# terms

id: FYPO:0006815
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 14 of histone H3 in centromere inner repeat regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah","PMID:30652128"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K14 acetylation during vegetative growth","termid":"FYPO:0005310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002274","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0002494"],"is_obsolete":false,"name":"increased histone H3-K14 acetylation at centromere inner repeat during vegetative growth","synonyms":[{"name":"increased histone H3-K14 acetylation at centromere imr during vegetative growth","type":"exact"},{"name":"increased histone H3-K14 acetylation at centromere inner repeat during mitotic cell cycle","type":"related"},{"name":"increased histone H3-K14 acetylation at centromere inner repeat region during vegetative growth","type":"exact"},{"name":"increased histone H3K14 acetylation at centromere inner repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0006815"}


id: PATO:0001114
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001114 relative energy value (obsolete PATO:0001114)","termid":"PATO:0001114"}


id: GO:0061584
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled release of orexin from a cell or a tissue.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide secretion","termid":"GO:0002790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"orexin secretion","synonyms":[{"name":"hypocretin secretion","type":"exact"}],"termid":"GO:0061584"}


id: PBO:0080785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XK related, Y-linked pseudogene 5","termid":"PBO:0080785"}


id: PBO:0017951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cation diffusion family zinc transmembrane transporter Zrg17","termid":"PBO:0017951"}


id: PBO:0043169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cartilage intermediate layer protein 2","termid":"PBO:0043169"}


id: PBO:0078384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three prime repair exonuclease 1","termid":"PBO:0078384"}


id: PBO:0017651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HbrB family protein involved in TOR signaling Bit2 (predicted)","termid":"PBO:0017651"}


id: PBO:0067627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 799, pseudogene","termid":"PBO:0067627"}


id: PBO:0046190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ELMO domain containing 1","termid":"PBO:0046190"}


id: PBO:0039350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosylmethionine decarboxylase 1","termid":"PBO:0039350"}


id: GO:0071224
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptidoglycan stimulus. Peptidoglycan is a bacterial cell wall macromolecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to peptidoglycan","termid":"GO:0032494"},{"relation_name":"is_a","term_name":"cellular response to molecule of bacterial origin","termid":"GO:0071219"},{"relation_name":"is_a","term_name":"cellular response to organonitrogen compound","termid":"GO:0071417"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to peptidoglycan","termid":"GO:0071224"}


id: PBO:0091546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces pombe specific protein, expressed during meiotic cell cycle","termid":"PBO:0091546"}


id: PR:Q02088
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tropomyosin cdc8 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tropomyosin cdc8 (Schizosaccharomyces pombe)","termid":"PR:000027986"},{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tropomyosin cdc8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC27F1.02c","secondary_identifiers":["UniProtKB:Q02088"],"synonyms":[{"name":"Spom972h-cdc8","type":"exact"}],"termid":"PR:Q02088"}


id: PBO:0085506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S10, no bacterial homolog; RPS10A has a paralog, RPS10B, that arose from the whole genome duplication; mutations in the human homolog associated with Diamond-Blackfan anemia","termid":"PBO:0085506"}


id: GO:1902107
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of leukocyte differentiation.","definition_xrefs":["GOC:add","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte differentiation","termid":"GO:1902105"},{"relation_name":"is_a","term_name":"positive regulation of hemopoiesis","termid":"GO:1903708"},{"relation_name":"positively_regulates","term_name":"leukocyte differentiation","termid":"GO:0002521"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of leukocyte differentiation","synonyms":[{"name":"activation of immune cell differentiation","type":"narrow"},{"name":"activation of leucocyte differentiation","type":"narrow"},{"name":"activation of leukocyte differentiation","type":"narrow"},{"name":"positive regulation of immune cell differentiation","type":"exact"},{"name":"positive regulation of leucocyte differentiation","type":"exact"},{"name":"up regulation of immune cell differentiation","type":"exact"},{"name":"up regulation of leucocyte differentiation","type":"exact"},{"name":"up regulation of leukocyte differentiation","type":"exact"},{"name":"up-regulation of immune cell differentiation","type":"exact"},{"name":"up-regulation of leucocyte differentiation","type":"exact"},{"name":"up-regulation of leukocyte differentiation","type":"exact"},{"name":"upregulation of immune cell differentiation","type":"exact"},{"name":"upregulation of leucocyte differentiation","type":"exact"},{"name":"upregulation of leukocyte differentiation","type":"exact"}],"termid":"GO:1902107"}


id: PBO:0056104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LY6/PLAUR domain containing 9, pseudogene","termid":"PBO:0056104"}


id: GO:0061760
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An defense response against a fungus mediated through an innate immune response. An innate immune response is mediated by germline encoded components that directly recognize components of potential pathogens.","definition_xrefs":["PMID:22470487","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"innate immune response","termid":"GO:0045087"},{"relation_name":"is_a","term_name":"defense response to fungus","termid":"GO:0050832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antifungal innate immune response","termid":"GO:0061760"}


id: GO:0031688
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an A2B adenosine receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenosine receptor binding","termid":"GO:0031685"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"A2B adenosine receptor binding","synonyms":[{"name":"A2B adenosine receptor ligand","type":"narrow"}],"termid":"GO:0031688"}


id: PATO:0000018
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A luminous flux quality inhering in a bearer by virtue of the bearer's emitting longer wavelength light following the absorption of shorter wavelength radiation; fluorescence is common with aromatic compounds with several rings joined together.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"luminous flux","termid":"PATO:0001296"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fluorescence","termid":"PATO:0000018"}


id: GO:1904828
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of hydrogen sulfide biosynthetic process.","definition_xrefs":["PMID:22034194","GOC:BHF","GOC:TermGenie","GO_REF:0000058","GOC:BHF_miRNA","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular biosynthetic process","termid":"GO:0031328"},{"relation_name":"is_a","term_name":"positive regulation of sulfur metabolic process","termid":"GO:0051176"},{"relation_name":"is_a","term_name":"regulation of hydrogen sulfide biosynthetic process","termid":"GO:1904826"},{"relation_name":"positively_regulates","term_name":"hydrogen sulfide biosynthetic process","termid":"GO:0070814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"positively_regulates","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"positive regulation of hydrogen sulfide biosynthetic process","synonyms":[{"name":"activation of hydrogen sulfide anabolism","type":"narrow"},{"name":"activation of hydrogen sulfide biosynthesis","type":"narrow"},{"name":"activation of hydrogen sulfide biosynthetic process","type":"narrow"},{"name":"activation of hydrogen sulfide formation","type":"narrow"},{"name":"activation of hydrogen sulfide synthesis","type":"narrow"},{"name":"activation of hydrogen sulphide biosynthesis","type":"narrow"},{"name":"activation of hydrogen sulphide biosynthetic process","type":"narrow"},{"name":"positive regulation of hydrogen sulfide anabolism","type":"exact"},{"name":"positive regulation of hydrogen sulfide biosynthesis","type":"exact"},{"name":"positive regulation of hydrogen sulfide formation","type":"exact"},{"name":"positive regulation of hydrogen sulfide synthesis","type":"exact"},{"name":"positive regulation of hydrogen sulphide biosynthesis","type":"exact"},{"name":"positive regulation of hydrogen sulphide biosynthetic process","type":"exact"},{"name":"up regulation of hydrogen sulfide anabolism","type":"exact"},{"name":"up regulation of hydrogen sulfide biosynthesis","type":"exact"},{"name":"up regulation of hydrogen sulfide biosynthetic process","type":"exact"},{"name":"up regulation of hydrogen sulfide formation","type":"exact"},{"name":"up regulation of hydrogen sulfide synthesis","type":"exact"},{"name":"up regulation of hydrogen sulphide biosynthesis","type":"exact"},{"name":"up regulation of hydrogen sulphide biosynthetic process","type":"exact"},{"name":"up-regulation of hydrogen sulfide anabolism","type":"exact"},{"name":"up-regulation of hydrogen sulfide biosynthesis","type":"exact"},{"name":"up-regulation of hydrogen sulfide biosynthetic process","type":"exact"},{"name":"up-regulation of hydrogen sulfide formation","type":"exact"},{"name":"up-regulation of hydrogen sulfide synthesis","type":"exact"},{"name":"up-regulation of hydrogen sulphide biosynthesis","type":"exact"},{"name":"up-regulation of hydrogen sulphide biosynthetic process","type":"exact"},{"name":"upregulation of hydrogen sulfide anabolism","type":"exact"},{"name":"upregulation of hydrogen sulfide biosynthesis","type":"exact"},{"name":"upregulation of hydrogen sulfide biosynthetic process","type":"exact"},{"name":"upregulation of hydrogen sulfide formation","type":"exact"},{"name":"upregulation of hydrogen sulfide synthesis","type":"exact"},{"name":"upregulation of hydrogen sulphide biosynthesis","type":"exact"},{"name":"upregulation of hydrogen sulphide biosynthetic process","type":"exact"}],"termid":"GO:1904828"}


id: PBO:0036394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial D-lactate dehydrogenase, cytochrome Dld2 (predicted)","termid":"PBO:0036394"}


id: PBO:0064980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 36, pseudogene","termid":"PBO:0064980"}


id: GO:0003773
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any of a group of specific proteins that are synthesized by both prokaryotic and eukaryotic cells after they have been exposed to a temperature that is higher than normal. Other stresses, e.g. free radical damage, have a similar effect. Many members of the hsp family are not induced but are present in all cells. They are characterized by their role as molecular chaperones.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete heat shock protein activity (obsolete GO:0003773)","synonyms":[{"name":"heat shock protein activity","type":"exact"}],"termid":"GO:0003773"}


id: SO:0000588
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A self spliced intron.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"ribozymic","termid":"SO:0001186"},{"relation_name":"is_a","term_name":"intron","termid":"SO:0000188"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autocatalytically_spliced_intron","synonyms":[{"name":"INSDC_feature:ncRNA","type":"broad"},{"name":"INSDC_qualifier:autocatalytically_spliced_intron","type":"exact"},{"name":"autocatalytically spliced intron","type":"exact"}],"termid":"SO:0000588"}


id: GO:0051079
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled breakdown of the nuclear membranes during the first division of meiosis.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic nuclear membrane disassembly","termid":"GO:0051078"},{"relation_name":"part_of","term_name":"meiosis I","termid":"GO:0007127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0140013","GO:0061024","GO:0007049"],"is_obsolete":false,"name":"meiosis I nuclear membrane disassembly","synonyms":[{"name":"meiosis I nuclear envelope breakdown","type":"related"},{"name":"meiosis I nuclear envelope catabolism","type":"related"},{"name":"meiosis I nuclear envelope degradation","type":"related"},{"name":"meiosis I nuclear envelope disassembly","type":"related"}],"termid":"GO:0051079"}


id: PBO:0055197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2622","termid":"PBO:0055197"}


id: GO:0106361
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dTDP-beta-L-rhamnose + L-arginyl-[protein] = dTDP + H+ + N(omega)-(L-rhamnosyl)-L-arginyl-[protein].","definition_xrefs":["PMID:26060278","PMID:25686373","GOC:sp","RHEA:66692"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosyltransferase activity","termid":"GO:0046527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"protein-arginine rhamnosyltransferase activity","termid":"GO:0106361"}


id: GO:0060130
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a thyroid-stimulating hormone-secreting cell over time, from its formation to the mature structure. A thyroid-stimulating hormone-secreting cell is a basophil cell of the anterior pituitary that produces thyroid stimulating hormone, thyrotrophin.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glandular epithelial cell development","termid":"GO:0002068"},{"relation_name":"is_a","term_name":"neuron development","termid":"GO:0048666"},{"relation_name":"part_of","term_name":"thyroid-stimulating hormone-secreting cell differentiation","termid":"GO:0060129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"thyroid-stimulating hormone-secreting cell development","synonyms":[{"name":"TSH-secreting cell development","type":"exact"},{"name":"beta-basophil development","type":"exact"},{"name":"thyroid stimulating hormone secreting cell development","type":"exact"},{"name":"thyrotrope development","type":"exact"},{"name":"thyrotroph development","type":"exact"}],"termid":"GO:0060130"}


id: GO:0044265
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of a macromolecule, any large molecule including proteins, nucleic acids and carbohydrates, as carried out by individual cells.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular macromolecule catabolic process (obsolete GO:0044265)","synonyms":[{"name":"cellular biopolymer catabolic process","type":"exact"},{"name":"cellular macromolecule breakdown","type":"exact"},{"name":"cellular macromolecule catabolism","type":"exact"},{"name":"cellular macromolecule degradation","type":"exact"}],"termid":"GO:0044265"}


id: GO:0000931
data:
  {"annotated_genes":["SJAG_03835","SJAG_02431","SJAG_07018","SJAG_02886","SJAG_00856","SJAG_01215","SJAG_02609","SJAG_01756"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[93786,96211,97112,102558,104966,105732,106706,113306],"is_not":false,"summary":null,"term":"GO:0000931"}]},"cv_name":"cellular_component","definition":"A complex of gamma tubulin and associated proteins thought to be formed by multimerization of gamma-tubulin small complexes. An example of this structure is found in Schizosaccharomyces pombe.","definition_xrefs":["GOC:mtg_sensu","PMID:12134075","PMID:17021256"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gamma-tubulin complex","termid":"GO:0000930"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00856":null,"SJAG_01215":null,"SJAG_01756":null,"SJAG_02431":null,"SJAG_02609":null,"SJAG_02886":null,"SJAG_03835":null,"SJAG_07018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0015630","GO:0005575"],"is_obsolete":false,"name":"gamma-tubulin ring complex","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0000924","GO:0000929","GO:0008274","GO:0055033","GO:0061494","GO:0000926","GO:0055032","GO:0000925","GO:0055031"],"synonyms":[{"name":"gamma-TuRC","type":"exact"},{"name":"gamma-tubulin large complex","type":"related"},{"name":"gamma-tubulin large complex, centrosomal","type":"narrow"},{"name":"gamma-tubulin large complex, eMTOC","type":"narrow"},{"name":"gamma-tubulin large complex, equatorial microtubule organizing center","type":"narrow"},{"name":"gamma-tubulin large complex, equatorial microtubule organizing centre","type":"narrow"},{"name":"gamma-tubulin large complex, iMTOC","type":"narrow"},{"name":"gamma-tubulin large complex, interphase microtubule organizing center","type":"narrow"},{"name":"gamma-tubulin large complex, interphase microtubule organizing centre","type":"narrow"},{"name":"gamma-tubulin large complex, mitotic spindle pole body","type":"narrow"},{"name":"gamma-tubulin large complex, spindle pole body","type":"narrow"},{"name":"gamma-tubulin ring complex, centrosomal","type":"narrow"}],"termid":"GO:0000931","terms_by_termid":{"GO:0000931":null}}


id: PBO:0091660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isocitrate lyase Icl1","termid":"PBO:0091660"}


id: PBO:0083933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G1 cyclin involved in regulation of the cell cycle; activates Cdc28p kinase to promote the G1 to S phase transition; late G1 specific expression depends on transcription factor complexes, MBF (Swi6p-Mbp1p) and SBF (Swi6p-Swi4p); CLN1 has a paralog, CLN2, that arose from the whole genome duplication; cell cycle arrest phenotype of the cln1 cln2 cln3 triple null mutant is complemented by any of human cyclins CCNA2, CCNB1, CCNC, CCND1, or CCNE1","termid":"PBO:0083933"}


id: PBO:0053774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1019","termid":"PBO:0053774"}


id: GO:0061846
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region of the neuronal cytoplasm located in dendritic spines.","definition_xrefs":["PMID:15673667"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dendrite cytoplasm","termid":"GO:0032839"},{"relation_name":"part_of","term_name":"dendritic spine","termid":"GO:0043197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"dendritic spine cytoplasm","termid":"GO:0061846"}


id: PBO:0047136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 172 member B, pseudogene","termid":"PBO:0047136"}


id: GO:0047230
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: flavonol 3-O-D-glucoside + UDP-L-rhamnose = flavonol 3-O-L-rhamnosylglucoside + UDP.","definition_xrefs":["MetaCyc:2.4.1.159-RXN","EC:2.4.1.159"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glycosyltransferase activity","termid":"GO:0008194"},{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"flavonol-3-O-glucoside L-rhamnosyltransferase activity","secondary_identifiers":["RHEA:22528"],"synonyms":[{"name":"UDP-L-rhamnose:flavonol-3-O-D-glucoside 6''-O-L-rhamnosyltransferase activity","type":"related"},{"name":"UDP-rhamnose:flavonol 3-O-glucoside rhamnosyltransferase activity","type":"related"},{"name":"uridine diphosphorhamnose-flavonol 3-O-glucoside rhamnosyltransferase activity","type":"related"}],"termid":"GO:0047230"}


id: PBO:0036148
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_histone_H3-K9_dimethylation_at_centromere_outer_repeat_during_vegetative_growth","termid":"PBO:0036148"}


id: PBO:0112755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 3 (cytochrome a3 subunit)","termid":"PBO:0112755"}


id: PBO:0043569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type VI alpha 6 chain","termid":"PBO:0043569"}


id: GO:0099608
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that regulates the temporal pattern of a sequence of action potentials in a neuron.","definition_xrefs":["ISBN:978-0071390118"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of action potential","termid":"GO:0098900"},{"relation_name":"regulates","term_name":"spike train","termid":"GO:0098874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of action potential firing pattern","synonyms":[{"name":"spike train sculpting","type":"exact"}],"termid":"GO:0099608"}


id: PBO:0090486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vps20 associated protein Vta1","termid":"PBO:0090486"}


id: PBO:0028361
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_polynucleotide_5'-phosphatase_activity","termid":"PBO:0028361"}


id: GO:1905766
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protection from non-homologous end joining at telomere.","definition_xrefs":["PMID:14690602","GO_REF:0000058","GOC:BHF","GOC:nc","GOC:BHF_telomere","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of telomere maintenance in response to DNA damage","termid":"GO:1904507"},{"relation_name":"is_a","term_name":"regulation of protection from non-homologous end joining at telomere","termid":"GO:1905764"},{"relation_name":"positively_regulates","term_name":"protection from non-homologous end joining at telomere","termid":"GO:0031848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0032200"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0032200"}],"interesting_parent_ids":["GO:0006259","GO:0032200","GO:0008150"],"is_obsolete":false,"name":"positive regulation of protection from non-homologous end joining at telomere","synonyms":[{"name":"activation of protection from NHEJ-mediated telomere fusion","type":"narrow"},{"name":"activation of protection from non-homologous end joining at telomere","type":"narrow"},{"name":"positive regulation of protection from NHEJ-mediated telomere fusion","type":"exact"},{"name":"up regulation of protection from NHEJ-mediated telomere fusion","type":"exact"},{"name":"up regulation of protection from non-homologous end joining at telomere","type":"exact"},{"name":"up-regulation of protection from NHEJ-mediated telomere fusion","type":"exact"},{"name":"up-regulation of protection from non-homologous end joining at telomere","type":"exact"},{"name":"upregulation of protection from NHEJ-mediated telomere fusion","type":"exact"},{"name":"upregulation of protection from non-homologous end joining at telomere","type":"exact"}],"termid":"GO:1905766"}


id: SO:0000973
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A terminal_inverted_repeat_element that is bacterial and only encodes the functions required for its transposition between these inverted repeats.","definition_xrefs":["SO:as"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terminal_inverted_repeat_element","termid":"SO:0000208"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insertion_sequence","secondary_identifiers":["http://en.wikipedia.org/wiki/Insertion_sequence"],"synonyms":[{"name":"IS","type":"related"},{"name":"insertion sequence","type":"exact"}],"termid":"SO:0000973"}


id: PBO:0088616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial outer membrane protein, TspO/MBR-related, implicated in lipid/sterol transport, tspO","termid":"PBO:0088616"}


id: PBO:0090952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"folliculin-interacting protein, BFC/FNIP-Folliculin complex subunit subunit Fnp1","termid":"PBO:0090952"}


id: PBO:0043936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CREB regulated transcription coactivator 1","termid":"PBO:0043936"}


id: PATO:0001764
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An age which is high relative to the normal or average.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"age","termid":"PATO:0000011"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased age","synonyms":[{"name":"high age","type":"exact"}],"termid":"PATO:0001764"}


id: PBO:0065311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 33","termid":"PBO:0065311"}


id: PBO:0028890
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_without_cell_division,_with_swollen_elongated_germ_tube","termid":"PBO:0028890"}


id: PBO:0066936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 238","termid":"PBO:0066936"}


id: PBO:0072583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal RNA processing 1B","termid":"PBO:0072583"}


id: PBO:0000566
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperammonemia","termid":"PBO:0000566"}


id: PBO:0053815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1076","termid":"PBO:0053815"}


id: PBO:0060501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleosome assembly protein 1 like 4","termid":"PBO:0060501"}


id: PBO:0055048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2463","termid":"PBO:0055048"}


id: PBO:0058885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 10522","termid":"PBO:0058885"}


id: PBO:0072702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RuvB like AAA ATPase 2","termid":"PBO:0072702"}


id: PBO:0017049
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ste20 Homologous Kinase","termid":"PBO:0017049"}


id: _global:positively_regulates
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q.","direct_ancestors":[{"relation_name":"is_a","term_name":"causally_upstream_of,_positive_effect","termid":"_global:causally_upstream_of,_positive_effect"},{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"},{"relation_name":"is_a","term_name":"regulates","termid":"_global:regulates"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"positively_regulates","secondary_identifiers":["RO:0002213"],"termid":"_global:positively_regulates"}


id: PBO:0076574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 3 pseudogene 2","termid":"PBO:0076574"}


id: PBO:0087738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the SMC5-SMC6 complex; this complex is involved in removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair; heterozygous mutant shows haploinsufficiency in K1 killer toxin resistance","termid":"PBO:0087738"}


id: PATO:0000290
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000290 absolute respiratory rate (obsolete PATO:0000290)","termid":"PATO:0000290"}


id: PBO:0049445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GVQW motif containing 3","termid":"PBO:0049445"}


id: PBO:0045632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 44 (pseudogene)","termid":"PBO:0045632"}


id: PBO:0075762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/arginine repetitive matrix 2","termid":"PBO:0075762"}


id: GO:0010054
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of a trichoblast, a root epidermal cell that will give rise to a root hair.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"root epidermal cell differentiation","termid":"GO:0010053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"trichoblast differentiation","synonyms":[{"name":"trichoblast cell differentiation","type":"exact"}],"termid":"GO:0010054"}


id: PBO:0026772
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_uracil_import","termid":"PBO:0026772"}


id: GO:0140785
data:
  {"annotated_genes":["SJAG_03405"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[108994],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140786"}]},"cv_name":"molecular_function","definition":"Binding to and responding, e.g. by conformational change, to changes in the cellular level of an amino acid.","definition_xrefs":["GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small molecule sensor activity","termid":"GO:0140299"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03405":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140299"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140299","GO:0003674"],"is_obsolete":false,"name":"amino acid sensor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"amino acid sensing activity","type":"exact"}],"termid":"GO:0140785","terms_by_termid":{"GO:0140786":null}}


id: PBO:0044471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 11 subfamily A member 1","termid":"PBO:0044471"}


id: PBO:0090147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall glucan endo-1,3-alpha-glucosidase Agn1","termid":"PBO:0090147"}


id: PBO:0044063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cystatin 9","termid":"PBO:0044063"}


id: PBO:0073635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sialic acid binding Ig like lectin 21, pseudogene","termid":"PBO:0073635"}


id: PBO:0083645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Elongation factor 2 (EF-2), also encoded by EFT1; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin; EFT2 has a paralog, EFT1, that arose from the whole genome duplication","termid":"PBO:0083645"}


id: GO:0040030
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any heritable epigenetic process that modulates the frequency, rate or extent of protein function by self-perpetuating conformational conversions of normal proteins in healthy cells. This is distinct from, though mechanistically analogous to, disease states associated with prion propagation and amyloidogenesis. A single protein, if it carries a glutamine/asparagine-rich ('prion') domain, can sometimes stably exist in at least two distinct physical states, each associated with a different phenotype; propagation of one of these traits is achieved by a self-perpetuating change in the protein from one form to the other, mediated by conformational changes in the glutamine/asparagine-rich domain. Prion domains are both modular and transferable to other proteins, on which they can confer a heritable epigenetic alteration of function; existing bioinformatics data indicate that they are rare in non-eukarya, but common in eukarya.","definition_xrefs":["GOC:tb","GOC:dph","PMID:10611975","PMID:11050225","GOC:ems","PMID:11447696","PMID:11685242","PMID:11782551"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of molecular function, epigenetic (obsolete GO:0040030)","synonyms":[{"name":"regulation of protein activity, epigenetic","type":"exact"}],"termid":"GO:0040030"}


