# terms

id: FYPO:0007607
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the initiation of nuclear DNA replication begins later than normal when cells are returned to nitrogen-rich medium following nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"delayed onset of mitotic DNA replication initiation","termid":"FYPO:0006031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000293","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000631"],"is_obsolete":false,"name":"delayed onset of mitotic DNA replication initiation during recovery from nitrogen starvation","synonyms":[{"name":"delayed mitotic DNA replication initiation during recovery from nitrogen starvation","type":"exact"},{"name":"delayed onset of mitotic DNA replication initiation during recovery from nitrogen depletion","type":"exact"},{"name":"delayed onset of mitotic DNA replication initiation during recovery from nitrogen deprivation","type":"exact"}],"termid":"FYPO:0007607"}


id: GO:0035906
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the descending aorta over time, from its initial formation to the mature structure. The descending aorta is the portion of the aorta in a two-pass circulatory system from the arch of aorta to the point where it divides into the common iliac arteries. In a two-pass circulatory system blood passes twice through the heart to supply the body once.","definition_xrefs":["MA:0002571","GOC:bf","Wikipedia:Descending_aorta","UBERON:0001514","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"aorta development","termid":"GO:0035904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"descending aorta development","termid":"GO:0035906"}


id: GO:0033620
data:
  {"annotated_genes":["SJAG_00145","SJAG_03747","SJAG_02037","SJAG_04942","SJAG_04601","SJAG_04022","SJAG_04768","SJAG_03939","SJAG_02720","SJAG_01412","SJAG_00448","SJAG_02622","SJAG_00285"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[83659,88950,91291,91648,93683,94278,95223,100427,105343,105944,107421,108882,114211],"is_not":false,"summary":null,"term":"GO:0033620"}]},"cv_name":"cellular_component","definition":"A ribonucleoprotein complex that forms during meiotic prophase in a fixed position in the horsetail nucleus; contains Mei2 and meiRNA. May play a role in the progression of meiosis I.","definition_xrefs":["GOC:vw","PMID:12808043"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"is_a","term_name":"ribonucleoprotein complex","termid":"GO:1990904"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00145":null,"SJAG_00285":null,"SJAG_00448":null,"SJAG_01412":null,"SJAG_02037":null,"SJAG_02622":null,"SJAG_02720":null,"SJAG_03747":null,"SJAG_03939":null,"SJAG_04022":null,"SJAG_04601":null,"SJAG_04768":null,"SJAG_04942":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"Mei2 nuclear dot complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Mei2 dot","type":"exact"},{"name":"Mei2 nuclear dot","type":"broad"},{"name":"nuclear body","type":"related"}],"termid":"GO:0033620","terms_by_termid":{"GO:0033620":null}}


id: PBO:0087644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the glycosylphosphatidylinositol transamidase complex; involved in the addition of GPIs to newly synthesized proteins; luminally-oriented, type I integral membrane glycoprotein of the ER; human PIG-T homolog","termid":"PBO:0087644"}


id: GO:0032726
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of hepatocyte growth factor production.","definition_xrefs":["GOC:mah","PMID:1838014"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of hepatocyte growth factor production","termid":"GO:0032646"},{"relation_name":"is_a","term_name":"positive regulation of protein metabolic process","termid":"GO:0051247"},{"relation_name":"positively_regulates","term_name":"hepatocyte growth factor production","termid":"GO:0032605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of hepatocyte growth factor production","secondary_identifiers":["GO:0048177"],"synonyms":[{"name":"activation of hepatocyte growth factor production","type":"narrow"},{"name":"positive regulation of HGF production","type":"exact"},{"name":"positive regulation of hepatocyte growth factor biosynthetic process","type":"narrow"},{"name":"positive regulation of scatter factor production","type":"exact"},{"name":"stimulation of hepatocyte growth factor production","type":"narrow"},{"name":"up regulation of hepatocyte growth factor production","type":"exact"},{"name":"up-regulation of hepatocyte growth factor production","type":"exact"},{"name":"upregulation of hepatocyte growth factor production","type":"exact"}],"termid":"GO:0032726"}


id: FYPO:0008059
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of a protein to K48-linked polyubiquitin occurs to a lower extent than normal.","definition_xrefs":["PMID:16138082"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein-protein interaction","termid":"FYPO:0001645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000702"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000652","FYPO:0000702"],"is_obsolete":false,"name":"decreased K48-linked polyubiquitin binding","synonyms":[{"name":"decreased K48-linked polyUb binding","type":"exact"}],"termid":"FYPO:0008059"}


