a meiotic spindle assembly checkpoint.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete detection of stimulus involved in meiotic spindle assembly checkpoint (obsolete GO:0072463)","synonyms":[{"name":"meiotic spindle assembly checkpoint sensor mechanism","type":"related"},{"name":"meiotic spindle assembly checkpoint sensor process","type":"related"},{"name":"sensing involved in meiotic spindle assembly checkpoint","type":"related"}],"termid":"GO:0072463"}


id: GO:0030217
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex.","definition_xrefs":["GO_REF:0000022","GOC:jid","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphocyte differentiation","termid":"GO:0030098"},{"relation_name":"is_a","term_name":"T cell activation","termid":"GO:0042110"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T cell differentiation","secondary_identifiers":["GO:0046652","GO:0042112"],"synonyms":[{"name":"T cell development","type":"related"},{"name":"T lymphocyte differentiation","type":"exact"},{"name":"T-cell differentiation","type":"exact"},{"name":"T-lymphocyte differentiation","type":"exact"}],"termid":"GO:0030217"}


id: PBO:0043751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COX7B pseudogene 6","termid":"PBO:0043751"}


id: GO:0036000
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A small subcellular vesicle, surrounded by a membrane, in the pellicle of ciliate protozoans that discharges a mucus-like secretion.","definition_xrefs":["PMID:10723937","PMID:4629881","GOC:mag"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretory granule","termid":"GO:0030141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0031410","GO:0005737"],"is_obsolete":false,"name":"mucocyst","termid":"GO:0036000"}


id: _global:has_part_that_occurs_in
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_part_that_occurs_in","secondary_identifiers":["RO:0002479"],"termid":"_global:has_part_that_occurs_in"}


id: GO:0016098
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving monoterpenoid compounds, terpenoids having a C10 skeleton.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpenoid metabolic process","termid":"GO:0006721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"monoterpenoid metabolic process","synonyms":[{"name":"monoterpenoid metabolism","type":"exact"}],"termid":"GO:0016098"}


id: GO:0061190
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of the progression of the sclerotome over time, from its initial formation to the mature structure. The sclerotome is the portion of the somite that will give rise to a vertebra.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"regulates","term_name":"sclerotome development","termid":"GO:0061056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of sclerotome development","termid":"GO:0061190"}


id: GO:0045988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of striated muscle contraction.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of striated muscle contraction","termid":"GO:0006942"},{"relation_name":"is_a","term_name":"negative regulation of muscle contraction","termid":"GO:0045932"},{"relation_name":"negatively_regulates","term_name":"striated muscle contraction","termid":"GO:0006941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of striated muscle contraction","synonyms":[{"name":"down regulation of striated muscle contraction","type":"exact"},{"name":"down-regulation of striated muscle contraction","type":"exact"},{"name":"downregulation of striated muscle contraction","type":"exact"},{"name":"inhibition of striated muscle contraction","type":"narrow"}],"termid":"GO:0045988"}


id: GO:0102924
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 H+ + gibberellin A44 + 2-oxoglutarate + O2 = gibberellin A98 + succinate + carbon dioxide.","definition_xrefs":["GOC:pz","EC:1.14.11.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"gibberellin A44,2-oxoglutarate:oxygen oxidoreductase activity","secondary_identifiers":["MetaCyc:RXN-886"],"termid":"GO:0102924"}


id: PBO:0055571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3007","termid":"PBO:0055571"}


id: GO:0052601
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: limonene + NAD(P)H + H+ + O2 = NAD(P)+ + H2O + limonene-1,2-epoxide. Can use either (4S)-limonene or (4R)-limonene as substrate. NADPH can act instead of NADH, although more slowly.","definition_xrefs":["PMID:8820855","EC:1.14.13.107"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"},{"relation_name":"is_a","term_name":"limonene monooxygenase activity","termid":"GO:0019113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"limonene 1,2-monooxygenase activity","secondary_identifiers":["UM-BBD_enzymeID:e0462"],"synonyms":[{"name":"(-)-limonene 1,2-monooxygenase activity","type":"related"},{"name":"(-)-limonene,NAD(P)H:oxygen oxidoreductase activity","type":"related"},{"name":"(S)-limonene 1,2-monooxygenase activity","type":"narrow"},{"name":"(S)-limonene,NAD(P)H:oxygen oxidoreductase activity","type":"exact"}],"termid":"GO:0052601"}


id: FYPO:0004929
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which  the nucleus is broken into multiple small fragments, smaller than a normal nucleus, during the meiotic cell cycle.","definition_xrefs":["PomBase:mah","PMID:20410137"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fragmented nucleus","termid":"FYPO:0006661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002403"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0002403"],"is_obsolete":false,"name":"fragmented nucleus during meiotic cell cycle","synonyms":[{"name":"fragmented DNA during meiotic cell cycle","type":"related"},{"name":"loss of nuclear integrity during meiotic cell cycle","type":"related"},{"name":"nuclear fragmentation during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0004929"}


id: PBO:0063934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pim-3 proto-oncogene, serine/threonine kinase","termid":"PBO:0063934"}


id: PBO:0001244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallopeptidase (predicted)","termid":"PBO:0001244"}


id: GO:0015116
data:
  {"annotated_genes":["SJAG_01941","SJAG_02463","SJAG_00671"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84589,96481,112758],"is_not":false,"summary":null,"term":"GO:0015116"},{"annotations":[106255],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008271"}]},"cv_name":"molecular_function","definition":"Enables the transfer of sulfate ions, SO4(2-), from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic anion transmembrane transporter activity","termid":"GO:0015103"},{"relation_name":"is_a","term_name":"sulfur compound transmembrane transporter activity","termid":"GO:1901682"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00671":null,"SJAG_01941":null,"SJAG_02463":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"sulfate transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-3560789","Reactome:R-HSA-427555","Reactome:R-HSA-8875871","RHEA:34983"],"synonyms":[{"name":"sulfate permease activity","type":"related"},{"name":"sulphate transporter activity","type":"exact"}],"termid":"GO:0015116","terms_by_termid":{"GO:0008271":null,"GO:0015116":null}}


id: PBO:0091988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf element Wtf24 (frameshifted)","termid":"PBO:0091988"}


id: PBO:0034814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDP-diacylglycerol-serine O-phosphatidyltransferase Pps1","termid":"PBO:0034814"}


id: GO:0098622
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + selenodiglutathione + NADPH = gluthathioselenol + glutathione + NADP+.","definition_xrefs":["PMID:1569062"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disulfide oxidoreductase activity","termid":"GO:0015036"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor","termid":"GO:0016668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0015036"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0015036","GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"selenodiglutathione-disulfide reductase (NADPH) activity","secondary_identifiers":["RHEA:34927","Reactome:R-HSA-2408542"],"synonyms":[{"name":"selenodiglutathione-disulfide reductase (NADP) activity","type":"exact"},{"name":"selenodiglutathione-disulfide reductase activity","type":"broad"}],"termid":"GO:0098622"}


id: PBO:0073966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 22 member 15","termid":"PBO:0073966"}


id: GO:1904928
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any coreceptor activity that is involved in a canonical Wnt signaling pathway.","definition_xrefs":["GO_REF:0000061","GOC:PARL","GOC:bf","PMID:24431302","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete coreceptor activity involved in canonical Wnt signaling pathway (obsolete GO:1904928)","synonyms":[{"name":"Wnt co-receptor activity, canonical signaling","type":"exact"},{"name":"Wnt co-receptor, canonical pathway","type":"exact"},{"name":"coreceptor activity involved in Wnt receptor signaling pathway through beta-catenin","type":"exact"},{"name":"coreceptor activity involved in Wnt receptor signaling pathway via beta-catenin","type":"exact"},{"name":"coreceptor activity involved in Wnt receptor signalling pathway through beta-catenin","type":"exact"},{"name":"coreceptor activity involved in canonical Wnt receptor signaling pathway","type":"exact"},{"name":"coreceptor activity involved in canonical Wnt-activated signaling pathway","type":"exact"},{"name":"coreceptor activity involved in frizzled-1 receptor signaling pathway","type":"narrow"},{"name":"coreceptor, insoluble ligand activity involved in Wnt receptor signaling pathway through beta-catenin","type":"related"},{"name":"coreceptor, insoluble ligand activity involved in Wnt receptor signaling pathway via beta-catenin","type":"related"},{"name":"coreceptor, insoluble ligand activity involved in Wnt receptor signalling pathway through beta-catenin","type":"related"},{"name":"coreceptor, insoluble ligand activity involved in canonical Wnt receptor signaling pathway","type":"related"},{"name":"coreceptor, insoluble ligand activity involved in canonical Wnt signaling pathway","type":"related"},{"name":"coreceptor, insoluble ligand activity involved in canonical Wnt-activated signaling pathway","type":"related"},{"name":"coreceptor, insoluble ligand activity involved in frizzled-1 receptor signaling pathway","type":"related"},{"name":"coreceptor, soluble ligand activity involved in Wnt receptor signaling pathway through beta-catenin","type":"related"},{"name":"coreceptor, soluble ligand activity involved in Wnt receptor signaling pathway via beta-catenin","type":"related"},{"name":"coreceptor, soluble ligand activity involved in Wnt receptor signalling pathway through beta-catenin","type":"related"},{"name":"coreceptor, soluble ligand activity involved in canonical Wnt receptor signaling pathway","type":"related"},{"name":"coreceptor, soluble ligand activity involved in canonical Wnt signaling pathway","type":"related"},{"name":"coreceptor, soluble ligand activity involved in canonical Wnt-activated signaling pathway","type":"related"},{"name":"coreceptor, soluble ligand activity involved in frizzled-1 receptor signaling pathway","type":"related"}],"termid":"GO:1904928"}


id: GO:0006879
data:
  {"annotated_genes":["SJAG_02457","SJAG_04031","SJAG_00802","SJAG_03862","SJAG_04677","SJAG_04675","SJAG_02735","SJAG_04032","SJAG_04867","SJAG_02474","SJAG_01694","SJAG_02834","SJAG_00532","SJAG_01004","SJAG_00792","SJAG_04607","SJAG_04743","SJAG_00822"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73842,85426,88435,89083,90197,92423,96615,100392,103541,110014],"is_not":false,"summary":null,"term":"GO:0006879"},{"annotations":[90249,88581,90241,99926],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010106"},{"annotations":[99935],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006880"},{"annotations":[88582,99928,88578,108927],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033215"},{"annotations":[106915,61619,61335,106914],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033214"}]},"cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of iron ions within a cell.","definition_xrefs":["GOC:mah","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular monoatomic cation homeostasis","termid":"GO:0030003"},{"relation_name":"is_a","term_name":"inorganic ion homeostasis","termid":"GO:0098771"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00532":null,"SJAG_00792":null,"SJAG_00802":null,"SJAG_00822":null,"SJAG_01004":null,"SJAG_01694":null,"SJAG_02457":null,"SJAG_02474":null,"SJAG_02735":null,"SJAG_02834":null,"SJAG_03862":null,"SJAG_04031":null,"SJAG_04032":null,"SJAG_04607":null,"SJAG_04675":null,"SJAG_04677":null,"SJAG_04743":null,"SJAG_04867":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098771"}],"interesting_parent_ids":["GO:0098771","GO:0008150"],"is_obsolete":false,"name":"intracellular iron ion homeostasis","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"cellular iron ion homeostasis","type":"exact"},{"name":"iron homeostasis","type":"broad"}],"termid":"GO:0006879","terms_by_termid":{"GO:0006879":null,"GO:0006880":null,"GO:0010106":null,"GO:0033214":null,"GO:0033215":null}}


id: PBO:0091846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific microprotein Smp2","termid":"PBO:0091846"}


id: PBO:0002560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-alpha-hydroxytetrahydrobiopterin dehydratase (predicted)","termid":"PBO:0002560"}


id: SO:0000895
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing an epigenetic process where a gene is inactivated by DNA methylation, resulting in repression of transcription.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"silenced_by_DNA_modification","termid":"SO:0000894"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"silenced_by_DNA_methylation","synonyms":[{"name":"silenced by DNA methylation","type":"exact"}],"termid":"SO:0000895"}


id: PBO:0058671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6799","termid":"PBO:0058671"}


id: GO:0050897
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a cobalt ion (Co2+).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transition metal ion binding","termid":"GO:0046914"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0046872"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0046872","GO:0003674"],"is_obsolete":false,"name":"cobalt ion binding","synonyms":[{"name":"Co ion binding","type":"exact"},{"name":"cobalt binding","type":"exact"}],"termid":"GO:0050897"}


id: PBO:0087249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Serine/threonine MAP kinase; coordinates expression of all 19S regulatory particle assembly-chaperones (RACs) to control proteasome abundance; involved in regulating maintenance of cell wall integrity, cell cycle progression, nuclear mRNA retention in heat shock, septum assembly; required for mitophagy, pexophagy; affects recruitment of mitochondria to phagophore assembly site; plays role in adaptive response of cells to cold; regulated by the PKC1-mediated signaling pathway","termid":"PBO:0087249"}


id: FYPO:0002817
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the first meiotic nuclear division is arrested under conditions where arrest does not normally occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormally arrested meiosis","termid":"FYPO:0000475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormally arrested meiosis I","synonyms":[{"name":"abnormal cell cycle arrest in meiosis I","type":"exact"},{"name":"abnormally arrested first meiotic nuclear division","type":"exact"}],"termid":"FYPO:0002817"}


id: GO:0098786
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that results in the disassembly of a biofilm matrix.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix disassembly","termid":"GO:0022617"},{"relation_name":"is_a","term_name":"biofilm matrix organization","termid":"GO:0098784"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"biofilm matrix disassembly","termid":"GO:0098786"}


id: SO:0001690
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The restriction enzyme cleavage junction on the 3' strand of the nucleotide sequence.","direct_ancestors":[{"relation_name":"is_a","term_name":"single_strand_restriction_enzyme_cleavage_site","termid":"SO:0001694"},{"relation_name":"part_of","term_name":"sticky_end_restriction_enzyme_cleavage_site","termid":"SO:0001692"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three_prime_restriction_enzyme_junction","synonyms":[{"name":"3' restriction enzyme junction","type":"exact"}],"termid":"SO:0001690"}


id: GO:0034583
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a 21U-RNA, a 21-nucleotide RNA characterized by a uridine 5'-monophosphate and a modified 3' end resistant to periodate degradation. 21U-RNAs are derived from distinct, autonomously expressed loci within the genome.","definition_xrefs":["GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA binding","termid":"GO:0003723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003723"],"is_obsolete":false,"name":"21U-RNA binding","termid":"GO:0034583"}


id: GO:0019060
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a viral protein within the host cell.","definition_xrefs":["ISBN:0781702534","PMID:11581394","PMID:9188566","ISBN:0781718325","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont intracellular protein transport in host","termid":"GO:0030581"},{"relation_name":"part_of","term_name":"regulation by virus of viral protein levels in host cell","termid":"GO:0046719"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"intracellular transport of viral protein in host cell","secondary_identifiers":["GO:0046742","GO:0046801","GO:0046743"],"synonyms":[{"name":"cytoplasmic viral capsid transport","type":"narrow"},{"name":"intracellular transport of viral capsid in host cell","type":"narrow"},{"name":"intracellular transport of viral capsid protein in host cell","type":"narrow"},{"name":"intracellular transport of viral proteins in host cell","type":"exact"},{"name":"intracellular viral capsid transport","type":"narrow"},{"name":"intracellular viral protein transport","type":"exact"},{"name":"nuclear viral capsid transport","type":"narrow"},{"name":"viral capsid transport in host cell cytoplasm","type":"narrow"},{"name":"viral capsid transport in host cell nucleus","type":"narrow"}],"termid":"GO:0019060"}