id: FYPO:0004683
data:
  {"alleles_by_uniquename":{"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115355,115386],"is_not":false,"summary":null,"term":"FYPO:0004683"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the nucleolus is partitioned to daughter cells unequally during cell division.","definition_xrefs":["PomBase:mah","PMID:16478992","PMID:1661641"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process phenotype during vegetative growth","termid":"FYPO:0001331"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03449":null,"SJAG_03575":null},"genotype_count":2,"genotypes_by_uniquename":{"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},"man1delta":{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"unequal nucleolus inheritance","references_by_uniquename":{"PMID:23786411":null,"PMID:24184107":null},"single_locus_annotated_genes":["SJAG_03449","SJAG_03575"],"single_locus_genotype_uniquenames":["apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","man1delta"],"synonyms":[{"name":"unequal mitotic nucleolar partitioning","type":"exact"},{"name":"unequal mitotic nucleolar segregation","type":"exact"},{"name":"unequal nucleolar inheritance","type":"exact"},{"name":"unequal nucleolus distribution","type":"exact"},{"name":"unequal nucleolus inheritance during mitotic cell cycle","type":"related"},{"name":"unequal nucleolus inheritance during vegetative growth","type":"exact"},{"name":"unequal nucleolus partitioning","type":"exact"},{"name":"unequal nucleolus segregation","type":"exact"},{"name":"unequal rDNA segregation","type":"related"}],"termid":"FYPO:0004683","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0004683":null}}


id: PBO:0064612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POU class 5 homeobox 1 pseudogene 2","termid":"PBO:0064612"}


id: GO:0031371
data:
  {"annotated_genes":["SJAG_03006","SJAG_00320","SJAG_00293","SJAG_02319"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[112343,114939,87369,89516],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033503"}]},"cv_name":"cellular_component","definition":"Any complex that possesses ubiquitin conjugating enzyme activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00293":null,"SJAG_00320":null,"SJAG_02319":null,"SJAG_03006":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"ubiquitin conjugating enzyme complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"E2 complex","type":"related"}],"termid":"GO:0031371","terms_by_termid":{"GO:0033503":null}}


id: PBO:0000490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GAT domain","termid":"PBO:0000490"}


id: GO:0098573
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the mitochondrial membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of mitochondrial membrane (obsolete GO:0098573)","synonyms":[{"name":"intrinsic to mitochondrial membrane","type":"narrow"}],"termid":"GO:0098573"}


id: PBO:0000132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ELLA family acetyltransferase (predicted)","termid":"PBO:0000132"}


id: GO:0070509
data:
  {"annotated_genes":["SJAG_04551","SJAG_01090","SJAG_05229","SJAG_02877","SJAG_00296","SJAG_04668","SJAG_03631"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88530,110565,95761,88477],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098703"},{"annotations":[87353,109495],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1905949"},{"annotations":[98282],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1905665"}]},"cv_name":"biological_process","definition":"The directed movement of calcium ions into a cell or organelle.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium ion transport","termid":"GO:0006816"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00296":null,"SJAG_01090":null,"SJAG_02877":null,"SJAG_03631":null,"SJAG_04551":null,"SJAG_04668":null,"SJAG_05229":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"calcium ion import","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"calcium ion uptake","type":"exact"},{"name":"transmembrane calcium influx","type":"related"}],"termid":"GO:0070509","terms_by_termid":{"GO:0098703":null,"GO:1905665":null,"GO:1905949":null}}


id: PBO:0057465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR583 host gene","termid":"PBO:0057465"}


id: PBO:0062919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyrimidinergic receptor P2Y4","termid":"PBO:0062919"}


id: PBO:0080567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat and FYVE domain containing 2","termid":"PBO:0080567"}


id: GO:1990866
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sustained stimulus indicating lowered oxygen tension.","definition_xrefs":["PMID:24055447"],"gene_count":0,"genotype_count":0,"name":"obsolete response to sustained hypoxia (obsolete GO:1990866)","termid":"GO:1990866"}


id: PBO:0012308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial transcriptional repressor protein BolA domain (predicted)","termid":"PBO:0012308"}


id: FYPO:0007585
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which septation initiation network signaling begins earlier than normal. Signaling may begin in interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:vw","PMID:19736319","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal septation initiation network signaling","termid":"FYPO:0007569"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000298","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"premature septation initiation network signaling","synonyms":[{"name":"advanced septation initiation network signaling","type":"exact"},{"name":"premature SIN signaling","type":"exact"},{"name":"premature septation initiation network signaling during mitotic cell cycle","type":"related"},{"name":"premature septation initiation network signaling during vegetative growth","type":"exact"},{"name":"premature septation initiation network signalling","type":"exact"},{"name":"premature septation initiation signaling","type":"exact"}],"termid":"FYPO:0007585"}


id: RO:HOM0000034
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Orthology that involves two genes when duplications more recent than the species split have occurred in one species but not the other.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_orthology_relationship_with","termid":"RO:HOM0000017"},{"relation_name":"is_a","term_name":"in_1_to_many_homology_relationship_with","termid":"RO:HOM0000037"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_1_to_many_orthology_relationship_with","synonyms":[{"name":"1 to many orthologous to","type":"exact"},{"name":"1:many orthology","type":"exact"},{"name":"co-orthology","type":"related"},{"name":"many to 1 orthology","type":"related"},{"name":"one-to-many orthology","type":"exact"}],"termid":"RO:HOM0000034"}


id: PATO:0001494
data:
  {"annotation_feature_type":"gene","cv_name":"quality","direct_ancestors":[{"relation_name":"is_a","term_name":"growth rate","termid":"PATO:0001492"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypotrophic growth","termid":"PATO:0001494"}


id: PBO:0080082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 44","termid":"PBO:0080082"}


id: PBO:0058080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4298","termid":"PBO:0058080"}


id: GO:2001276
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of L-leucine biosynthetic process.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of cellular amino acid biosynthetic process","termid":"GO:2000282"},{"relation_name":"regulates","term_name":"L-leucine biosynthetic process","termid":"GO:0009098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"regulation of L-leucine biosynthetic process","synonyms":[{"name":"regulation of L-leucine anabolism","type":"exact"},{"name":"regulation of L-leucine biosynthesis","type":"exact"},{"name":"regulation of L-leucine formation","type":"exact"},{"name":"regulation of L-leucine synthesis","type":"exact"},{"name":"regulation of leucine biosynthetic process","type":"broad"}],"termid":"GO:2001276"}


id: PBO:0026806
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_meiotic_DNA_double-strand_break_formation","termid":"PBO:0026806"}


id: PATO:0001213
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001213 mass_unit (obsolete PATO:0001213)","termid":"PATO:0001213"}


id: PATO:0000543
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000543 light intensivity sensitivity value (obsolete PATO:0000543)","termid":"PATO:0000543"}


id: PBO:0065340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prune homolog 2 with BCH domain","termid":"PBO:0065340"}


id: PATO:0000894
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000894 cytoplasmic sterility value (obsolete PATO:0000894)","termid":"PATO:0000894"}


id: PBO:0040649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAZ2B antisense RNA 1","termid":"PBO:0040649"}


id: MOD:00589
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-phenylalanine residue to (13)C,(15)N labeled L-phenylalanine.","definition_xrefs":["Unimod:269","PubMed:12771378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(13)C labeled residue","termid":"MOD:00842"},{"relation_name":"is_a","term_name":"(15)N labeled residue","termid":"MOD:00843"},{"relation_name":"is_a","term_name":"modified L-phenylalanine residue","termid":"MOD:00914"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1x(13)C,1x(15)N labeled L-phenylalanine","synonyms":[{"name":"13C(9) 15N(1) Silac label","type":"related"},{"name":"Label:13C(9)15N(1)","type":"related"}],"termid":"MOD:00589"}


id: GO:0160018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of platelet rolling.","definition_xrefs":["GOC:sl","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of heterotypic cell-cell adhesion","termid":"GO:0034116"},{"relation_name":"is_a","term_name":"regulation of platelet rolling","termid":"GO:0160017"},{"relation_name":"positively_regulates","term_name":"platelet rolling","termid":"GO:0160015"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"positive regulation of platelet rolling","termid":"GO:0160018"}


id: PR:000045539
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cyclin-dependent kinase 1 (Schizosaccharomyces pombe) that lacks phosphorylated residues.","definition_xrefs":["PMID:26131711","PomBase:MAH","PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent kinase 1 (Schizosaccharomyces pombe)","termid":"PR:000036301"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cdc2/PhosRes-","pombase_gene_id":"SPBC11B10.09","synonyms":[{"name":"Cdc2 unphosphorylated","type":"related"},{"name":"Cdc2 unphosphorylated form A","type":"narrow"},{"name":"Cdc2 unphosphorylated form B","type":"narrow"},{"name":"Cdc2-Ua","type":"narrow"},{"name":"Cdc2-Ub","type":"narrow"},{"name":"PomBase_original_PRO_term_name: cyclin-dependent kinase 1 unphosphorylated form (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-cdc2/PhosRes-","type":"exact"},{"name":"cdc2/PhosRes-","type":"exact"}],"termid":"PR:000045539"}


id: GO:0047268
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: raffinose + 1-alpha-D-galactosyl-myo-inositol = stachyose + myo-inositol.","definition_xrefs":["EC:2.4.1.67","MetaCyc:2.4.1.67-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactosyltransferase activity","termid":"GO:0008378"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0016757","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"galactinol-raffinose galactosyltransferase activity","secondary_identifiers":["RHEA:20776"],"synonyms":[{"name":"alpha-D-(1->3)-galactosyl-myo-inositol:raffinose galactosyltransferase activity","type":"related"},{"name":"stachyose synthetase activity","type":"related"}],"termid":"GO:0047268"}


id: GO:0008653
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving lipopolysaccharides, a group of related, structurally complex components of the outer membrane of Gram-negative bacteria. Lipopolysaccharides consist three covalently linked regions, lipid A, core oligosaccharide, and an O side chain. Lipid A is responsible for the toxicity of the lipopolysaccharide.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macromolecule metabolic process","termid":"GO:0043170"},{"relation_name":"is_a","term_name":"liposaccharide metabolic process","termid":"GO:1903509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"lipopolysaccharide metabolic process","synonyms":[{"name":"LPS metabolic process","type":"exact"},{"name":"lipopolysaccharide metabolism","type":"exact"}],"termid":"GO:0008653"}


id: GO:0110136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acquisition, loss, or modification of macromolecules within a protein-RNA complex, resulting in the alteration of an existing complex.","definition_xrefs":["PMID:20542003","PMID:19737519","GOC:rn","PMID:24240281"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex remodeling","termid":"GO:0034367"},{"relation_name":"is_a","term_name":"protein-RNA complex organization","termid":"GO:0071826"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein-RNA complex remodeling","synonyms":[{"name":"protein-RNA complex remodelling","type":"exact"}],"termid":"GO:0110136"}


id: PBO:0073535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain containing kinase binding protein 1","termid":"PBO:0073535"}


id: PBO:0028194
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_azetidine-2-carboxylic_acid_acetyltransferase_activity","termid":"PBO:0028194"}


id: GO:0018179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The desulfurization of peptidyl-L-cysteine to yield L-alanine and elemental sulfur; peptidyl-L-cysteine persulfide is an intermediate.","definition_xrefs":["RESID:AA0269"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-cysteine desulfurization (obsolete GO:0018179)","synonyms":[{"name":"peptidyl-cysteine desulfurization","type":"exact"},{"name":"peptidyl-cysteine desulphurization","type":"exact"}],"termid":"GO:0018179"}


id: PATO:0000797
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000797 urination value (obsolete PATO:0000797)","termid":"PATO:0000797"}


id: GO:0140022
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A giant secretory organelle that comprises a bulb-shape capsule containing a coiled hollow tubule structure attached to it. A cnida defines the phylum Cnidaria.","definition_xrefs":["Wikipedia:Cnida#Structure_and_function"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cnida","synonyms":[{"name":"cnidae (plural)","type":"exact"}],"termid":"GO:0140022"}


id: PBO:0052671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 39","termid":"PBO:0052671"}


id: GO:0061732
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate in the mitochondrion. The process begins with the transport of pyruvate from the cytosol to the mitochondrion where it is subsequently decarboxylated to form acetyl-CoA.","definition_xrefs":["GOC:dph","ISBN:0201090910"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial acetyl-CoA biosynthetic process from pyruvate (obsolete GO:0061732)","termid":"GO:0061732"}


id: PBO:0083537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF YBR131W; identified by gene-trapping, microarray analysis, and genome-wide homology searches","termid":"PBO:0083537"}


id: PBO:0051721
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"INSM transcriptional repressor 2","termid":"PBO:0051721"}


id: PBO:0055955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 69","termid":"PBO:0055955"}


id: PBO:0001089
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"previously annotated as gnr1 in error","termid":"PBO:0001089"}


id: SO:0001993
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Intronic positions associated with cis-splicing. Contains the first and second positions immediately before the exon and the first, second and fifth positions immediately after.","definition_xrefs":["SANGER:am"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cis_splice_site","termid":"SO:0001419"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extended_cis_splice_site","synonyms":[{"name":"extended cis splice site","type":"exact"}],"termid":"SO:0001993"}


id: GO:0034232
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of ascospore wall chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues, found in the walls of ascospores.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete ascospore wall chitin catabolic process (obsolete GO:0034232)","synonyms":[{"name":"ascospore wall chitin breakdown","type":"exact"},{"name":"ascospore wall chitin catabolism","type":"exact"},{"name":"ascospore wall chitin degradation","type":"exact"}],"termid":"GO:0034232"}


id: GO:0016176
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases the activity of the enzyme superoxide-generating NADPH oxidase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0140677","GO:0030234","GO:0003674","GO:0098772"],"is_obsolete":false,"name":"superoxide-generating NADPH oxidase activator activity","synonyms":[{"name":"neutrophil cytosol factor 2","type":"narrow"}],"termid":"GO:0016176"}


id: SO:0001669
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes.","definition_xrefs":["PMID:16858867"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNApol_II_promoter","termid":"SO:0000170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNApol_II_core_promoter","synonyms":[{"name":"RNApol II core promoter","type":"exact"}],"termid":"SO:0001669"}


id: PBO:0062198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily U member 1 pseudogene","termid":"PBO:0062198"}


id: GO:0016822
data:
  {"annotated_genes":["SJAG_00493"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[102901],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0018773"},{"annotations":[102902],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047621"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of any acid carbon-carbon bond.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity","termid":"GO:0016787"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00493":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"hydrolase activity, acting on acid carbon-carbon bonds","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:3.7.-.-"],"termid":"GO:0016822","terms_by_termid":{"GO:0018773":null,"GO:0047621":null}}


id: GO:0034741
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the tumor suppressor protein adenomatous polyposis coli (APC), alpha-tubulin, gamma-tubulin, and the Rac1 and Cdc42 effector IQGAP1; may play a role in cytoskeleton organization.","definition_xrefs":["PMID:17126424"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"GTPase complex","termid":"GO:1905360"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"APC-tubulin-IQGAP1 complex","synonyms":[{"name":"60S APC complex","type":"narrow"}],"termid":"GO:0034741"}


id: FYPO:0006129
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype in which the occurrence of nuclear migration involved in conjugation with cellular fusion is decreased.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete decreased nuclear migration during mating (obsolete FYPO:0006129)","synonyms":[{"name":"decreased nuclear migration involved in conjugation with cellular fusion","type":"exact"},{"name":"decreased nuclear movement during mating","type":"exact"},{"name":"decreased nuclear movement during shmooing","type":"related"},{"name":"reduced nuclear migration during mating","type":"exact"}],"termid":"FYPO:0006129"}


id: PBO:0040156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acid sensing ion channel subunit 2","termid":"PBO:0040156"}


id: RO:HOM0000047
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Historical homology that involves the chromosomes able to pair (synapse) during meiosis.","definition_xrefs":["ISBN:0195307615"],"direct_ancestors":[{"relation_name":"is_a","term_name":"in_historical_homology_relationship_with","termid":"RO:HOM0000007"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_chromosomal_homology_relationship_with","synonyms":[{"name":"chromosomal homologous to","type":"exact"}],"termid":"RO:HOM0000047"}


id: PBO:0001283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-ranBP","termid":"PBO:0001283"}


id: PBO:0001045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin-dependent protein Srb mediator subunit kinase Srb10","termid":"PBO:0001045"}


id: PBO:0049712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HAUS augmin like complex subunit 1","termid":"PBO:0049712"}


id: PBO:0069968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1263, pseudogene","termid":"PBO:0069968"}


id: GO:0035047
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The rotation of centrosomes and associated pronuclei in one-cell embryos such as those of Caenorhabditis elegans, occurring as a transition between pronuclear migration and pronuclear fusion.","definition_xrefs":["ISBN:087969307X","GOC:bf","PMID:10085292"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"cellular developmental process","termid":"GO:0048869"},{"relation_name":"part_of","term_name":"single fertilization","termid":"GO:0007338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"centrosomal and pronuclear rotation","termid":"GO:0035047"}


id: GO:0051503
data:
  {"annotated_genes":["SJAG_04328","SJAG_02050","SJAG_03452","SJAG_00612","SJAG_04325","SJAG_03334"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102825],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035348"},{"annotations":[98991,107022],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015866"},{"annotations":[107023],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015867"},{"annotations":[97487],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990554"},{"annotations":[97488],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990553"},{"annotations":[107024],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140021"},{"annotations":[107025,98992],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990544"},{"annotations":[86973],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990559"},{"annotations":[89028],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990549"}]},"cv_name":"biological_process","definition":"The directed movement of adenine nucleotides, ATP, ADP, and/or AMP, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleotide transport","termid":"GO:0015865"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00612":null,"SJAG_02050":null,"SJAG_03334":null,"SJAG_03452":null,"SJAG_04325":null,"SJAG_04328":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"adenine nucleotide transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0051503","terms_by_termid":{"GO:0015866":null,"GO:0015867":null,"GO:0035348":null,"GO:0140021":null,"GO:1990544":null,"GO:1990549":null,"GO:1990553":null,"GO:1990554":null,"GO:1990559":null}}


id: PR:Q9USM6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cytochrome b5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04489","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b5 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16A11.10c","secondary_identifiers":["UniProtKB:Q9USM6"],"synonyms":[{"name":"Spom972h-CYB5A","type":"exact"}],"termid":"PR:Q9USM6"}


id: GO:0008939
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5,6-dimethylbenzimidazole + nicotinate D-ribonucleotide = alpha-ribazole 5'-phosphate + H+ + nicotinate.","definition_xrefs":["RHEA:11196","EC:2.4.2.21"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity","secondary_identifiers":["MetaCyc:DMBPPRIBOSYLTRANS-RXN","KEGG_REACTION:R04148"],"synonyms":[{"name":"CobT","type":"related"},{"name":"N(1)-alpha-phosphoribosyltransferase activity","type":"related"},{"name":"N1-alpha-phosphoribosyltransferase activity","type":"related"},{"name":"nicotinate mononucleotide (NaMN):5,6-dimethylbenzimidazole phosphoribosyltransferase activity","type":"related"},{"name":"nicotinate mononucleotide-dimethylbenzimidazole phosphoribosyltransferase activity","type":"related"},{"name":"nicotinate ribonucleotide:benzimidazole (adenine) phosphoribosyltransferase activity","type":"related"},{"name":"nicotinate-nucleotide:5,6-dimethylbenzimidazole phospho-D-ribosyltransferase activity","type":"related"},{"name":"nicotinate-nucleotide:dimethylbenzimidazole phospho-D-ribosyltransferase activity","type":"related"}],"termid":"GO:0008939"}


id: FYPO:0003253
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of one or more amino acids into the cell is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal amino acid import during vegetative growth","termid":"FYPO:0001361"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abolished amino acid import during vegetative growth","synonyms":[{"name":"abolished amino acid import across plasma membrane during vegetative growth","type":"exact"},{"name":"abolished amino acid import during mitotic cell cycle","type":"related"},{"name":"abolished amino acid import into cell","type":"exact"},{"name":"abolished amino acid uptake","type":"exact"},{"name":"amino acid import abolished","type":"exact"}],"termid":"FYPO:0003253"}


id: GO:1900498
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of butyryl-CoA catabolic process to butanol.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular catabolic process","termid":"GO:0031330"},{"relation_name":"is_a","term_name":"negative regulation of purine nucleotide catabolic process","termid":"GO:0033122"},{"relation_name":"is_a","term_name":"negative regulation of amide metabolic process","termid":"GO:0034249"},{"relation_name":"is_a","term_name":"negative regulation of fatty acid metabolic process","termid":"GO:0045922"},{"relation_name":"is_a","term_name":"negative regulation of lipid catabolic process","termid":"GO:0050995"},{"relation_name":"is_a","term_name":"negative regulation of lipid biosynthetic process","termid":"GO:0051055"},{"relation_name":"is_a","term_name":"negative regulation of sulfur metabolic process","termid":"GO:0051175"},{"relation_name":"is_a","term_name":"regulation of butyryl-CoA catabolic process to butanol","termid":"GO:1900497"},{"relation_name":"is_a","term_name":"negative regulation of alcohol biosynthetic process","termid":"GO:1902931"},{"relation_name":"negatively_regulates","term_name":"butyryl-CoA catabolic process to butanol","termid":"GO:0044582"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"negatively_regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0006790"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044248","GO:0006629","GO:0008150","GO:0006790","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"negative regulation of butyryl-CoA catabolic process to butanol","synonyms":[{"name":"down regulation of butyryl-CoA catabolic process to butanol","type":"exact"},{"name":"down regulation of butyryl-CoA catabolism to butanol","type":"exact"},{"name":"down-regulation of butyryl-CoA catabolic process to butanol","type":"exact"},{"name":"down-regulation of butyryl-CoA catabolism to butanol","type":"exact"},{"name":"downregulation of butyryl-CoA catabolic process to butanol","type":"exact"},{"name":"downregulation of butyryl-CoA catabolism to butanol","type":"exact"},{"name":"inhibition of butyryl-CoA catabolic process to butanol","type":"narrow"},{"name":"inhibition of butyryl-CoA catabolism to butanol","type":"exact"},{"name":"negative regulation of butyryl-CoA catabolism to butanol","type":"exact"}],"termid":"GO:1900498"}


id: GO:0051491
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the assembly of a filopodium, a thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone.","definition_xrefs":["GOC:dph","GOC:ai","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of filopodium assembly","termid":"GO:0051489"},{"relation_name":"is_a","term_name":"positive regulation of plasma membrane bounded cell projection assembly","termid":"GO:0120034"},{"relation_name":"positively_regulates","term_name":"filopodium assembly","termid":"GO:0046847"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of filopodium assembly","synonyms":[{"name":"activation of filopodium formation","type":"narrow"},{"name":"positive regulation of filopodia biosynthesis","type":"exact"},{"name":"positive regulation of filopodia formation","type":"exact"},{"name":"positive regulation of filopodium formation","type":"exact"},{"name":"stimulation of filopodium formation","type":"narrow"},{"name":"up regulation of filopodium formation","type":"exact"},{"name":"up-regulation of filopodium formation","type":"exact"},{"name":"upregulation of filopodium formation","type":"exact"}],"termid":"GO:0051491"}


id: GO:0039503
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the innate immune response of the host organism, the host's first line of defense.","definition_xrefs":["GOC:bf","GOC:sp","UniProtKB-KW:KW-1090","GOC:add"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host innate immune response (obsolete GO:0039503)","synonyms":[{"name":"inhibition of host innate immune response by virus","type":"exact"},{"name":"negative regulation by virus of host innate immune response","type":"exact"},{"name":"negative regulation by virus of host innate immunity","type":"exact"},{"name":"suppression by virus of host innate immunity","type":"exact"}],"termid":"GO:0039503"}


id: GO:0089719
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an RHG (reaper/hid/grimm) domain/motif (AKA iap binding motif).","definition_xrefs":["GOC:ha","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"RHG protein domain binding","synonyms":[{"name":"RHG domain binding","type":"exact"},{"name":"iap binding domain binding","type":"exact"},{"name":"inhibitor of apoptosis binding domain binding","type":"exact"},{"name":"reaper hid grim domain binding","type":"exact"}],"termid":"GO:0089719"}


id: PBO:0108983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm microtubule inner protein 7","termid":"PBO:0108983"}


id: PBO:0000616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase Prh1 (predicted)","termid":"PBO:0000616"}


id: PBO:0039246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldehyde dehydrogenase 1 family member L1","termid":"PBO:0039246"}


id: PBO:0043671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"corin, serine peptidase","termid":"PBO:0043671"}


id: PBO:0030500
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_DNA_damage_checkpoint","termid":"PBO:0030500"}


id: GO:0060285
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell motility due to the motion of one or more eukaryotic cilia. A eukaryotic cilium is a specialized organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole.","definition_xrefs":["GOC:krc","GOC:mtg_cambridge_2013","GOC:cilia","GOC:dph","GOC:dgh","GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cilium or flagellum-dependent cell motility","termid":"GO:0001539"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cilium-dependent cell motility","secondary_identifiers":["GO:0071974"],"synonyms":[{"name":"ciliary cell motility","type":"related"},{"name":"cilium cell motility","type":"exact"},{"name":"microtubule-based flagellar cell motility","type":"exact"}],"termid":"GO:0060285"}


id: PATO:0000450
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000450 low percentage (obsolete PATO:0000450)","termid":"PATO:0000450"}