id: GO:1902018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cilium assembly.","definition_xrefs":["GOC:dph","GOC:TermGenie","PMID:17719545","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of plasma membrane bounded cell projection assembly","termid":"GO:0120033"},{"relation_name":"is_a","term_name":"regulation of cilium assembly","termid":"GO:1902017"},{"relation_name":"is_a","term_name":"negative regulation of organelle assembly","termid":"GO:1902116"},{"relation_name":"negatively_regulates","term_name":"cilium assembly","termid":"GO:0060271"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"negative regulation of cilium assembly","synonyms":[{"name":"down regulation of ciliogenesis","type":"exact"},{"name":"down regulation of cilium assembly","type":"exact"},{"name":"down regulation of cilium biogenesis","type":"related"},{"name":"down-regulation of ciliogenesis","type":"exact"},{"name":"down-regulation of cilium assembly","type":"exact"},{"name":"down-regulation of cilium biogenesis","type":"related"},{"name":"downregulation of ciliogenesis","type":"exact"},{"name":"downregulation of cilium assembly","type":"exact"},{"name":"downregulation of cilium biogenesis","type":"related"},{"name":"inhibition of ciliogenesis","type":"exact"},{"name":"inhibition of cilium assembly","type":"narrow"},{"name":"inhibition of cilium biogenesis","type":"related"},{"name":"negative regulation of ciliogenesis","type":"exact"},{"name":"negative regulation of cilium biogenesis","type":"related"}],"termid":"GO:1902018"}


id: PBO:0050333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 35","termid":"PBO:0050333"}


id: PBO:0005368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Psy1","termid":"PBO:0005368"}


id: PR:Q10348
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An endonuclease V that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01577"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endonuclease C1F12.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F12.06c","secondary_identifiers":["UniProtKB:Q10348"],"synonyms":[{"name":"Spom972h-ENDOV","type":"exact"}],"termid":"PR:Q10348"}


id: PBO:0040029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo repeat containing X-linked 4","termid":"PBO:0040029"}


id: PBO:0050057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class I, X (pseudogene)","termid":"PBO:0050057"}


id: PR:Q9P7X6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA replication complex GINS protein PSF1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03092","PRO:DNx","PANTHER:PTHR12914:SF2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication complex GINS protein psf1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP23A10.09","secondary_identifiers":["UniProtKB:Q9P7X6"],"synonyms":[{"name":"Spom972h-GINS1","type":"exact"}],"termid":"PR:Q9P7X6"}


id: GO:0042964
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the reduction of thioredoxin, a small disulfide-containing redox protein that serves as a general protein disulfide oxidoreductase.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete thioredoxin reduction (obsolete GO:0042964)","synonyms":[{"name":"thioredoxin anabolism","type":"exact"},{"name":"thioredoxin biosynthesis","type":"exact"},{"name":"thioredoxin formation","type":"exact"},{"name":"thioredoxin synthesis","type":"exact"}],"termid":"GO:0042964"}


id: PBO:0089260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar membrane hydrolase, implicted in protein catabolism or lipid metabolism","termid":"PBO:0089260"}


id: FYPO:0000181
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A DNA recombination phenotype observed in the vegetative growth phase of the life cycle in which reciprocal DNA recombination does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA recombination during vegetative growth","termid":"FYPO:0001345"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000293","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abolished crossover","synonyms":[{"name":"DNA recombination defects, crossover, abolished","type":"exact"},{"name":"abolished crossover during mitotic cell cycle","type":"related"},{"name":"crossover abolished","type":"exact"},{"name":"crossover abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0000181"}


id: PBO:0034099
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_branching_relationship_with","termid":"PBO:0034099"}


id: PBO:0074510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small NF90 (ILF3) associated RNA A2","termid":"PBO:0074510"}


id: GO:0009631
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases freezing tolerance of an organism in response to low, nonfreezing temperatures.","definition_xrefs":["GOC:syr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cold","termid":"GO:0009409"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cold acclimation","termid":"GO:0009631"}


id: _global:has_divisor_quality
data:
  {"annotation_feature_type":"gene","cv_name":"quality","direct_ancestors":[{"relation_name":"is_a","term_name":"has_ratio_quality","termid":"_global:has_ratio_quality"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_divisor_quality","termid":"_global:has_divisor_quality"}