id: MOD:00105
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to L-serine amide.","definition_xrefs":["RESID:AA0096","PubMed:743209"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C1-amidated residue","termid":"MOD:00883"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-serine amide","synonyms":[{"name":"(2S)-2-amino-3-hydroxypropanamide","type":"exact"},{"name":"L-serine amide","type":"exact"},{"name":"MOD_RES Serine amide","type":"exact"},{"name":"SerN","type":"exact"},{"name":"amidated L-serine","type":"exact"},{"name":"serinamide","type":"exact"}],"termid":"MOD:00105"}


id: PBO:0083151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps ORF RAV2/YDR202C","termid":"PBO:0083151"}


id: PBO:0051368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 3D-11","termid":"PBO:0051368"}


id: GO:0070549
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An siRNA-mediated post-transcriptional gene silencing pathway that blocks the translation of target mRNAs into proteins. Once incorporated into a RNA-induced silencing complex (RISC), an siRNA will typically mediate repression of translation if the siRNA perfectly complements elements located in the 3' untranslated region of target mRNAs.","definition_xrefs":["GOC:mah","PMID:18771919"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of translation","termid":"GO:0017148"},{"relation_name":"is_a","term_name":"siRNA-mediated post-transcriptional gene silencing","termid":"GO:0140766"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"siRNA-mediated gene silencing by inhibition of translation","synonyms":[{"name":"RNA interference, negative regulation of translation","type":"exact"},{"name":"down regulation of translation involved in RNA interference","type":"broad"},{"name":"down-regulation of translation involved in RNA interference","type":"broad"},{"name":"downregulation of translation involved in RNA interference","type":"broad"},{"name":"inhibition of translation involved in RNA interference","type":"broad"},{"name":"negative regulation of translation involved in RNA interference","type":"broad"}],"termid":"GO:0070549"}


id: GO:0001993
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the secretion of norepinephrine or epinephrine into the bloodstream modulates the force with which blood passes through the circulatory system.","definition_xrefs":["ISBN:0721643949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of systemic arterial blood pressure mediated by a chemical signal","termid":"GO:0003044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of systemic arterial blood pressure by norepinephrine-epinephrine","synonyms":[{"name":"noradrenaline-adrenaline regulation of blood pressure","type":"related"},{"name":"norepinephrine-epinephrine blood pressure control","type":"related"},{"name":"norepinephrine-epinephrine blood pressure regulation","type":"exact"}],"termid":"GO:0001993"}


id: PBO:0050906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon induced protein 44 like","termid":"PBO:0050906"}


id: GO:1990393
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex, at least composed of CUL7, CCDC8 and OBSL1, that is required for maintaining microtubule and genome integrity.","definition_xrefs":["PMID:24793695","PMID:24793696"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"3M complex","termid":"GO:1990393"}


id: GO:2000817
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any regulation of histone H3-T3 phosphorylation that is involved in chromosome passenger complex localization to kinetochore.","definition_xrefs":["GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of histone H3-T3 phosphorylation involved in chromosome passenger complex localization to kinetochore (obsolete GO:2000817)","synonyms":[{"name":"regulation of histone H3-T3 phosphorylation involved in CPC complex localization to kinetochore","type":"exact"},{"name":"regulation of histone H3-T3 phosphorylation involved in CPC localization to kinetochore","type":"exact"},{"name":"regulation of histone H3-T3 phosphorylation involved in chromosomal passenger complex localization to kinetochore","type":"exact"},{"name":"regulation of histone H3-T3 phosphorylation involved in chromosome passenger complex localisation to kinetochore","type":"related"}],"termid":"GO:2000817"}


id: GO:0098021
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Component of the virus capsid (head), located on the outer head surface. Involved in the stabilization of the head structure and usually non-essential.","definition_xrefs":["VZ:4398","GOC:bm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"virion component","termid":"GO:0044423"},{"relation_name":"part_of","term_name":"viral capsid","termid":"GO:0019028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"viral capsid, decoration","synonyms":[{"name":"decoration protein","type":"related"}],"termid":"GO:0098021"}


id: PBO:0004980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5.8S ribosomal RNA","termid":"PBO:0004980"}


id: PBO:0011154
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Metachromatic leukodystrophy","termid":"PBO:0011154"}


id: PBO:0084427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Major orotate phosphoribosyltransferase (OPRTase) isozyme; catalyzes the fifth enzymatic step in de novo biosynthesis of pyrimidines, converting orotate into orotidine-5'-phosphate; URA5 has a paralog, URA10, that arose from the whole genome duplication","termid":"PBO:0084427"}


id: PBO:0038894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adhesion G protein-coupled receptor A1","termid":"PBO:0038894"}


id: PBO:0073645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIGLEC family like 1","termid":"PBO:0073645"}


id: PBO:0040722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL10 antisense RNA 1","termid":"PBO:0040722"}


id: FYPO:0003013
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which contractile ring disassembly is abnormal. Contractile ring disassembly is the part of cytokinesis in which the actomyosin contractile ring is disaggregated into its constituent components.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cytokinesis","termid":"FYPO:0000032"},{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring organization","termid":"FYPO:0004738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0000032","FYPO:0001985","FYPO:0004803"],"is_obsolete":false,"name":"abnormal actomyosin contractile ring disassembly","synonyms":[{"name":"abnormal actomyosin contractile ring disassembly during mitotic cell cycle","type":"related"},{"name":"abnormal actomyosin contractile ring disassembly during vegetative growth","type":"exact"},{"name":"abnormal contractile ring disassembly","type":"exact"},{"name":"abnormal cytokinesis, actomyosin contractile ring disassembly","type":"exact"},{"name":"abnormal cytokinetic contractile ring disassembly","type":"exact"},{"name":"abnormal cytokinetic ring disassembly","type":"related"},{"name":"abnormal mitotic actomyosin contractile ring disassembly","type":"exact"},{"name":"abnormal mitotic contractile ring disassembly","type":"exact"}],"termid":"FYPO:0003013"}


id: PBO:0074626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 22C","termid":"PBO:0074626"}


id: GO:0048909
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the anterior lateral line nerve over time, form its formation to the mature structure. The anterior lateral line nerve contains efferent axons that innervate hair cells of the ALL and afferent axons that project to an octavolateralis column in the hindbrain. The octavolateralis column consists of the medial octavolateralis nucleus (MON), the caudal octavolateralis nucleus, and the magnocellular nucleus.","definition_xrefs":["GOC:jid","GO_REF:0000021","ISBN:0125296509","GOC:dph","GOC:cls","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lateral line nerve development","termid":"GO:0048892"},{"relation_name":"part_of","term_name":"anterior lateral line system development","termid":"GO:0048898"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior lateral line nerve development","secondary_identifiers":["GO:0021734"],"synonyms":[{"name":"ALLN development","type":"exact"},{"name":"nALL development","type":"exact"},{"name":"rostral lateral line nerve development","type":"exact"}],"termid":"GO:0048909"}


id: FYPO:0005333
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to methyl methanesulfonate is higher than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level during vegetative growth","termid":"FYPO:0001327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0006551","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased protein level during cellular response to methyl methanesulfonate","synonyms":[{"name":"increased protein accumulation during cellular response to methyl methanesulfonate","type":"related"},{"name":"increased protein level during cellular response to MMS","type":"exact"},{"name":"increased protein level during cellular response to methyl methanesulfonate during mitotic cell cycle","type":"related"},{"name":"increased protein level during cellular response to methyl methanesulfonate during vegetative growth","type":"exact"}],"termid":"FYPO:0005333"}


id: GO:0003290
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which anatomical structure of an atrial septum secundum is generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atrial septum morphogenesis","termid":"GO:0060413"},{"relation_name":"part_of","term_name":"septum secundum development","termid":"GO:0003285"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"atrial septum secundum morphogenesis","termid":"GO:0003290"}


id: PBO:0043684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coactosin like F-actin binding protein 1","termid":"PBO:0043684"}


id: GO:1903759
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any signal transduction that is involved in regulation of aerobic respiration.","definition_xrefs":["PMID:19266076","GO_REF:0000060","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete signal transduction involved in regulation of aerobic respiration (obsolete GO:1903759)","synonyms":[{"name":"signaling cascade involved in regulation of aerobic respiration","type":"narrow"},{"name":"signaling pathway involved in regulation of aerobic respiration","type":"related"},{"name":"signalling cascade involved in regulation of aerobic respiration","type":"narrow"},{"name":"signalling pathway involved in regulation of aerobic respiration","type":"related"}],"termid":"GO:1903759"}


id: PR:Q10077
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- snt2 gene.","definition_xrefs":["UniProtKB:Q10077","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lid2 complex component snt2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H1.12c","synonyms":[{"name":"Lid2C component snt2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-snt2","type":"exact"}],"termid":"PR:Q10077"}


id: PATO:0000274
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive quality","termid":"PATO:0001434"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fertility","termid":"PATO:0000274"}


id: GO:0048345
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of paraxial mesoderm cell fate determination.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mesodermal cell fate determination","termid":"GO:0048334"},{"relation_name":"regulates","term_name":"paraxial mesodermal cell fate determination","termid":"GO:0048344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of paraxial mesodermal cell fate determination","termid":"GO:0048345"}


id: GO:0004529
data:
  {"annotated_genes":["SJAG_01163","SJAG_01173","SJAG_01832","SJAG_05280","SJAG_02298","SJAG_04410","SJAG_02818","SJAG_01648","SJAG_05373","SJAG_03734","SJAG_02908"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101347,105243],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008296"},{"annotations":[89123,93271,84566],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035312"},{"annotations":[111806],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033699"},{"annotations":[84723,106086],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008311"},{"annotations":[103890,93274],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051908"},{"annotations":[103484,84726],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008310"},{"annotations":[93276,107717],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045145"}]},"cv_name":"molecular_function","definition":"Catalysis of the sequential cleavage of mononucleotides from a free 5' or 3' terminus of a DNA molecule.","definition_xrefs":["ISBN:0198547684","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exonuclease activity","termid":"GO:0004527"},{"relation_name":"is_a","term_name":"DNA nuclease activity","termid":"GO:0004536"}],"gene_count":11,"genes_by_uniquename":{"SJAG_01163":null,"SJAG_01173":null,"SJAG_01648":null,"SJAG_01832":null,"SJAG_02298":null,"SJAG_02818":null,"SJAG_02908":null,"SJAG_03734":null,"SJAG_04410":null,"SJAG_05280":null,"SJAG_05373":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004527"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0003824","GO:0004527","GO:0016788","GO:0003674","GO:0016787","GO:0140097"],"is_obsolete":false,"name":"DNA exonuclease activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0004529","terms_by_termid":{"GO:0008296":null,"GO:0008310":null,"GO:0008311":null,"GO:0033699":null,"GO:0035312":null,"GO:0045145":null,"GO:0051908":null}}


id: PBO:0078539
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRIM31 antisense RNA 1","termid":"PBO:0078539"}


id: PBO:0081653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 578","termid":"PBO:0081653"}


id: PBO:0060703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit A5","termid":"PBO:0060703"}


id: PBO:0065067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich protein HaeIII subfamily 1","termid":"PBO:0065067"}


id: GO:0018110
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: histone L-arginine + ATP = histone N(omega)-phospho-L-arginine + ADP + 2 H+.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete histone arginine kinase activity (obsolete GO:0018110)","synonyms":[{"name":"histone-arginine kinase activity","type":"exact"}],"termid":"GO:0018110"}


id: PBO:0046835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid binding protein 5 pseudogene 8","termid":"PBO:0046835"}


id: GO:1901213
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the development of the heart over time.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter involved in heart development (obsolete GO:1901213)","synonyms":[{"name":"global transcription regulation from Pol II promoter involved in cardiac development","type":"related"},{"name":"global transcription regulation from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"global transcription regulation from Pol II promoter involved in heart development","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development","type":"related"},{"name":"regulation of global transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"regulation of global transcription from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"regulation of global transcription from Pol II promoter involved in heart development","type":"related"},{"name":"regulation of transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"regulation of transcription from Pol II promoter involved in dorsal vessel development","type":"narrow"},{"name":"regulation of transcription from Pol II promoter involved in heart development","type":"exact"},{"name":"regulation of transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"narrow"},{"name":"regulation of transcription from RNA polymerase II promoter, global involved in cardiac development","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global involved in heart development","type":"related"}],"termid":"GO:1901213"}


id: GO:1904323
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of inhibitory G protein-coupled receptor phosphorylation.","definition_xrefs":["PMID:15937517","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein phosphorylation","termid":"GO:0001932"},{"relation_name":"regulates","term_name":"inhibitory G protein-coupled receptor phosphorylation","termid":"GO:0002030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of inhibitory G protein-coupled receptor phosphorylation","synonyms":[{"name":"regulation of inhibitory G-protein coupled receptor phosphorylation","type":"exact"}],"termid":"GO:1904323"}


id: PBO:0054490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1890","termid":"PBO:0054490"}


id: GO:0061586
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription using a mechanism that involves the localization of a transcription factor.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization","termid":"GO:0008104"},{"relation_name":"is_a","term_name":"positive regulation of DNA-templated transcription","termid":"GO:0045893"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006355","GO:0010467","GO:0006351","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"positive regulation of transcription by transcription factor localization","termid":"GO:0061586"}


id: PBO:0002508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic cysteine-tRNA ligase Crs1 (predicted)","termid":"PBO:0002508"}


id: MOD:01865
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a protein N-terminal with the Applied Biosystems mTRAQ light reporter+balance group.","definition_xrefs":["Unimod:888#N-term","OMSSA:208"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mTRAQ light reporter+balance reagent acylated residue","termid":"MOD:01864"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"mTRAQ light reporter+balance reagent acylated N-terminal","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems mTRAQ(TM) reagent","type":"related"},{"name":"mTRAQ light","type":"related"},{"name":"mTRAQ light on nterm","type":"exact"}],"termid":"MOD:01865"}


id: PBO:0086263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that regulates telomeric length; protects telomeric ends in a complex with Cdc13p and Stn1p; similar to human Ten1 which is critical for the telomeric function of the CST (Cdc13p-Stn1p-Ten1p) complex","termid":"PBO:0086263"}


id: PBO:0003371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA ligase (predicted)","termid":"PBO:0003371"}


id: PBO:0087734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the signal recognition particle (SRP); SRP functions in protein targeting to the endoplasmic reticulum membrane; not found in mammalian SRP; forms a pre-SRP structure in the nucleolus that is translocated to the cytoplasm","termid":"PBO:0087734"}


id: GO:0018359
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The linkage of protein to heme P460 via heme P460-bis-L-cysteine-L-tyrosine.","definition_xrefs":["RESID:AA0266"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-heme P460 linkage","termid":"GO:0018174"},{"relation_name":"is_a","term_name":"peptidyl-cysteine modification","termid":"GO:0018198"},{"relation_name":"is_a","term_name":"peptidyl-tyrosine modification","termid":"GO:0018212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0065003"],"is_obsolete":false,"name":"protein-heme P460 linkage via heme P460-bis-L-cysteine-L-tyrosine","secondary_identifiers":["GO:0018385"],"synonyms":[{"name":"protein-haem P460 linkage via haem P460-bis-L-cysteine-L-tyrosine","type":"exact"}],"termid":"GO:0018359"}