id: PR:Q9Y7M3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC9B6.03 gene.","definition_xrefs":["UniProtKB:Q9Y7M3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FYVE-type zinc finger-containing protein C9B6.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC9B6.03","synonyms":[{"name":"Spom972h-SPBC9B6.03","type":"exact"}],"termid":"PR:Q9Y7M3"}


id: FYPO:0002494
data:
  {"alleles_by_uniquename":{"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_01787:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01787","name":"pck1delta","uniquename":"SJAG_01787:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_03940:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03940","name":"nem2delta","uniquename":"SJAG_03940:allele-1"},"SJAG_04551:allele-2":{"allele_type":"amino_acid_insertion","description":"82-NITCIYDLDIIINPYNFNEVYIYEE-105","gene_uniquename":"SJAG_04551","name":"Pmk1Sj(ins82-105)","uniquename":"SJAG_04551:allele-2"},"SJAG_04551:allele-4":{"allele_type":"partial_amino_acid_deletion","description":"Pmk1 from S. pombe with deleted residues 82-105","gene_uniquename":"SJAG_04551","name":"Pmk1Sp(delta82-105)","uniquename":"SJAG_04551:allele-4"},"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115258,115266],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002678"},{"annotations":[115265],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002033"},{"annotations":[115715],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0005957"},{"annotations":[115261,115257],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001838"},{"annotations":[115364],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0003727"},{"annotations":[115254],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002680"},{"annotations":[115251],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001038"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which protein modification is abnormal. All modifications may be affected, or only modifications of a certain type, or on specific proteins, or even specific sites within specific proteins.","definition_xrefs":["PomBase:mah","GO:0030163"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein metabolic process","termid":"FYPO:0002274"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00610":null,"SJAG_01787":null,"SJAG_02592":null,"SJAG_02763":null,"SJAG_03940":null,"SJAG_04551":null,"SJAG_04697":null},"genotype_count":7,"genotypes_by_uniquename":{"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sj(ins82-105)(82-NITCIYDLDIIINPYNFNEVYIYEE-105)","display_uniquename":"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-2","expression":"Not assayed or wild type"}]}]},"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sp(delta82-105)(Pmk1 from S. pombe with deleted residues 82-105 Δaa)","display_uniquename":"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-4","expression":"Not assayed or wild type"}]}]},"gms1delta":{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]},"nem2delta":{"display_name":"nem2delta","display_uniquename":"nem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03940:allele-1","expression":"Null"}]}]},"pck1delta":{"display_name":"pck1delta","display_uniquename":"pck1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]}]},"pck2delta":{"display_name":"pck2delta","display_uniquename":"pck2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00610:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"in_subsets":["fypo_slim"],"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002274","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein modification","references_by_uniquename":{"PMID:26774782":null,"PMID:34198697":null,"PMID:36058798":null},"single_locus_annotated_genes":["SJAG_00610","SJAG_02592","SJAG_04551","SJAG_03940","SJAG_01787","SJAG_04697"],"single_locus_genotype_uniquenames":["pck1delta","nem2delta","Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","gms1delta","sty1delta","Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","pck2delta"],"termid":"FYPO:0002494","terms_by_termid":{"FYECO:0000207":null,"FYPO:0001038":null,"FYPO:0001838":null,"FYPO:0002033":null,"FYPO:0002678":null,"FYPO:0002680":null,"FYPO:0003727":null,"FYPO:0005957":null,"FYPO_EXT:0000001":null}}


id: PBO:0060776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B8 pseudogene 2","termid":"PBO:0060776"}


id: PBO:0052821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 87, pseudogene","termid":"PBO:0052821"}


id: PBO:0112842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol N-acetylglucosaminyltransferase subunit pig-Q, Gpi1","termid":"PBO:0112842"}


id: GO:0030919
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acetylation of peptidyl-serine to form peptidyl-O-acetyl-L-serine.","definition_xrefs":["PMID:7309355","PMID:489587","RESID:AA0364"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-serine modification","termid":"GO:0018209"},{"relation_name":"is_a","term_name":"peptidyl-serine acetylation","termid":"GO:0030920"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-serine O-acetylation","termid":"GO:0030919"}


id: PBO:0042318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD37 molecule","termid":"PBO:0042318"}


id: PBO:0074744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 104","termid":"PBO:0074744"}


id: PBO:0065175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prominin 1","termid":"PBO:0065175"}


id: PBO:0068594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 45, pseudogene","termid":"PBO:0068594"}


id: PR:O14107
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- dni1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14107"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell fusion protein dni1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31G5.07","synonyms":[{"name":"Spom972h-dni1","type":"exact"},{"name":"delayed minus-nitrogen induction protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14107"}


id: PBO:0045392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPP10 antisense RNA 3","termid":"PBO:0045392"}


id: GO:0009791
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"},{"relation_name":"part_of","term_name":"multicellular organism development","termid":"GO:0007275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"post-embryonic development","termid":"GO:0009791"}


id: PR:P87230
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04325","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4G3.04c","secondary_identifiers":["UniProtKB:P87230"],"synonyms":[{"name":"Spom972h-COQ5","type":"exact"},{"name":"ubiquinone biosynthesis methyltransferase COQ5 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87230"}


id: PBO:0013002
data:
  {"annotation_feature_type":"gene","cv_name":"feature_relationshipprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"curator_name","termid":"PBO:0013002"}


id: GO:0141029
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont alters or subverts focal adhesion in its host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:24905543","PMID:24573681","PMID:19489119"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host cellular process","termid":"GO:0044068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated disruption of host focal adhesion","synonyms":[{"name":"disruption by symbiont of host focal adhesion","type":"exact"}],"termid":"GO:0141029"}


id: PBO:0061904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"opiorphin prepropeptide","termid":"PBO:0061904"}


id: GO:0102170
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (+)-5-epi-aristolochene + 2 NADPH + 2 H+ + 2 O2 = capsidiol + 2 NADP + 2 H2O.","definition_xrefs":["EC:1.14.14.149","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"5-epi-aristolochene-1,3-dihydroxylase activity","secondary_identifiers":["MetaCyc:RXN-11908","RHEA:28226"],"termid":"GO:0102170"}


id: PR:O74851
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- adg3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74851"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secreted beta-glucosidase adg3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC18.01c","synonyms":[{"name":"Spom972h-adg3","type":"exact"}],"termid":"PR:O74851"}


id: PBO:0056395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAPRE1 pseudogene 2","termid":"PBO:0056395"}


id: GO:1900310
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of maltoheptaose metabolic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of carbohydrate metabolic process","termid":"GO:0045912"},{"relation_name":"is_a","term_name":"regulation of maltoheptaose metabolic process","termid":"GO:1900309"},{"relation_name":"negatively_regulates","term_name":"maltoheptaose metabolic process","termid":"GO:2001122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"negative regulation of maltoheptaose metabolic process","synonyms":[{"name":"down regulation of maltoheptaose metabolic process","type":"exact"},{"name":"down regulation of maltoheptaose metabolism","type":"exact"},{"name":"down-regulation of maltoheptaose metabolic process","type":"exact"},{"name":"down-regulation of maltoheptaose metabolism","type":"exact"},{"name":"downregulation of maltoheptaose metabolic process","type":"exact"},{"name":"downregulation of maltoheptaose metabolism","type":"exact"},{"name":"inhibition of maltoheptaose metabolic process","type":"narrow"},{"name":"inhibition of maltoheptaose metabolism","type":"narrow"},{"name":"negative regulation of maltoheptaose metabolism","type":"exact"}],"termid":"GO:1900310"}


id: GO:0071803
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of podosome assembly.","definition_xrefs":["GOC:mah","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein-containing complex assembly","termid":"GO:0031334"},{"relation_name":"is_a","term_name":"regulation of podosome assembly","termid":"GO:0071801"},{"relation_name":"is_a","term_name":"positive regulation of organelle assembly","termid":"GO:1902117"},{"relation_name":"positively_regulates","term_name":"podosome assembly","termid":"GO:0071800"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0065003"],"is_obsolete":false,"name":"positive regulation of podosome assembly","synonyms":[{"name":"activation of podosome assembly","type":"narrow"},{"name":"stimulation of podosome assembly","type":"narrow"},{"name":"up regulation of podosome assembly","type":"exact"},{"name":"up-regulation of podosome assembly","type":"exact"},{"name":"upregulation of podosome assembly","type":"exact"}],"termid":"GO:0071803"}


id: PR:O74338
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- blt1 gene.","definition_xrefs":["UniProtKB:O74338","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitosis inducer protein blt1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1A4.05","synonyms":[{"name":"Spom972h-blt1","type":"exact"}],"termid":"PR:O74338"}


id: GO:0018712
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-hydroxy-5-oxohexanoyl-CoA + CoASH = 3-hydroxybutyryl-CoA + acetyl-CoA.","definition_xrefs":["UM-BBD_reactionID:r0010"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016746","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"3-hydroxybutyryl-CoA thiolase activity","secondary_identifiers":["MetaCyc:R7-RXN"],"termid":"GO:0018712"}


id: GO:0045771
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces autophagosome size.","definition_xrefs":["GOC:go_curators","GOC:autophagy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of autophagosome size","termid":"GO:0016243"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006914"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0006914"],"is_obsolete":false,"name":"negative regulation of autophagosome size","synonyms":[{"name":"down regulation of autophagic vacuole size","type":"exact"},{"name":"down-regulation of autophagic vacuole size","type":"exact"},{"name":"downregulation of autophagic vacuole size","type":"exact"},{"name":"inhibition of autophagic vacuole size","type":"narrow"},{"name":"negative regulation of autophagic vacuole size","type":"exact"}],"termid":"GO:0045771"}


id: GO:0050971
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events involved in magnetoception in which a mechanical stimulus is received and converted into a molecular signal. The stimulus is in the form of torque on particles such as magnetite which respond to a magnetic field.","definition_xrefs":["GOC:dos","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of mechanical stimulus involved in sensory perception","termid":"GO:0050974"},{"relation_name":"part_of","term_name":"magnetoreception by sensory perception of mechanical stimulus","termid":"GO:0050979"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of mechanical stimulus involved in magnetoreception","synonyms":[{"name":"magnetoception, sensory transduction of mechanical stimulus","type":"exact"},{"name":"magnetoreception, detection of mechanical stimulus","type":"exact"},{"name":"magnetoreception, sensory detection of mechanical stimulus","type":"exact"},{"name":"magnetoreception, sensory transduction of mechanical stimulus","type":"exact"},{"name":"sensory detection of mechanical stimulus during magnetoreception","type":"exact"},{"name":"sensory transduction of mechanical stimulus during magnetoreception","type":"exact"}],"termid":"GO:0050971"}


id: PBO:0071934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S4X pseudogene 11","termid":"PBO:0071934"}


id: PBO:0090770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF34 family protein","termid":"PBO:0090770"}


id: FYPO:0001188
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to Calcofluor White. Cells stop growing (and may die) at a concentration of Calcofluor White that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002683","FYPO:0000139","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to Calcofluor White","synonyms":[{"name":"hypersensitive to Calcofluor White","type":"exact"},{"name":"sensitive to Calcofluor White during mitotic cell cycle","type":"related"},{"name":"sensitive to Calcofluor White during vegetative growth","type":"exact"}],"termid":"FYPO:0001188"}


id: GO:0010065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the primary meristem over time, from formation to the mature structure, as it occurs during plant embryogenesis. The primary meristem tissue is the protoderm, ground meristem and procambium.","definition_xrefs":["GOC:tb","ISBN:0471245208"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic meristem development","termid":"GO:0048508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"primary meristem tissue development","synonyms":[{"name":"primary meristem histogenesis","type":"exact"}],"termid":"GO:0010065"}


id: GO:0060176
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of aggregation during sorocarp development. Aggregation involved in sorocarp development is the process whose specific outcome is the progression of the aggregate over time, from its formation to the point when a slug is formed. Aggregate development begins in response to starvation and continues by the chemoattractant-mediated movement of cells toward each other. The aggregate is a multicellular structure that gives rise to the slug.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to nutrient levels","termid":"GO:0032107"},{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"is_a","term_name":"regulation of cellular response to stress","termid":"GO:0080135"},{"relation_name":"regulates","term_name":"aggregation involved in sorocarp development","termid":"GO:0031152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of aggregation involved in sorocarp development","termid":"GO:0060176"}


id: FYPO:0003215
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of one protein to another is normal (i.e. indistinguishable from wild type) during a cellular response to hydrogen peroxide. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein-protein interaction","termid":"FYPO:0000703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000702"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000702","FYPO:0000257"],"is_obsolete":false,"name":"normal protein-protein interaction during cellular response to hydrogen peroxide","synonyms":[{"name":"normal protein binding during cellular response to hydrogen peroxide","type":"exact"},{"name":"normal protein-protein interaction during cellular response to H2O2","type":"exact"}],"termid":"FYPO:0003215"}


id: PBO:0058292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4666b","termid":"PBO:0058292"}


id: PBO:0060395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEDD4 binding protein 1","termid":"PBO:0060395"}


id: PBO:0079911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 pseudogene 1","termid":"PBO:0079911"}


id: PBO:0086768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; similar to the mouse IMPACT gene; YDL177C is not an essential gene","termid":"PBO:0086768"}


id: PBO:0083968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glucoamylase (glucan 1,4-alpha-glucosidase); allows yeast to degrade starch","termid":"PBO:0083968"}


id: PBO:0061285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear pore associated protein 1 pseudogene 6","termid":"PBO:0061285"}


id: GO:0009939
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of gibberellic acid mediated signaling activity.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gibberellic acid mediated signaling pathway","termid":"GO:0009937"},{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"positively_regulates","term_name":"gibberellic acid mediated signaling pathway","termid":"GO:0009740"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of gibberellic acid mediated signaling pathway","synonyms":[{"name":"activation of gibberellic acid mediated signaling","type":"narrow"},{"name":"positive regulation of gibberellic acid mediated signalling","type":"exact"},{"name":"stimulation of gibberellic acid mediated signaling","type":"narrow"},{"name":"up regulation of gibberellic acid mediated signaling","type":"exact"},{"name":"up-regulation of gibberellic acid mediated signaling","type":"exact"},{"name":"upregulation of gibberellic acid mediated signaling","type":"exact"}],"termid":"GO:0009939"}


id: PBO:0061988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily B member 8 pseudogene","termid":"PBO:0061988"}


id: PBO:0086934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rab family GTPase; involved in the exocytic pathway; mediates intra-Golgi traffic or the budding of post-Golgi vesicles from the trans-Golgi; YPT31 has a paralog, YPT32, that arose from the whole genome duplication; localizes to the transitional and late Golgi","termid":"PBO:0086934"}


id: PBO:0042197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin E1","termid":"PBO:0042197"}


id: PBO:0068171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 478","termid":"PBO:0068171"}


id: GO:0046003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate or extent of progression through the syncytial blastoderm mitotic cell cycle.","definition_xrefs":["GOC:dph","GOC:go_curators","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of syncytial blastoderm mitotic cell cycle","termid":"GO:0007348"},{"relation_name":"is_a","term_name":"negative regulation of mitotic cell cycle, embryonic","termid":"GO:0045976"},{"relation_name":"negatively_regulates","term_name":"syncytial blastoderm mitotic cell cycle","termid":"GO:0035186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"negative regulation of syncytial blastoderm mitotic cell cycle","synonyms":[{"name":"down regulation of progression through syncytial blastoderm mitotic cell cycle","type":"exact"},{"name":"down-regulation of progression through syncytial blastoderm mitotic cell cycle","type":"exact"},{"name":"downregulation of progression through syncytial blastoderm mitotic cell cycle","type":"exact"},{"name":"inhibition of progression through syncytial blastoderm mitotic cell cycle","type":"narrow"},{"name":"negative regulation of progression through syncytial blastoderm mitotic cell cycle","type":"exact"},{"name":"negative regulation of syncytial blastoderm cell cycle progression","type":"exact"}],"termid":"GO:0046003"}


id: PBO:0055896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 17","termid":"PBO:0055896"}


id: PBO:0067663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 841, pseudogene","termid":"PBO:0067663"}


id: PBO:0081455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 322","termid":"PBO:0081455"}


id: PBO:0051575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 17D","termid":"PBO:0051575"}


id: PBO:0003562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase epsilon subunit Dpb4","termid":"PBO:0003562"}


id: PBO:0048254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactose-3-O-sulfotransferase 2","termid":"PBO:0048254"}


id: PBO:0051537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 5","termid":"PBO:0051537"}


id: GO:0052512
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The increase by an organism of the levels of hormones or growth regulators in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by organism of hormone or growth regulator levels in symbiont (obsolete GO:0052512)","synonyms":[{"name":"positive modulation of hormone or growth regulator levels in symbiont","type":"exact"},{"name":"positive regulation by organism of hormone or growth regulator levels in symbiont","type":"exact"}],"termid":"GO:0052512"}


id: PBO:0086057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function that associates with ribosomes; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and bud; not an essential gene; protein abundance increases in response to DNA replication stress; YMR295C has a paralog, YGR273C, that arose from the whole genome duplication","termid":"PBO:0086057"}


id: GO:0007026
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of microtubule depolymerization; prevention of depolymerization of a microtubule can result from binding by 'capping' at the plus end (e.g. by interaction with another cellular protein of structure) or by exposing microtubules to a stabilizing drug such as taxol.","definition_xrefs":["GOC:mah","ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of microtubule polymerization or depolymerization","termid":"GO:0031111"},{"relation_name":"is_a","term_name":"regulation of microtubule depolymerization","termid":"GO:0031114"},{"relation_name":"is_a","term_name":"negative regulation of protein depolymerization","termid":"GO:1901880"},{"relation_name":"is_a","term_name":"negative regulation of supramolecular fiber organization","termid":"GO:1902904"},{"relation_name":"negatively_regulates","term_name":"microtubule depolymerization","termid":"GO:0007019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0000226"},{"rel_name":"negatively_regulates","termid":"GO:0000226"},{"rel_name":"negatively_regulates","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0007010","GO:0008150","GO:0000226"],"is_obsolete":false,"name":"negative regulation of microtubule depolymerization","synonyms":[{"name":"down regulation of microtubule depolymerization","type":"exact"},{"name":"down-regulation of microtubule depolymerization","type":"exact"},{"name":"downregulation of microtubule depolymerization","type":"exact"},{"name":"inhibition of microtubule depolymerization","type":"narrow"},{"name":"microtubule rescue","type":"narrow"},{"name":"microtubule stabilization","type":"exact"},{"name":"negative regulation of microtubule catastrophe","type":"narrow"},{"name":"negative regulation of microtubule disassembly","type":"exact"}],"termid":"GO:0007026"}


id: GO:0060235
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Signaling at short range between the head ectoderm and the optic vesicle that results in the head ectoderm forming a lens.","definition_xrefs":["ISBN:0878932437","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental induction","termid":"GO:0031128"},{"relation_name":"part_of","term_name":"lens morphogenesis in camera-type eye","termid":"GO:0002089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lens induction in camera-type eye","termid":"GO:0060235"}


id: PBO:0109000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CATSPER2 pseudogene 1","termid":"PBO:0109000"}


id: GO:0042314
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to bacteriochlorophyll, a form of chlorophyll found in photosynthetic bacteria, such as the purple and green bacteria. There are several types, designated a to g. Bacteriochlorophyll a and bacteriochlorophyll b are structurally similar to the chlorophyll a and chlorophyll b found in plants.","definition_xrefs":["ISBN:0192800981"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chlorophyll binding","termid":"GO:0016168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"bacteriochlorophyll binding","termid":"GO:0042314"}


id: GO:0075120
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont interferes with, inhibits or disrupts a G protein-coupled receptor signal transduction in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:17562776","GOC:pamgo_curators","PMID:23027529"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host G protein-coupled receptor signal transduction pathway","termid":"GO:0075118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host G protein-coupled receptor signal transduction","secondary_identifiers":["GO:0075123","GO:0075126","GO:0075129"],"synonyms":[{"name":"disruption of host G protein-coupled receptor signal transduction","type":"exact"},{"name":"negative regulation by symbiont of host G protein-coupled receptor signal transduction","type":"exact"},{"name":"negative regulation by symbiont of host G-protein coupled receptor protein signal transduction","type":"exact"},{"name":"negative regulation by symbiont of host signal transduction mediated by G-protein alpha subunit","type":"narrow"},{"name":"negative regulation by symbiont of host signal transduction mediated by G-protein beta subunit","type":"narrow"},{"name":"negative regulation by symbiont of host signal transduction mediated by G-protein gamma subunit","type":"narrow"},{"name":"suppression by symbiont of host G protein-coupled receptor signal transduction","type":"exact"}],"termid":"GO:0075120"}


id: PBO:0028255
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_ornithine_carbamoyltransferase_activity","termid":"PBO:0028255"}


id: PBO:0013786
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-glycoside alpha1,2-Mannosyltransferase Homolog","termid":"PBO:0013786"}


id: GO:0140762
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a quinone + D-glucose = a quinol + D-glucono-1,5-lactone.","definition_xrefs":["RHEA:47372"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucose dehydrogenase activity","termid":"GO:0004344"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor","termid":"GO:0016901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"glucose dehydrogenase (FAD, quinone) activity","secondary_identifiers":["EC:1.1.5.9","MetaCyc:GLUCOSE-DEHYDROGENASE-ACCEPTOR-RXN"],"termid":"GO:0140762"}


id: GO:0015561
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: rhamnose(out) + H+(out) = rhamnose(in) + H+(in).","definition_xrefs":["TC:2.A.7.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose:proton symporter activity","termid":"GO:0009679"},{"relation_name":"is_a","term_name":"rhamnose transmembrane transporter activity","termid":"GO:0015153"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"rhamnose:proton symporter activity","synonyms":[{"name":"rhamnose:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015561"}


id: PBO:0027218
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cytosolic_half-mer_polysome_level","termid":"PBO:0027218"}


id: PBO:0017060
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biased repeat containing protein - 6 copies of 'WKKAREEDKAE' repeat and 6 copies of a smaller 'WRNSMDE' repeat","termid":"PBO:0017060"}


id: PBO:0072656
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retrotransposon Gag like 8C","termid":"PBO:0072656"}


id: PBO:0085756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein kinase involved in cell proliferation in response to nutrients; glucose-repressible; involved in signal transduction during cell proliferation in response to nutrients, specifically the establishment of stationary phase; identified as a regulator of IME2; phosphorylates Igo1p and Igo2p; substrate of Pho80p-Pho85p kinase","termid":"PBO:0085756"}


id: PBO:0086692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; induced by treatment with 8-methoxypsoralen and UVA irradiation; null mutant is sensitive to expression of the top1-T722A allele; SWAT-GFP and mCherry fusion proteins localize to the cell periphery and vacuole; TDA6 has a paralog, VPS62, that arose from the whole genome duplication","termid":"PBO:0086692"}


id: GO:0019241
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of citrulline, N5-carbamoyl-L-ornithine, an alpha amino acid not found in proteins.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"citrulline metabolic process","termid":"GO:0000052"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid catabolic process","termid":"GO:0170044"},{"relation_name":"is_a","term_name":"alpha-amino acid catabolic process","termid":"GO:1901606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"citrulline catabolic process","secondary_identifiers":["MetaCyc:CITRULLINE-DEG-PWY"],"synonyms":[{"name":"citrulline breakdown","type":"exact"},{"name":"citrulline catabolism","type":"exact"},{"name":"citrulline degradation","type":"exact"}],"termid":"GO:0019241"}


id: GO:0032026
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnesium ion stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to metal ion","termid":"GO:0010038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to magnesium ion","termid":"GO:0032026"}


id: PBO:0085888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; involved in negative regulation of expression of spliceosome components PRP4 and PRP3; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0085888"}


id: GO:0000153
data:
  {"annotated_genes":["SJAG_03841","SJAG_05274","SJAG_01134","SJAG_04384","SJAG_01051","SJAG_03345","SJAG_01709"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[113274,100102,100935,85408,101412,103803,105696],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000836"}]},"cv_name":"cellular_component","definition":"A ubiquitin ligase complex found in the cytoplasm.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin ligase complex","termid":"GO:0000151"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01051":null,"SJAG_01134":null,"SJAG_01709":null,"SJAG_03345":null,"SJAG_03841":null,"SJAG_04384":null,"SJAG_05274":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"cytoplasmic ubiquitin ligase complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0000153","terms_by_termid":{"GO:0000836":null}}


id: PBO:0055528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2963","termid":"PBO:0055528"}


id: GO:2000112
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of cellular macromolecule biosynthetic process.","definition_xrefs":["GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cellular macromolecule biosynthetic process (obsolete GO:2000112)","synonyms":[{"name":"regulation of cellular biopolymer biosynthetic process","type":"exact"},{"name":"regulation of cellular macromolecule anabolism","type":"exact"},{"name":"regulation of cellular macromolecule biosynthesis","type":"exact"},{"name":"regulation of cellular macromolecule formation","type":"exact"},{"name":"regulation of cellular macromolecule synthesis","type":"exact"}],"termid":"GO:2000112"}


id: PBO:0066756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 54","termid":"PBO:0066756"}


id: PBO:0091388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosome assembly protein Rrg9","termid":"PBO:0091388"}