id: GO:0120509
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-glycerate + NADP+ = 3-hydroxypyruvate + NADPH + H+.","definition_xrefs":["RHEA:18657"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydroxypyruvate reductase [NAD(P)H] activity","termid":"GO:0016618"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"hydroxypyruvate reductase (NADPH) activity","secondary_identifiers":["MetaCyc:RXN0-300"],"termid":"GO:0120509"}


id: PBO:0018169
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"latrunculin sensitive gamma subunit","termid":"PBO:0018169"}


id: PBO:0079291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin tyrosine ligase like 9","termid":"PBO:0079291"}


id: PR:Q10358
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein RER1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10743:SF0","PRO:DNx","OMA:SCHPO02094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein rer1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22E12.05c","secondary_identifiers":["UniProtKB:Q10358"],"synonyms":[{"name":"Spom972h-RER1","type":"exact"},{"name":"retention of ER proteins 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10358"}


id: GO:1902657
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a prospore membrane.","definition_xrefs":["GOC:dph","PMID:24036347","GO_REF:0000087","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to membrane","termid":"GO:0072657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to prospore membrane","secondary_identifiers":["GO:0072693","GO:1902658"],"synonyms":[{"name":"establishment of protein localisation in prospore membrane","type":"related"},{"name":"establishment of protein localisation to prospore membrane","type":"related"},{"name":"establishment of protein localization in prospore membrane","type":"related"},{"name":"establishment of protein localization to prospore membrane","type":"related"},{"name":"protein localisation in prospore membrane","type":"exact"},{"name":"protein localisation to prospore membrane","type":"exact"},{"name":"protein localization in prospore membrane","type":"exact"},{"name":"protein targeting to FSM","type":"related"},{"name":"protein targeting to ascospore-type prospore membrane","type":"related"},{"name":"protein targeting to forespore membrane","type":"related"},{"name":"protein targeting to prospore membrane","type":"related"},{"name":"protein-prospore membrane targeting","type":"related"}],"termid":"GO:1902657"}


id: PBO:0090476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar calcium transmembrane transporter","termid":"PBO:0090476"}


id: PBO:0029098
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_cell_population_growth_on_sulfate_sulfur_source","termid":"PBO:0029098"}


id: _global:is_magnitude_of
data:
  {"annotation_feature_type":"gene","cv_name":"pato.ontology","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_magnitude_of","termid":"_global:is_magnitude_of"}


id: PBO:0067567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 720, pseudogene","termid":"PBO:0067567"}


id: PBO:0055398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2828","termid":"PBO:0055398"}


id: PBO:0044999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DIAPH3 antisense RNA 2","termid":"PBO:0044999"}


id: GO:1905459
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of vascular associated smooth muscle cell apoptotic process.","definition_xrefs":["GO_REF:0000058","GOC:BHF_miRNA","GOC:rph","GOC:TermGenie","GOC:BHF","PMID:26493107"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of smooth muscle cell apoptotic process","termid":"GO:0034391"},{"relation_name":"regulates","term_name":"vascular associated smooth muscle cell apoptotic process","termid":"GO:1905288"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of vascular associated smooth muscle cell apoptotic process","synonyms":[{"name":"regulation of VSMC apoptosis","type":"narrow"},{"name":"regulation of VSMC apoptotic process","type":"exact"},{"name":"regulation of vascular associated smooth muscle cell apoptosis","type":"narrow"},{"name":"regulation of vascular smooth muscle cell apoptosis","type":"narrow"},{"name":"regulation of vascular smooth muscle cell apoptotic process","type":"exact"}],"termid":"GO:1905459"}


id: PBO:0038722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin gamma 1 pseudogene 17","termid":"PBO:0038722"}


id: PATO:0001501
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development.","definition_xrefs":["Merriam-Webster:Merriam-Webster"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maturity","termid":"PATO:0000261"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immature","synonyms":[{"name":"underdeveloped","type":"related"}],"termid":"PATO:0001501"}


id: PBO:0071509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L34 pseudogene 12","termid":"PBO:0071509"}