id: SO:0001354
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"5_hydroxyuridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_hydroxyuridine","secondary_identifiers":["RNAMOD:060"],"synonyms":[{"name":"5-hydroxyuridine","type":"exact"},{"name":"five hydroxyuridine","type":"exact"},{"name":"ho5U","type":"exact"}],"termid":"SO:0001354"}


id: PATO:0000126
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000126 absolute mass (obsolete PATO:0000126)","termid":"PATO:0000126"}


id: PBO:0079110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA splicing endonuclease subunit 2","termid":"PBO:0079110"}


id: PBO:0067047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 67, pseudogene","termid":"PBO:0067047"}


id: PBO:0039041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AGBL carboxypeptidase 3","termid":"PBO:0039041"}


id: PBO:0058982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mixed lineage kinase domain like pseudokinase","termid":"PBO:0058982"}


id: PBO:0001622
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.6.1","termid":"PBO:0001622"}


id: GO:0032184
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a polymer of the small ubiquitin-like protein SUMO.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SUMO binding","termid":"GO:0032183"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"SUMO polymer binding","synonyms":[{"name":"Smt3 polymer binding","type":"exact"}],"termid":"GO:0032184"}


id: FYPO:0004172
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is decreased during a cellular response to heat.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein kinase activity","termid":"FYPO:0001382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0001985","FYPO:0000654","FYPO:0000661"],"is_obsolete":false,"name":"decreased protein kinase activity during cellular response to heat","synonyms":[{"name":"decreased protein kinase activity during cellular response to heat stress","type":"exact"},{"name":"reduced protein kinase activity during cellular response to heat","type":"exact"}],"termid":"FYPO:0004172"}


id: GO:0018996
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The periodic shedding of part or all of a collagen and cuticulin-based cuticle, which is then replaced by a new collagen and cuticulin-based cuticle. An example of this is found in the Nematode worm, Caenorhabditis elegans.","definition_xrefs":["GOC:mtg_sensu","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molting cycle","termid":"GO:0042303"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"molting cycle, collagen and cuticulin-based cuticle","synonyms":[{"name":"collagen and cuticulin-based cuticle molting cycle","type":"exact"}],"termid":"GO:0018996"}


id: GO:0019035
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A nucleoprotein complex containing viral genetic material and the viral integrase, required for genome integration into the host's genome. May contain other proteins.","definition_xrefs":["PMID:21037296","PMID:2721960","PMID:29900498"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"host cell","termid":"GO:0043657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"viral integration complex","secondary_identifiers":["Wikipedia:Pre-integration_complex"],"synonyms":[{"name":"PIC","type":"broad"},{"name":"pre-integration complex","type":"exact"}],"termid":"GO:0019035"}


id: PBO:0071353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L29 pseudogene 12","termid":"PBO:0071353"}


id: PBO:0090974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichyl-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase Alg3","termid":"PBO:0090974"}


id: GO:0075101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of protein kinase-mediated signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation by host of symbiont protein kinase-mediated signal transduction (obsolete GO:0075101)","termid":"GO:0075101"}


id: SO:0001168
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non directional promoter motif with consensus sequence GAAAGCT.","definition_xrefs":["PMID:16827941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"},{"relation_name":"part_of","term_name":"RNApol_II_promoter","termid":"SO:0000170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NDM3_motif","synonyms":[{"name":"NDM3","type":"exact"},{"name":"NDM3 motif","type":"exact"},{"name":"non directional motif 3","type":"exact"}],"termid":"SO:0001168"}


id: PBO:0065234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 13 pseudogene 2","termid":"PBO:0065234"}


id: GO:0043547
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the activity of a GTPase.","definition_xrefs":["GOC:jl","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of GTPase activity","termid":"GO:0043087"},{"relation_name":"is_a","term_name":"positive regulation of hydrolase activity","termid":"GO:0051345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of GTPase activity","secondary_identifiers":["GO:0032853","GO:0032321","GO:0032854","GO:0032855","GO:0032851","GO:0032320","GO:0032850","GO:0032852","GO:0043089"],"synonyms":[{"name":"activation of GTPase activity","type":"narrow"},{"name":"positive regulation of ARF GTPase activity","type":"narrow"},{"name":"positive regulation of Cdc42 GTPase activity","type":"narrow"},{"name":"positive regulation of Rab GTPase activity","type":"narrow"},{"name":"positive regulation of Rac GTPase activity","type":"narrow"},{"name":"positive regulation of Ral GTPase activity","type":"narrow"},{"name":"positive regulation of Ran GTPase activity","type":"narrow"},{"name":"positive regulation of Rap GTPase activity","type":"narrow"},{"name":"positive regulation of Ras GTPase activity","type":"narrow"},{"name":"positive regulation of Rho GTPase activity","type":"narrow"},{"name":"stimulation of ARF GTPase activity","type":"narrow"},{"name":"stimulation of Cdc42 GTPase activity","type":"narrow"},{"name":"stimulation of GTPase activity","type":"narrow"},{"name":"stimulation of Rab GTPase activity","type":"narrow"},{"name":"stimulation of Rac GTPase activity","type":"narrow"},{"name":"stimulation of Ral GTPase activity","type":"narrow"},{"name":"stimulation of Ran GTPase activity","type":"narrow"},{"name":"stimulation of Rap GTPase activity","type":"narrow"},{"name":"stimulation of Ras GTPase activity","type":"narrow"},{"name":"stimulation of Rho GTPase activity","type":"narrow"},{"name":"up regulation of ARF GTPase activity","type":"narrow"},{"name":"up regulation of Cdc42 GTPase activity","type":"narrow"},{"name":"up regulation of GTPase activity","type":"exact"},{"name":"up regulation of Rab GTPase activity","type":"narrow"},{"name":"up regulation of Rac GTPase activity","type":"narrow"},{"name":"up regulation of Ral GTPase activity","type":"narrow"},{"name":"up regulation of Ran GTPase activity","type":"narrow"},{"name":"up regulation of Rap GTPase activity","type":"narrow"},{"name":"up regulation of Ras GTPase activity","type":"narrow"},{"name":"up regulation of Rho GTPase activity","type":"narrow"},{"name":"up-regulation of ARF GTPase activity","type":"narrow"},{"name":"up-regulation of Cdc42 GTPase activity","type":"narrow"},{"name":"up-regulation of GTPase activity","type":"exact"},{"name":"up-regulation of Rab GTPase activity","type":"narrow"},{"name":"up-regulation of Rac GTPase activity","type":"narrow"},{"name":"up-regulation of Ral GTPase activity","type":"narrow"},{"name":"up-regulation of Ran GTPase activity","type":"narrow"},{"name":"up-regulation of Rap GTPase activity","type":"narrow"},{"name":"up-regulation of Ras GTPase activity","type":"narrow"},{"name":"up-regulation of Rho GTPase activity","type":"narrow"},{"name":"upregulation of ARF GTPase activity","type":"narrow"},{"name":"upregulation of Cdc42 GTPase activity","type":"narrow"},{"name":"upregulation of GTPase activity","type":"exact"},{"name":"upregulation of Rab GTPase activity","type":"narrow"},{"name":"upregulation of Rac GTPase activity","type":"narrow"},{"name":"upregulation of Ral GTPase activity","type":"narrow"},{"name":"upregulation of Ran GTPase activity","type":"narrow"},{"name":"upregulation of Rap GTPase activity","type":"narrow"},{"name":"upregulation of Ras GTPase activity","type":"narrow"},{"name":"upregulation of Rho GTPase activity","type":"narrow"}],"termid":"GO:0043547"}


id: FYPO:0000125
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of amiloride than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0001985","FYPO:0005447","FYPO:0002682"],"is_obsolete":false,"name":"resistance to amiloride","synonyms":[{"name":"resistance to amiloride during mitotic cell cycle","type":"related"},{"name":"resistance to amiloride during vegetative growth","type":"exact"},{"name":"resistant to amiloride","type":"exact"}],"termid":"FYPO:0000125"}


id: PBO:0040227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"activating transcription factor 3","termid":"PBO:0040227"}


id: PBO:0061234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOP14 nucleolar protein","termid":"PBO:0061234"}


id: PBO:0043588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COL18A1 antisense RNA 2","termid":"PBO:0043588"}


id: GO:0009897
data:
  {"annotated_genes":["SJAG_02916","SJAG_04685","SJAG_05272","SJAG_00784","SJAG_00340","SJAG_04789","SJAG_04209","SJAG_04238","SJAG_03204","SJAG_00415","SJAG_01086","SJAG_02093","SJAG_01835","SJAG_00109","SJAG_02260","SJAG_00096","SJAG_00310","SJAG_00254","SJAG_02173","SJAG_03640","SJAG_02435","SJAG_01029","SJAG_04850","SJAG_04875","SJAG_04851","SJAG_01290"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[86077,86270,87714,88011,90187,90975,90987,90988,90989,91415,96944,98378,98385,98386,100133,102679,103905,109169,109873,110503,110603,110882,111721,112404,113458,113889,114438,114871],"is_not":false,"summary":null,"term":"GO:0009897"}]},"cv_name":"cellular_component","definition":"The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.","definition_xrefs":["GOC:dos","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"side of membrane","termid":"GO:0098552"},{"relation_name":"part_of","term_name":"plasma membrane","termid":"GO:0005886"},{"relation_name":"part_of","term_name":"cell surface","termid":"GO:0009986"}],"gene_count":26,"genes_by_uniquename":{"SJAG_00096":null,"SJAG_00109":null,"SJAG_00254":null,"SJAG_00310":null,"SJAG_00340":null,"SJAG_00415":null,"SJAG_00784":null,"SJAG_01029":null,"SJAG_01086":null,"SJAG_01290":null,"SJAG_01835":null,"SJAG_02093":null,"SJAG_02173":null,"SJAG_02260":null,"SJAG_02435":null,"SJAG_02916":null,"SJAG_03204":null,"SJAG_03640":null,"SJAG_04209":null,"SJAG_04238":null,"SJAG_04685":null,"SJAG_04789":null,"SJAG_04850":null,"SJAG_04851":null,"SJAG_04875":null,"SJAG_05272":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0009986"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0009986","GO:0005575","GO:0005886"],"is_obsolete":false,"name":"external side of plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"external leaflet of plasma membrane","type":"exact"},{"name":"juxtamembrane","type":"broad"},{"name":"outer surface of cytoplasmic membrane","type":"exact"}],"termid":"GO:0009897","terms_by_termid":{"GO:0009897":null}}


id: MOD:00815
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because redundant with MOD:00151. Remap to MOD:00151.","definition_xrefs":["PubMed:7878465","PubMed:14527393","PubMed:9428520"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00815 molybdopterin (obsolete MOD:00815)","termid":"MOD:00815"}


id: PBO:0086789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; predicted to be palmitoylated","termid":"PBO:0086789"}


id: GO:0052352
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism in its symbiont resulting in the formation of substances. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete biosynthesis by host of substance in symbiont (obsolete GO:0052352)","termid":"GO:0052352"}


id: PBO:0049654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H4 clustered histone 8","termid":"PBO:0049654"}


id: GO:0031659
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity contributing to the G1/S transition of the cell cycle.","definition_xrefs":["GOC:tb","GOC:dph","GOC:mah","GOC:pr"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle (obsolete GO:0031659)","synonyms":[{"name":"G1/S-specific activation of cyclin-dependent protein kinase activity","type":"narrow"},{"name":"G1/S-specific positive regulation of cyclin-dependent protein kinase activity","type":"exact"},{"name":"G1/S-specific stimulation of cyclin-dependent protein kinase activity","type":"narrow"},{"name":"G1/S-specific up regulation of cyclin-dependent protein kinase activity","type":"exact"},{"name":"G1/S-specific up-regulation of cyclin-dependent protein kinase activity","type":"exact"},{"name":"G1/S-specific upregulation of cyclin-dependent protein kinase activity","type":"exact"},{"name":"positive regulation of cyclin-dependent protein kinase activity during G1/S","type":"related"},{"name":"positive regulation of cyclin-dependent protein kinase activity involved in G1/S","type":"broad"}],"termid":"GO:0031659"}


id: FYPO:0007912
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial localization is normal.","definition_xrefs":["PMID:10641037","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal organelle localization","termid":"FYPO:0007913"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001320","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal mitochondrial distribution","synonyms":[{"name":"normal mitochondrial localization","type":"exact"}],"termid":"FYPO:0007912"}


id: SO:0001387
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A post translationally modified alanine amino acid feature.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified_amino_acid_feature","termid":"SO:0001385"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified_L_alanine","secondary_identifiers":["MOD:00901"],"synonyms":[{"name":"ModAla","type":"exact"},{"name":"modified L alanine","type":"exact"},{"name":"modified L-alanine","type":"exact"}],"termid":"SO:0001387"}


id: GO:0046153
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of ommochromes, any of a large group of natural polycyclic pigments commonly found in the Arthropoda, particularly in the ommatidia of the compound eye.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"eye pigment catabolic process","termid":"GO:0046151"},{"relation_name":"is_a","term_name":"ommochrome metabolic process","termid":"GO:0046152"},{"relation_name":"is_a","term_name":"ocellus pigment catabolic process","termid":"GO:0046159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"ommochrome catabolic process","synonyms":[{"name":"ommochrome breakdown","type":"exact"},{"name":"ommochrome catabolism","type":"exact"},{"name":"ommochrome degradation","type":"exact"}],"termid":"GO:0046153"}


id: FYPO:0005650
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which premeiotic DNA replication begins at the normal (i.e. indistinguishable from wild type) time relative to other cell cycle events.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal premeiotic DNA replication","termid":"FYPO:0002043"},{"relation_name":"is_a","term_name":"normal cellular process during meiotic cell cycle","termid":"FYPO:0007277"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal onset of premeiotic DNA replication","synonyms":[{"name":"normal timing of premeiotic DNA replication","type":"related"}],"termid":"FYPO:0005650"}


id: PBO:0059163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mercaptopyruvate sulfurtransferase","termid":"PBO:0059163"}


id: PR:O14162
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rog1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14162"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lipase C4A8.10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4A8.10","synonyms":[{"name":"Spom972h-rog1","type":"exact"}],"termid":"PR:O14162"}


id: GO:0003254
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of membrane depolarization. Membrane depolarization is the process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane potential","termid":"GO:0042391"},{"relation_name":"is_a","term_name":"regulation of cellular process","termid":"GO:0050794"},{"relation_name":"regulates","term_name":"membrane depolarization","termid":"GO:0051899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of membrane depolarization","termid":"GO:0003254"}


id: PBO:0058798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7704","termid":"PBO:0058798"}


id: GO:0039516
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a virus effects a change in host enzyme activity.","definition_xrefs":["GOC:bf","GOC:sp"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by virus of host catalytic activity (obsolete GO:0039516)","synonyms":[{"name":"modulation of catalytic activity of host by virus","type":"exact"},{"name":"regulation by virus of host catalytic activity","type":"exact"},{"name":"regulation of host catalytic activity by virus","type":"exact"}],"termid":"GO:0039516"}


id: PBO:0026747
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_degradation_during_mitotic_S_phase","termid":"PBO:0026747"}


id: GO:0090603
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whereby a relatively unspecialized cell acquires specialized features of a sieve element.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sieve element differentiation","termid":"GO:0090603"}