id: GO:0047400
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + phosphonoacetate = acetate + H+ + phosphate.","definition_xrefs":["RHEA:16749"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid carbon-phosphorus bonds","termid":"GO:0016827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"phosphonoacetate hydrolase activity","secondary_identifiers":["EC:3.11.1.2","MetaCyc:3.11.1.2-RXN","KEGG_REACTION:R00318"],"synonyms":[{"name":"phosphonoacetate phosphonohydrolase activity","type":"related"}],"termid":"GO:0047400"}


id: PBO:0011992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Rrp14 (predicted)","termid":"PBO:0011992"}


id: GO:1902394
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of exodeoxyribonuclease activity.","definition_xrefs":["GOC:jl","PMID:1234","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of deoxyribonuclease activity","termid":"GO:0032077"},{"relation_name":"is_a","term_name":"regulation of exodeoxyribonuclease activity","termid":"GO:1902392"},{"relation_name":"is_a","term_name":"positive regulation of exonuclease activity","termid":"GO:1905779"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"positive regulation of exodeoxyribonuclease activity","synonyms":[{"name":"activation of exodeoxyribonuclease activity","type":"narrow"},{"name":"up regulation of exodeoxyribonuclease activity","type":"exact"},{"name":"up-regulation of exodeoxyribonuclease activity","type":"exact"},{"name":"upregulation of exodeoxyribonuclease activity","type":"exact"}],"termid":"GO:1902394"}


id: PBO:0028213
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_phosphorylation_during_cellular_response_to_arsenic-containing_substance","termid":"PBO:0028213"}


id: GO:0060328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The actin filament-based movement by which cytoplasmic actin filaments slide past one another resulting in a contraction that propels the cell in the direction that has been defined as the front of the cell.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic actin-based contraction involved in cell motility","termid":"GO:0060327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cytoplasmic actin-based contraction involved in forward cell motility","synonyms":[{"name":"cytoplasmic actin-based contraction involved in forward cell locomotion","type":"related"}],"termid":"GO:0060328"}


id: PBO:0041570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 20 putative open reading frame 181","termid":"PBO:0041570"}


id: GO:0099639
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of neurotransmitter receptor from the endosome to the plasma membrane in transport vesicles.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurotransmitter receptor transport to plasma membrane","termid":"GO:0098877"},{"relation_name":"is_a","term_name":"endosome to plasma membrane protein transport","termid":"GO:0099638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"neurotransmitter receptor transport, endosome to plasma membrane","termid":"GO:0099639"}


id: FYPO:0005688
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, and morphology of astral microtubules is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cytoplasmic microtubules during vegetative growth","termid":"FYPO:0001976"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal astral microtubules","synonyms":[{"name":"normal astral microtubules during mitotic cell cycle","type":"related"},{"name":"normal astral microtubules during vegetative growth","type":"exact"},{"name":"normal cytoplasmic astral microtubules","type":"exact"}],"termid":"FYPO:0005688"}


id: GO:0035821
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change in the structure or processes of another organism.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological process involved in interspecies interaction between organisms","termid":"GO:0044419"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation of process of another organism","synonyms":[{"name":"modification of morphology or physiology of other organism","type":"exact"},{"name":"modulation of process of other organism","type":"exact"},{"name":"regulation of morphology of other organism","type":"narrow"},{"name":"regulation of morphology or physiology of other organism","type":"related"},{"name":"regulation of physiological process of other organism","type":"narrow"},{"name":"regulation of physiology of other organism","type":"narrow"}],"termid":"GO:0035821"}


id: PBO:0078544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 36","termid":"PBO:0078544"}


id: FYPO:0006222
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of one or more phosphatidylinositol phosphates measured in the plasma membrane is higher than normal when the cell is in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal plasma membrane during vegetative growth","termid":"FYPO:0003278"},{"relation_name":"is_a","term_name":"decreased cellular phosphoinositide level","termid":"FYPO:0005588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased phosphatidylinositol phosphate level in plasma membrane","synonyms":[{"name":"decreased phosphatidylinositol phosphate level in cell membrane during vegetative growth","type":"exact"},{"name":"decreased phosphatidylinositol phosphate level in plasma membrane during mitotic cell cycle","type":"related"},{"name":"decreased phosphatidylinositol phosphate level in plasma membrane during vegetative growth","type":"exact"},{"name":"decreased plasma membrane phosphatidylinositol phosphate level during vegetative growth","type":"exact"},{"name":"reduced phosphatidylinositol phosphate level in plasma membrane","type":"exact"}],"termid":"FYPO:0006222"}


id: PBO:0082388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Beta-adaptin; large subunit of the clathrin associated protein complex (AP-2); involved in vesicle mediated transport; similar to mammalian beta-chain of the clathrin associated protein complex","termid":"PBO:0082388"}


id: PBO:0110062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF3128 family, human c22orf39 ortholog, implicated in gene expression","termid":"PBO:0110062"}


id: GO:0004305
data:
  {"annotated_genes":["SJAG_01918"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84974],"is_not":false,"summary":null,"term":"GO:0004305"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + ethanolamine = ADP + 2 H+ + phosphoethanolamine.","definition_xrefs":["EC:2.7.1.82","RHEA:13069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01918":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016301","GO:0003674"],"is_obsolete":false,"name":"ethanolamine kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-1483222","MetaCyc:ETHANOLAMINE-KINASE-RXN","KEGG_REACTION:R01468"],"synonyms":[{"name":"ATP:ethanolamine O-phosphotransferase activity","type":"related"},{"name":"ethanolamine kinase (phosphorylating)","type":"related"},{"name":"ethanolamine phosphokinase activity","type":"related"}],"termid":"GO:0004305","terms_by_termid":{"GO:0004305":null}}


id: PATO:0002053
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's being flattened along dorso-ventral axis.","definition_xrefs":["PATOC:MSP"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flattened","termid":"PATO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dorso-ventrally flattened","termid":"PATO:0002053"}


id: PBO:0080200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VENTX pseudogene 8","termid":"PBO:0080200"}


id: PBO:0064183
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group XJ, pseudogene","termid":"PBO:0064183"}


id: GO:0003918
data:
  {"annotated_genes":["SJAG_03567","SJAG_05295"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86444,102316],"is_not":false,"summary":null,"term":"GO:0003918"}]},"cv_name":"molecular_function","definition":"Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined, driven by ATP hydrolysis. The enzyme changes the linking number in multiples of 2.","definition_xrefs":["PMID:8811192"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA topoisomerase activity","termid":"GO:0003916"},{"relation_name":"is_a","term_name":"ATP-dependent activity, acting on DNA","termid":"GO:0008094"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03567":null,"SJAG_05295":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140097","GO:0003674","GO:0016853","GO:0003824"],"is_obsolete":false,"name":"DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Type_II_topoisomerase","MetaCyc:5.99.1.3-RXN","GO:0061505","EC:5.6.2.2"],"synonyms":[{"name":"DNA topoisomerase (ATP-hydrolysing)","type":"related"},{"name":"DNA topoisomerase II","type":"narrow"},{"name":"DNA topoisomerase II activity","type":"narrow"},{"name":"DNA topoisomerase IV activity","type":"narrow"},{"name":"DNA topoisomerase type II activity","type":"exact"},{"name":"deoxyribonucleate topoisomerase","type":"broad"},{"name":"deoxyribonucleic topoisomerase activity","type":"broad"},{"name":"topoisomerase","type":"broad"},{"name":"topoisomerase II","type":"narrow"},{"name":"type II DNA topoisomerase activity","type":"related"}],"termid":"GO:0003918","terms_by_termid":{"GO:0003918":null}}


id: MOD:00666
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with an octanoyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acylated residue","termid":"MOD:00649"},{"relation_name":"is_a","term_name":"lipoconjugated residue","termid":"MOD:01155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"octanoylated residue","synonyms":[{"name":"OctRes","type":"exact"}],"termid":"MOD:00666"}


id: PBO:0062799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OS9 endoplasmic reticulum lectin","termid":"PBO:0062799"}


id: GO:0033520
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of phytol, (2E,7R,11R)-3,7,11,15-tetramethylhexadec-2-en-1-ol.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diterpenoid biosynthetic process","termid":"GO:0016102"},{"relation_name":"is_a","term_name":"phytol metabolic process","termid":"GO:0033306"},{"relation_name":"is_a","term_name":"primary alcohol biosynthetic process","termid":"GO:0034309"},{"relation_name":"is_a","term_name":"fatty alcohol biosynthetic process","termid":"GO:1903175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"phytol biosynthetic process","synonyms":[{"name":"phytol anabolism","type":"exact"},{"name":"phytol biosynthesis","type":"exact"},{"name":"phytol formation","type":"exact"},{"name":"phytol synthesis","type":"exact"}],"termid":"GO:0033520"}


id: PBO:0083717
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER protein that functions in assembly of the V0 sector of V-ATPase; functions with other assembly factors; null mutation enhances the vacuolar ATPase (V-ATPase) deficiency of a vma21 mutant impaired in endoplasmic reticulum (ER) retrieval","termid":"PBO:0083717"}


id: GO:1904330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of myofibroblast contraction.","definition_xrefs":["PMID:19239477","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of actin filament-based movement","termid":"GO:1903116"},{"relation_name":"is_a","term_name":"regulation of myofibroblast contraction","termid":"GO:1904328"},{"relation_name":"positively_regulates","term_name":"myofibroblast contraction","termid":"GO:1990764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of myofibroblast contraction","synonyms":[{"name":"activation of MF contraction","type":"narrow"},{"name":"activation of MFB contraction","type":"narrow"},{"name":"activation of myofibroblast contraction","type":"narrow"},{"name":"positive regulation of MF contraction","type":"exact"},{"name":"positive regulation of MFB contraction","type":"exact"},{"name":"up regulation of MF contraction","type":"exact"},{"name":"up regulation of MFB contraction","type":"exact"},{"name":"up regulation of myofibroblast contraction","type":"exact"},{"name":"up-regulation of MF contraction","type":"exact"},{"name":"up-regulation of MFB contraction","type":"exact"},{"name":"up-regulation of myofibroblast contraction","type":"exact"},{"name":"upregulation of MF contraction","type":"exact"},{"name":"upregulation of MFB contraction","type":"exact"},{"name":"upregulation of myofibroblast contraction","type":"exact"}],"termid":"GO:1904330"}


id: PBO:0042279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated","termid":"PBO:0042279"}


id: PBO:0074107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 28 member 3","termid":"PBO:0074107"}


id: PBO:0089702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycoside Hydrolase family protein Gls1","termid":"PBO:0089702"}


id: PBO:0070257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U11 small nuclear 2, pseudogene","termid":"PBO:0070257"}


id: PBO:0052937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 22-1","termid":"PBO:0052937"}


id: FYPO:0007521
data:
  {"alleles_by_uniquename":{"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_04551:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04551","name":"pmk1delta","uniquename":"SJAG_04551:allele-1"},"SJAG_04551:allele-2":{"allele_type":"amino_acid_insertion","description":"82-NITCIYDLDIIINPYNFNEVYIYEE-105","gene_uniquename":"SJAG_04551","name":"Pmk1Sj(ins82-105)","uniquename":"SJAG_04551:allele-2"},"SJAG_04551:allele-3":{"allele_type":"other","description":"Pmk1 from S. pombe","gene_uniquename":"SJAG_04551","name":"Pmk1Sp","uniquename":"SJAG_04551:allele-3"},"SJAG_04551:allele-4":{"allele_type":"partial_amino_acid_deletion","description":"Pmk1 from S. pombe with deleted residues 82-105","gene_uniquename":"SJAG_04551","name":"Pmk1Sp(delta82-105)","uniquename":"SJAG_04551:allele-4"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115241,115256,115262,115267,115270],"is_not":false,"summary":null,"term":"FYPO:0007521"}]},"cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of higher concentrations of tacrolimus and magnesium chloride than normal.","definition_xrefs":["PMID:19625445","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00610":null,"SJAG_04551":null},"genotype_count":5,"genotypes_by_uniquename":{"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sj(ins82-105)(82-NITCIYDLDIIINPYNFNEVYIYEE-105)","display_uniquename":"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-2","expression":"Not assayed or wild type"}]}]},"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sp(delta82-105)(Pmk1 from S. pombe with deleted residues 82-105 Δaa)","display_uniquename":"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-4","expression":"Not assayed or wild type"}]}]},"Pmk1Sp-Pmk1_from_S._pombe-other-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sp(Pmk1 from S. pombe)","display_uniquename":"Pmk1Sp-Pmk1_from_S._pombe-other-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-3","expression":"Not assayed or wild type"}]}]},"pck2delta":{"display_name":"pck2delta","display_uniquename":"pck2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00610:allele-1","expression":"Null"}]}]},"pmk1delta":{"display_name":"pmk1delta","display_uniquename":"pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002682"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","references_by_uniquename":{"PMID:34198697":null},"single_locus_annotated_genes":["SJAG_04551","SJAG_00610"],"single_locus_genotype_uniquenames":["Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","Pmk1Sp-Pmk1_from_S._pombe-other-expression-not_assayed_or_wild_type","pmk1delta","Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","pck2delta"],"synonyms":[{"name":"hypersensitive to tacrolimus and magnesium chloride","type":"exact"},{"name":"resistance to FK506 and magnesium chloride","type":"exact"},{"name":"resistance to magnesium chloride and FK506","type":"exact"},{"name":"resistance to magnesium chloride and tacrolimus","type":"exact"},{"name":"resistance to tacrolimus and MgCl2","type":"exact"},{"name":"resistance to tacrolimus and magnesium chloride during mitotic cell cycle","type":"related"},{"name":"resistance to tacrolimus and magnesium chloride during vegetative growth","type":"exact"},{"name":"resistant to tacrolimus and magnesium chloride","type":"exact"},{"name":"viable in the presence of FK506 and chloride","type":"exact"},{"name":"vic","type":"related"}],"termid":"FYPO:0007521","terms_by_termid":{"FYPO:0007521":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: GO:1904333
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of error-prone translesion synthesis.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:kmv","PMID:22761594"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of DNA repair","termid":"GO:0045739"},{"relation_name":"is_a","term_name":"regulation of error-prone translesion synthesis","termid":"GO:1904331"},{"relation_name":"is_a","term_name":"positive regulation of DNA biosynthetic process","termid":"GO:2000573"},{"relation_name":"positively_regulates","term_name":"error-prone translesion synthesis","termid":"GO:0042276"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006281"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006281"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0006281","GO:0006259"],"is_obsolete":false,"name":"positive regulation of error-prone translesion synthesis","synonyms":[{"name":"activation of error-prone postreplication DNA repair","type":"related"},{"name":"activation of error-prone translesion synthesis","type":"narrow"},{"name":"activation of mutagenic PRR","type":"narrow"},{"name":"activation of mutagenic postreplication DNA repair","type":"related"},{"name":"positive regulation of error-prone postreplication DNA repair","type":"related"},{"name":"positive regulation of mutagenic PRR","type":"exact"},{"name":"positive regulation of mutagenic postreplication DNA repair","type":"related"},{"name":"up regulation of error-prone postreplication DNA repair","type":"related"},{"name":"up regulation of error-prone translesion synthesis","type":"exact"},{"name":"up regulation of mutagenic PRR","type":"exact"},{"name":"up regulation of mutagenic postreplication DNA repair","type":"related"},{"name":"up-regulation of error-prone postreplication DNA repair","type":"related"},{"name":"up-regulation of error-prone translesion synthesis","type":"exact"},{"name":"up-regulation of mutagenic PRR","type":"exact"},{"name":"up-regulation of mutagenic postreplication DNA repair","type":"related"},{"name":"upregulation of error-prone postreplication DNA repair","type":"related"},{"name":"upregulation of error-prone translesion synthesis","type":"exact"},{"name":"upregulation of mutagenic PRR","type":"exact"},{"name":"upregulation of mutagenic postreplication DNA repair","type":"related"}],"termid":"GO:1904333"}


id: FYPO:0001990
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population growth phenotype in which vegetative cells grow normally (i.e. indistinguishably from wild type) at a pH lower than that of standard S. pombe growth medium (abut 5.8).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000003","FYPO:0000139","FYPO:0002058","FYPO:0002057","FYPO:0002060"],"is_obsolete":false,"name":"normal cell population growth at low pH","synonyms":[{"name":"normal growth at low pH","type":"broad"},{"name":"normal vegetative cell population growth at low pH","type":"exact"}],"termid":"FYPO:0001990"}


id: GO:0043801
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-ribulose 5-phosphate + formaldehyde = D-arabino-3-hexulose 6-phosphate.","definition_xrefs":["PMID:16075199"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"hexulose-6-phosphate synthase activity","secondary_identifiers":["EC:4.1.2.43","MetaCyc:R10-RXN","RHEA:25201"],"termid":"GO:0043801"}


id: GO:0034659
data:
  {"annotated_genes":["SJAG_00671"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84583],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990556"}]},"cv_name":"biological_process","definition":"The directed movement of isopropylmalate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid transport","termid":"GO:0006835"},{"relation_name":"is_a","term_name":"monocarboxylic acid transport","termid":"GO:0015718"},{"relation_name":"is_a","term_name":"organic hydroxy compound transport","termid":"GO:0015850"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00671":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"isopropylmalate transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0034659","terms_by_termid":{"GO:1990556":null}}


id: PBO:0052503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 15","termid":"PBO:0052503"}


id: FYPO:0002218
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which all vegetative cells arising from a population of germinated spores are inviable, and have germ tubes with normal morphology (i.e. size, shape, and structure) that do not septate.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable vegetative cell population after spore germination, normal unseptated germ tube morphology (obsolete FYPO:0002218)","synonyms":[{"name":"inviable germinated spore population, normal unseptated germ tube morphology","type":"exact"}],"termid":"FYPO:0002218"}


id: PBO:0056613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"male-enhanced antigen 1","termid":"PBO:0056613"}


id: PBO:0040588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BACE2 intronic transcript 1","termid":"PBO:0040588"}


id: PBO:0076414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein associated factor 7 like","termid":"PBO:0076414"}


id: PBO:0044003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CSMD2 antisense RNA 1","termid":"PBO:0044003"}


id: GO:0002270
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A change in the morphology or behavior of a plasmacytoid dendritic cell resulting from exposure to an activating factor such as a cellular or soluble ligand.","definition_xrefs":["GOC:add","PMID:16174109","PMID:15990333"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte activation","termid":"GO:0045321"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"plasmacytoid dendritic cell activation","termid":"GO:0002270"}


id: PATO:0001818
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"occurrence","termid":"PATO:0000057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"progressive","termid":"PATO:0001818"}


id: GO:0051305
data:
  {"annotated_genes":["SJAG_02624","SJAG_03540","SJAG_03683","SJAG_00794","SJAG_02761","SJAG_04076","SJAG_02814","SJAG_01297","SJAG_02336","SJAG_01613","SJAG_01805"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114249],"is_not":false,"summary":null,"term":"GO:0051305"},{"annotations":[98576,112052,114767,91450,114251,96517,95355,105273,89932],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990571"},{"annotations":[100033,104384,96519],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007079"}]},"cv_name":"biological_process","definition":"The directed movement of chromosomes in the center of the spindle towards the spindle poles, mediated by the shortening of microtubules attached to the chromosomes.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule-based movement","termid":"GO:0007018"},{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"is_a","term_name":"chromosome localization","termid":"GO:0050000"},{"relation_name":"part_of","term_name":"nuclear chromosome segregation","termid":"GO:0098813"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00794":null,"SJAG_01297":null,"SJAG_01613":null,"SJAG_01805":null,"SJAG_02336":null,"SJAG_02624":null,"SJAG_02761":null,"SJAG_02814":null,"SJAG_03540":null,"SJAG_03683":null,"SJAG_04076":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"chromosome movement towards spindle pole","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"chromosome migration to spindle pole","type":"exact"},{"name":"chromosome movement","type":"broad"},{"name":"chromosome movement to spindle pole","type":"exact"}],"termid":"GO:0051305","terms_by_termid":{"GO:0007079":null,"GO:0051305":null,"GO:1990571":null}}


id: PBO:0087549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of RNA polymerase III transcription initiation factor complex; one of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauA globular domain of TFIIIC that binds DNA at the BoxA promoter sites of tRNA and similar genes; human homolog is TFIIIC-63","termid":"PBO:0087549"}


id: GO:2001115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving a methanopterin.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphate-containing compound metabolic process","termid":"GO:0006796"},{"relation_name":"is_a","term_name":"organophosphate metabolic process","termid":"GO:0019637"},{"relation_name":"is_a","term_name":"pteridine-containing compound metabolic process","termid":"GO:0042558"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"methanopterin-containing compound metabolic process","synonyms":[{"name":"methanopterin metabolism","type":"exact"}],"termid":"GO:2001115"}


id: PR:O94372
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- noc4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94372"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1604.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1604.06c","synonyms":[{"name":"Spom972h-noc4","type":"exact"}],"termid":"PR:O94372"}


id: GO:0034574
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: didemethylisoproturon + H2O = 4'-(2-hydroxyisopropyl)phenylurea + 2 H+ + 2 e-.","definition_xrefs":["UM-BBD_reactionID:r0899"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH or CH2 groups","termid":"GO:0016725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"didemethylisoproturon dehydrogenase activity","secondary_identifiers":["EC:1.17.99.-"],"termid":"GO:0034574"}


id: GO:0102207
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: docosanoate + O2 + reduced [NADPH--hemoprotein reductase] = 22-hydroxydocosanoate + H+ + H2O + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["RHEA:40079","GOC:pz","GOC:krc"],"gene_count":0,"genotype_count":0,"name":"obsolete docosanoate omega-hydroxylase activity (obsolete GO:0102207)","synonyms":[{"name":"behenate omega-hydroxylase activity","type":"exact"}],"termid":"GO:0102207"}


id: MOD:00491
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["PubMed:11861642","Unimod:119#C"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"phosphorus containing modified residue","termid":"MOD:00861"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thio ether formation - BTP Adduct","synonyms":[{"name":"IBTP","type":"related"},{"name":"Thio Ether Formation - BTP Adduct","type":"related"}],"termid":"MOD:00491"}


id: PBO:0051316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1/OR2-118 (pseudogene)","termid":"PBO:0051316"}


id: GO:0030904
data:
  {"annotated_genes":["SJAG_04275","SJAG_00632","SJAG_00971","SJAG_04629","SJAG_00314","SJAG_01039"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[85546,94333,97842,108588,114514,115113],"is_not":false,"summary":null,"term":"GO:0030904"},{"annotations":[114515],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030906"},{"annotations":[97843],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030905"}]},"cv_name":"cellular_component","definition":"A conserved hetero-pentameric membrane-associated complex involved in retrograde transport from endosomes to the Golgi apparatus. The budding yeast retromer comprises Vps35p, Vps29p, Vps26p, Vps5p, and Vps17p. The mammalian complex shows slight variation in composition compared to yeast, and comprises SNX1 or SNX2, SNX5 or SNX6, VPS26A or VPS26B, VPS29, and VPS35.","definition_xrefs":["PMID:26220253","GOC:bf","PMID:27385586","PMID:9700157"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"part_of","term_name":"endomembrane system","termid":"GO:0012505"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00314":null,"SJAG_00632":null,"SJAG_00971":null,"SJAG_01039":null,"SJAG_04275":null,"SJAG_04629":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"retromer complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0030904","terms_by_termid":{"GO:0030904":null,"GO:0030905":null,"GO:0030906":null}}


id: GO:0016665
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces an acceptor other than a cytochrome, an iron-sulfur protein, oxygen, NAD or NADP.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete oxidoreductase activity, acting on other nitrogenous compounds as donors, other acceptors (obsolete GO:0016665)","synonyms":[{"name":"oxidoreductase activity, acting on other nitrogenous compounds as donors, other acceptors","type":"exact"}],"termid":"GO:0016665"}


id: GO:0006257
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of dUDP, deoxyuridine (5'-)diphosphate.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside diphosphate catabolic process","termid":"GO:0009198"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleotide catabolic process","termid":"GO:0009223"},{"relation_name":"is_a","term_name":"dUDP metabolic process","termid":"GO:0046077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"dUDP catabolic process","synonyms":[{"name":"dUDP breakdown","type":"exact"},{"name":"dUDP catabolism","type":"exact"},{"name":"dUDP degradation","type":"exact"}],"termid":"GO:0006257"}


id: PBO:0085536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S6, no bacterial homolog; phosphorylated on S233 by Ypk3p in a TORC1-dependent manner, and on S232 in a TORC1/2-dependent manner by Ypk1/2/3p; RPS6B has a paralog, RPS6A, that arose from the whole genome duplication","termid":"PBO:0085536"}


id: PBO:0052304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KIAA0040","termid":"PBO:0052304"}


id: PBO:0038657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acid phosphatase 7, tartrate resistant (putative)","termid":"PBO:0038657"}


id: PBO:0052302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KH-type splicing regulatory protein","termid":"PBO:0052302"}


id: PBO:0042128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cervical cancer associated DHX9 suppressive transcript","termid":"PBO:0042128"}