id: GO:1902312
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of copper ion transmembrane transport.","definition_xrefs":["PMID:21489137","GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of copper ion transmembrane transport","termid":"GO:1902311"},{"relation_name":"is_a","term_name":"negative regulation of cation transmembrane transport","termid":"GO:1904063"},{"relation_name":"negatively_regulates","term_name":"copper ion transmembrane transport","termid":"GO:0035434"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"negative regulation of copper ion transmembrane transport","synonyms":[{"name":"down regulation of copper cation transmembrane transport","type":"exact"},{"name":"down regulation of copper ion membrane transport","type":"exact"},{"name":"down regulation of copper ion transmembrane transport","type":"exact"},{"name":"down-regulation of copper cation transmembrane transport","type":"exact"},{"name":"down-regulation of copper ion membrane transport","type":"exact"},{"name":"down-regulation of copper ion transmembrane transport","type":"exact"},{"name":"downregulation of copper cation transmembrane transport","type":"exact"},{"name":"downregulation of copper ion membrane transport","type":"exact"},{"name":"downregulation of copper ion transmembrane transport","type":"exact"},{"name":"inhibition of copper cation transmembrane transport","type":"narrow"},{"name":"inhibition of copper ion membrane transport","type":"narrow"},{"name":"inhibition of copper ion transmembrane transport","type":"narrow"},{"name":"negative regulation of copper cation transmembrane transport","type":"exact"},{"name":"negative regulation of copper ion membrane transport","type":"exact"}],"termid":"GO:1902312"}


id: PBO:0075646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPRY4 antisense RNA 1","termid":"PBO:0075646"}


id: PBO:0083620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E2-like enzyme; involved in autophagy and cytoplasm-to-vacuole targeting (Cvt) pathway; plays a role in formation of Atg8p-phosphatidylethanolamine conjugates, which are involved in membrane dynamics during autophagy and Cvt; interaction with Atg8p regulated by acetylation by NuA4 histone acetyltransferase Esa1p while attenuation of Atg3 acetylation is mediated by histone deacetylase Rpd3p; Atg12p-Atg5p conjugate enhances E2 activity of Atg3p by rearranging its catalytic site","termid":"PBO:0083620"}


id: GO:1904833
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of removal of superoxide radicals.","definition_xrefs":["GOC:TermGenie","GOC:BHF","GOC:BHF_miRNA","GOC:rph","PMID:22836756","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of removal of superoxide radicals","termid":"GO:2000121"},{"relation_name":"is_a","term_name":"positive regulation of reactive oxygen species metabolic process","termid":"GO:2000379"},{"relation_name":"positively_regulates","term_name":"removal of superoxide radicals","termid":"GO:0019430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0098754"},{"rel_name":"positively_regulates","termid":"GO:0098754"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0098754","GO:0008150"],"is_obsolete":false,"name":"positive regulation of removal of superoxide radicals","synonyms":[{"name":"activation of cellular detoxification of superoxide radicals","type":"narrow"},{"name":"activation of removal of O2-","type":"narrow"},{"name":"activation of removal of oxygen free radicals","type":"narrow"},{"name":"activation of removal of superoxide radicals","type":"narrow"},{"name":"positive regulation of cellular detoxification of superoxide radicals","type":"exact"},{"name":"positive regulation of removal of O2-","type":"exact"},{"name":"positive regulation of removal of oxygen free radicals","type":"exact"},{"name":"up regulation of cellular detoxification of superoxide radicals","type":"exact"},{"name":"up regulation of removal of O2-","type":"exact"},{"name":"up regulation of removal of oxygen free radicals","type":"exact"},{"name":"up regulation of removal of superoxide radicals","type":"exact"},{"name":"up-regulation of cellular detoxification of superoxide radicals","type":"exact"},{"name":"up-regulation of removal of O2-","type":"exact"},{"name":"up-regulation of removal of oxygen free radicals","type":"exact"},{"name":"up-regulation of removal of superoxide radicals","type":"exact"},{"name":"upregulation of cellular detoxification of superoxide radicals","type":"exact"},{"name":"upregulation of removal of O2-","type":"exact"},{"name":"upregulation of removal of oxygen free radicals","type":"exact"},{"name":"upregulation of removal of superoxide radicals","type":"exact"}],"termid":"GO:1904833"}


id: GO:1901622
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of smoothened signaling pathway involved in dorsal/ventral neural tube patterning.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of smoothened signaling pathway","termid":"GO:0045880"},{"relation_name":"is_a","term_name":"regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","termid":"GO:1901620"},{"relation_name":"positively_regulates","term_name":"smoothened signaling pathway involved in dorsal/ventral neural tube patterning","termid":"GO:0060831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","synonyms":[{"name":"activation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning","type":"narrow"},{"name":"activation of hh signaling pathway involved in dorsal/ventral neural tube patterning","type":"narrow"},{"name":"activation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","type":"narrow"},{"name":"activation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning","type":"narrow"},{"name":"positive regulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"positive regulation of hh signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"positive regulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"up regulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"up regulation of hh signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"up regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"up regulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"up-regulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"up-regulation of hh signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"up-regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"up-regulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"upregulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"upregulation of hh signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"upregulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"upregulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning","type":"exact"}],"termid":"GO:1901622"}