id: PATO:0001045
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001045 relative power (obsolete PATO:0001045)","termid":"PATO:0001045"}


id: PBO:0050716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family D (Hsp60) member 1 pseudogene 2","termid":"PBO:0050716"}


id: GO:0005355
data:
  {"annotated_genes":["SJAG_03608"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110308],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140108"},{"annotations":[113332],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005358"}]},"cv_name":"molecular_function","definition":"Enables the transfer of the hexose monosaccharide glucose from one side of a membrane to the other.","definition_xrefs":["ISBN:0815340729","GOC:ai","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-glucose transmembrane transporter activity","termid":"GO:0055056"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03608":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"glucose transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-5653873","Reactome:R-HSA-499981","GO:0015579"],"synonyms":[{"name":"galactose/glucose (methylgalactoside) porter activity","type":"related"},{"name":"glucose permease activity","type":"exact"},{"name":"lactose/glucose efflux transporter activity","type":"narrow"}],"termid":"GO:0005355","terms_by_termid":{"GO:0005358":null,"GO:0140108":null}}


id: FYPO:0004471
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein that is not normally found in the nucleolus is observed there during telophase of mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein mislocalized to nucleus during vegetative growth","termid":"FYPO:0000784"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"protein mislocalized to nucleolus during mitotic telophase","synonyms":[{"name":"ectopic protein localization to nucleolus during mitotic telophase","type":"exact"},{"name":"protein mislocalised to nucleolus during mitotic telophase","type":"exact"},{"name":"protein mislocalised to nucleolus during telophase during vegetative growth","type":"exact"},{"name":"protein mislocalized to nucleolus during mitotic telophase during vegetative growth","type":"exact"},{"name":"protein mislocalized to nucleolus during telophase of mitosis","type":"exact"}],"termid":"FYPO:0004471"}


id: GO:0015535
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: fucose(out) + H+(out) = fucose(in) + H+(in).","definition_xrefs":["TC:2.A.1.7.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose:proton symporter activity","termid":"GO:0009679"},{"relation_name":"is_a","term_name":"fucose transmembrane transporter activity","termid":"GO:0015150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"fucose:proton symporter activity","secondary_identifiers":["RHEA:29023","MetaCyc:TRANS-RXN-20"],"synonyms":[{"name":"fucose:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015535"}


id: GO:0035268
data:
  {"annotated_genes":["SJAG_01264"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102078],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035269"}]},"cv_name":"biological_process","definition":"The addition of a mannose residue to a protein acceptor molecule.","definition_xrefs":["GOC:pr","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein glycosylation","termid":"GO:0006486"},{"relation_name":"is_a","term_name":"mannosylation","termid":"GO:0097502"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01264":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006486"}],"interesting_parent_ids":["GO:0008150","GO:0006486"],"is_obsolete":false,"name":"protein mannosylation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"protein amino acid mannosylation","type":"exact"}],"termid":"GO:0035268","terms_by_termid":{"GO:0035269":null}}


id: GO:0097401
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acidification of the synaptic vesicle lumen via transport of protons into the vesicle. The resulting electrochemical gradient powers neurotransmitter loading.","definition_xrefs":["GOC:dsf","PMID:22875945","PMID:21172605"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of localization in cell","termid":"GO:0051649"},{"relation_name":"is_a","term_name":"neuron cellular homeostasis","termid":"GO:0070050"},{"relation_name":"is_a","term_name":"proton transmembrane transport","termid":"GO:1902600"},{"relation_name":"part_of","term_name":"synaptic vesicle maturation","termid":"GO:0016188"},{"relation_name":"part_of","term_name":"synaptic vesicle cycle","termid":"GO:0099504"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016192","GO:0055085","GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"synaptic vesicle lumen acidification","synonyms":[{"name":"synaptic vesicle lumen pH reduction","type":"exact"},{"name":"synaptic vesicle proton loading","type":"exact"}],"termid":"GO:0097401"}


id: GO:0042324
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an orexin receptor.","definition_xrefs":["GOC:ceb","PMID:11988773"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor binding","termid":"GO:0071855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"orexin receptor binding","synonyms":[{"name":"hypocretin receptor binding","type":"exact"},{"name":"hypocretin receptor ligand","type":"narrow"},{"name":"orexin receptor ligand","type":"narrow"}],"termid":"GO:0042324"}


id: PBO:0039808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor 4","termid":"PBO:0039808"}


id: PBO:0044594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDB1 and CUL4 associated factor 4","termid":"PBO:0044594"}


id: PBO:0052900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 10-11","termid":"PBO:0052900"}


id: PATO:0002342
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's being a cupule, with a structure similar to a cup that also encloses the ovule in partiality.","definition_xrefs":["PATOC:DD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cup-shaped","termid":"PATO:0002227"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cupulate","termid":"PATO:0002342"}


id: PBO:0113011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Atypical protein kinase; along with its paralog, ALK1, required for proper spindle positioning and nuclear segregation following mitotic arrest, proper organization of formins and polarisome components in mitosis, and survival after spindle assembly checkpoint delay; negatively regulates the morphogenesis checkpoint in response to polarity insults in opposition to ALK1; phosphorylated in response to DNA damage; similar to mammalian haspins","termid":"PBO:0113011"}


id: PBO:0076629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBK1 binding protein 1","termid":"PBO:0076629"}


id: PBO:0085982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; relocalizes from vacuole to cytoplasm upon DNA replication stress","termid":"PBO:0085982"}


id: GO:0044262
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular carbohydrate metabolic process (obsolete GO:0044262)","synonyms":[{"name":"cellular carbohydrate metabolism","type":"exact"},{"name":"main pathways of carbohydrate metabolic process","type":"narrow"},{"name":"main pathways of carbohydrate metabolism","type":"narrow"}],"termid":"GO:0044262"}


id: GO:2000995
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of mannan catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellodextrin metabolic process","termid":"GO:2000925"},{"relation_name":"is_a","term_name":"negative regulation of cell wall polysaccharide catabolic process","termid":"GO:2000967"},{"relation_name":"is_a","term_name":"regulation of mannan catabolic process","termid":"GO:2000994"},{"relation_name":"negatively_regulates","term_name":"mannan catabolic process","termid":"GO:0046355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"negative regulation of mannan catabolic process","synonyms":[{"name":"negative regulation of mannan breakdown","type":"exact"},{"name":"negative regulation of mannan catabolism","type":"exact"},{"name":"negative regulation of mannan degradation","type":"exact"}],"termid":"GO:2000995"}


id: PBO:0045375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichyl-phosphate mannosyltransferase subunit 1, catalytic","termid":"PBO:0045375"}


id: PBO:0050872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IDH2 divergent transcript","termid":"PBO:0050872"}


id: PBO:0086087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein packaged into COPII vesicles for ER to Golgi trafficking; forms a complex with Emp47p that may function in trafficking plasma membrane glycoproteins through early secretory pathway; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern","termid":"PBO:0086087"}


id: FYPO:0007642
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the dimethylation of lysine at position 9 of histone H3 occurs to a lower extent than normal at ribosomal DNA during G0 phase.","definition_xrefs":["PMID:27738016","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone H3-K9 methylation during G0","termid":"FYPO:0007641"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0005447","FYPO:0002494","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased histone H3-K9 dimethylation at rDNA during G0","synonyms":[{"name":"decreased histone H3 K9 dimethylation at rDNA during G0","type":"exact"},{"name":"decreased histone H3-K9 dimethylation at rDNA during cell quiescence","type":"exact"},{"name":"decreased histone H3-K9 dimethylation at rDNA during quiescence","type":"exact"},{"name":"decreased histone H3-K9 dimethylation at ribosomal DNA during G0","type":"exact"},{"name":"decreased histone H3K9 dimethylation at rDNA during G0","type":"exact"},{"name":"decreased histone H3K9me2 dimethylation at rDNA during G0","type":"exact"},{"name":"reduced histone H3-K9 dimethylation at rDNA during G0","type":"exact"}],"termid":"FYPO:0007642"}


id: PBO:0043106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome transmission fidelity factor 8","termid":"PBO:0043106"}


id: PBO:0049999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone cell cycle regulator","termid":"PBO:0049999"}


id: PBO:0027963
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_glutathione_level_during_nitrogen_starvation","termid":"PBO:0027963"}


id: GO:0047335
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: long-chain-polyphosphate + 3-phospho-D-glyceroyl-phosphate = long-chain-polyphosphate + 3-phosphoglycerate.","definition_xrefs":["MetaCyc:2.7.4.17-RXN","EC:2.7.4.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, phosphate group as acceptor","termid":"GO:0016776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"3-phosphoglyceroyl-phosphate-polyphosphate phosphotransferase activity","secondary_identifiers":["RHEA:18665"],"synonyms":[{"name":"1,3-diphosphoglycerate-polyphosphate phosphotransferase activity","type":"related"},{"name":"3-phospho-D-glyceroyl-phosphate:polyphosphate phosphotransferase activity","type":"related"},{"name":"diphosphoglycerate-polyphosphate phosphotransferase activity","type":"related"}],"termid":"GO:0047335"}


id: GO:0033532
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of stachyose, the tetrasaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"raffinose family oligosaccharide biosynthetic process","termid":"GO:0010325"},{"relation_name":"is_a","term_name":"stachyose metabolic process","termid":"GO:0033531"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"stachyose biosynthetic process","secondary_identifiers":["MetaCyc:PWY-5337"],"synonyms":[{"name":"stachyose anabolism","type":"exact"},{"name":"stachyose biosynthesis","type":"exact"},{"name":"stachyose formation","type":"exact"},{"name":"stachyose synthesis","type":"exact"}],"termid":"GO:0033532"}


id: GO:0072565
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cellular component organization process in which microparticles bud off from an endothelial cell.","definition_xrefs":["PMID:16373184","GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"blood microparticle formation","termid":"GO:0072564"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endothelial microparticle formation","synonyms":[{"name":"endothelial microparticle generation","type":"exact"},{"name":"endothelial microparticle release","type":"exact"}],"termid":"GO:0072565"}


id: GO:0102599
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-amyrin + O2 + H+ + NAD(P)H = 12,13beta-epoxy-beta-amyrin + H2O + NAD(P).","definition_xrefs":["EC:1.14.13.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"cytochrome P450 dependent beta-amyrin 12,13beta-epoxidase activity","secondary_identifiers":["MetaCyc:RXN-15383"],"termid":"GO:0102599"}


id: PBO:0069882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1170, pseudogene","termid":"PBO:0069882"}


id: PBO:0073785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 5 member 5","termid":"PBO:0073785"}


id: PBO:0000348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ctf18 RFC-like complex subunit Dcc1","termid":"PBO:0000348"}


id: GO:0097262
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: eoxin C4 = eoxin D4 + 5-L-glutamyl amino acid.","definition_xrefs":["GOC:mw","PMID:18647347","PMID:18184802"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyltransferase activity","termid":"GO:0016755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016746","GO:0003674"],"is_obsolete":false,"name":"eoxin D4 synthase activity","secondary_identifiers":["Reactome:R-HSA-2161945"],"termid":"GO:0097262"}


id: PBO:0084874
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosomal protein of the small subunit; MRP1 exhibits genetic interactions with PET122, encoding a COX3-specific translational activator, and with PET123, encoding a small subunit mitochondrial ribosomal protein","termid":"PBO:0084874"}


id: GO:0038091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by vascular endothelial growth factor (VEGF) binding to a platelet-derived growth factor receptor (PDGFR) on the surface of a cell, which activates or increases the frequency, rate or extent of cell proliferation.","definition_xrefs":["GOC:signaling","PMID:17470632"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"is_a","term_name":"VEGF-activated platelet-derived growth factor receptor signaling pathway","termid":"GO:0038086"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signaling pathway","synonyms":[{"name":"VEGF-A-induced cell proliferation","type":"narrow"},{"name":"positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signalling pathway","type":"exact"},{"name":"positive regulation of cell proliferation by VEGF/PDGFR signaling pathway","type":"exact"}],"termid":"GO:0038091"}


id: PBO:0088542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Sec22","termid":"PBO:0088542"}


id: GO:1900144
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of BMP secretion.","definition_xrefs":["GOC:sart","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell communication","termid":"GO:0010647"},{"relation_name":"is_a","term_name":"positive regulation of signaling","termid":"GO:0023056"},{"relation_name":"is_a","term_name":"positive regulation of protein secretion","termid":"GO:0050714"},{"relation_name":"is_a","term_name":"regulation of BMP secretion","termid":"GO:2001284"},{"relation_name":"positively_regulates","term_name":"BMP secretion","termid":"GO:0038055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of BMP secretion","synonyms":[{"name":"activation of BMP protein secretion","type":"narrow"},{"name":"activation of BMP secretion","type":"narrow"},{"name":"activation of bone morphogenetic protein secretion","type":"narrow"},{"name":"positive regulation of BMP protein secretion","type":"exact"},{"name":"positive regulation of bone morphogenetic protein secretion","type":"exact"},{"name":"up regulation of BMP protein secretion","type":"exact"},{"name":"up regulation of BMP secretion","type":"exact"},{"name":"up regulation of bone morphogenetic protein secretion","type":"exact"},{"name":"up-regulation of BMP protein secretion","type":"exact"},{"name":"up-regulation of BMP secretion","type":"exact"},{"name":"up-regulation of bone morphogenetic protein secretion","type":"exact"},{"name":"upregulation of BMP protein secretion","type":"exact"},{"name":"upregulation of BMP secretion","type":"exact"},{"name":"upregulation of bone morphogenetic protein secretion","type":"exact"}],"termid":"GO:1900144"}


id: PBO:0046652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"esterase activator","termid":"PBO:0046652"}


id: PBO:0042233
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin Y like 5 (pseudogene)","termid":"PBO:0042233"}


id: PBO:0002759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor, Elf1 family (predicted)","termid":"PBO:0002759"}


id: PBO:0039120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AIDA pseudogene 3","termid":"PBO:0039120"}


id: PBO:0040651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BBSome interacting protein 1","termid":"PBO:0040651"}


id: GO:0060810
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which mRNA is transported to, or maintained in, a specific location within an oocyte that results in a pattern being established in the embryo.","definition_xrefs":["GOC:dph","GOC:sdb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular mRNA localization","termid":"GO:0008298"},{"relation_name":"part_of","term_name":"pattern specification process","termid":"GO:0007389"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"intracellular mRNA localization involved in pattern specification process","synonyms":[{"name":"intracellular mRNA localisation involved in pattern specification process","type":"exact"}],"termid":"GO:0060810"}


id: PBO:0010274
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oculomotor apraxia 1","termid":"PBO:0010274"}


id: PBO:0068013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 318","termid":"PBO:0068013"}


id: GO:0003102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process mediated by angiotensin that increases the rate of diuresis.","definition_xrefs":["GOC:dph","GOC:tb","GOC:mtg_cardio"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of diuresis by angiotensin (obsolete GO:0003102)","synonyms":[{"name":"angiotensin-mediated positive regulation of diuresis","type":"exact"},{"name":"positive regulation of diuresis by angiotensin","type":"exact"}],"termid":"GO:0003102"}


id: PBO:0068676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 57, pseudogene","termid":"PBO:0068676"}