id: FYPO:0007927
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to dihydrocoumarin. Cells stop growing (and may die) at a concentration of dihydrocoumarin that allows wild type cells to grow.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002683","FYPO:0000003","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to dihydrocoumarin","synonyms":[{"name":"sensitive to dihydrocoumarin during vegetative growth","type":"exact"}],"termid":"FYPO:0007927"}


id: GO:0018837
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-hydroxy-2 H-benzo[h]chromene-2-carboxylate = cis -4-(1'-hydroxynaphth-2'-yl)-2-oxobut-3-enoate.","definition_xrefs":["UM-BBD_reactionID:r0502"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on hydroxy acids and derivatives","termid":"GO:0016856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0003824"],"is_obsolete":false,"name":"2-hydroxy-2H-benzo[h]chromene-2-carboxylate isomerase activity","termid":"GO:0018837"}


id: PBO:0067039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 55, pseudogene","termid":"PBO:0067039"}


id: GO:0048335
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of mesoderm cell fate determination.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mesodermal cell fate determination","termid":"GO:0048334"},{"relation_name":"is_a","term_name":"negative regulation of cell fate determination","termid":"GO:1905934"},{"relation_name":"negatively_regulates","term_name":"mesodermal cell fate determination","termid":"GO:0007500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of mesodermal cell fate determination","synonyms":[{"name":"down regulation of mesodermal cell fate determination","type":"exact"},{"name":"down-regulation of mesodermal cell fate determination","type":"exact"},{"name":"downregulation of mesodermal cell fate determination","type":"exact"},{"name":"inhibition of mesodermal cell fate determination","type":"narrow"}],"termid":"GO:0048335"}


id: PBO:0084929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA binding protein, member of the CCCH zinc finger family; similar to mammalian Tis11 protein, which activates transcription and also has a role in mRNA degradation; functions with Tis11p in regulation of iron homeostasis; CTH1 has a paralog, TIS11, that arose from the whole genome duplication","termid":"PBO:0084929"}


id: PBO:0057074
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 153-2","termid":"PBO:0057074"}


id: FYPO:0008011
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An RNA localization phenotype where the loading of siRNAs onto the RITs complex is abolished.","definition_xrefs":["PomBase:mlr","PMID:15615848"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA localization","termid":"FYPO:0000366"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abolished siRNA loading onto RITS complex","synonyms":[{"name":"abolished recruitment of siRNA onto RITS complex","type":"exact"},{"name":"decreased siRNA localization to RITS complex","type":"exact"}],"termid":"FYPO:0008011"}


id: FYPO:0005799
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which microtubule plus ends remain in contact with the cell cortex at cell tips for a shorter time than normal.","definition_xrefs":["PomBase:mah","PMID:11007487"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton organization during vegetative growth","termid":"FYPO:0001350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000054","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased microtubule dwell time at cell tip","synonyms":[{"name":"decreased microtubule dwell time at cell end","type":"exact"},{"name":"decreased microtubule dwell time at cell tip during mitotic cell cycle","type":"related"},{"name":"decreased microtubule dwell time at cell tip during vegetative growth","type":"exact"},{"name":"decreased microtubule plus end dwell time at cell tip","type":"exact"},{"name":"reduced microtubule dwell time at cell tip","type":"exact"}],"termid":"FYPO:0005799"}


id: PBO:0017596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clr6 histone deacetylase complex subunit Mug165","termid":"PBO:0017596"}


id: PR:O14463
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A thioredoxin that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01101"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC7D4.07c","secondary_identifiers":["UniProtKB:O14463"],"synonyms":[{"name":"Spom972h-TXN","type":"exact"},{"name":"TR-1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Trx-1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14463"}


id: PBO:0063716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglucomutase 5 pseudogene 4","termid":"PBO:0063716"}


id: GO:2000288
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of myoblast proliferation.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"is_a","term_name":"regulation of myoblast proliferation","termid":"GO:2000291"},{"relation_name":"positively_regulates","term_name":"myoblast proliferation","termid":"GO:0051450"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of myoblast proliferation","termid":"GO:2000288"}


id: PBO:0076917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor AP-2 epsilon","termid":"PBO:0076917"}


id: GO:0045681
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of R8 cell differentiation.","definition_xrefs":["GOC:tb","GOC:dph","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of R8 cell differentiation","termid":"GO:0045679"},{"relation_name":"is_a","term_name":"positive regulation of compound eye photoreceptor cell differentiation","termid":"GO:0110117"},{"relation_name":"positively_regulates","term_name":"R8 cell differentiation","termid":"GO:0045465"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of R8 cell differentiation","synonyms":[{"name":"activation of R8 differentiation","type":"narrow"},{"name":"positive regulation of R8 differentiation","type":"exact"},{"name":"stimulation of R8 differentiation","type":"narrow"},{"name":"up regulation of R8 differentiation","type":"exact"},{"name":"up-regulation of R8 differentiation","type":"exact"},{"name":"upregulation of R8 differentiation","type":"exact"}],"termid":"GO:0045681"}


id: PBO:0080437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS53 subunit of GARP complex","termid":"PBO:0080437"}


id: GO:0034779
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-isopropenyl-2-ketocyclohexane-1-carboxyl-CoA + H2O = 3-isopropenylpimelyl-CoA.","definition_xrefs":["UM-BBD_reactionID:r1004"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances","termid":"GO:0016823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"4-isopropenyl-2-ketocyclohexane-1-carboxyl-CoA hydrolase activity","termid":"GO:0034779"}


id: GO:0032276
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the regulated release of a gonadotropin.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endocrine process","termid":"GO:0044060"},{"relation_name":"is_a","term_name":"regulation of hormone secretion","termid":"GO:0046883"},{"relation_name":"regulates","term_name":"gonadotropin secretion","termid":"GO:0032274"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of gonadotropin secretion","synonyms":[{"name":"regulation of gonadotrophin secretion","type":"exact"}],"termid":"GO:0032276"}


id: PBO:0016922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Mug165","termid":"PBO:0016922"}


id: FYPO:0006378
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the endoplasmic reticulum is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0000257","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to endoplasmic reticulum during vegetative growth","synonyms":[{"name":"normal protein localisation to endoplasmic reticulum during vegetative growth","type":"exact"},{"name":"normal protein localization to ER during vegetative growth","type":"exact"},{"name":"normal protein localization to endoplasmic reticulum during mitotic cell cycle","type":"related"}],"termid":"FYPO:0006378"}


id: GO:0035658
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that functions as a guanine nucleotide exchange factor (GEF) and converts Rab-GDP to Rab-GTP. In S. cerevisiae, this complex consists of at least Mon1 and Ccz1, and serves as a GEF for the Rab Ypt7p.","definition_xrefs":["GOC:rb","PMID:20797862"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanyl-nucleotide exchange factor complex","termid":"GO:0032045"},{"relation_name":"part_of","term_name":"late endosome","termid":"GO:0005770"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0031410","GO:0032991","GO:0005575","GO:0005737","GO:0005768"],"is_obsolete":false,"name":"Mon1-Ccz1 complex","termid":"GO:0035658"}


id: GO:0004052
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: arachidonate + O2 = (5Z,8Z,10E,12S,14Z)-12-hydroperoxyicosa-5,8,10,14-tetraenoate.","definition_xrefs":["EC:1.13.11.31","RHEA:10428"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"arachidonate 12(S)-lipoxygenase activity","secondary_identifiers":["Reactome:R-HSA-2161964","MetaCyc:ARACHIDONATE-12-LIPOXYGENASE-RXN","Reactome:R-HSA-2161948","KEGG_REACTION:R01596","Reactome:R-HSA-9026006","Reactome:R-HSA-9024983","Reactome:R-HSA-9025957","Reactome:R-HSA-2161950","Reactome:R-HSA-9026007"],"synonyms":[{"name":"12S-lipoxygenase activity","type":"related"},{"name":"C-12 lipoxygenase activity","type":"related"},{"name":"LTA4 synthase activity","type":"related"},{"name":"12-lipoxygenase activity","type":"related"},{"name":"12Delta-lipoxygenase activity","type":"related"},{"name":"arachidonate:oxygen 12-oxidoreductase activity","type":"related"},{"name":"delta12-lipoxygenase activity","type":"related"},{"name":"leukotriene A4 synthase","type":"broad"}],"termid":"GO:0004052"}


id: GO:0030460
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:elh"],"gene_count":0,"genotype_count":0,"name":"obsolete nuclear translocation of MAPK (mating sensu Fungi) (obsolete GO:0030460)","synonyms":[{"name":"nuclear translocation of MAPK (mating sensu Fungi)","type":"exact"}],"termid":"GO:0030460"}


id: GO:0015332
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete leucine/valine/isoleucine permease activity (obsolete GO:0015332)","synonyms":[{"name":"leucine/valine/isoleucine permease activity","type":"exact"}],"termid":"GO:0015332"}


id: GO:0106405
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the dephosphorylation of isoprenoid diphosphates.","definition_xrefs":["PMID:33246356"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"isoprenoid diphosphate phosphatase activity","termid":"GO:0106405"}


id: GO:0015993
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of molecular hydrogen (H2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete molecular hydrogen transport (obsolete GO:0015993)","termid":"GO:0015993"}


id: PBO:0086254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that positively regulates actin assembly; forms a homodimer and interacts with G-actin; localization to the bud neck and bud tip requires Spa2p; YFR016C is not an essential gene","termid":"PBO:0086254"}


id: PBO:0078513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRIM6-TRIM34 readthrough","termid":"PBO:0078513"}


id: PBO:0061794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"odontogenic, ameloblast associated","termid":"PBO:0061794"}


id: PBO:0042271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperonin containing TCP1 subunit 7","termid":"PBO:0042271"}


id: PBO:0054884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2298","termid":"PBO:0054884"}


id: PBO:0088024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U1 snRNP protein involved in splicing; required for U1 snRNP biogenesis; contains multiple tetriatricopeptide repeats","termid":"PBO:0088024"}


id: GO:0048104
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Orientation of hairs or sensory bristles that cover the body surface of an adult, such that they all point in a uniform direction along the plane of the epithelium from which they project.","definition_xrefs":["GOC:dph","GOC:tb","GOC:jid","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of planar polarity","termid":"GO:0001736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"establishment of body hair or bristle planar orientation","termid":"GO:0048104"}


id: GO:1904874
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of telomerase RNA localization to Cajal body.","definition_xrefs":["GO_REF:0000058","GOC:BHF","PMID:25467444","GOC:BHF_telomere","GOC:TermGenie","GOC:nc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biological process","termid":"GO:0048518"},{"relation_name":"is_a","term_name":"regulation of telomerase RNA localization to Cajal body","termid":"GO:1904872"},{"relation_name":"positively_regulates","term_name":"telomerase RNA localization to Cajal body","termid":"GO:0090671"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of telomerase RNA localization to Cajal body","synonyms":[{"name":"activation of telomerase RNA localization to Cajal body","type":"narrow"},{"name":"up regulation of telomerase RNA localization to Cajal body","type":"exact"},{"name":"up-regulation of telomerase RNA localization to Cajal body","type":"exact"},{"name":"upregulation of telomerase RNA localization to Cajal body","type":"exact"}],"termid":"GO:1904874"}


id: PBO:0052288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kell metallo-endopeptidase (Kell blood group)","termid":"PBO:0052288"}


id: GO:1902889
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a spindle microtubule.","definition_xrefs":["GOC:TermGenie","PMID:16054030","GO_REF:0000087","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to microtubule","termid":"GO:0035372"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to spindle microtubule","synonyms":[{"name":"protein localisation in spindle microtubule","type":"exact"},{"name":"protein localisation to spindle microtubule","type":"exact"},{"name":"protein localization in spindle microtubule","type":"exact"}],"termid":"GO:1902889"}


id: PBO:0051099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 1-2","termid":"PBO:0051099"}


id: GO:1903181
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of dopamine biosynthetic process.","definition_xrefs":["GOC:bf","GOC:PARL","PMID:19703902","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"positive regulation of dopamine metabolic process","termid":"GO:0045964"},{"relation_name":"is_a","term_name":"regulation of dopamine biosynthetic process","termid":"GO:1903179"},{"relation_name":"positively_regulates","term_name":"dopamine biosynthetic process","termid":"GO:0042416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of dopamine biosynthetic process","synonyms":[{"name":"activation of dopamine anabolism","type":"narrow"},{"name":"activation of dopamine biosynthesis","type":"narrow"},{"name":"activation of dopamine biosynthetic process","type":"narrow"},{"name":"activation of dopamine formation","type":"narrow"},{"name":"activation of dopamine synthesis","type":"narrow"},{"name":"positive regulation of dopamine anabolism","type":"exact"},{"name":"positive regulation of dopamine biosynthesis","type":"exact"},{"name":"positive regulation of dopamine formation","type":"exact"},{"name":"positive regulation of dopamine synthesis","type":"exact"},{"name":"up regulation of dopamine anabolism","type":"exact"},{"name":"up regulation of dopamine biosynthesis","type":"exact"},{"name":"up regulation of dopamine biosynthetic process","type":"exact"},{"name":"up regulation of dopamine formation","type":"exact"},{"name":"up regulation of dopamine synthesis","type":"exact"},{"name":"up-regulation of dopamine anabolism","type":"exact"},{"name":"up-regulation of dopamine biosynthesis","type":"exact"},{"name":"up-regulation of dopamine biosynthetic process","type":"exact"},{"name":"up-regulation of dopamine formation","type":"exact"},{"name":"up-regulation of dopamine synthesis","type":"exact"},{"name":"upregulation of dopamine anabolism","type":"exact"},{"name":"upregulation of dopamine biosynthesis","type":"exact"},{"name":"upregulation of dopamine biosynthetic process","type":"exact"},{"name":"upregulation of dopamine formation","type":"exact"},{"name":"upregulation of dopamine synthesis","type":"exact"}],"termid":"GO:1903181"}


id: PBO:0111689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"farnesyltransferase, CAAX box, subunit beta","termid":"PBO:0111689"}


id: FYPO:0005376
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which proteolysis is abnormal. Proteolysis is the hydrolysis of one or more peptide bonds within a protein.","definition_xrefs":["GO:0006508","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein metabolic process","termid":"FYPO:0002274"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal proteolysis","synonyms":[{"name":"abnormal peptidolysis","type":"exact"},{"name":"abnormal protein cleavage","type":"narrow"}],"termid":"FYPO:0005376"}


id: GO:0032462
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein homooligomerization.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein oligomerization","termid":"GO:0032459"},{"relation_name":"regulates","term_name":"protein homooligomerization","termid":"GO:0051260"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"regulation of protein homooligomerization","termid":"GO:0032462"}


id: PATO:0001407
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus.","definition_xrefs":["Biology-online:Biology-online"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleated","termid":"PATO:0002505"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mononucleate","termid":"PATO:0001407"}


id: MOD:01101
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because erroneous and apparently redundant to MOD:00111. Remap to MOD:00111.","definition_xrefs":["DeltaMass:0"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:01101 S-Farnesyl- (obsolete MOD:01101)","termid":"MOD:01101"}


id: PBO:0040231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"activating transcription factor 4 pseudogene 3","termid":"PBO:0040231"}


id: PBO:0089933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L36","termid":"PBO:0089933"}


id: PBO:0081190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zic family member 3","termid":"PBO:0081190"}


id: PBO:0072148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 25","termid":"PBO:0072148"}


id: PBO:0061212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar protein 4 like","termid":"PBO:0061212"}


id: PBO:0034713
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by H. sapiens RAB6A","termid":"PBO:0034713"}


id: GO:0034319
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: butanoyl-CoA + an alcohol = CoA + a butyl ester.","definition_xrefs":["GOC:mah","PMID:16361250"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acetyltransferase activity","termid":"GO:0016413"},{"relation_name":"is_a","term_name":"alcohol O-acyltransferase activity","termid":"GO:0034318"},{"relation_name":"is_a","term_name":"O-butanoyltransferase activity","termid":"GO:0034323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016746"],"is_obsolete":false,"name":"alcohol O-butanoyltransferase activity","termid":"GO:0034319"}


id: PR:O74823
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- red5 gene.","definition_xrefs":["UniProtKB:O74823","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCCH domain-containing protein C337.12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC337.12","synonyms":[{"name":"Spom972h-red5","type":"exact"}],"termid":"PR:O74823"}


id: PBO:0057578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 875","termid":"PBO:0057578"}


id: GO:1901953
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of anterograde dense core granule transport.","definition_xrefs":["GOC:kmv","PMID:23358451","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of vesicle transport along microtubule","termid":"GO:1901610"},{"relation_name":"is_a","term_name":"regulation of anterograde dense core granule transport","termid":"GO:1901951"},{"relation_name":"is_a","term_name":"positive regulation of dense core granule transport","termid":"GO:1904811"},{"relation_name":"positively_regulates","term_name":"anterograde neuronal dense core vesicle transport","termid":"GO:1990048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of anterograde dense core granule transport","synonyms":[{"name":"activation of anterograde dense core granule transport","type":"narrow"},{"name":"up regulation of anterograde dense core granule transport","type":"exact"},{"name":"up-regulation of anterograde dense core granule transport","type":"exact"},{"name":"upregulation of anterograde dense core granule transport","type":"exact"}],"termid":"GO:1901953"}


id: PBO:0059070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"molybdenum cofactor synthesis 1","termid":"PBO:0059070"}


id: GO:0089715
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + tRNA containing N6-threonylcarbamoyladenosine at position 37 = S-adenosyl-L-homocysteine + tRNA containing N6-methylthreonylcarbamoyladenosine at position 37.","definition_xrefs":["RHEA:70027","PMID:25063302"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA (adenine) methyltransferase activity","termid":"GO:0016426"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140101"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016741","GO:0003824","GO:0140098","GO:0140101"],"is_obsolete":false,"name":"tRNA (L-threonylcarbamoyladenosine(37)-C2) methyltransferase activity","secondary_identifiers":["MetaCyc:RXN0-7114"],"synonyms":[{"name":"tRNA (L-threonylcarbamoyladenosine(37)-C(2)) methyltransferase activity","type":"exact"},{"name":"tRNA (L-threonylcarbamoyladenosine37-C2-) methyltransferase activity","type":"exact"},{"name":"tRNA m6t6A37 methyltransferase activity","type":"exact"}],"termid":"GO:0089715"}


id: PBO:0074759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 118","termid":"PBO:0074759"}


id: PBO:0042792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 170B","termid":"PBO:0042792"}


id: GO:0072360
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the vascular cord over time from its initial formation until its mature state. The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis.","definition_xrefs":["GOC:mah","PMID:7084422","ZFA:0005077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"circulatory system development","termid":"GO:0072359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vascular cord development","termid":"GO:0072360"}


id: PBO:0068840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 78, pseudogene","termid":"PBO:0068840"}


id: GO:0071972
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 a peptidoglycan dimer (tetrapeptide) + 3 H2O = a peptidoglycan tetramer with L,D cross-links (L-Lys-D-Asn-L-Lys) + di-trans,poly-cis-undecaprenyl diphosphate + 4 D-alanine.","definition_xrefs":["MetaCyc:RXN-11349"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine-type carboxypeptidase activity","termid":"GO:0004185"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0008233","GO:0140096","GO:0016787"],"is_obsolete":false,"name":"peptidoglycan L,D-transpeptidase activity","termid":"GO:0071972"}


id: FYPO:0000431
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which fermentation does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal fermentation","termid":"FYPO:0000430"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abolished fermentation","synonyms":[{"name":"abolished fermentation during mitotic cell cycle","type":"related"},{"name":"absent fermentative metabolism","type":"exact"},{"name":"fermentation abolished","type":"exact"},{"name":"fermentation abolished during vegetative growth","type":"exact"},{"name":"fermentative metabolism abolished","type":"exact"},{"name":"fermentative metabolism: absent","type":"related"}],"termid":"FYPO:0000431"}


id: GO:0043154
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of a cysteine-type endopeptidase activity involved in the apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of apoptotic process","termid":"GO:0043066"},{"relation_name":"is_a","term_name":"regulation of cysteine-type endopeptidase activity involved in apoptotic process","termid":"GO:0043281"},{"relation_name":"is_a","term_name":"negative regulation of cysteine-type endopeptidase activity","termid":"GO:2000117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cysteine-type endopeptidase activity involved in apoptotic process","secondary_identifiers":["GO:0001719"],"synonyms":[{"name":"down regulation of caspase activity","type":"exact"},{"name":"down-regulation of caspase activity","type":"exact"},{"name":"downregulation of caspase activity","type":"exact"},{"name":"inhibition of caspase activation","type":"narrow"},{"name":"inhibition of caspase activity","type":"narrow"},{"name":"negative regulation of caspase activation","type":"exact"},{"name":"negative regulation of caspase activity","type":"broad"}],"termid":"GO:0043154"}


id: PBO:0089969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"activating signal cointegrator 1 complex subunit, human ASCC1 ortholog","termid":"PBO:0089969"}


id: PBO:0083283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; partially overlaps the verified gene AVT3","termid":"PBO:0083283"}


id: PBO:0046173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ELK1 pseudogene 1","termid":"PBO:0046173"}


id: GO:0071938
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement any form of vitamin A into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Vitamin A is any of several retinoid derivatives of beta-carotene, primarily retinol, retinal, or retinoic acid.","definition_xrefs":["GOC:mah","PMID:16011460","PMID:1924551"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpenoid transport","termid":"GO:0046865"},{"relation_name":"is_a","term_name":"vitamin transport","termid":"GO:0051180"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"vitamin A transport","synonyms":[{"name":"vitamin A uptake and transport","type":"related"}],"termid":"GO:0071938"}


id: PBO:0088413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extracellular leucine-rich repeat domain, receptor L domain-like Ecm33","termid":"PBO:0088413"}


id: PBO:0049713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HAUS augmin like complex subunit 1 pseudogene 1","termid":"PBO:0049713"}


id: FYPO:0003579
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell during one or both meiotic nuclear divisions is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA level during meiotic cell cycle","termid":"FYPO:0006976"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal RNA level during meiosis","synonyms":[{"name":"normal RNA accumulation during meiosis","type":"related"},{"name":"normal RNA level during meiotic nuclear division","type":"exact"},{"name":"normal cellular RNA level during meiosis","type":"exact"},{"name":"normal mRNA level during meiosis","type":"narrow"},{"name":"normal transcript level during meiosis","type":"exact"}],"termid":"FYPO:0003579"}


id: PBO:0083669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endoplasmic reticulum protein; member of DUP380 subfamily of conserved, often subtelomerically-encoded proteins; may contribute to maintenance of ER and nuclear morphology; null mutants have distorted nuclear envelope shape, and discontinuous, misshapen perinuclear ER","termid":"PBO:0083669"}


id: GO:0017164
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete nicotinic acetylcholine receptor-associated protein activity (obsolete GO:0017164)","synonyms":[{"name":"nicotinic acetylcholine receptor-associated protein activity","type":"exact"}],"termid":"GO:0017164"}


id: PBO:0002037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L21 (predicted)","termid":"PBO:0002037"}


id: GO:0120102
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A part of the bacterial-type flagellum that is located at the cytoplasmic side of the MS ring and composed of six membrane proteins (FlhA, FlhB, FliP, FliQ, FliR, and FliO, or orthologs thereof) and three soluble proteins (FliI, FliH, and FliJ, or orthologs thereof) in the cytoplasm. It is responsible for secretion of flagellar type III protein substrates, including the proteins of the flagellar rod, hook, and filament.","definition_xrefs":["PMID:25251856","PMID:24697492","GOC:cilia","PMID:10572114","DOI:10.1002/9780470015902.a0000744.pub4","PMID:12624192"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"bacterial-type flagellum basal body","termid":"GO:0009425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"bacterial-type flagellum secretion apparatus","synonyms":[{"name":"bacterial-type flagellum export apparatus","type":"exact"}],"termid":"GO:0120102"}


id: PBO:0070760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10 pseudogene 16","termid":"PBO:0070760"}


id: GO:0140274
data:
  {"annotated_genes":["SJAG_01224","SJAG_04140","SJAG_01837","SJAG_03048","SJAG_01805","SJAG_00082"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94765],"is_not":false,"summary":null,"term":"GO:0140274"},{"annotations":[107329,112814,98521,86153,89941],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140429"},{"annotations":[112817],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904967"},{"annotations":[112818],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140273"}]},"cv_name":"biological_process","definition":"The cell cycle process where kinetochore microtubule attachment defects are corrected.","definition_xrefs":["PMID:15525536"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_01224":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_03048":null,"SJAG_04140":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"repair of kinetochore microtubule attachment defect","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"correction of kinetochore microtubule attachment defects","type":"exact"},{"name":"repair of kinetochore microtubule attachment defects","type":"exact"}],"termid":"GO:0140274","terms_by_termid":{"GO:0140273":null,"GO:0140274":null,"GO:0140429":null,"GO:1904967":null}}


id: PBO:0028947
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_glutamate-cysteine_ligase_activity","termid":"PBO:0028947"}


id: PBO:0071178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 19","termid":"PBO:0071178"}


id: SO:0002290
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Penelope is a subclass of non_LTR_retrotransposons (SO:0000189). Penelope retrotransposons contains structural features of TR, RT, EN, TR, terminal repeats which can be in tandem or inverse orientation in different Penelope copies. RT is reverse transcriptase. EN is endonuclease.","definition_xrefs":["PMID:23914310"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non_LTR_retrotransposon","termid":"SO:0000189"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Penelope_retrotransposon","synonyms":[{"name":"Penelope retrotransposon","type":"exact"},{"name":"RPP retrotransposon","type":"exact"}],"termid":"SO:0002290"}


id: PBO:0084167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Highly conserved subunit of the mitochondrial pyruvate carrier (MPC); expressed during growth on fermentable carbon sources, and heterodimerizes with Mpc1p to form the fermentative isoform of MPC; MPC localizes to the mitochondrial inner membrane and mediates pyruvate uptake; MPC2 paralog, MPC3, heterodimerizes with Mpc1p to form the respiratory MPC isoform","termid":"PBO:0084167"}


id: PBO:0082671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the dynactin complex; dynactin is required for dynein activity; null mutant exhibits defects in nuclear migration and spindle orientation and has reduced affinity for alcian blue dye; has homology to mammalian dynactin subunit p24","termid":"PBO:0082671"}


id: PBO:0003275
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.3.4.3","termid":"PBO:0003275"}


id: GO:0004949
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a cannabinoid to initiate a change in cell activity. Cannabinoids are a class of diverse chemical compounds that include the endocannabinoids and the phytocannabinoids.","definition_xrefs":["Wikipedia:Cannabinoid","IUPHAR_GPCR:1279","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"cannabinoid receptor activity","synonyms":[{"name":"cannaboid receptor","type":"exact"},{"name":"endocannabinoid receptor activity","type":"narrow"}],"termid":"GO:0004949"}


id: GO:1902043
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of extrinsic apoptotic signaling pathway via death domain receptors.","definition_xrefs":["GOC:TermGenie","PMID:17245429"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of extrinsic apoptotic signaling pathway via death domain receptors","termid":"GO:1902041"},{"relation_name":"is_a","term_name":"positive regulation of extrinsic apoptotic signaling pathway","termid":"GO:2001238"},{"relation_name":"positively_regulates","term_name":"extrinsic apoptotic signaling pathway via death domain receptors","termid":"GO:0008625"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of extrinsic apoptotic signaling pathway via death domain receptors","synonyms":[{"name":"activation of death receptor-mediated apoptosis","type":"narrow"},{"name":"activation of extrinsic apoptotic signaling pathway via death domain receptors","type":"narrow"},{"name":"positive regulation of death receptor-mediated apoptosis","type":"narrow"},{"name":"up regulation of death receptor-mediated apoptosis","type":"narrow"},{"name":"up regulation of extrinsic apoptotic signaling pathway via death domain receptors","type":"exact"},{"name":"up-regulation of death receptor-mediated apoptosis","type":"narrow"},{"name":"up-regulation of extrinsic apoptotic signaling pathway via death domain receptors","type":"exact"},{"name":"upregulation of death receptor-mediated apoptosis","type":"narrow"},{"name":"upregulation of extrinsic apoptotic signaling pathway via death domain receptors","type":"exact"}],"termid":"GO:1902043"}


id: GO:0031347
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of a defense response.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stress","termid":"GO:0080134"},{"relation_name":"regulates","term_name":"defense response","termid":"GO:0006952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of defense response","termid":"GO:0031347"}


id: PBO:0053725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 939","termid":"PBO:0053725"}


id: PBO:0082893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cyclin-dependent kinase inhibitor; activated by environmental stress; interacts with and inhibits the Cdc28p/Cln2p, G1/S phase cyclin-dependent kinase complex but not S-phase, or M-phase complexes; overexpression blocks cells in G1 phase and stabilizes the Cdc28p inhibitor Sic1p, while disruption accelerates the G1/S phase transition; phosphorylated during S phase in a Cdc28p-dependent manner; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and to the nucleus","termid":"PBO:0082893"}


id: PBO:0076101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntaxin 6","termid":"PBO:0076101"}


id: PBO:0074361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"structural maintenance of chromosomes 6","termid":"PBO:0074361"}


id: PBO:0003660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NatB N-acetyltransferase complex regulatory subunit Naa25","termid":"PBO:0003660"}


id: PBO:0092005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Lysine (uuu), mitochondrial","termid":"PBO:0092005"}


id: PBO:0048097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin light chain pseudogene 18","termid":"PBO:0048097"}


id: GO:0051203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The reduction of peptidyl-aspartic acid to form peptidyl-L-aspartyl aldehyde, as found photosystem II P680 chlorophyll A apoprotein.","definition_xrefs":["RESID:AA0373","PMID:15237995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-aspartic acid modification","termid":"GO:0018197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-aspartic acid reduction to form L-aspartyl aldehyde","synonyms":[{"name":"peptidyl-aspartic acid reduction to form L-aspartate-beta-semialdehyde","type":"exact"},{"name":"peptidyl-aspartic acid reduction to form L-beta-formylalanine","type":"exact"}],"termid":"GO:0051203"}


id: GO:0062045
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-lysine + pyruvate= epsilon-amino-alpha-ketocaproic acid (KAC) + alanine.","definition_xrefs":["PMID:27758894","PMID:28330936"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016769"],"is_obsolete":false,"name":"L-lysine alpha-aminotransferase","termid":"GO:0062045"}


id: PATO:0000343
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000343 gametophyte incompatible value (obsolete PATO:0000343)","termid":"PATO:0000343"}


id: PR:O74807
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mhf1 gene.","definition_xrefs":["UniProtKB:O74807","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MHF histone-fold complex subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2D10.16","synonyms":[{"name":"Spom972h-mhf1","type":"exact"}],"termid":"PR:O74807"}


id: GO:0052066
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The invasion by a symbiont of a host organism cell by utilizing the host phagocytosis mechanism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete entry of symbiont into host cell by promotion of host phagocytosis (obsolete GO:0052066)","synonyms":[{"name":"entry of organism into cell of other organism by promotion of phagocytosis in other organism during symbiotic interaction","type":"related"},{"name":"entry of organism into cell of other organism by promotion of phagocytosis in other organism involved in symbiotic interaction","type":"related"},{"name":"entry of organism into host cell by promotion of host phagocytosis","type":"exact"},{"name":"penetration of organism into host cell by promotion of host phagocytosis","type":"exact"},{"name":"penetration of symbiont into host cell by promotion of host phagocytosis","type":"exact"}],"termid":"GO:0052066"}


id: GO:0006194
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of introducing a phosphate group into dIDP, deoxyinosine diphosphate, to produce dITP.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete dIDP phosphorylation (obsolete GO:0006194)","termid":"GO:0006194"}


id: SO:0000686
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosomal translocation whereby the chromosomes carrying non-homologous centromeres may be recovered independently. These chromosomes are described as translocation elements. This occurs for some translocations, particularly but not exclusively, reciprocal translocations.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosomal_translocation","termid":"SO:1000044"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocation_element","synonyms":[{"name":"translocation element","type":"exact"}],"termid":"SO:0000686"}


id: GO:0072316
data:
  {"annotated_genes":["SJAG_02718"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107441],"is_not":false,"summary":null,"term":"GO:0072316"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of alpha-glucans in the ascus wall that contributes to the release of ascospores from the ascus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-glucan catabolic process","termid":"GO:0030980"},{"relation_name":"is_a","term_name":"extracellular polysaccharide catabolic process involved in ascospore release from ascus","termid":"GO:0072000"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02718":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"alpha-glucan catabolic process involved in ascospore release from ascus","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"alpha-glucan breakdown involved in ascospore release from ascus","type":"exact"},{"name":"alpha-glucan catabolism involved in ascospore release from ascus","type":"exact"},{"name":"alpha-glucan degradation involved in ascospore release from ascus","type":"exact"}],"termid":"GO:0072316","terms_by_termid":{"GO:0072316":null}}


id: GO:1990418
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin-like growth factor stimulus.","definition_xrefs":["PMID:21932665"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to hormone","termid":"GO:0009725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to insulin-like growth factor stimulus","termid":"GO:1990418"}


id: PBO:0068046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 351","termid":"PBO:0068046"}


id: GO:0102714
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: gibberellin A12 + 2-oxoglutarate + O2 = gibberellin A14 + succinate + carbon dioxide.","definition_xrefs":["GOC:pz","EC:1.14.11.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"gibberellin A12,oxoglutarate:oxygen oxidoreductase activity","secondary_identifiers":["MetaCyc:RXN-6544"],"termid":"GO:0102714"}


id: PBO:0044598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDB1 and CUL4 associated factor 6","termid":"PBO:0044598"}


id: PBO:0085757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein kinase involved in negative regulation of PolIII transcription; effector kinase of the TOR signaling pathway and phosphorylates Rpc53p to regulate ribosome and tRNA biosynthesis; member of the LAMMER family of protein kinases, which are serine/threonine kinases also capable of phosphorylating tyrosine residues; capable of autophosphorylation","termid":"PBO:0085757"}


id: GO:0070963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the directed killing of a gram-negative bacterium by a neutrophil.","definition_xrefs":["GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neutrophil mediated killing of gram-negative bacterium","termid":"GO:0070951"},{"relation_name":"is_a","term_name":"positive regulation of neutrophil mediated killing of bacterium","termid":"GO:0070962"},{"relation_name":"positively_regulates","term_name":"neutrophil-mediated killing of gram-negative bacterium","termid":"GO:0070945"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of neutrophil mediated killing of gram-negative bacterium","synonyms":[{"name":"activation of neutrophil mediated killing of gram-negative bacterium","type":"narrow"},{"name":"stimulation of neutrophil mediated killing of gram-negative bacterium","type":"narrow"},{"name":"up regulation of neutrophil mediated killing of gram-negative bacterium","type":"exact"},{"name":"up-regulation of neutrophil mediated killing of gram-negative bacterium","type":"exact"},{"name":"upregulation of neutrophil mediated killing of gram-negative bacterium","type":"exact"}],"termid":"GO:0070963"}


id: PBO:0074196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 39 member 6","termid":"PBO:0074196"}


id: PR:Q9US46
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An E3 ubiquitin-protein ligase RNF14 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00750"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E3 ubiquitin-protein ligase itt1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1002.14","secondary_identifiers":["UniProtKB:Q9US46"],"synonyms":[{"name":"RING finger protein itt1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-RNF14","type":"exact"}],"termid":"PR:Q9US46"}


id: PBO:0066494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ret finger protein like 4A pseudogene 5","termid":"PBO:0066494"}


id: PBO:0050115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1 pseudogene 25","termid":"PBO:0050115"}


id: PBO:0003876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C/D containing snoRNA Z30","termid":"PBO:0003876"}


id: FYPO:0001826
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the export of sodium ions out of a cell does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal sodium export","termid":"FYPO:0001721"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished sodium export","synonyms":[{"name":"abolished sodium export during mitotic cell cycle","type":"related"},{"name":"abolished sodium export from cell","type":"exact"},{"name":"abolished sodium ion export","type":"exact"},{"name":"sodium export abolished","type":"exact"},{"name":"sodium export abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0001826"}


id: PBO:0060443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NACC family member 2","termid":"PBO:0060443"}


id: PBO:0070857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L13 pseudogene 10","termid":"PBO:0070857"}


id: PBO:0052508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 22","termid":"PBO:0052508"}


id: FYPO:0000197
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which horsetail movement is abnormal. Horsetail movement is the oscillatory movement of the nucleus that takes place during meiotic prophase I.","definition_xrefs":["GO:0030989","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nucleus positioning","termid":"FYPO:0000517"},{"relation_name":"is_a","term_name":"abnormal transport","termid":"FYPO:0001720"},{"relation_name":"is_a","term_name":"abnormal meiosis I","termid":"FYPO:0003603"},{"relation_name":"is_a","term_name":"abnormal microtubule-based movement","termid":"FYPO:0007163"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"abnormal horsetail movement","synonyms":[{"name":"abnormal dynein-driven meiotic oscillatory nuclear movement","type":"exact"},{"name":"abnormal horsetail nuclear movement","type":"exact"}],"termid":"FYPO:0000197"}


id: GO:0010838
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of keratinocyte proliferation. Keratinocyte proliferation is the multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of keratinocyte proliferation","termid":"GO:0010837"},{"relation_name":"is_a","term_name":"positive regulation of epithelial cell proliferation","termid":"GO:0050679"},{"relation_name":"positively_regulates","term_name":"keratinocyte proliferation","termid":"GO:0043616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of keratinocyte proliferation","termid":"GO:0010838"}


id: FYPO:0003439
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell forms a septum that has branches. For example, the septum may be Y-shaped.","definition_xrefs":["PomBase:mah","PMID:24798735"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal septum morphology during vegetative growth","termid":"FYPO:0002023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000032"],"is_obsolete":false,"name":"branched septum","synonyms":[{"name":"branched septum during mitotic cell cycle","type":"related"},{"name":"branched septum during vegetative growth","type":"exact"}],"termid":"FYPO:0003439"}


id: GO:0005018
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with platelet-derived growth factor isoform PDGF-AA, PDGF-BB or PDGF-AB to initiate a change in cell activity.","definition_xrefs":["PMID:1657917"],"direct_ancestors":[{"relation_name":"is_a","term_name":"platelet-derived growth factor receptor activity","termid":"GO:0005017"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0140096","GO:0016301","GO:0016740","GO:0003824","GO:0004672","GO:0038023","GO:0003674"],"is_obsolete":false,"name":"platelet-derived growth factor alpha-receptor activity","synonyms":[{"name":"PDGF alpha-receptor activity","type":"exact"},{"name":"alphaPDGF receptor activity","type":"exact"}],"termid":"GO:0005018"}


id: GO:0003322
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a pancreatic A cell over time, from its formation to the mature structure. A pancreatic A cell is a cell in the pancreas that secretes glucagon.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glandular epithelial cell development","termid":"GO:0002068"},{"relation_name":"part_of","term_name":"pancreatic A cell differentiation","termid":"GO:0003310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pancreatic A cell development","synonyms":[{"name":"pancreatic alpha cell development","type":"exact"}],"termid":"GO:0003322"}


id: GO:0032660
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of any member of the interleukin-17 family of cytokines.","definition_xrefs":["GOC:mah","PMID:16482511","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"interleukin-17 production","termid":"GO:0032620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of interleukin-17 production","secondary_identifiers":["GO:0045378","GO:1905076"],"synonyms":[{"name":"regulation of CTLA-8 production","type":"exact"},{"name":"regulation of Cytotoxic T-lymphocyte-associated antigen 8 secretion","type":"exact"},{"name":"regulation of IL-17 production","type":"exact"},{"name":"regulation of interleukin-17 biosynthetic process","type":"narrow"},{"name":"regulation of interleukin-17 secretion","type":"narrow"}],"termid":"GO:0032660"}


id: PBO:0069969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1264, pseudogene","termid":"PBO:0069969"}


id: FYPO:0004176
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell during a cellular response to a pheromone that occurs when the cell is subject to nitrogen starvation is lower than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah","PMID:8668157"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during nitrogen starvation","termid":"FYPO:0001152"},{"relation_name":"is_a","term_name":"decreased RNA level during cellular response to pheromone","termid":"FYPO:0003426"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased RNA level during cellular response to pheromone and nitrogen starvation","synonyms":[{"name":"decreased RNA accumulation during cellular response to pheromone and nitrogen starvation","type":"related"},{"name":"decreased transcript level during cellular response to pheromone and nitrogen starvation","type":"exact"},{"name":"reduced RNA level during cellular response to pheromone and nitrogen starvation","type":"exact"}],"termid":"FYPO:0004176"}


id: FYPO:0006441
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is increased during a cellular response to hydroxyurea.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein kinase activity","termid":"FYPO:0002700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0001985","FYPO:0000707","FYPO:0000661"],"is_obsolete":false,"name":"increased protein kinase activity during cellular response to hydroxyurea","synonyms":[{"name":"increased protein kinase activity during cellular response to HU","type":"exact"}],"termid":"FYPO:0006441"}


id: PBO:0029463
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_swollen_elongated_mononucleate_vegetative_cell_with_normally_localized_septum","termid":"PBO:0029463"}


id: GO:0039565
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the activity of host STAT1 (signal transducer and activator of transcription-1) by promoting the ubiquitin-dependent degradation of STAT1, mediated by the proteasome.","definition_xrefs":["PMID:15280488","PMID:16227264","VZ:282"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host STAT1 activity by positive regulation of STAT1 catabolic process (obsolete GO:0039565)","synonyms":[{"name":"promotion by virus of proteosome-dependent STAT1 degradation","type":"exact"},{"name":"suppression by virus of host STAT1 activity by positive promotion of STAT1 proteasome-mediated degradation","type":"exact"},{"name":"targeting STAT1 for proteasome-mediated degradation","type":"exact"}],"termid":"GO:0039565"}


id: GO:0047807
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 6-alkylaminopurine + UDP-D-glucose = 6-alkylamino-7-beta-D-glucosylpurine + H+ + UDP. This reaction is an N-glucosylation event.","definition_xrefs":["EC:2.4.1.118","MetaCyc:CYTOKININ-7-BETA-GLUCOSYLTRANSFERASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"cytokinin 7-beta-glucosyltransferase activity","secondary_identifiers":["RHEA:23272","KEGG_REACTION:R04071"],"synonyms":[{"name":"UDP-glucose-zeatin 7-glucosyltransferase activity","type":"related"},{"name":"UDP-glucose:zeatin 7-glucosyltransferase activity","type":"related"},{"name":"UDPglucose:zeatin 7-glucosyltransferase activity","type":"related"},{"name":"cytokinin 7-b-glucosyltransferase activity","type":"exact"},{"name":"cytokinin 7-glucosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucose-zeatin 7-glucosyltransferase activity","type":"related"}],"termid":"GO:0047807"}


id: PBO:0076581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 5","termid":"PBO:0076581"}


id: PBO:0052795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 35","termid":"PBO:0052795"}


id: PBO:0091425
data:
  {"annotation_feature_type":"gene","cv_name":"subunit_composition","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetrameric(1)","termid":"PBO:0091425"}


id: GO:0034771
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H4 by addition of one methyl group to lysine at position 20 of the histone.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H4-K20 monomethylation (obsolete GO:0034771)","synonyms":[{"name":"histone H4 K20 monomethylation","type":"exact"},{"name":"histone lysine H4 K20 monomethylation","type":"exact"}],"termid":"GO:0034771"}


id: GO:0009602
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a stimulus from a symbiont (an organism living in close physical association with an organism of a different species) is received and converted into a molecular signal. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:hb","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to symbiont","termid":"GO:0009608"},{"relation_name":"is_a","term_name":"biological process involved in interaction with symbiont","termid":"GO:0051702"},{"relation_name":"is_a","term_name":"detection of other organism","termid":"GO:0098543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of symbiont","secondary_identifiers":["GO:0051855"],"synonyms":[{"name":"perception of symbiont","type":"related"},{"name":"recognition of symbiont","type":"exact"}],"termid":"GO:0009602"}


id: GO:0046976
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + histone H3 L-lysine (position 27) = S-adenosyl-L-homocysteine + histone H3 N6-methyl-L-lysine (position 27). This reaction is the addition of a methyl group to the lysine residue at position 27 of the histone H3 protein.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-lysine N-methyltransferase activity","termid":"GO:0016279"},{"relation_name":"is_a","term_name":"histone H3 methyltransferase activity","termid":"GO:0140938"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0140096","GO:0003674","GO:0016740","GO:0008276","GO:0016741","GO:0003824"],"is_obsolete":false,"name":"histone H3K27 methyltransferase activity","secondary_identifiers":["EC:2.1.1.356","Reactome:R-HSA-3240295"],"synonyms":[{"name":"histone H3K27 methylase activity","type":"exact"},{"name":"histone lysine N-methyltransferase activity (H3-K27 specific)","type":"exact"},{"name":"histone methylase activity (H3-K27 specific)","type":"exact"},{"name":"histone methylase activity (H3-K56 specific)","type":"exact"},{"name":"histone methyltransferase activity (H3-K27 specific)","type":"exact"},{"name":"histone-H3K27 methyltransferase activity","type":"exact"}],"termid":"GO:0046976"}


id: FYPO:0003902
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of etoposide than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002682","FYPO:0000139","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"resistance to etoposide","synonyms":[{"name":"resistance to etoposide during mitotic cell cycle","type":"related"},{"name":"resistance to etoposide during vegetative growth","type":"exact"},{"name":"resistant to etoposide","type":"exact"}],"termid":"FYPO:0003902"}


id: GO:0072044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a collecting duct over time, from its formation to the mature structure. The collecting duct responds to vasopressin and aldosterone to regulate water, electrolyte and acid-base balance. It is the final common path through which urine flows before entering the ureter and then emptying into the bladder.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube development","termid":"GO:0035295"},{"relation_name":"part_of","term_name":"kidney development","termid":"GO:0001822"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"collecting duct development","termid":"GO:0072044"}


id: GO:0032549
data:
  {"annotated_genes":["SJAG_00637","SJAG_04030","SJAG_04410","SJAG_03578"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90236,94298,109279],"is_not":false,"summary":null,"term":"GO:0032549"},{"annotations":[111811],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905108"}]},"cv_name":"molecular_function","definition":"Binding to a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside binding","termid":"GO:0001882"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00637":null,"SJAG_03578":null,"SJAG_04030":null,"SJAG_04410":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"ribonucleoside binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0032549","terms_by_termid":{"GO:0032549":null,"GO:1905108":null}}


id: PR:O13791
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- slt1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13791"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein slt1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17G6.13","synonyms":[{"name":"Spom972h-slt1","type":"exact"}],"termid":"PR:O13791"}


id: PBO:0063005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"platelet activating factor acetylhydrolase 1b regulatory subunit 1 pseudogene 2","termid":"PBO:0063005"}


id: PBO:0090007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor for histones, zf-GATA-type Ams2","termid":"PBO:0090007"}


id: PBO:0003198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic chromosome segregation protein Meu6","termid":"PBO:0003198"}


id: PBO:0069645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 922, pseudogene","termid":"PBO:0069645"}


id: PBO:0084106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Haploid-specific gene repressed by a1-alpha2; turned off in sir3 null strains, absence enhances the sensitivity of rad52-327 cells to campothecin almost 100-fold","termid":"PBO:0084106"}


id: PBO:0069637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 914, pseudogene","termid":"PBO:0069637"}


id: FYPO:0000358
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which cells do not form mating projections.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell shape","termid":"FYPO:0001126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"shmoo absent","synonyms":[{"name":"absent mating projection morphology","type":"exact"},{"name":"mating projection absent","type":"exact"},{"name":"mating projection morphology: absent","type":"related"}],"termid":"FYPO:0000358"}


id: PBO:0028109
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_bis(5'-adenosyl)-hexaphosphatase_activity","termid":"PBO:0028109"}


id: PBO:0040839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"B cell acute lymphoblastic leukemia expressed","termid":"PBO:0040839"}


id: GO:0141063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The establishment of epigenetic modifications (imprints) in a plant central cell, leading to an asymmetry between the two maternal alleles and the paternal allele, and differential expression of the corresponding alleles in the developing endosperm. This can happen through heterochromatin formation or differential chromatin loop formation.","definition_xrefs":["PMID:28118754"],"direct_ancestors":[{"relation_name":"is_a","term_name":"genomic imprinting","termid":"GO:0071514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006325"}],"interesting_parent_ids":["GO:0006325","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"epigenetic programming in the central cell","termid":"GO:0141063"}


id: PBO:0005592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiosis specific protein kinase Mug27/Slk1","termid":"PBO:0005592"}


id: GO:0048620
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the hindgut are generated and organized, during the post-embryonic phase.","definition_xrefs":["GOC:rc","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-embryonic animal morphogenesis","termid":"GO:0009886"},{"relation_name":"part_of","term_name":"hindgut morphogenesis","termid":"GO:0007442"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"post-embryonic hindgut morphogenesis","termid":"GO:0048620"}


id: FYPO:0004671
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the vacuole is abolished when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization","termid":"FYPO:0001375"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to vacuole during nitrogen starvation","synonyms":[{"name":"abolished protein localisation to vacuole during nitrogen starvation","type":"exact"},{"name":"abolished protein localization to vacuole during nitrogen depletion","type":"exact"},{"name":"abolished protein localization to vacuole during nitrogen deprivation","type":"exact"},{"name":"protein localization to vacuole abolished during nitrogen starvation","type":"exact"}],"termid":"FYPO:0004671"}


id: FYPO:0002951
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of L-ergothioneine measured in a cell is higher than normal when the cell is in G0 phase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during G0","termid":"FYPO:0002949"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased L-ergothioneine level during G0","synonyms":[{"name":"increased L-ergothioneine accumulation during G0","type":"related"},{"name":"increased L-ergothioneine level during cell quiescence","type":"exact"},{"name":"increased L-ergothioneine level during quiescence","type":"exact"},{"name":"increased ergothioneine level during G0","type":"exact"}],"termid":"FYPO:0002951"}