id: FYPO:0004079
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which phosphorylation of serine at position 10 of histone H3 is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone phosphorylation during vegetative growth","termid":"FYPO:0002595"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal histone H3-S10 phosphorylation during vegetative growth","synonyms":[{"name":"normal histone H3 phosphorylation at S10 during vegetative growth","type":"exact"},{"name":"normal histone H3-S10 phosphorylation during mitotic cell cycle","type":"related"},{"name":"normal histone H3S10 phosphorylation during vegetative growth","type":"exact"}],"termid":"FYPO:0004079"}


id: PBO:0079480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taxilin beta","termid":"PBO:0079480"}


id: GO:0043672
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The inner, non-sculptured part of the exine which lies below the sexine.","definition_xrefs":["PMID:5722147"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"exine","termid":"GO:0043668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"nexine","termid":"GO:0043672"}


id: GO:0032384
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of cholesterol within cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cholesterol transport","termid":"GO:0032375"},{"relation_name":"is_a","term_name":"negative regulation of intracellular sterol transport","termid":"GO:0032381"},{"relation_name":"is_a","term_name":"regulation of intracellular cholesterol transport","termid":"GO:0032383"},{"relation_name":"negatively_regulates","term_name":"intracellular cholesterol transport","termid":"GO:0032367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of intracellular cholesterol transport","synonyms":[{"name":"down regulation of intracellular cholesterol transport","type":"exact"},{"name":"down-regulation of intracellular cholesterol transport","type":"exact"},{"name":"downregulation of intracellular cholesterol transport","type":"exact"},{"name":"inhibition of intracellular cholesterol transport","type":"narrow"}],"termid":"GO:0032384"}


id: PATO:0000293
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000293 absolute activity value (obsolete PATO:0000293)","termid":"PATO:0000293"}


id: PBO:0052493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLHL6 antisense RNA 1","termid":"PBO:0052493"}


id: PBO:0073105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sidekick cell adhesion molecule 1","termid":"PBO:0073105"}


id: PBO:0040613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAR/IMD domain containing adaptor protein 2 like 2","termid":"PBO:0040613"}


id: PBO:0048101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FTO intronic transcript 1","termid":"PBO:0048101"}


id: PBO:0001128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanosine-diphosphatase Gda1","termid":"PBO:0001128"}


id: GO:0033082
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of extrathymic T cell differentiation.","definition_xrefs":["GOC:add","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T cell differentiation","termid":"GO:0045580"},{"relation_name":"regulates","term_name":"extrathymic T cell differentiation","termid":"GO:0033078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of extrathymic T cell differentiation","synonyms":[{"name":"regulation of extrathymic T cell development","type":"related"}],"termid":"GO:0033082"}


id: GO:0018774
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,6-dioxo-6-phenylhexa-3-enoate + H2O = benzoate + 2-oxopent-4-enoate.","definition_xrefs":["EC:3.7.1.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances","termid":"GO:0016823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"2,6-dioxo-6-phenylhexa-3-enoate hydrolase activity","secondary_identifiers":["UM-BBD_enzymeID:e0033","MetaCyc:3.7.1.8-RXN","RHEA:17161"],"synonyms":[{"name":"2,6-dioxo-6-phenylhexa-3-enoate benzoylhydrolase activity","type":"related"},{"name":"2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase activity","type":"exact"},{"name":"HOHPDA hydrolase activity","type":"related"}],"termid":"GO:0018774"}


id: FYPO:0005109
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at replication origins begins earlier than normal.","definition_xrefs":["PomBase:mah","PMID:21518960"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to chromatin during vegetative growth","termid":"FYPO:0000452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"premature protein localization to chromatin at replication origin","synonyms":[{"name":"advanced protein localization to chromatin at replication origin","type":"exact"},{"name":"premature protein localisation to chromatin at replication origin","type":"exact"},{"name":"premature protein localization to chromatin at replication origins during mitotic cell cycle","type":"related"},{"name":"premature protein localization to chromatin at replication origins during vegetative growth","type":"exact"}],"termid":"FYPO:0005109"}


id: PBO:0059513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded major H-strand promoter","termid":"PBO:0059513"}


id: GO:2000335
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of endothelial microparticle formation.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of blood microparticle formation","termid":"GO:2000332"},{"relation_name":"regulates","term_name":"endothelial microparticle formation","termid":"GO:0072565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of endothelial microparticle formation","synonyms":[{"name":"regulation of endothelial microparticle generation","type":"exact"},{"name":"regulation of endothelial microparticle release","type":"exact"}],"termid":"GO:2000335"}


id: PBO:0083104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA helicase involved in rDNA replication and Ty1 transposition; binds to and suppresses DNA damage at G4 motifs in vivo; relieves replication fork pauses at telomeric regions; structurally and functionally related to Pif1p","termid":"PBO:0083104"}


id: MOD:01383
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links two L-cysteine residues and oxidizes a sulfur to form L-cystine S-oxide.","definition_xrefs":["RESID:AA0457"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disulfide crosslinked residues","termid":"MOD:00689"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-cystine S-oxide","synonyms":[{"name":"(2R)-2-amino-3-[([(2R)-2-amino-2-carboxyethyl]sulfanyl)sulfinyl]propanoic acid","type":"exact"},{"name":"CROSSLNK S-cysteinyl 3-(oxidosulfanyl)alanine (Cys-Cys)","type":"exact"},{"name":"L-cystine S-oxide","type":"exact"},{"name":"S-[(2R)-2-amino-3-oxopropyl] (2R)-2-amino-3-oxopropane-1-sulfinothioate","type":"exact"},{"name":"S-cysteinyl 3-(oxidosulfanyl)alanine","type":"exact"},{"name":"cystine sulfoxide","type":"exact"}],"termid":"MOD:01383"}


id: PBO:0057938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR3663 host gene","termid":"PBO:0057938"}


id: GO:1903204
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of oxidative stress-induced neuron death.","definition_xrefs":["GOC:TermGenie","PMID:24252804","GO_REF:0000058","GOC:PARL","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of oxidative stress-induced neuron death (obsolete GO:1903204)","synonyms":[{"name":"down regulation of neuron death in response to oxidative stress","type":"exact"},{"name":"down regulation of neuronal cell death in response to oxidative stress","type":"exact"},{"name":"down regulation of oxidative stress-induced neuron death","type":"exact"},{"name":"down-regulation of neuron death in response to oxidative stress","type":"exact"},{"name":"down-regulation of neuronal cell death in response to oxidative stress","type":"exact"},{"name":"down-regulation of oxidative stress-induced neuron death","type":"exact"},{"name":"downregulation of neuron death in response to oxidative stress","type":"exact"},{"name":"downregulation of neuronal cell death in response to oxidative stress","type":"exact"},{"name":"downregulation of oxidative stress-induced neuron death","type":"exact"},{"name":"inhibition of neuron death in response to oxidative stress","type":"narrow"},{"name":"inhibition of neuronal cell death in response to oxidative stress","type":"narrow"},{"name":"inhibition of oxidative stress-induced neuron death","type":"narrow"},{"name":"negative regulation of neuronal cell death in response to oxidative stress","type":"exact"},{"name":"neuronal protection under oxidative stress","type":"related"},{"name":"neuroprotection against oxidative stress","type":"related"}],"termid":"GO:1903204"}


id: PBO:0068994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 238, pseudogene","termid":"PBO:0068994"}


id: PBO:0065373
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pregnancy specific beta-1-glycoprotein 1","termid":"PBO:0065373"}


id: PBO:0030754
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_glutamate_dehydrogenase_(NADP+)_activity","termid":"PBO:0030754"}


id: GO:2000947
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of amylopectin catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of starch catabolic process","termid":"GO:2000883"},{"relation_name":"is_a","term_name":"positive regulation of amylopectin metabolic process","termid":"GO:2000944"},{"relation_name":"is_a","term_name":"regulation of amylopectin catabolic process","termid":"GO:2000945"},{"relation_name":"positively_regulates","term_name":"amylopectin catabolic process","termid":"GO:2000897"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"positively_regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"positive regulation of amylopectin catabolic process","synonyms":[{"name":"positive regulation of Amylopectin catabolism","type":"exact"}],"termid":"GO:2000947"}


id: PBO:0067104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 146, pseudogene","termid":"PBO:0067104"}


id: GO:0007139
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle phase which follows anaphase II of meiosis and during which the chromosomes arrive at the poles of the cell and the division of the cytoplasm starts.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telophase","termid":"GO:0051326"},{"relation_name":"is_a","term_name":"meiosis II cell cycle phase","termid":"GO:0098765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"meiotic telophase II","termid":"GO:0007139"}


id: PBO:0041152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic transcription factor 3 pseudogene 7","termid":"PBO:0041152"}


id: FYPO:0000167
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the frequency of DNA recombination at replication fork barriers is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA recombination during vegetative growth","termid":"FYPO:0001345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000293","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"increased DNA recombination at mitotic DNA replication fork barriers","synonyms":[{"name":"DNA recombination defect, at mitotic DNA replication fork barriers, elevated","type":"exact"},{"name":"increased DNA recombination at mitotic DNA replication fork barriers during mitotic cell cycle","type":"related"},{"name":"increased DNA recombination at mitotic DNA replication fork barriers during vegetative growth","type":"exact"},{"name":"increased recombination at mitotic DNA replication fork barriers","type":"exact"}],"termid":"FYPO:0000167"}


id: FYPO:0007408
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin is abnormal at sites encoding polyadenylation signals.","definition_xrefs":["PMID:32499400","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to chromatin during vegetative growth","termid":"FYPO:0000452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein localization to chromatin at polyadenylation site","synonyms":[{"name":"abnormal protein localisation to chromatin at polyadenylation site","type":"exact"},{"name":"abnormal protein localization to chromatin at poly(A) site","type":"exact"},{"name":"abnormal protein localization to chromatin at polyadenylation site during mitotic cell cycle","type":"related"},{"name":"abnormal protein localization to chromatin at polyadenylation site during vegetative growth","type":"exact"}],"termid":"FYPO:0007408"}


id: GO:0061590
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of a population of phosphatidylcholine molecules from one leaflet of the plasma membrane bilayer to the opposite leaflet as a result of a calcium stimulus.","definition_xrefs":["PMID:23532839","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium activated phospholipid scrambling","termid":"GO:0061588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179","GO:0061024"],"is_obsolete":false,"name":"calcium activated phosphatidylcholine scrambling","termid":"GO:0061590"}


id: PBO:0015691
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Homologue of Parp Zinc finger","termid":"PBO:0015691"}


id: GO:0044664
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The cellular process of the reversion of cells to their original cell type, occurring as part of the process of phenotypic switching. Phenotypic switching begins with changes in cell morphology and altered gene expression patterns and ends when the morphology of a population of cells has reverted back to the default state, accompanied by altered expression patterns.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete reversion of cell type to default state involved in phenotypic switching (obsolete GO:0044664)","termid":"GO:0044664"}


id: SO:0001741
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene segment which when incorporated by somatic recombination in the final gene transcript results in a nonfunctional product.","definition_xrefs":["SO:hd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene_segment","termid":"SO:3000000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogenic_gene_segment","synonyms":[{"name":"pseudogenic gene segment","type":"exact"}],"termid":"SO:0001741"}


id: PBO:0052369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member 17","termid":"PBO:0052369"}


id: PBO:0091070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit Mrp49","termid":"PBO:0091070"}


id: GO:0102281
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: formylaminopyrimidine + H2O = 4-amino-5-ammoniomethyl-2-methylpyrimidine + formate.","definition_xrefs":["GOC:pz","EC:3.5.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0016810","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"formylaminopyrimidine deformylase activity","secondary_identifiers":["MetaCyc:RXN-12612"],"termid":"GO:0102281"}


id: GO:1901482
data:
  {"annotated_genes":["SJAG_04725","SJAG_03256"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98939,99975],"is_not":false,"summary":null,"term":"GO:1901482"}]},"cv_name":"biological_process","definition":"A L-lysine import into the vacuole that is involved in cellular response to nitrogen starvation.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-lysine transmembrane import into vacuole","termid":"GO:0090517"},{"relation_name":"part_of","term_name":"cellular response to nitrogen starvation","termid":"GO:0006995"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03256":null,"SJAG_04725":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"L-lysine import into vacuole involved in cellular response to nitrogen starvation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1901482","terms_by_termid":{"GO:1901482":null}}


id: GO:0050008
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: isopiperitenone = piperitenone.","definition_xrefs":["RHEA:21516"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, transposing C=C bonds","termid":"GO:0016863"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"isopiperitenone delta-isomerase activity","secondary_identifiers":["MetaCyc:ISOPIPERITENONE-DELTA-ISOMERASE-RXN","EC:5.3.3.11","KEGG_REACTION:R03782"],"synonyms":[{"name":"isopiperitenone D-isomerase activity","type":"exact"},{"name":"isopiperitenone delta8-delta4-isomerase activity","type":"related"}],"termid":"GO:0050008"}


id: PBO:0005573
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Extragenic suppressor of KinetoChore","termid":"PBO:0005573"}


id: PBO:0089275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6-phosphogluconolactonase Pgk1","termid":"PBO:0089275"}


id: PBO:0084333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kinesin-related antiparallel sliding motor protein; involved in mitotic spindle positioning; sliding activity promotes bipolar spindle assembly and maintenance of genome stability; inhibits spindle elongation, destabilizing late anaphase spindle microtubules that polymerize beyond the midzone","termid":"PBO:0084333"}


id: PBO:0028424
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_actomyosin_contractile_ring,_with_protein_mislocalized_to_cytoplasm","termid":"PBO:0028424"}


id: GO:0050594
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + NADPH + O2 + tabersonine = 16-hydroxytabersonine + H2O + NADP+.","definition_xrefs":["RHEA:14133","EC:1.14.14.103"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"tabersonine 16-hydroxylase activity","secondary_identifiers":["MetaCyc:1.14.13.73-RXN","KEGG_REACTION:R05855"],"synonyms":[{"name":"tabersonine,NADPH:oxygen oxidoreductase (16-hydroxylating)","type":"related"}],"termid":"GO:0050594"}


id: PBO:0040274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atonal bHLH transcription factor 8","termid":"PBO:0040274"}


id: GO:0006838
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete allantoin/allantoate transport (obsolete GO:0006838)","synonyms":[{"name":"allantoin/allantoate transport","type":"exact"}],"termid":"GO:0006838"}


id: GO:0046739
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The transport of a virus between cells in a multicellular organism. The cells can be adjacent or spatially separated (e.g. in different tissues or organs).","definition_xrefs":["GOC:bf","GOC:jl","ISBN:0781718325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"migration in host","termid":"GO:0044001"},{"relation_name":"is_a","term_name":"transport of virus","termid":"GO:0046794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"transport of virus in multicellular host","synonyms":[{"name":"spread of virus in multicellular host","type":"related"},{"name":"spread of virus within multicellular host","type":"exact"},{"name":"viral spread within multicellular host","type":"exact"}],"termid":"GO:0046739"}


id: PBO:0027955
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_pyridoxamine-phosphate_oxidase_activity","termid":"PBO:0027955"}


id: GO:1990859
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an endothelin stimulus. Endothelin is any of three secretory vasoconstrictive peptides (endothelin-1, -2, -3).","definition_xrefs":["PMID:16365184"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to peptide hormone stimulus","termid":"GO:0071375"},{"relation_name":"is_a","term_name":"response to endothelin","termid":"GO:1990839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to endothelin","termid":"GO:1990859"}