id: PBO:0056384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase 14","termid":"PBO:0056384"}


id: PBO:0069456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 721, pseudogene","termid":"PBO:0069456"}


id: GO:0032401
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a melanosome to a specific location.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of pigment granule localization","termid":"GO:0051905"},{"relation_name":"part_of","term_name":"melanosome localization","termid":"GO:0032400"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"establishment of melanosome localization","synonyms":[{"name":"establishment of melanosome localisation","type":"exact"}],"termid":"GO:0032401"}


id: GO:0032908
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta1.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transforming growth factor beta production","termid":"GO:0071634"},{"relation_name":"regulates","term_name":"transforming growth factor beta1 production","termid":"GO:0032905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of transforming growth factor beta1 production","synonyms":[{"name":"regulation of TGF-B1 production","type":"exact"},{"name":"regulation of TGFB1 production","type":"exact"},{"name":"regulation of transforming growth factor-beta1 production","type":"exact"}],"termid":"GO:0032908"}


id: PBO:0002274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Brix domain protein Rpf2 (predicted)","termid":"PBO:0002274"}


id: GO:0042751
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism enters and maintains a period of dormancy, similar to hibernation, but that occurs during the summer. It insulates against heat to prevent the harmful effects of the season.","definition_xrefs":["PMID:12443930","Wikipedia:Estivation","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dormancy process","termid":"GO:0022611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"estivation","synonyms":[{"name":"aestivation","type":"exact"}],"termid":"GO:0042751"}


id: PBO:0089963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription regulator Ncb2","termid":"PBO:0089963"}


id: PBO:0067536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 680, pseudogene","termid":"PBO:0067536"}


id: GO:0097330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 5-fluoro-2'-deoxyuridine stimulus. 5-fluoro-2'-deoxyuridine is a pyrimidine 2'-deoxyribonucleoside compound having 5-fluorouracil as the nucleobase; it is used to treat hepatic metastases of gastrointestinal adenocarcinomas and for palliation in malignant neoplasms of the liver and gastrointestinal tract.","definition_xrefs":["GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organonitrogen compound","termid":"GO:0010243"},{"relation_name":"is_a","term_name":"response to organic cyclic compound","termid":"GO:0014070"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to 5-fluoro-2'-deoxyuridine","termid":"GO:0097330"}


id: PBO:0001142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-glutamyltranspeptidase Ggt1","termid":"PBO:0001142"}


id: GO:0140135
data:
  {"annotated_genes":["SJAG_02532","SJAG_05342","SJAG_02877","SJAG_04668"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99906],"is_not":false,"summary":null,"term":"GO:0140135"},{"annotations":[88479,88537,110063],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015275"}]},"cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a monoatomic cation by a channel that opens in response to a mechanical stress.","definition_xrefs":["PMID:22343900","GOC:ha"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic cation channel activity","termid":"GO:0005261"},{"relation_name":"is_a","term_name":"mechanosensitive monoatomic ion channel activity","termid":"GO:0008381"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02532":null,"SJAG_02877":null,"SJAG_04668":null,"SJAG_05342":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"mechanosensitive monoatomic cation channel activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9659380","Reactome:R-HSA-9663363"],"synonyms":[{"name":"mechanically-gated cation channel activity","type":"exact"},{"name":"mechanosensitive cation channel activity","type":"broad"}],"termid":"GO:0140135","terms_by_termid":{"GO:0015275":null,"GO:0140135":null}}


id: PBO:0108914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STAG3 cohesin complex component","termid":"PBO:0108914"}


id: PBO:0056593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAM domain containing glycosylphosphatidylinositol anchor 2","termid":"PBO:0056593"}


id: PATO:0000718
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A viability quality inhering in a population by virtue of the bearer's long term survival inability.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viability","termid":"PATO:0000169"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lethal (sensu genetics)","termid":"PATO:0000718"}


id: PBO:0083673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endoplasmic reticulum zinc transporter; part of a heterodimeric transporter with Zrg17p that transfers zinc from the cytosol to the ER lumen; member of the cation diffusion facilitator family of efflux pumps; localizes to ER and nucleus; mutations affect the cellular distribution of zinc and also confer defects in meiotic recombination between homologous chromatids","termid":"PBO:0083673"}


id: PBO:0070626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 like 1 pseudogene 10","termid":"PBO:0070626"}


id: PBO:0058963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"makorin ring finger protein 6, pseudogene","termid":"PBO:0058963"}


id: PBO:0060230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYADM antisense RNA 2","termid":"PBO:0060230"}


id: GO:0034514
data:
  {"annotated_genes":["SJAG_00564"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84503],"is_not":false,"summary":null,"term":"GO:0034514"}]},"cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of the presence of unfolded proteins in the mitochondrial matrix; results in transcriptional upregulation of nuclear genes encoding mitochondrial stress proteins.","definition_xrefs":["PMID:17849004","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to unfolded protein","termid":"GO:0034620"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00564":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mitochondrial unfolded protein response","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mtUPR","type":"exact"}],"termid":"GO:0034514","terms_by_termid":{"GO:0034514":null}}


id: _global:added_by
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD_extension_relations","definition":"Identifies a gene product that adds the modification.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"added_by","termid":"_global:added_by"}


id: PBO:0075247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 17","termid":"PBO:0075247"}


id: PBO:0049263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gasdermin B","termid":"PBO:0049263"}


id: PBO:0044710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 10 pseudogene 1","termid":"PBO:0044710"}


id: PATO:0000243
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000243 lordosis reflex (obsolete PATO:0000243)","termid":"PATO:0000243"}


id: GO:0072497
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a mesenchymal stem cell. A mesenchymal stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells.","definition_xrefs":["CL:0002452","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stem cell differentiation","termid":"GO:0048863"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal stem cell differentiation","termid":"GO:0072497"}


id: PBO:0090351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial D-lactate dehydrogenase, cytochrome Dld2","termid":"PBO:0090351"}


id: PBO:0088152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-ATPase assembly factor; functions with other V-ATPase assembly factors in the ER to efficiently assemble the V-ATPase membrane sector (V0); protein abundance increases in response to DNA replication stress","termid":"PBO:0088152"}


id: PBO:0060526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear autoantigenic sperm protein","termid":"PBO:0060526"}


id: PBO:0091875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translationally silent transcript from pho1 locus","termid":"PBO:0091875"}


id: FYPO:0007802
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form linear element that are shorter than normal.","definition_xrefs":["PMID:33825974","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal linear element morphology","termid":"FYPO:0004585"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"short linear element","synonyms":[{"name":"decreased linear element length","type":"exact"},{"name":"reduced linear element length","type":"exact"}],"termid":"FYPO:0007802"}


id: PBO:0074723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 80C","termid":"PBO:0074723"}


id: PBO:0090392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-Not complex ubiquitin-protein ligase E3 subunit 4","termid":"PBO:0090392"}


id: PBO:0036430
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ruijs-Aalfs syndrome","termid":"PBO:0036430"}


id: PBO:0002534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MFS family transmembrane transporter Mfs1 (predicted)","termid":"PBO:0002534"}


id: PBO:0085729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in the regulation of cell wall synthesis; proposed to be involved in coordinating cell cycle progression with cell wall integrity","termid":"PBO:0085729"}


id: GO:0010983
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of high-density lipoprotein particle clearance. High-density lipoprotein particle clearance is the process in which a high-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.","definition_xrefs":["GOC:tb","GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of high-density lipoprotein particle clearance","termid":"GO:0010982"},{"relation_name":"is_a","term_name":"positive regulation of lipoprotein particle clearance","termid":"GO:0010986"},{"relation_name":"positively_regulates","term_name":"high-density lipoprotein particle clearance","termid":"GO:0034384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of high-density lipoprotein particle clearance","termid":"GO:0010983"}


id: PBO:0059068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myelin associated oligodendrocyte basic protein","termid":"PBO:0059068"}


id: PBO:0065503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PSPC1 antisense RNA 2","termid":"PBO:0065503"}


id: SO:1000011
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transition of a cytidine to a thymine.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine_transition","termid":"SO:1000010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C_to_T_transition","synonyms":[{"name":"C to T transition","type":"exact"}],"termid":"SO:1000011"}


id: PBO:0046938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 53 member C","termid":"PBO:0046938"}


id: PBO:0060451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetylglucosamine kinase","termid":"PBO:0060451"}


id: GO:1900204
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process that is involved in metanephric collecting duct development.","definition_xrefs":["GOC:mtg_kidney_jan10","GOC:TermGenie","GOC:yaf","PMID:17314325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic process involved in development","termid":"GO:1902742"},{"relation_name":"part_of","term_name":"metanephric collecting duct development","termid":"GO:0072205"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"apoptotic process involved in metanephric collecting duct development","synonyms":[{"name":"apoptosis of metanephric collecting duct development","type":"narrow"},{"name":"apoptotic cell death of metanephric collecting duct development","type":"exact"},{"name":"apoptotic process of metanephric collecting duct development","type":"exact"},{"name":"apoptotic program of metanephric collecting duct development","type":"narrow"},{"name":"apoptotic programmed cell death of metanephric collecting duct development","type":"exact"},{"name":"programmed cell death by apoptosis of metanephric collecting duct development","type":"exact"},{"name":"signaling (initiator) caspase activity of metanephric collecting duct development","type":"related"},{"name":"type I programmed cell death of metanephric collecting duct development","type":"narrow"}],"termid":"GO:1900204"}


id: PBO:0076528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 41","termid":"PBO:0076528"}


id: GO:2000772
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellular senescence.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular metabolic process","termid":"GO:0031323"},{"relation_name":"regulates","term_name":"cellular senescence","termid":"GO:0090398"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular senescence","termid":"GO:2000772"}


id: PBO:0111617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CLRC complex subunit, cullin 4","termid":"PBO:0111617"}


id: PBO:0016934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium transport regulatory factor (predicted)","termid":"PBO:0016934"}


id: PBO:0077373
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 114","termid":"PBO:0077373"}


id: PBO:0068026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 331","termid":"PBO:0068026"}


id: GO:0140053
data:
  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id: MOD:01720
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  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a residue with the Proteome Sciences TMT6plex-126 reporter+balance group.","definition_xrefs":["Unimod:737"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TMT6plex reporter+balance reagent acylated residue","termid":"MOD:01715"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"TMT6plex-126 reporter+balance reagent acylated residue","synonyms":[{"name":"3-[(2,6-dimethylpiperidin-1-yl)acetyl]amino)propanoyl","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"}],"termid":"MOD:01720"}


id: PBO:0048564
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgi associated, gamma adaptin ear containing, ARF binding protein 2","termid":"PBO:0048564"}


id: GO:0050325
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + NAD+ + tauropine = H+ + NADH + pyruvate + taurine.","definition_xrefs":["EC:1.5.1.23","RHEA:12580"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor","termid":"GO:0016646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"tauropine dehydrogenase activity","secondary_identifiers":["MetaCyc:TAUROPINE-DEHYDROGENASE-RXN","KEGG_REACTION:R01683"],"synonyms":[{"name":"2-N-(D-1-carboxyethyl)taurine:NAD+ oxidoreductase (taurine-forming)","type":"related"},{"name":"N2-(D-1-carboxyethyl)taurine:NAD+ oxidoreductase (taurine-forming)","type":"related"}],"termid":"GO:0050325"}


id: GO:0140024
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of an endosome towards the plus end of a microtubule, mediated by motor proteins. This process begins with the attachment of an endosome to a microtubule, and ends when the endosome reaches its final destination.","definition_xrefs":["PMID:24803650","PMID:25706234"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plus-end-directed vesicle transport along microtubule","termid":"GO:0072383"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"plus-end-directed endosome transport along mitotic spindle midzone microtubule","termid":"GO:0140024"}


id: PBO:0075333
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorbin and SH3 domain containing 2","termid":"PBO:0075333"}


id: GO:0075153
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its transmembrane receptor-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transmembrane receptor-mediated signal transduction in response to host (obsolete GO:0075153)","synonyms":[{"name":"regulation of symbiont transmembrane receptor-mediated signal transduction in response to host","type":"exact"}],"termid":"GO:0075153"}


id: PBO:0030509
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_protein_kinase_inhibitor","termid":"PBO:0030509"}


id: PBO:0074745
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 105A","termid":"PBO:0074745"}


id: PBO:0034275
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-obsolete_preceded_by","termid":"PBO:0034275"}


id: GO:1990146
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a rhabdomere.","definition_xrefs":["PMID:8335687","GOC:sart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization","termid":"GO:0008104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to rhabdomere","termid":"GO:1990146"}


id: PBO:0041695
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium homeostasis modulator 1","termid":"PBO:0041695"}


id: PBO:0031253
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_regulation_of_cytokinesis","termid":"PBO:0031253"}


id: PBO:0014300
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S. pombe specific protein","termid":"PBO:0014300"}


id: GO:0019481
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of L-alanine by transamination.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-alanine catabolic process","termid":"GO:0042853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"L-alanine catabolic process, by transamination","secondary_identifiers":["MetaCyc:ALANINE-DEG3-PWY"],"synonyms":[{"name":"L-alanine breakdown, by transamination","type":"exact"},{"name":"L-alanine degradation, by transamination","type":"exact"}],"termid":"GO:0019481"}


id: PBO:0036111
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_targeting_during_vegetative_growth","termid":"PBO:0036111"}


id: PATO:0001809
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  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A pattern quality inhering in a bearer by virtue of the bearer's being compact or dense in arrangement.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regular spatial pattern","termid":"PATO:0000440"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tight","termid":"PATO:0001809"}


id: FYPO:0001547
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to zinc ion starvation is higher than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0006551","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased RNA level during cellular response to zinc ion starvation","synonyms":[{"name":"increased RNA accumulation during cellular response to zinc ion starvation","type":"related"},{"name":"increased RNA level during cellular response to zinc ion depletion","type":"exact"},{"name":"increased RNA level during cellular response to zinc ion deprivation","type":"exact"},{"name":"increased RNA level during cellular response to zinc ion limitation","type":"exact"},{"name":"increased RNA level during cellular response to zinc ion starvation during mitotic cell cycle","type":"related"},{"name":"increased RNA level during cellular response to zinc ion starvation during vegetative growth","type":"exact"},{"name":"increased RNA level during cellular response to zinc starvation","type":"exact"},{"name":"increased mRNA level during cellular response to zinc ion starvation","type":"narrow"},{"name":"increased transcript level during cellular response to zinc ion starvation","type":"exact"}],"termid":"FYPO:0001547"}


id: PBO:0001971
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin C-terminal hydrolase Ubp6","termid":"PBO:0001971"}


id: PBO:0109615
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA:amino acid N-acyltransferase, pseudogene","termid":"PBO:0109615"}


id: PBO:0080097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"undifferentiated embryonic cell transcription factor 1","termid":"PBO:0080097"}


id: PBO:0071586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a pseudogene 2","termid":"PBO:0071586"}


id: PBO:0053585
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 608","termid":"PBO:0053585"}


id: PBO:0029157
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_trehalose_level_in_spore","termid":"PBO:0029157"}


id: GO:0033561
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that modulates the rate or extent of water loss from an organism via the skin.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of water loss via skin (obsolete GO:0033561)","synonyms":[{"name":"skin barrier function","type":"related"}],"termid":"GO:0033561"}


id: PBO:0113512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Type V myosin motor involved in actin-based transport of cargos; required for the polarized delivery of secretory vesicles, the vacuole, late Golgi elements, peroxisomes, lipid droplets, and the mitotic spindle; effector of Ypt11p, a rab-type small GTPase; MYO2 has a paralog, MYO4, that arose from the whole genome duplication","termid":"PBO:0113512"}


id: PBO:0091757
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"II:g.2053516_2053517insC","termid":"PBO:0091757"}


id: PBO:0064339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDX1 associated lncRNA, upregulator of transcription","termid":"PBO:0064339"}


id: PBO:0083328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps ORFs SPT5/YML010W and YML009W-B","termid":"PBO:0083328"}


id: PBO:0067232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 303, pseudogene","termid":"PBO:0067232"}


id: GO:0070102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by interleukin-6 binding to a receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:add","GOC:signaling","GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"},{"relation_name":"part_of","term_name":"cellular response to interleukin-6","termid":"GO:0071354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"interleukin-6-mediated signaling pathway","synonyms":[{"name":"IL-6-mediated signaling pathway","type":"related"},{"name":"interleukin-6-mediated signalling pathway","type":"exact"}],"termid":"GO:0070102"}


id: PBO:0062168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily K member 11 pseudogene","termid":"PBO:0062168"}


id: PBO:0064582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POTE ankyrin domain family member C","termid":"PBO:0064582"}


id: PBO:0087660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Iml1p/SEACIT complex; SEACIT (Iml1p-Npr2p-Npr3p) is a subcomplex of SEAC, a coatomer-related complex that associates dynamically with the vacuole; Npr3p may have a structural or regulatory role, supporting Iml1p function as a GAP for the Rag family GTPase Gtr1p, and leading to inhibition of TORC1 signaling in response to amino acid deprivation; SEACIT is required for non-nitrogen-starvation-induced autophagy; null mutant has meiotic defects; human NPRL3 homolog","termid":"PBO:0087660"}


id: FYPO:0001014
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cellular membrane organization is abnormal when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal membrane organization","termid":"FYPO:0001013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal membrane organization during nitrogen starvation","synonyms":[{"name":"abnormal cellular membrane organization during nitrogen starvation","type":"exact"},{"name":"abnormal membrane organisation during nitrogen starvation","type":"exact"},{"name":"abnormal membrane organization during nitrogen depletion","type":"exact"},{"name":"abnormal membrane organization during nitrogen deprivation","type":"exact"}],"termid":"FYPO:0001014"}


id: PBO:0016933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Mug68","termid":"PBO:0016933"}


id: PR:O74453
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A p21-activated protein kinase-interacting protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04409"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shk1 kinase-binding protein 15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16C4.08c","secondary_identifiers":["UniProtKB:O74453"],"synonyms":[{"name":"Spom972h-PAK1IP1","type":"exact"}],"termid":"PR:O74453"}


id: GO:1990308
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type-I dockerin domain of a protein. Type-I dockerin domain is the binding partner of type-1 cohesin domain.","definition_xrefs":["PMID:23195689","PMID:24080387","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"type-I dockerin domain binding","termid":"GO:1990308"}


id: PBO:0060065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 12","termid":"PBO:0060065"}


id: PBO:0038636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA thioesterase 1","termid":"PBO:0038636"}


id: GO:0031528
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the plasma membrane surrounding a microvillus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell projection membrane","termid":"GO:0031253"},{"relation_name":"part_of","term_name":"microvillus","termid":"GO:0005902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"microvillus membrane","termid":"GO:0031528"}


id: PBO:0076003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STIM1 antisense RNA 1","termid":"PBO:0076003"}


id: PBO:0083451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene CPR6","termid":"PBO:0083451"}


id: PBO:0016877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase feature property types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uniprot_identifier","termid":"PBO:0016877"}


id: GO:0008957
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-phenylacetaldehyde + H2O + NAD+ = 2-phenylacetate + 2 H+ + NADH.","definition_xrefs":["RHEA:21392"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde dehydrogenase (NAD+) activity","termid":"GO:0004029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"phenylacetaldehyde dehydrogenase (NAD+) activity","secondary_identifiers":["MetaCyc:PHENDEHYD-RXN","EC:1.2.1.39","UM-BBD_reactionID:r0035"],"synonyms":[{"name":"phenylacetaldehyde:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0008957"}


id: PBO:0070695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L8 pseudogene 4","termid":"PBO:0070695"}


id: FYPO:0002677
data:
  {"alleles_by_uniquename":{"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_01787:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01787","name":"pck1delta","uniquename":"SJAG_01787:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_04551:allele-2":{"allele_type":"amino_acid_insertion","description":"82-NITCIYDLDIIINPYNFNEVYIYEE-105","gene_uniquename":"SJAG_04551","name":"Pmk1Sj(ins82-105)","uniquename":"SJAG_04551:allele-2"},"SJAG_04551:allele-4":{"allele_type":"partial_amino_acid_deletion","description":"Pmk1 from S. pombe with deleted residues 82-105","gene_uniquename":"SJAG_04551","name":"Pmk1Sp(delta82-105)","uniquename":"SJAG_04551:allele-4"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115266,115258],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002678"},{"annotations":[115265],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002033"},{"annotations":[115257,115261],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001838"},{"annotations":[115254],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002680"},{"annotations":[115251],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001038"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the phosphorylation of one or more specific proteins is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein modification","termid":"FYPO:0002494"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00610":null,"SJAG_01787":null,"SJAG_02592":null,"SJAG_04551":null},"genotype_count":5,"genotypes_by_uniquename":{"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sj(ins82-105)(82-NITCIYDLDIIINPYNFNEVYIYEE-105)","display_uniquename":"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-2","expression":"Not assayed or wild type"}]}]},"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sp(delta82-105)(Pmk1 from S. pombe with deleted residues 82-105 Δaa)","display_uniquename":"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-4","expression":"Not assayed or wild type"}]}]},"pck1delta":{"display_name":"pck1delta","display_uniquename":"pck1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]}]},"pck2delta":{"display_name":"pck2delta","display_uniquename":"pck2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00610:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002274","FYPO:0000002","FYPO:0001985","FYPO:0002494"],"is_obsolete":false,"name":"abnormal protein phosphorylation","references_by_uniquename":{"PMID:34198697":null},"single_locus_annotated_genes":["SJAG_01787","SJAG_04551","SJAG_02592","SJAG_00610"],"single_locus_genotype_uniquenames":["Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","sty1delta","pck2delta","Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","pck1delta"],"termid":"FYPO:0002677","terms_by_termid":{"FYECO:0000207":null,"FYPO:0001038":null,"FYPO:0001838":null,"FYPO:0002033":null,"FYPO:0002678":null,"FYPO:0002680":null}}


id: PBO:0082868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Core subunit of the RENT complex; involved in nucleolar silencing and telophase exit; stimulates transcription by RNA polymerase I and regulates nucleolar structure; NET1 has a paralog, TOF2, that arose from the whole genome duplication","termid":"PBO:0082868"}


id: CHEBI:16414
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-valine","termid":"CHEBI:16414"}


id: FYPO:0001992
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a cell contains a single septum, has one nucleus, is elongated, and is inviable. The septum is in an abnormal location, and the nucleus is located in one compartment of the septated cell.","definition_xrefs":["PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable mononucleate vegetative cell with mislocalized septum and anucleate compartment","termid":"FYPO:0001226"},{"relation_name":"is_a","term_name":"inviable elongated mononucleate monoseptate vegetative cell","termid":"FYPO:0001917"},{"relation_name":"is_a","term_name":"inviable elongated vegetative cell with abnormal septum","termid":"FYPO:0002889"},{"relation_name":"output_of","term_name":"cut","termid":"FYPO:0000229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000337"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000641","FYPO:0001320","FYPO:0000337","FYPO:0000032","FYPO:0000002","FYPO:0000004","FYPO:0005447","FYPO:0000005","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"inviable elongated mononucleate vegetative cell with mislocalized septum","secondary_identifiers":["FYPO:0001993"],"synonyms":[{"name":"inviable elongated mononucleate cell with abnormal septum location","type":"exact"},{"name":"inviable elongated mononucleate cell with abnormal septum position","type":"exact"},{"name":"inviable elongated mononucleate cell with asymmetric septum","type":"exact"},{"name":"inviable elongated mononucleate cell with asymmetrically located septum","type":"exact"},{"name":"inviable elongated mononucleate cell with mislocalised septum","type":"exact"},{"name":"inviable elongated mononucleate cell with mislocalized septum during vegetative growth","type":"exact"},{"name":"inviable elongated mononucleate monoseptate vegetative cell with mislocalized septum","type":"exact"},{"name":"inviable elongated mononucleate vegetative cell with mislocalized septum and mislocalized nucleus","type":"exact"},{"name":"inviable elongated mononucleate vegetative cell with mislocalized septum during mitotic cell cycle","type":"related"},{"name":"inviable elongated mononucleate vegetative cell with misplaced septum","type":"exact"},{"name":"inviable elongated mononucleate vegetative cell with single mislocalized septum","type":"exact"},{"name":"inviable long mononucleate cell with mislocalized septum","type":"exact"},{"name":"inviable vegetative elongated mononucleate cell with mislocalized septum","type":"exact"},{"name":"lethal; elongated mononucleate vegetative cell with mislocalized septum","type":"exact"}],"termid":"FYPO:0001992"}


id: FYPO:0006425
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cohesion between sister chromatids is normal (i.e. indistinguishable from wild type) in centromeric regions during the first meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal meiotic sister chromatid cohesion at centromere","termid":"FYPO:0004667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal meiotic sister chromatid cohesion at centromere during meiosis I","synonyms":[{"name":"normal meiotic sister chromatid cohesion at centromere during first meiotic nuclear division","type":"exact"},{"name":"normal meiotic sister chromatid cohesion, centromeric, during meiosis I","type":"exact"},{"name":"normal sister chromatid cohesion at centromere during meiosis I","type":"exact"}],"termid":"FYPO:0006425"}


id: GO:0006451
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The continuation of translation beyond a stop codon by the use of a special tRNA that recognizes the UAG and UGA codons as modified amino acids, rather than as termination codons.","definition_xrefs":["PMID:11179232","GOC:jsg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translational elongation","termid":"GO:0006414"},{"relation_name":"is_a","term_name":"regulation of translation","termid":"GO:0006417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"translational readthrough","synonyms":[{"name":"natural nonsense suppression","type":"related"}],"termid":"GO:0006451"}


id: PBO:0043711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6A2","termid":"PBO:0043711"}


id: GO:0097712
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which vesicles formed at the trans-Golgi network are directed to the plasma membrane surrounding the base of the cilium, including the ciliary pocket, mediated by molecules at the vesicle membrane and target membrane surfaces.","definition_xrefs":["PMID:24814148","GOC:cilia","PMID:23351793","PMID:26485645","PMID:20106869"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle targeting, to, from or within Golgi","termid":"GO:0048199"},{"relation_name":"part_of","term_name":"cilium assembly","termid":"GO:0060271"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0006810","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"vesicle targeting, trans-Golgi to periciliary membrane compartment","termid":"GO:0097712"}


id: GO:1903365
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of fear response.","definition_xrefs":["GOC:mr","GO_REF:0000058","PMID:8677262","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"is_a","term_name":"regulation of response to stress","termid":"GO:0080134"},{"relation_name":"regulates","term_name":"fear response","termid":"GO:0042596"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of fear response","synonyms":[{"name":"regulation of physiological fear response","type":"exact"}],"termid":"GO:1903365"}


id: PBO:0052735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 27","termid":"PBO:0052735"}


id: PBO:0029171
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_rapamycin","termid":"PBO:0029171"}


id: GO:0010249
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving auxin conjugates, a bound form of auxin.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxin metabolic process","termid":"GO:0009850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"auxin conjugate metabolic process","synonyms":[{"name":"auxin conjugate metabolism","type":"exact"}],"termid":"GO:0010249"}


id: GO:0032766
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterotrimeric protein complex formed by the association of NHE3, E3KARP and alpha-actinin upon an increase in calcium ion concentration; found in clusters localized on plasma membrane and in intracellular compartments.","definition_xrefs":["PMID:11948184"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"NHE3/E3KARP/ACTN4 complex","synonyms":[{"name":"NHE3/E3KARP/alpha-actinin complex","type":"exact"}],"termid":"GO:0032766"}


id: PBO:0035827
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_movement_within_plasma_membrane_during_vegetative_growth","termid":"PBO:0035827"}


id: PBO:0063059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"promoter of CDKN1A antisense DNA damage activated RNA","termid":"PBO:0063059"}


id: PR:Q9USR2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A U4/U6.U5 tri-snRNP-associated protein 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02581","PANTHER:PTHR24006:SF31"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA-splicing protein ubp10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC577.07","secondary_identifiers":["UniProtKB:Q9USR2"],"synonyms":[{"name":"Spom972h-USP39","type":"exact"},{"name":"inactive ubiquitin-specific-processing protease 10 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USR2"}


id: PBO:0000318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gluconate transporter inducer Gti1","termid":"PBO:0000318"}


id: GO:0006890
data:
  {"annotated_genes":["SJAG_02586","SJAG_04070","SJAG_04340","SJAG_00192","SJAG_02482","SJAG_02418","SJAG_04402","SJAG_04474","SJAG_01927","SJAG_04569","SJAG_04592","SJAG_04956","SJAG_01166","SJAG_01508","SJAG_04391","SJAG_01940","SJAG_05209","SJAG_04701","SJAG_01516","SJAG_05030","SJAG_02419","SJAG_02204","SJAG_02234","SJAG_00557","SJAG_03933"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86718,89021,89269,89353,89773,90530,93893,94598,94689,94853,95605,96154,100261,103253,104155,104551,107777,109765,109891,110257,110270,112513,113523,114730],"is_not":false,"summary":null,"term":"GO:0006890"},{"annotations":[109758],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:2000156"}]},"cv_name":"biological_process","definition":"The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG.","definition_xrefs":["PMID:16510524","ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi vesicle transport","termid":"GO:0048193"}],"gene_count":25,"genes_by_uniquename":{"SJAG_00192":null,"SJAG_00557":null,"SJAG_01166":null,"SJAG_01508":null,"SJAG_01516":null,"SJAG_01927":null,"SJAG_01940":null,"SJAG_02204":null,"SJAG_02234":null,"SJAG_02418":null,"SJAG_02419":null,"SJAG_02482":null,"SJAG_02586":null,"SJAG_03933":null,"SJAG_04070":null,"SJAG_04340":null,"SJAG_04391":null,"SJAG_04402":null,"SJAG_04474":null,"SJAG_04569":null,"SJAG_04592":null,"SJAG_04701":null,"SJAG_04956":null,"SJAG_05030":null,"SJAG_05209":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0048220"],"synonyms":[{"name":"cis-Golgi to rough ER transport","type":"exact"},{"name":"cis-Golgi to rough ER vesicle-mediated transport","type":"exact"},{"name":"cis-Golgi to rough endoplasmic reticulum transport","type":"exact"},{"name":"cis-Golgi to rough endoplasmic reticulum vesicle-mediated transport","type":"exact"},{"name":"retrograde (Golgi to ER) transport","type":"exact"},{"name":"retrograde transport, Golgi to ER","type":"exact"},{"name":"retrograde transport, Golgi to endoplasmic reticulum","type":"exact"},{"name":"retrograde vesicle-mediated transport, Golgi to ER","type":"exact"}],"termid":"GO:0006890","terms_by_termid":{"GO:0006890":null,"GO:2000156":null}}


id: PR:P87232
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mrpl4 gene.","definition_xrefs":["UniProtKB:P87232","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"54S ribosomal protein L4, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4G3.06c","synonyms":[{"name":"Spom972h-mrpl4","type":"exact"}],"termid":"PR:P87232"}


id: PBO:0017948
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae SEC12","termid":"PBO:0017948"}


id: GO:0005276
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of a solute or solutes from one side of a vesicle membrane to the other according to the reaction: H+(in) + amino acid(out) = H+(out) + amino acid(in).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete vesicular amino acid:proton antiporter activity (obsolete GO:0005276)","synonyms":[{"name":"hydrogen:vesicular amine antiporter activity","type":"exact"},{"name":"vesicular hydrogen:amino acid antiporter activity","type":"exact"}],"termid":"GO:0005276"}


id: GO:0061424
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter and activates or increases the frequency, rate or extent of peroxisome organization.","definition_xrefs":["PMID:7500953","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of peroxisome organization by positive regulation of transcription from RNA polymerase II promoter (obsolete GO:0061424)","synonyms":[{"name":"positive regulation of peroxisome organisation by positive regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:0061424"}


id: GO:0043308
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated exocytosis of secretory granules containing preformed mediators such as major basic protein, eosinophil peroxidase, and eosinophil cationic protein by an eosinophil.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte degranulation","termid":"GO:0043299"},{"relation_name":"part_of","term_name":"eosinophil activation involved in immune response","termid":"GO:0002278"},{"relation_name":"part_of","term_name":"eosinophil mediated immunity","termid":"GO:0002447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"eosinophil degranulation","synonyms":[{"name":"eosinophil granule exocytosis","type":"exact"}],"termid":"GO:0043308"}


id: GO:0009850
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving auxins, a group of plant hormones that regulate aspects of plant growth.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hormone metabolic process","termid":"GO:0042445"},{"relation_name":"is_a","term_name":"cellular metabolic process","termid":"GO:0044237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"auxin metabolic process","synonyms":[{"name":"auxin metabolism","type":"exact"}],"termid":"GO:0009850"}


id: PBO:0055577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3013","termid":"PBO:0055577"}


id: GO:0072129
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of a renal capsule from unspecified parts. The renal capsule is the tough fibrous layer surrounding the kidney, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage. During development, it comprises a single layer of flattened cells that lie just above the cortical stroma and the condensed mesenchyme of the nephrogenic zone. It is in this region that the early stages of nephron induction and formation of new generations ureteric bud branches occur, as the kidney expands.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"renal capsule morphogenesis","termid":"GO:0072128"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"renal capsule formation","termid":"GO:0072129"}


id: FYPO:0004789
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which telomeres have fused, forming circular chromosomes, during G2 phase of the mitotic cell cycle.","definition_xrefs":["PMID:25533340","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"circularized chromosome","termid":"FYPO:0002702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000641"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000654","FYPO:0000661","FYPO:0000707","FYPO:0000652","FYPO:0001320","FYPO:0000641","FYPO:0000002"],"is_obsolete":false,"name":"circularized chromosome during mitotic G2 phase","synonyms":[{"name":"circular chromosomes during mitotic G2 phase","type":"exact"},{"name":"circularised chromosome during mitotic G2 phase","type":"exact"},{"name":"circularized chromosome during G2 during vegetative growth","type":"exact"},{"name":"fused telomeres during mitotic G2 phase","type":"related"},{"name":"telomere end fusion during mitotic G2 phase","type":"related"},{"name":"telomere fusion during mitotic G2 phase","type":"related"},{"name":"telomeres fused during mitotic G2 phase","type":"related"}],"termid":"FYPO:0004789"}


id: PBO:0043254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"claudin 12","termid":"PBO:0043254"}


id: GO:1901729
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of monensin A.","definition_xrefs":["GOC:TermGenie","UniPathway:UPA00178","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol catabolic process","termid":"GO:0046164"},{"relation_name":"is_a","term_name":"carboxylic acid catabolic process","termid":"GO:0046395"},{"relation_name":"is_a","term_name":"monensin A metabolic process","termid":"GO:1901728"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"monensin A catabolic process","synonyms":[{"name":"monensin A breakdown","type":"exact"},{"name":"monensin A catabolism","type":"exact"},{"name":"monensin A degradation","type":"exact"},{"name":"monensin breakdown","type":"exact"},{"name":"monensin catabolism","type":"exact"},{"name":"monensin degradation","type":"exact"}],"termid":"GO:1901729"}


id: GO:0045494
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process preventing the degeneration of the photoreceptor, a specialized cell type that is sensitive to light.","definition_xrefs":["GOC:bf","GOC:rl","CL:0000210"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"},{"relation_name":"part_of","term_name":"retina homeostasis","termid":"GO:0001895"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"photoreceptor cell maintenance","termid":"GO:0045494"}


id: GO:0006460
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-prolyl isomerase B reaction (obsolete GO:0006460)","synonyms":[{"name":"peptidyl-prolyl isomerase B reaction","type":"exact"}],"termid":"GO:0006460"}


id: GO:0019171
data:
  {"annotated_genes":["SJAG_00305","SJAG_04107"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[98186],"is_not":false,"summary":null,"term":"GO:0019171"},{"annotations":[96875],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004317"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a (3R)-hydroxyacyl-[acyl-carrier-protein] = a (2E)-enoyl-[acyl-carrier-protein] + H2O.","definition_xrefs":["RHEA:13097"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00305":null,"SJAG_04107":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"(3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:4.2.1.59","MetaCyc:4.2.1.59-RXN"],"synonyms":[{"name":"(3R)-3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity","type":"related"},{"name":"3-hydroxyacyl-ACP dehydratase activity","type":"exact"},{"name":"3-hydroxyacyl-[acyl-carrier protein] dehydratase activity","type":"exact"},{"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity","type":"broad"}],"termid":"GO:0019171","terms_by_termid":{"GO:0004317":null,"GO:0019171":null}}


id: MOD:01765
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a serine residue with the Proteome Sciences TMT6plex-131 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TMT6plex reporter+balance reagent O-acylated residue","termid":"MOD:01719"},{"relation_name":"is_a","term_name":"TMT6plex-131 reporter+balance reagent acylated residue","termid":"MOD:01760"},{"relation_name":"is_a","term_name":"O3-acylated L-serine","termid":"MOD:02003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"TMT6plex-131 reporter+balance reagent O3-acylated serine","synonyms":[{"name":"3-[(2,6-dimethylpiperidin-1-yl)acetyl]amino)propanoyl","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"}],"termid":"MOD:01765"}


id: PBO:0027589
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_protein_tyrosine_phosphorylation_during_cellular_response_to_salt_stress","termid":"PBO:0027589"}


id: PR:O59816
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR23151:SF9","OMA:SCHPO04244","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC794.07","secondary_identifiers":["UniProtKB:O59816"],"synonyms":[{"name":"PDC-E2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PDCE2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-DLAT","type":"exact"},{"name":"dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"pyruvate dehydrogenase complex component E2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O59816"}


id: PBO:0077203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TM4SF19 antisense RNA 1","termid":"PBO:0077203"}


id: PBO:0050188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 5","termid":"PBO:0050188"}


id: GO:0060063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of the specialized region of the embryonic shield of the embryo that acts as the main signaling center establishing the teleost body plan.","definition_xrefs":["PMID:9442883","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Spemann organizer formation","termid":"GO:0060061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Spemann organizer formation at the embryonic shield","synonyms":[{"name":"Spemann's organizer formation at the embryonic shield","type":"exact"},{"name":"Spemann-Mangold organizer formation at the embryonic shield","type":"exact"}],"termid":"GO:0060063"}


id: PBO:0038914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adhesion G protein-coupled receptor F4","termid":"PBO:0038914"}


id: PBO:0081628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 558","termid":"PBO:0081628"}


id: PBO:0070607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 75","termid":"PBO:0070607"}


id: RO:0002616
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"related_via_evidence_or_inference_to","termid":"RO:0002616"}


id: PBO:0089961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTB/POZ domain","termid":"PBO:0089961"}


id: GO:0072296
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the loop of Henle of the metanephric nephron acquires its identity.","definition_xrefs":["GOC:bf","GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of loop of Henle identity","termid":"GO:0072086"},{"relation_name":"is_a","term_name":"specification of metanephric nephron tubule identity","termid":"GO:0072293"},{"relation_name":"part_of","term_name":"metanephric loop of Henle development","termid":"GO:0072236"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of metanephric loop of Henle identity","synonyms":[{"name":"specification of metanephric intermediate tubule identity","type":"exact"}],"termid":"GO:0072296"}


id: GO:0033291
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex composed of the large and small ribosomal subunits, methionyl-initiatior tRNA, and the capped mRNA. The initiator tRNA is positioned at the ribosomal P site at the AUG codon corresponding to the beginning of the coding region.","definition_xrefs":["PMID:15145049","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translation initiation complex","termid":"GO:0070992"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"eukaryotic 80S initiation complex","termid":"GO:0033291"}


id: PBO:0013765
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vps38 was previously annotated as atg14","termid":"PBO:0013765"}


id: GO:0051603
data:
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id: FYPO:0000333
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id: MOD:01598
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id: GO:1904297
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id: PBO:0034588
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id: GO:0006564
data:
  {"annotated_genes":["SJAG_02791","SJAG_04964","SJAG_04449","SJAG_02313"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88349,96398,106272,113039],"is_not":false,"summary":null,"term":"GO:0006564"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.","definition_xrefs":["GOC:jsg","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-serine metabolic process","termid":"GO:0006563"},{"relation_name":"is_a","term_name":"serine family amino acid biosynthetic process","termid":"GO:0009070"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02313":null,"SJAG_02791":null,"SJAG_04449":null,"SJAG_04964":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"L-serine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:SERSYN-PWY"],"synonyms":[{"name":"L-serine anabolism","type":"exact"},{"name":"L-serine biosynthesis","type":"exact"},{"name":"L-serine formation","type":"exact"},{"name":"L-serine synthesis","type":"exact"}],"termid":"GO:0006564","terms_by_termid":{"GO:0006564":null}}


id: PBO:0069459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 724, pseudogene","termid":"PBO:0069459"}


id: PBO:0079100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSSK6 activating cochaperone","termid":"PBO:0079100"}


id: PBO:0068714
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4atac small nuclear 3, pseudogene","termid":"PBO:0068714"}


id: PBO:0054171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1544","termid":"PBO:0054171"}


id: PBO:0003743
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human c19orf29 ortholog","termid":"PBO:0003743"}


id: PBO:0029140
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_level_in_autophagosome","termid":"PBO:0029140"}


id: PBO:0074216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 44 member 2","termid":"PBO:0074216"}


id: MOD:00562
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Isotopic label","definition_xrefs":["PubMed:12766232","Unimod:212"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(2)H deuterium tagged reagent","termid":"MOD:01431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-ethyl iodoacetamide-d5","synonyms":[{"name":"N-ethyl iodoacetamide-d5","type":"related"},{"name":"NEIAA:2H(5)","type":"related"}],"termid":"MOD:00562"}


id: PBO:0108705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RanGAP Hba1","termid":"PBO:0108705"}


id: GO:0062128
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimer involved in the stabilization of DNA recombination intermediates, the promotion of crossover recombination, and the proper assembly of the synaptonemal complex in meiotic prophase nuclei. In yeast the complex consists of two subunits, Msh4 and Msh5.","definition_xrefs":["PMID:27648641","PMID:7622037","PMID:8001134","PMID:9374523"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatch repair complex","termid":"GO:0032300"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"MutSgamma complex","synonyms":[{"name":"Msh4-Msh5 complex","type":"narrow"}],"termid":"GO:0062128"}


id: GO:1990842
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis in the embryo or fetus during pregnancy.","definition_xrefs":["PMID:22738222"],"gene_count":0,"genotype_count":0,"name":"obsolete response to prenatal stress (obsolete GO:1990842)","synonyms":[{"name":"response to PNS","type":"exact"}],"termid":"GO:1990842"}


id: PBO:0069111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 360, pseudogene","termid":"PBO:0069111"}


id: PBO:0083354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps the verified gene MET2/YNL277W","termid":"PBO:0083354"}


id: PR:Q10135
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- lsd2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine-specific histone demethylase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23E2.02","synonyms":[{"name":"Spom972h-lsd2","type":"exact"}],"termid":"PR:Q10135"}


id: PBO:0059061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MOB kinase activator 2","termid":"PBO:0059061"}


id: PBO:0073709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Skint1 like (pseudogene)","termid":"PBO:0073709"}


id: PBO:0078387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Phe (anticodon GAA) 1-2","termid":"PBO:0078387"}


id: PBO:0052071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"katanin catalytic subunit A1","termid":"PBO:0052071"}


id: GO:0061157
data:
  {"annotated_genes":["SJAG_01053","SJAG_04825","SJAG_04321","SJAG_05694","SJAG_02383","SJAG_02622","SJAG_02213","SJAG_01625","SJAG_03113","SJAG_04880","SJAG_02239","SJAG_01910","SJAG_00343","SJAG_03179","SJAG_01521","SJAG_00285","SJAG_01818","SJAG_00966","SJAG_02540","SJAG_03597","SJAG_04006","SJAG_16457","SJAG_01944","SJAG_04818","SJAG_02370","SJAG_05322","SJAG_04407","SJAG_03876","SJAG_02036","SJAG_03157","SJAG_04350","SJAG_03883","SJAG_00391","SJAG_05010","SJAG_04084","SJAG_02808","SJAG_04153","SJAG_04427","SJAG_04824","SJAG_01191","SJAG_00854","SJAG_00759","SJAG_03745","SJAG_00686"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114215],"is_not":false,"summary":null,"term":"GO:0061157"},{"annotations":[114416],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061158"},{"annotations":[106064,87685,106015,102253,108132,109610],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000290"},{"annotations":[102582,111566,112013,93393,103581,114403,89198,92056,101375,100529,98215,88377],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071042"},{"annotations":[100532,92059,101378,89201,107200,109460,114406,85854,111272,96056,94201,94285],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000288"},{"annotations":[88127,88628,86926,85944,99165,89537,88067,112740,90474,91651,94652,111779,88721,105331,113287],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000289"},{"annotations":[87802],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0036450"},{"annotations":[91770],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990074"}]},"cv_name":"biological_process","definition":"Any process that decreases the stability of an mRNA molecule, making it more vulnerable to degradative processes. Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns.","definition_xrefs":["GOC:jh","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mRNA stability","termid":"GO:0043488"},{"relation_name":"is_a","term_name":"RNA destabilization","termid":"GO:0050779"},{"relation_name":"is_a","term_name":"positive regulation of mRNA catabolic process","termid":"GO:0061014"}],"gene_count":44,"genes_by_uniquename":{"SJAG_00285":null,"SJAG_00343":null,"SJAG_00391":null,"SJAG_00686":null,"SJAG_00759":null,"SJAG_00854":null,"SJAG_00966":null,"SJAG_01053":null,"SJAG_01191":null,"SJAG_01521":null,"SJAG_01625":null,"SJAG_01818":null,"SJAG_01910":null,"SJAG_01944":null,"SJAG_02036":null,"SJAG_02213":null,"SJAG_02239":null,"SJAG_02370":null,"SJAG_02383":null,"SJAG_02540":null,"SJAG_02622":null,"SJAG_02808":null,"SJAG_03113":null,"SJAG_03157":null,"SJAG_03179":null,"SJAG_03597":null,"SJAG_03745":null,"SJAG_03876":null,"SJAG_03883":null,"SJAG_04006":null,"SJAG_04084":null,"SJAG_04153":null,"SJAG_04321":null,"SJAG_04350":null,"SJAG_04407":null,"SJAG_04427":null,"SJAG_04818":null,"SJAG_04824":null,"SJAG_04825":null,"SJAG_04880":null,"SJAG_05010":null,"SJAG_05322":null,"SJAG_05694":null,"SJAG_16457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0016071","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"mRNA destabilization","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0061157","terms_by_termid":{"GO:0000288":null,"GO:0000289":null,"GO:0000290":null,"GO:0036450":null,"GO:0061157":null,"GO:0061158":null,"GO:0071042":null,"GO:1990074":null}}


id: PBO:0086097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and fragmented vacuoles; deletion mutant has increased glycogen accumulation and displays elongated buds; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; ENV11 has a paralog, VID22, that arose from the whole genome duplication","termid":"PBO:0086097"}


id: GO:0018965
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving any s-triazine compound. These compounds include many pesticides of widespread use in agriculture, and are characterized by a symmetrical hexameric ring consisting of alternating carbon and nitrogen atoms.","definition_xrefs":["UM-BBD_pathwayID:tria"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic metabolic process","termid":"GO:0006805"},{"relation_name":"is_a","term_name":"organonitrogen compound metabolic process","termid":"GO:1901564"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"s-triazine compound metabolic process","synonyms":[{"name":"s-triazine compound metabolism","type":"exact"}],"termid":"GO:0018965"}


id: GO:0019803
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The carboxylation of peptidyl-aspartic acid to form peptidyl-L-beta-carboxyaspartic acid.","definition_xrefs":["RESID:AA0304"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-aspartic acid modification","termid":"GO:0018197"},{"relation_name":"is_a","term_name":"protein carboxylation","termid":"GO:0018214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-aspartic acid carboxylation","termid":"GO:0019803"}


id: PBO:0086744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; possibly involved in zinc homeostasis; Bdf1p-dependent transcription induced by salt stress; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus","termid":"PBO:0086744"}


id: PR:000085717
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H3.1, initiator methionine removed form (Schizosaccharomyces pombe) that has been methylated on Lys-36. Example: UniProtKB:P09988, 2-136, Lys-37, MOD:00663.","definition_xrefs":["PMID:37459529","PRO:DAN","PomBase:VW"],"direct_ancestors":[{"relation_name":"has_part","term_name":"methylated lysine","termid":"MOD:00663"},{"relation_name":"is_a","term_name":"histone H3.1, initiator methionine removed form (Schizosaccharomyces pombe)","termid":"PR:000027574"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hht1/Me(K36)","pombase_gene_id":"SPAC1834.04","synonyms":[{"name":"PRO_0000221366, Lys-37, MOD:00663","type":"related"},{"name":"PomBase_original_PRO_term_name: histone H3.1, initiator methionine removed K36-methylated form (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-hht1/InitMet-/K36Me","type":"exact"},{"name":"UniProtKB:P09988, 2-136, Lys-37, MOD:00663","type":"related"},{"name":"hht1/Me(K36)","type":"exact"}],"termid":"PR:000085717"}


id: PBO:0074442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small integral membrane protein 43","termid":"PBO:0074442"}


id: GO:0033267
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A part of an axon, a cell projection of a neuron.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete axon part (obsolete GO:0033267)","termid":"GO:0033267"}


id: FYPO:0005648
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which sister kinetochores separate during the first meiotic nuclear division. Normally sister kinetochores remain together until meiosis II.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic chromosome segregation","termid":"FYPO:0000151"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"sister kinetochore dissociation in meiotic metaphase I","synonyms":[{"name":"decreased meiosis I sister kinetochore fusion","type":"narrow"},{"name":"decreased meiotic sister kinetochore association in meiotic metaphase I","type":"exact"},{"name":"precocious centromeric dissociation during meiosis I","type":"exact"},{"name":"premature sister kinetochore separation during meiosis I","type":"exact"},{"name":"sister kinetochore separation during first meiotic nuclear division","type":"exact"},{"name":"sister kinetochore separation during meiosis I","type":"exact"},{"name":"split kinetochores during meiosis I","type":"related"}],"termid":"FYPO:0005648"}