id: GO:0035592
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a protein to a specific location within the extracellular region.","definition_xrefs":["GOC:BHF","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of protein localization","termid":"GO:0045184"},{"relation_name":"is_a","term_name":"protein localization to extracellular region","termid":"GO:0071692"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"establishment of protein localization to extracellular region","synonyms":[{"name":"establishment of protein localisation in extracellular region","type":"exact"},{"name":"establishment of protein localization in extracellular region","type":"exact"}],"termid":"GO:0035592"}


id: PBO:0048318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 29","termid":"PBO:0048318"}


id: GO:1901660
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of calcium ion out of a cell or organelle.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium ion transport","termid":"GO:0006816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"calcium ion export","termid":"GO:1901660"}


id: GO:0052381
data:
  {"annotated_genes":["SJAG_01575"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[92816],"is_not":false,"summary":null,"term":"GO:0052381"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: dimethylallyl diphosphate + tRNA = diphosphate + tRNA containing 6-dimethylallyladenosine.","definition_xrefs":["EC:2.5.1.75"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01575":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140098","GO:0016740","GO:0016765","GO:0003824","GO:0140101","GO:0003674"],"is_obsolete":false,"name":"tRNA dimethylallyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:26482","Reactome:R-HSA-6784462","Reactome:R-HSA-6787567","GO:0004811","MetaCyc:RXN0-6274"],"synonyms":[{"name":"dimethylallyl-diphosphate:tRNA dimethylallyltransferase activity","type":"exact"},{"name":"tRNA isopentenyltransferase activity","type":"related"},{"name":"tRNA prenyltransferase activity","type":"broad"}],"termid":"GO:0052381","terms_by_termid":{"GO:0052381":null}}


id: FYPO:0007456
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of 3' overhang single-stranded DNA endodeoxyribonuclease activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000654","FYPO:0000661","FYPO:0000652"],"is_obsolete":false,"name":"increased 3' overhang single-stranded DNA endodeoxyribonuclease activity","termid":"FYPO:0007456"}


id: PBO:0109281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTRES1 pseudogene 2","termid":"PBO:0109281"}


id: PBO:0028377
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_xanthine_DNA_N-glycosylase_activity","termid":"PBO:0028377"}


id: PBO:0075558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm equatorial segment protein 1","termid":"PBO:0075558"}


id: PBO:0067002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 6, pseudogene","termid":"PBO:0067002"}


id: PBO:0005540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'(2'),5'-bisphosphate nucleotidase/inositol-1,4- bisphosphate 1-phosphatase","termid":"PBO:0005540"}


id: FYPO:0005690
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which equatorial microtubule organizing center (eMTOC) assembly is abnormal. eMTOC assembly is the aggregation, arrangement and bonding together of a set of components to form an equatorial microtubule organizing center.","definition_xrefs":["GO:1904185","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton organization during vegetative growth","termid":"FYPO:0001350"},{"relation_name":"is_a","term_name":"abnormal cellular component assembly during vegetative growth","termid":"FYPO:0001354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000054","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal eMTOC assembly","synonyms":[{"name":"abnormal eMTOC assembly during mitotic cell cycle","type":"related"},{"name":"abnormal eMTOC assembly during vegetative growth","type":"exact"},{"name":"abnormal eMTOC formation","type":"exact"},{"name":"abnormal equatorial microtubule organizing center assembly","type":"exact"},{"name":"abnormal equatorial microtubule organizing center formation","type":"exact"}],"termid":"FYPO:0005690"}


id: PBO:0072557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras related GTP binding B","termid":"PBO:0072557"}


id: GO:0102737
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 H+ + 4-coumaryl-CoA + H2O + 3 malonyl-CoA = 4 coenzyme A + 3 carbon dioxide + p-coumaroyltriacetate.","definition_xrefs":["EC:2.3.1.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016746"],"is_obsolete":false,"name":"p-coumaroyltriacetic acid synthase activity","secondary_identifiers":["MetaCyc:RXN-7577"],"termid":"GO:0102737"}


id: PBO:0030327
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_CDP-diacylglycerol-serine_O-phosphatidyltransferase_activity","termid":"PBO:0030327"}


id: PBO:0078949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Arg (anticodon TCT) 1-1","termid":"PBO:0078949"}


id: GO:0046692
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that contributes to the success of sperm fertilization in multiply-mated females.","definition_xrefs":["PMID:10885514"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multi-organism reproductive process","termid":"GO:0044703"},{"relation_name":"is_a","term_name":"multi-multicellular organism process","termid":"GO:0044706"},{"relation_name":"is_a","term_name":"multicellular organismal reproductive process","termid":"GO:0048609"},{"relation_name":"part_of","term_name":"insemination","termid":"GO:0007320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sperm competition","secondary_identifiers":["Wikipedia:Sperm_competition"],"termid":"GO:0046692"}


id: GO:0019552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The anaerobic chemical reactions and pathways resulting in the breakdown of glutamate, via the intermediate 2-hydroxyglutarate, yielding energy in the form of ATP.","definition_xrefs":["MetaCyc:P162-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anaerobic glutamate catabolic process","termid":"GO:0019670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0006091","GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"glutamate catabolic process via 2-hydroxyglutarate","synonyms":[{"name":"glutamate fermentation via 2-hydroxyglutarate","type":"exact"}],"termid":"GO:0019552"}


id: GO:0047449
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-dehydro-3-deoxy-L-arabinonate = 2,5-dioxopentanoate + H2O.","definition_xrefs":["EC:4.2.1.43","RHEA:17201"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2-dehydro-3-deoxy-L-arabinonate dehydratase activity","secondary_identifiers":["MetaCyc:4.2.1.43-RXN","KEGG_REACTION:R02278"],"synonyms":[{"name":"2-dehydro-3-deoxy-L-arabinonate hydro-lyase (2,5-dioxopentanoate-forming)","type":"related"},{"name":"2-dehydro-3-deoxy-L-arabinonate hydro-lyase activity","type":"related"},{"name":"2-keto-3-deoxy-L-arabinonate dehydratase activity","type":"related"}],"termid":"GO:0047449"}


id: PBO:0000624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA methyltransferase Tgs1 (predicted)","termid":"PBO:0000624"}


id: GO:1902240
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator.","definition_xrefs":["GOC:TermGenie","PMID:16571598","GOC:mtg_apoptosis","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of intrinsic apoptotic signaling pathway in response to osmotic stress","termid":"GO:1902220"},{"relation_name":"is_a","term_name":"regulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator","termid":"GO:1902238"},{"relation_name":"is_a","term_name":"positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator","termid":"GO:1902255"},{"relation_name":"positively_regulates","term_name":"intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator","termid":"GO:1990127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator","synonyms":[{"name":"activation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator","type":"narrow"},{"name":"up regulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator","type":"exact"},{"name":"up-regulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator","type":"exact"},{"name":"upregulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator","type":"exact"}],"termid":"GO:1902240"}


id: GO:0071967
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glucosyl-heptosyl2-KDO2-lipid A-phosphate + ADP-L-glycero-beta-D-manno-heptose = glucosyl-heptosyl3-KDO2-lipid A-phosphate + ADP + H+.","definition_xrefs":["MetaCyc:RXN0-5122"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipopolysaccharide heptosyltransferase activity","termid":"GO:0008920"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016757","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"lipopolysaccharide core heptosyltransferase activity","secondary_identifiers":["RHEA:29923"],"synonyms":[{"name":"LPS core heptosyltransferase activity","type":"exact"}],"termid":"GO:0071967"}


id: GO:0061090
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the rate, frequency, or extent of sequestering of zinc ion. Sequestering of zinc ion is the process of binding or confining zinc ions such that they are separated from other components of a biological system.","definition_xrefs":["GOC:BHF","GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of sequestering of zinc ion (obsolete GO:0061090)","termid":"GO:0061090"}


id: PBO:0043876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cAMP responsive element binding protein 3 like 4","termid":"PBO:0043876"}


id: FYPO:0002355
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in silent mating-type cassettes occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone H3-K9 dimethylation during vegetative growth","termid":"FYPO:0000876"},{"relation_name":"is_a","term_name":"abnormal histone methylation at silent mating-type cassette during vegetative growth","termid":"FYPO:0007373"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0002494"],"is_obsolete":false,"name":"decreased histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth","synonyms":[{"name":"decreased histone H3 K9 dimethylation at silent mating-type cassette during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 dimethylation at mating-type region heterochromatin during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 dimethylation at silent mating-type cassette during mitotic cell cycle","type":"related"},{"name":"decreased histone H3K9 dimethylation at silent mating-type cassette during vegetative growth","type":"exact"},{"name":"decreased histone H3K9me2 at silent mating-type cassette during vegetative growth","type":"exact"},{"name":"decreased histone lysine H3 K9 dimethylation at silent mating-type cassette during vegetative growth","type":"exact"},{"name":"decreased silent mating-type cassette histone H3-K9 dimethylation during vegetative growth","type":"exact"},{"name":"reduced histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth","type":"exact"}],"termid":"FYPO:0002355"}


id: PBO:0077735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNS2 antisense RNA 1","termid":"PBO:0077735"}


id: SO:0001160
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence element characteristic of some RNA polymerase II promoters, usually located between -30 and +15 relative to the TSS. Consensus sequence is KNNCAKCNCTRNY. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015) or MTE (0001162).","definition_xrefs":["PMID:12537576:16827941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"},{"relation_name":"part_of","term_name":"RNApol_II_promoter","termid":"SO:0000170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DMv3_motif","synonyms":[{"name":"DMv3","type":"exact"},{"name":"DMv3 motif","type":"exact"},{"name":"KNNCAKCNCTRNY","type":"narrow"},{"name":"directional motif v3","type":"exact"},{"name":"promoter motif 7","type":"exact"}],"termid":"SO:0001160"}


id: PBO:0072733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingosine-1-phosphate receptor 3","termid":"PBO:0072733"}


id: PR:O94712
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gid1 gene.","definition_xrefs":["UniProtKB:O94712","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1259.12c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1259.12c","synonyms":[{"name":"Spom972h-gid1","type":"exact"}],"termid":"PR:O94712"}


id: GO:1904763
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a chaperone-mediated autophagy translocation complex.","definition_xrefs":["GOC:pad","GO_REF:0000079","GOC:TermGenie","PMID:18644871","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"part_of","term_name":"chaperone-mediated autophagy","termid":"GO:0061684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044248"},{"rel_name":"part_of","termid":"GO:0006914"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0006914","GO:0065003","GO:0030163","GO:0044085"],"is_obsolete":false,"name":"chaperone-mediated autophagy translocation complex assembly","synonyms":[{"name":"CMA receptor complex assembly","type":"related"},{"name":"CMA receptor complex formation","type":"related"},{"name":"CMA translocation complex assembly","type":"exact"},{"name":"CMA translocation complex formation","type":"exact"},{"name":"chaperone-mediated autophagy receptor complex assembly","type":"related"},{"name":"chaperone-mediated autophagy receptor complex formation","type":"related"},{"name":"chaperone-mediated autophagy translocation complex formation","type":"exact"}],"termid":"GO:1904763"}


id: GO:2000872
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of progesterone secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of female gonad development","termid":"GO:2000196"},{"relation_name":"is_a","term_name":"positive regulation of steroid hormone secretion","termid":"GO:2000833"},{"relation_name":"is_a","term_name":"regulation of progesterone secretion","termid":"GO:2000870"},{"relation_name":"positively_regulates","term_name":"progesterone secretion","termid":"GO:0042701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of progesterone secretion","termid":"GO:2000872"}


id: MOD:01851
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links either two L-cysteine residues, or an L-cysteine residue and an L-serine residue by a thioether bond to form S-(2-aminovinyl)-cysteine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thioether crosslinked residues","termid":"MOD:00687"},{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-(2-aminovinyl)-cysteine","synonyms":[{"name":"2-amino-3-([2-aminoethenyl]sulfanyl)propanoic acid","type":"exact"}],"termid":"MOD:01851"}


id: PBO:0051756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol polyphosphate multikinase","termid":"PBO:0051756"}


id: PBO:0034547
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_RNA_localization_to_nucleus","termid":"PBO:0034547"}


id: GO:1903649
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of cytoplasmic transport.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:25049409"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cytoplasmic transport (obsolete GO:1903649)","synonyms":[{"name":"regulation of cytoplasmic streaming","type":"narrow"}],"termid":"GO:1903649"}


id: GO:0003151
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the outflow tract are generated and organized. The outflow tract is the portion of the heart through which blood flows into the arteries.","definition_xrefs":["UBERON:0004145","GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"heart morphogenesis","termid":"GO:0003007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"outflow tract morphogenesis","termid":"GO:0003151"}


id: PATO:0000340
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000340 relative compatability value (obsolete PATO:0000340)","termid":"PATO:0000340"}


id: GO:0051718
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + CpG (in DNA) = S-adenosyl-L-homocysteine + 5-MeCpG (in DNA).","definition_xrefs":["EC:2.1.1.37","PMID:15689527"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA (cytosine-5-)-methyltransferase activity","termid":"GO:0003886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003824","GO:0140097","GO:0016741","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates","secondary_identifiers":["Reactome:R-HSA-5334151"],"synonyms":[{"name":"HpaII methylase","type":"narrow"},{"name":"HpaII' methylase","type":"narrow"},{"name":"M.BsuRIa","type":"narrow"},{"name":"M.BsuRIb","type":"narrow"}],"termid":"GO:0051718"}


id: MOD:00521
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod N-linked glycosylation","definition_xrefs":["RESID:AA0151#var","Unimod:153"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N4-glycosyl-L-asparagine","termid":"MOD:00160"},{"relation_name":"is_a","term_name":"complex glycosylation","termid":"MOD:00725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"Hex2HexNAc2 N4-glycosylated asparagine","synonyms":[{"name":"Hex(2)HexNAc(2)","type":"related"},{"name":"Hex2HexNAc2","type":"related"}],"termid":"MOD:00521"}


id: PBO:0027848
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_elongated_mononucleate_vegetative_cell","termid":"PBO:0027848"}


id: GO:0070036
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate, to drive the unwinding of a DNA or RNA helix.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete GTP-dependent helicase activity (obsolete GO:0070036)","termid":"GO:0070036"}


id: FYPO:0006616
data:
  {"alleles_by_uniquename":{"SJAG_00028:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00028","name":"rga6delta","uniquename":"SJAG_00028:allele-1"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115197,115198],"is_not":false,"summary":null,"term":"FYPO:0006616"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is viable and has a diameter greater than normal. Cell volume may or may not be increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"increased cell diameter","termid":"FYPO:0006615"},{"relation_name":"is_a","term_name":"viable cell","termid":"FYPO:0000124"},{"relation_name":"is_a","term_name":"abnormal vegetative cell shape","termid":"FYPO:0002196"},{"relation_name":"is_a","term_name":"increased cell diameter","termid":"FYPO:0006615"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00028":null,"SJAG_04522":null},"genotype_count":2,"genotypes_by_uniquename":{"rga4delta":{"display_name":"rga4delta","display_uniquename":"rga4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]}]},"rga6delta":{"display_name":"rga6delta","display_uniquename":"rga6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0001320","FYPO:0000004","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"viable vegetative cell with increased cell diameter","references_by_uniquename":{"PMID:30664646":null},"single_locus_annotated_genes":["SJAG_04522","SJAG_00028"],"single_locus_genotype_uniquenames":["rga6delta","rga4delta"],"synonyms":[{"name":"viable cell with increased cell diameter during vegetative growth","type":"exact"},{"name":"viable vegetative cell with increased cell diameter during mitotic cell cycle","type":"related"},{"name":"viable vegetative cell with increased cell thickness","type":"exact"},{"name":"viable vegetative cell with increased cell width","type":"exact"}],"termid":"FYPO:0006616","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0006616":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: PBO:0070766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L11 pseudogene 2","termid":"PBO:0070766"}


id: PR:P87239
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DnaJ homolog subfamily A member 3, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04315","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ homolog 1, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4G3.14","secondary_identifiers":["UniProtKB:P87239"],"synonyms":[{"name":"Spom972h-DNAJA3","type":"exact"}],"termid":"PR:P87239"}


id: PBO:0052573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KMT5A pseudogene 1","termid":"PBO:0052573"}


id: MOD:00433
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with an glucose group through a glycosidic bond.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosylated residue","termid":"MOD:00434"},{"relation_name":"is_a","term_name":"glucosylated","termid":"MOD:00726"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"glucosylated residue","synonyms":[{"name":"GlcRes","type":"exact"}],"termid":"MOD:00433"}


id: PBO:0045486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DSC1/DSC2 antisense RNA","termid":"PBO:0045486"}


id: PBO:0052934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 21-2","termid":"PBO:0052934"}


id: FYPO:0003179
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of intragenic meiotic recombination is decreased. Intragenic meiotic recombination can result in gene conversion events.","definition_xrefs":["PMID:16169489","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased meiotic recombination","termid":"FYPO:0000485"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000293"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0005447","FYPO:0000002","FYPO:0000293"],"is_obsolete":false,"name":"decreased intragenic meiotic recombination","synonyms":[{"name":"decreased meiotic intragenic recombination","type":"exact"},{"name":"reduced intragenic meiotic recombination","type":"exact"}],"termid":"FYPO:0003179"}


id: PBO:0030207
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_vegetative_cell","termid":"PBO:0030207"}


id: PBO:0044065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cystatin 9-like pseudogene 1","termid":"PBO:0044065"}


id: PBO:0031086
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-translation_regulation_phenotype","termid":"PBO:0031086"}


id: GO:0102048
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: indole-3-acetate + L-isoleucine + ATP(4-) = H+ + indole-3-acetyl-isoleucine + AMP(2-) + diphosphoric acid.","definition_xrefs":["GOC:pz","PMID:15659623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-nitrogen bonds","termid":"GO:0016879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"indole-3-acetyl-isoleucine synthetase activity","secondary_identifiers":["MetaCyc:RXN-10430"],"termid":"GO:0102048"}


id: MOD:00743
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a molybdenum atom or a cluster containing molybdenum for hydrogen atoms, or that coordinates a molybdenum ion.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal or metal cluster containing modified residue","termid":"MOD:00698"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"molybdenum containing modified residue","synonyms":[{"name":"MoRes","type":"exact"}],"termid":"MOD:00743"}


id: GO:0140462
data:
  {"annotated_genes":["SJAG_01745"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87483],"is_not":false,"summary":null,"term":"GO:0140462"}]},"cv_name":"biological_process","definition":"The organization of chromatin into heterochromatin at the pericentric region of a chromosome.","definition_xrefs":["PMID:26744419"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterochromatin formation","termid":"GO:0031507"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01745":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006325"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0006325"],"is_obsolete":false,"name":"pericentric heterochromatin organization","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140462","terms_by_termid":{"GO:0140462":null}}


id: GO:0061347
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors including C-Jun N-terminal kinase (JNK) to modulate cytoskeletal elements and control cell polarity that contributes to the shaping of the outflow tract.","definition_xrefs":["GOC:mtg_heart","PMID:19056682","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"planar cell polarity pathway involved in heart morphogenesis","termid":"GO:0061346"},{"relation_name":"part_of","term_name":"outflow tract morphogenesis","termid":"GO:0003151"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"planar cell polarity pathway involved in outflow tract morphogenesis","termid":"GO:0061347"}


id: PBO:0071399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 5","termid":"PBO:0071399"}


id: PATO:0002492
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterolaterally.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orientation","termid":"PATO:0000133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anterolateral orientation","synonyms":[{"name":"anterolaterally directed","type":"exact"}],"termid":"PATO:0002492"}


id: MOD:01299
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification produced by formation of an adduct of an L-histidine residue with 4-hydroxynonenal artificially reduced by a reagent such as NaBH4.","definition_xrefs":["PubMed:15133838","PubMed:11910026","PubMed:12148805","Unimod:335#K"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"lysine 4-hydroxynonenal adduct","termid":"MOD:01238"},{"relation_name":"is_a","term_name":"reduced 4-hydroxynonenal adduct","termid":"MOD:00642"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reduced lysine 4-hydroxynonenal adduct","synonyms":[{"name":"HNE+Delta:H(2)","type":"related"},{"name":"reduced 4-Hydroxynonenal","type":"related"}],"termid":"MOD:01299"}


id: PBO:0035693
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-acts_upstream_of","termid":"PBO:0035693"}


id: GO:0061113
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Morphogenesis of the pancreas. Morphogenesis is the process in which anatomical structures are generated and organized.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ morphogenesis","termid":"GO:0009887"},{"relation_name":"part_of","term_name":"pancreas development","termid":"GO:0031016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pancreas morphogenesis","termid":"GO:0061113"}


id: PBO:0057657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1249","termid":"PBO:0057657"}


id: PBO:0082468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Calmodulin; Ca2+ binding protein that regulates Ca2+ independent processes (mitosis, bud growth, actin organization, endocytosis, etc.) and Ca2+ dependent processes (stress-activated pathways), targets include Nuf1p, Myo2p and calcineurin; binds to the Hog1p MAPK in response to hyperosmotic stress; potentiates membrane tubulation and constriction mediated by the Rvs161p-Rvs167p complex; human CALM1 or CALM2 functionally complement repression induced inviability","termid":"PBO:0082468"}


id: PBO:0060650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NCOA7 antisense RNA 1","termid":"PBO:0060650"}


id: PBO:0055858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LDL receptor related protein 5","termid":"PBO:0055858"}


id: PBO:0077728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trinucleotide repeat containing 18","termid":"PBO:0077728"}


id: GO:0070741
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-6 stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cytokine","termid":"GO:0034097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to interleukin-6","synonyms":[{"name":"response to IL-6","type":"exact"}],"termid":"GO:0070741"}


id: PBO:0050193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 10","termid":"PBO:0050193"}


id: PBO:0091466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial translational activator, Mpa1","termid":"PBO:0091466"}


id: GO:0045697
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of synergid cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell differentiation","termid":"GO:0045595"},{"relation_name":"regulates","term_name":"synergid differentiation","termid":"GO:0009563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of synergid differentiation","synonyms":[{"name":"regulation of synergid cell differentiation","type":"exact"}],"termid":"GO:0045697"}


id: GO:0015936
data:
  {"annotated_genes":["SJAG_02247","SJAG_04627","SJAG_00427","SJAG_05277","SJAG_04288","SJAG_01139"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85532,88354,106734,110967,113176],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015937"},{"annotations":[95975],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015938"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide metabolic process","termid":"GO:0009150"},{"relation_name":"is_a","term_name":"ribonucleoside bisphosphate metabolic process","termid":"GO:0033875"},{"relation_name":"is_a","term_name":"purine nucleoside bisphosphate metabolic process","termid":"GO:0034032"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00427":null,"SJAG_01139":null,"SJAG_02247":null,"SJAG_04288":null,"SJAG_04627":null,"SJAG_05277":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"coenzyme A metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0006763"],"synonyms":[{"name":"CoA metabolism","type":"exact"},{"name":"coenzyme A metabolism","type":"exact"}],"termid":"GO:0015936","terms_by_termid":{"GO:0015937":null,"GO:0015938":null}}


id: GO:0042551
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for a neuron to attain its fully functional state.","definition_xrefs":["GOC:jl","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell maturation","termid":"GO:0048469"},{"relation_name":"part_of","term_name":"neuron development","termid":"GO:0048666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuron maturation","termid":"GO:0042551"}


id: GO:0030698
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the transfer of a methyl group from 5,10-methylenetetrahydrofolate to the C5 atom of the uridine residue at position 54 in a tRNA molecule. This occurs in most Gram-positive bacteria and some Gram-negative bacteria.","definition_xrefs":["GOC:hjd","ISBN:1555811337"],"gene_count":0,"genotype_count":0,"name":"obsolete 5,10-methylenetetrahydrofolate-dependent tRNA (m5U54) methyltransferase activity (obsolete GO:0030698)","synonyms":[{"name":"RUMT","type":"broad"}],"termid":"GO:0030698"}


id: GO:0006570
data:
  {"annotated_genes":["SJAG_00493","SJAG_00518","SJAG_04652","SJAG_03312"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85993,94490,110934],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006571"},{"annotations":[102900],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006572"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aromatic amino acid metabolic process","termid":"GO:0009072"},{"relation_name":"is_a","term_name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process","termid":"GO:1902221"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00493":null,"SJAG_00518":null,"SJAG_03312":null,"SJAG_04652":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"tyrosine metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Tyrosine","UM-BBD_pathwayID:tyr"],"synonyms":[{"name":"tyrosine metabolism","type":"exact"}],"termid":"GO:0006570","terms_by_termid":{"GO:0006571":null,"GO:0006572":null}}


id: GO:0019634
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving phosphonates, any organic compounds containing one or more C-PO(OH)2 or C-PO(OR)2 (with R=alkyl, aryl) groups. Metabolism of phosphonic acid itself, an inorganic compound without the biochemically relevant C-P bond, is not included.","definition_xrefs":["GOC:js","ISBN:0721662544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorus metabolic process","termid":"GO:0006793"},{"relation_name":"is_a","term_name":"oxoacid metabolic process","termid":"GO:0043436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"organic phosphonate metabolic process","synonyms":[{"name":"organophosphonate metabolic process","type":"related"},{"name":"phosphonate metabolism","type":"exact"}],"termid":"GO:0019634"}


id: SO:0001301
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"2_methylthio_N6_isopentenyladenosine is a modified adenosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_adenosine","termid":"SO:0001273"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"two_methylthio_N6_isopentenyladenosine","secondary_identifiers":["RNAMOD:007"],"synonyms":[{"name":"2-methylthio-N6-isopentenyladenosine","type":"exact"},{"name":"ms2i6A","type":"exact"},{"name":"two methylthio N6 isopentenyladenosine","type":"exact"}],"termid":"SO:0001301"}


id: GO:0140927
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of cyclic-di-GMP from one side of a membrane to the other.","definition_xrefs":["PMID:34965418"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanine nucleotide transmembrane transporter activity","termid":"GO:0001409"},{"relation_name":"is_a","term_name":"purine ribonucleotide transmembrane transporter activity","termid":"GO:0005346"},{"relation_name":"is_a","term_name":"organic anion transmembrane transporter activity","termid":"GO:0008514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"cyclic-di-GMP transmembrane transporter activity","termid":"GO:0140927"}


id: GO:0050159
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: o-orsellinate + H+ = CO2 + orcinol.","definition_xrefs":["EC:4.1.1.58","RHEA:16733"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"orsellinate decarboxylase activity","secondary_identifiers":["MetaCyc:ORSELLINATE-DECARBOXYLASE-RXN","KEGG_REACTION:R02831"],"synonyms":[{"name":"orsellinate carboxy-lyase (orcinol-forming)","type":"related"},{"name":"orsellinate carboxy-lyase activity","type":"related"}],"termid":"GO:0050159"}


id: GO:0016754
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-malate + 1-O-sinapoyl-beta-D-glucose = D-glucose + sinapoyl (S)-malate.","definition_xrefs":["EC:2.3.1.92","RHEA:12625"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-sinapoyltransferase activity","termid":"GO:0016753"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"sinapoylglucose-malate O-sinapoyltransferase activity","secondary_identifiers":["KEGG_REACTION:R03323","MetaCyc:2.3.1.92-RXN"],"synonyms":[{"name":"1-O-sinapoyl-beta-D-glucose:(S)-malate O-sinapoyltransferase activity","type":"related"},{"name":"1-sinapoylglucose-L-malate sinapoyltransferase activity","type":"related"},{"name":"sinapoylglucose:malate sinapoyltransferase activity","type":"exact"}],"termid":"GO:0016754"}


id: GO:0062091
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex located in the chloroplast inner membrane and facing the stroma that is associated with the chloroplast inner membrane translocase complex and provides the ATPase motor activity to drive import of proteins into the chloroplast stroma.","definition_xrefs":["PMID:30309901"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATPase complex","termid":"GO:1904949"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Ycf2/FtsHi complex","synonyms":[{"name":"TIC complex associated chloroplast protein import motor","type":"exact"}],"termid":"GO:0062091"}


id: PBO:0074574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA host gene 30","termid":"PBO:0074574"}


id: PBO:0087383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sterol/phosphatidylinositol-4-phosphate (PI(4)P) exchanger; one of seven members of the yeast oxysterol binding protein family; involved in negative regulation of Sec14p-dependent Golgi complex secretory functions, peripheral membrane protein that localizes to the Golgi complex; KES1 has a paralog, HES1, that arose from the whole genome duplication","termid":"PBO:0087383"}


id: GO:1903064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of reverse cholesterol transport.","definition_xrefs":["PMID:23931754","GOC:rl","GO_REF:0000058","GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cholesterol transport","termid":"GO:0032376"},{"relation_name":"is_a","term_name":"regulation of reverse cholesterol transport","termid":"GO:1903062"},{"relation_name":"positively_regulates","term_name":"reverse cholesterol transport","termid":"GO:0043691"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of reverse cholesterol transport","synonyms":[{"name":"activation of reverse cholesterol transport","type":"narrow"},{"name":"up regulation of reverse cholesterol transport","type":"exact"},{"name":"up-regulation of reverse cholesterol transport","type":"exact"},{"name":"upregulation of reverse cholesterol transport","type":"exact"}],"termid":"GO:1903064"}


id: PR:Q09686
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC13C5.04 gene.","definition_xrefs":["UniProtKB:Q09686","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamine amidotransferase-like protein C13C5.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13C5.04","synonyms":[{"name":"Spom972h-SPAC13C5.04","type":"exact"}],"termid":"PR:Q09686"}


id: GO:0046936
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2'-deoxyadenosine + H2O = deoxyinosine + NH3.","definition_xrefs":["GOC:ai","RHEA:28190"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"},{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0016810","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"2'-deoxyadenosine deaminase activity","secondary_identifiers":["MetaCyc:ADDALT-RXN","EC:3.5.4.4"],"synonyms":[{"name":"deoxyadenosine deaminase reaction","type":"exact"}],"termid":"GO:0046936"}


id: PBO:0012609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteasome complex subunit alpha 2, Pre8 (predicted)","termid":"PBO:0012609"}


id: MOD:01542
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a residue with the Applied Biosystems iTRAQ8plex-115 reporter+balance group.","definition_xrefs":["Unimod:731"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(13)C isotope tagged reagent","termid":"MOD:01428"},{"relation_name":"is_a","term_name":"(15)N isotope tagged reagent","termid":"MOD:01429"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent acylated residue","termid":"MOD:01526"},{"relation_name":"is_a","term_name":"modifications with monoisotopic mass differences that are nominally equal at 304.199039 Da","termid":"MOD:01584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ8plex-115 reporter+balance reagent acylated residue","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Accurate mass for 115, 118, 119 & 121","type":"related"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"iTRAQ8plex:13C(6)15N(2)","type":"related"}],"termid":"MOD:01542"}


id: FYPO:0001007
data:
  {"alleles_by_uniquename":{"SJAG_04883:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04883","name":"ptp4delta","uniquename":"SJAG_04883:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115416],"is_not":false,"summary":null,"term":"FYPO:0001007"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitosis is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic cell cycle process","termid":"FYPO:0002741"},{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04883":null},"genotype_count":1,"genotypes_by_uniquename":{"ptp4delta":{"display_name":"ptp4delta","display_uniquename":"ptp4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04883:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal mitosis","references_by_uniquename":{"PMID:36695178":null},"single_locus_annotated_genes":["SJAG_04883"],"single_locus_genotype_uniquenames":["ptp4delta"],"synonyms":[{"name":"mitosis: normal","type":"exact"},{"name":"normal mitosis during mitotic cell cycle","type":"related"},{"name":"normal mitosis during vegetative growth","type":"exact"}],"termid":"FYPO:0001007","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0001007":null}}


id: PBO:0087262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Serine/threonine protein phosphatase Z, isoform of Ppz1p; involved in regulation of potassium transport, which affects osmotic stability, cell cycle progression, and halotolerance","termid":"PBO:0087262"}


id: GO:0047720
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (indol-3-yl)acetaldehyde oxime = (indol-3-yl)acetonitrile + H2O.","definition_xrefs":["RHEA:23156"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrogen-oxygen hydrolyase activity","termid":"GO:0141122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"indoleacetaldoxime dehydratase activity","secondary_identifiers":["EC:4.8.1.3","MetaCyc:RXN-19838","KEGG_REACTION:R04093"],"synonyms":[{"name":"(indol-3-yl)acetaldehyde-oxime hydro-lyase activity","type":"exact"},{"name":"3-indoleacetaldoxime hydro-lyase activity","type":"exact"},{"name":"indole-3-acetaldehyde-oxime hydro-lyase activity","type":"exact"},{"name":"indole-3-acetaldoxime hydro-lyase activity","type":"exact"},{"name":"indoleacetaldoxime hydro-lyase activity","type":"exact"}],"termid":"GO:0047720"}


id: GO:0003677
data:
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id: FYPO:0007769
data:
  {"alleles_by_uniquename":{"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115469],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007770"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which heterochromatin tethering at the nuclear periphery persists after the onset of mitosis. Normally, heterochromatic parts of chromosomes, such as centromeres and telomeres, are maintained at the nuclear periphery during interphase and released during mitosis.","definition_xrefs":["PomBase:mah","PMID:32109380"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal heterochromatin tethering at nuclear periphery","termid":"FYPO:0007768"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03892":null},"genotype_count":1,"genotypes_by_uniquename":{"vps4delta":{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"increased heterochromatin tethering at nuclear periphery during mitosis","references_by_uniquename":{"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_03892"],"single_locus_genotype_uniquenames":["vps4delta"],"synonyms":[{"name":"increased heterochromatin anchoring at nuclear periphery during mitosis","type":"exact"},{"name":"increased heterochromatin tethering at nuclear periphery during mitosis during mitotic cell cycle","type":"related"},{"name":"increased heterochromatin tethering at nuclear periphery during mitosis during vegetative growth","type":"exact"},{"name":"increased heterochromatin tethering at nuclear periphery during mitotic M phase","type":"related"},{"name":"increased heterochromatin tethering at nuclear periphery during mitotic nuclear division","type":"exact"}],"termid":"FYPO:0007769","terms_by_termid":{"FYPO:0007770":null,"FYPO_EXT:0000001":null}}


id: GO:0106181
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the translocation of inorganic anions.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete translocase activity acting on inorganic anions (obsolete GO:0106181)","secondary_identifiers":["EC:7.3.-.-"],"termid":"GO:0106181"}


id: PBO:0091647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane amino acid transmembrane transporter Aat1","termid":"PBO:0091647"}


id: GO:1900218
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of apoptotic process involved in metanephric nephron tubule development.","definition_xrefs":["GOC:TermGenie","PMID:17314325","GOC:mtg_kidney_jan10","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic process involved in metanephric nephron tubule development","termid":"GO:1900217"},{"relation_name":"is_a","term_name":"negative regulation of apoptotic process involved in development","termid":"GO:1904746"},{"relation_name":"negatively_regulates","term_name":"apoptotic process involved in metanephric nephron tubule development","termid":"GO:1900205"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of apoptotic process involved in metanephric nephron tubule development","synonyms":[{"name":"down regulation of apoptosis of metanephric nephron tubule development","type":"narrow"},{"name":"down regulation of apoptotic cell death of metanephric nephron tubule development","type":"exact"},{"name":"down regulation of apoptotic process involved in metanephric nephron tubule development","type":"exact"},{"name":"down regulation of apoptotic process of metanephric nephron tubule development","type":"exact"},{"name":"down regulation of apoptotic program of metanephric nephron tubule development","type":"narrow"},{"name":"down regulation of apoptotic programmed cell death of metanephric nephron tubule development","type":"exact"},{"name":"down regulation of programmed cell death by apoptosis of metanephric nephron tubule development","type":"exact"},{"name":"down regulation of signaling (initiator) caspase activity of metanephric nephron tubule development","type":"related"},{"name":"down regulation of type I programmed cell death of metanephric nephron tubule development","type":"narrow"},{"name":"down-regulation of apoptosis of metanephric nephron tubule development","type":"narrow"},{"name":"down-regulation of apoptotic cell death of metanephric nephron tubule development","type":"exact"},{"name":"down-regulation of apoptotic process involved in metanephric nephron tubule development","type":"exact"},{"name":"down-regulation of apoptotic process of metanephric nephron tubule development","type":"exact"},{"name":"down-regulation of apoptotic program of metanephric nephron tubule development","type":"narrow"},{"name":"down-regulation of apoptotic programmed cell death of metanephric nephron tubule development","type":"exact"},{"name":"down-regulation of programmed cell death by apoptosis of metanephric nephron tubule development","type":"exact"},{"name":"down-regulation of signaling (initiator) caspase activity of metanephric nephron tubule development","type":"related"},{"name":"down-regulation of type I programmed cell death of metanephric nephron tubule development","type":"narrow"},{"name":"downregulation of apoptosis of metanephric nephron tubule development","type":"narrow"},{"name":"downregulation of apoptotic cell death of metanephric nephron tubule development","type":"exact"},{"name":"downregulation of apoptotic process involved in metanephric nephron tubule development","type":"exact"},{"name":"downregulation of apoptotic process of metanephric nephron tubule development","type":"exact"},{"name":"downregulation of apoptotic program of metanephric nephron tubule development","type":"narrow"},{"name":"downregulation of apoptotic programmed cell death of metanephric nephron tubule development","type":"exact"},{"name":"downregulation of programmed cell death by apoptosis of metanephric nephron tubule development","type":"exact"},{"name":"downregulation of signaling (initiator) caspase activity of metanephric nephron tubule development","type":"related"},{"name":"downregulation of type I programmed cell death of metanephric nephron tubule development","type":"narrow"},{"name":"inhibition of apoptosis of metanephric nephron tubule development","type":"narrow"},{"name":"inhibition of apoptotic cell death of metanephric nephron tubule development","type":"exact"},{"name":"inhibition of apoptotic process involved in metanephric nephron tubule development","type":"narrow"},{"name":"inhibition of apoptotic process of metanephric nephron tubule development","type":"exact"},{"name":"inhibition of apoptotic program of metanephric nephron tubule development","type":"narrow"},{"name":"inhibition of apoptotic programmed cell death of metanephric nephron tubule development","type":"exact"},{"name":"inhibition of programmed cell death by apoptosis of metanephric nephron tubule development","type":"exact"},{"name":"inhibition of signaling (initiator) caspase activity of metanephric nephron tubule development","type":"related"},{"name":"inhibition of type I programmed cell death of metanephric nephron tubule development","type":"narrow"},{"name":"negative regulation of apoptosis of metanephric nephron tubule development","type":"narrow"},{"name":"negative regulation of apoptotic cell death of metanephric nephron tubule development","type":"exact"},{"name":"negative regulation of apoptotic process of metanephric nephron tubule development","type":"exact"},{"name":"negative regulation of apoptotic program of metanephric nephron tubule development","type":"narrow"},{"name":"negative regulation of apoptotic programmed cell death of metanephric nephron tubule development","type":"exact"},{"name":"negative regulation of programmed cell death by apoptosis of metanephric nephron tubule development","type":"exact"},{"name":"negative regulation of signaling (initiator) caspase activity of metanephric nephron tubule development","type":"related"},{"name":"negative regulation of type I programmed cell death of metanephric nephron tubule development","type":"narrow"}],"termid":"GO:1900218"}


id: PBO:0044394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily C member 19","termid":"PBO:0044394"}


id: GO:0004023
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+; can proceed in the absence of a metal ion.","definition_xrefs":["GOC:mah","EC:1.1.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol dehydrogenase (NAD+) activity","termid":"GO:0004022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"alcohol dehydrogenase (NAD+) activity, metal ion-independent","synonyms":[{"name":"alcohol dehydrogenase activity, metal ion-independent","type":"broad"}],"termid":"GO:0004023"}


id: PR:Q9P4X1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pdi4 gene.","definition_xrefs":["UniProtKB:Q9P4X1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin domain-containing protein C959.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC959.05c","synonyms":[{"name":"Spom972h-pdi4","type":"exact"},{"name":"protein disulfide isomerase C959.05c (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P4X1"}


id: PBO:0056443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARK2 pseudogene 16","termid":"PBO:0056443"}


id: PBO:0004757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hsp70 nucleotide exchange factor (predicted)","termid":"PBO:0004757"}


id: PBO:0085171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Oligomeric mitochondrial matrix chaperone; cooperates with Ssc1p in mitochondrial thermotolerance after heat shock; able to prevent the aggregation of misfolded proteins as well as resolubilize protein aggregates","termid":"PBO:0085171"}


id: GO:0060171
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the plasma membrane surrounding a stereocilium.","definition_xrefs":["GOC:dph","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron projection membrane","termid":"GO:0032589"},{"relation_name":"part_of","term_name":"intracellular anatomical structure","termid":"GO:0005622"},{"relation_name":"part_of","term_name":"stereocilium","termid":"GO:0032420"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0005575"],"is_obsolete":false,"name":"stereocilium membrane","termid":"GO:0060171"}


id: PBO:0065053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRELI domain containing 3B pseudogene 7","termid":"PBO:0065053"}


id: GO:0006327
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete random coil binding (obsolete GO:0006327)","synonyms":[{"name":"random coil binding","type":"exact"}],"termid":"GO:0006327"}


id: PBO:0043191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoskeleton associated protein 2","termid":"PBO:0043191"}


id: RO:0002471
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"trophically_interacts_with","termid":"RO:0002438"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_eaten_by","termid":"RO:0002471"}


id: FYPO:0000378
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which apoptosis is normal (i.e. indistinguishable from wild type). Apoptosis is a form of cell death characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies.","definition_xrefs":["PomBase:mah","GO:0006915"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal apoptosis","synonyms":[{"name":"apoptosis: normal","type":"related"}],"termid":"FYPO:0000378"}


id: SO:0001766
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variant that affects one of several possible alleles at that location, such as the major histocompatibility complex (MHC) genes.","direct_ancestors":[{"relation_name":"is_a","term_name":"variant_frequency","termid":"SO:0001763"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polymorphic_variant","synonyms":[{"name":"polymorphic variant","type":"exact"}],"termid":"SO:0001766"}


id: PR:Q09184
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A proliferation-associated protein 2G4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00642","PANTHER:PTHR10804:SF11","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"curved DNA-binding protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23H4.09","secondary_identifiers":["UniProtKB:Q09184"],"synonyms":[{"name":"42 kDa protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PA2G4","type":"exact"}],"termid":"PR:Q09184"}


id: SO:0000145
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"codon","termid":"SO:0000360"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recoded_codon","synonyms":[{"name":"recoded codon","type":"exact"}],"termid":"SO:0000145"}


id: PATO:0002107
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer's being at the edge or boundary of a related entity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peripheral","termid":"PATO:0002107"}


id: GO:0090393
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process aimed at the progression of a sepal giant cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell development","termid":"GO:0048468"},{"relation_name":"part_of","term_name":"sepal giant cell differentiation","termid":"GO:0090392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sepal giant cell development","synonyms":[{"name":"sepal giant cell formation","type":"related"}],"termid":"GO:0090393"}


id: MOD:02034
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod N-linked glycosylation, dHex Hex(3) HexNAc(6)","definition_xrefs":["Unimod:1781","PubMed:33135055"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N4-glycosyl-L-asparagine","termid":"MOD:00160"},{"relation_name":"is_a","term_name":"complex glycosylation","termid":"MOD:00725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"dHex1Hex3HexNAc6 N4-glycosylated asparagine","synonyms":[{"name":"dHex Hex(3) HexNAc(6)","type":"related"}],"termid":"MOD:02034"}


id: PBO:0065541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTENP1 antisense RNA","termid":"PBO:0065541"}


id: PBO:0001123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein (predicted)","termid":"PBO:0001123"}


id: GO:0060229
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases the activity of a lipase, an enzyme that catalyzes of the hydrolysis of a lipid.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0030234","GO:0003674","GO:0140677","GO:0098772"],"is_obsolete":false,"name":"lipase activator activity","termid":"GO:0060229"}


id: PBO:0000498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CwfJ family protein, splicing factor (predicted)","termid":"PBO:0000498"}


id: GO:0043588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue.","definition_xrefs":["UBERON:0002097","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"skin development","synonyms":[{"name":"animal skin development","type":"exact"}],"termid":"GO:0043588"}


id: GO:0044090
data:
  {"annotated_genes":["SJAG_02433","SJAG_03137","SJAG_03851","SJAG_05289"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104693,104782],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000786"},{"annotations":[93766,106396],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061191"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a vacuole.","definition_xrefs":["GOC:mah","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organelle organization","termid":"GO:0010638"},{"relation_name":"is_a","term_name":"regulation of vacuole organization","termid":"GO:0044088"},{"relation_name":"positively_regulates","term_name":"vacuole organization","termid":"GO:0007033"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02433":null,"SJAG_03137":null,"SJAG_03851":null,"SJAG_05289":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of vacuole organization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of vacuole biogenesis","type":"related"},{"name":"positive regulation of vacuole organisation","type":"exact"}],"termid":"GO:0044090","terms_by_termid":{"GO:0061191":null,"GO:2000786":null}}


id: PBO:0056211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member B6","termid":"PBO:0056211"}


id: PBO:0043426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclic nucleotide gated channel subunit alpha 4","termid":"PBO:0043426"}


id: FYPO:0007239
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the old growing cell tip is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:31719163"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to growing cell tip","termid":"FYPO:0003316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization to old growing cell tip","synonyms":[{"name":"normal protein localisation to old growing cell tip","type":"exact"},{"name":"normal protein localization to old growing cell end","type":"exact"},{"name":"normal protein localization to old growing cell tip during mitotic cell cycle","type":"related"},{"name":"normal protein localization to old growing cell tip during vegetative growth","type":"exact"}],"termid":"FYPO:0007239"}


id: PBO:0065795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"R3H domain containing 2 pseudogene 1","termid":"PBO:0065795"}


id: GO:0005488
data:
  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