id: GO:0008439
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Increases the activity of the enzyme monophenol monooxygenase.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete monophenol monooxygenase activator activity (obsolete GO:0008439)","synonyms":[{"name":"monophenol monooxygenase activator activity","type":"exact"},{"name":"prophenol oxidase activator","type":"related"}],"termid":"GO:0008439"}


id: FYPO:0003750
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which a cell contains a normal number of nuclear pore complexes.","definition_xrefs":["PMID:9372936","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal nuclear pore density","synonyms":[{"name":"normal NPC density","type":"exact"},{"name":"normal nuclear pore complex density","type":"exact"},{"name":"normal nuclear pore density during mitotic cell cycle","type":"exact"},{"name":"normal nuclear pore density during vegetative growth","type":"exact"},{"name":"nuclear pore complexes present in normal number","type":"exact"},{"name":"nuclear pores present in normal number","type":"exact"}],"termid":"FYPO:0003750"}


id: PBO:0081853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 786","termid":"PBO:0081853"}


id: PBO:0072166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15 pseudogene 3","termid":"PBO:0072166"}


id: FYPO:0001951
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the export of calcium ions out of a cell is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transport during vegetative growth","termid":"FYPO:0005973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormal calcium export","synonyms":[{"name":"abnormal calcium efflux from cell","type":"exact"},{"name":"abnormal calcium export during mitotic cell cycle","type":"related"},{"name":"abnormal calcium export during vegetative growth","type":"exact"},{"name":"abnormal calcium export from cell","type":"narrow"},{"name":"abnormal calcium ion export","type":"exact"},{"name":"abnormal calcium ion export from cell","type":"exact"},{"name":"abnormal cellular calcium export","type":"exact"}],"termid":"FYPO:0001951"}


id: GO:0043094
data:
  {"annotated_genes":["SJAG_02293","SJAG_00707","SJAG_03614","SJAG_03298","SJAG_04354","SJAG_00252","SJAG_04709","SJAG_00134","SJAG_03881","SJAG_04067","SJAG_04953","SJAG_00419","SJAG_01070","SJAG_01970","SJAG_03362","SJAG_02689","SJAG_00533","SJAG_01781","SJAG_04264","SJAG_00957","SJAG_02179","SJAG_04713","SJAG_04123","SJAG_04467","SJAG_03708","SJAG_05029","SJAG_06634","SJAG_04712","SJAG_01383","SJAG_00309","SJAG_03096","SJAG_01859","SJAG_01404"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89668],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006168"},{"annotations":[112971],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006169"},{"annotations":[112972,89669],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044209"},{"annotations":[89091,111041],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044211"},{"annotations":[89889],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032263"},{"annotations":[89891,97947],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032264"},{"annotations":[104628],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006190"},{"annotations":[96134,91709],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990355"},{"annotations":[95147,96787,108562,103131,85932,88782],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019509"},{"annotations":[88783,95148,103132],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019284"},{"annotations":[85182],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034355"},{"annotations":[86799,85183,105752],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019358"},{"annotations":[94724,94723],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043174"},{"annotations":[84627],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1903931"},{"annotations":[89892,85933,111966,89670],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006166"},{"annotations":[111818,95820],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009443"},{"annotations":[107958],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010144"},{"annotations":[93882,109954],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043097"},{"annotations":[86802,84622],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008655"},{"annotations":[95657,106578,106579],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036172"},{"annotations":[84623,89092,88103,83636,111043],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044206"},{"annotations":[88104],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006223"},{"annotations":[89893],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032265"}]},"cv_name":"biological_process","definition":"Any process which produces a useful metabolic compound from derivatives of it without de novo synthesis, as carried out by individual cells.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular metabolic process","termid":"GO:0044237"}],"gene_count":33,"genes_by_uniquename":{"SJAG_00134":null,"SJAG_00252":null,"SJAG_00309":null,"SJAG_00419":null,"SJAG_00533":null,"SJAG_00707":null,"SJAG_00957":null,"SJAG_01070":null,"SJAG_01383":null,"SJAG_01404":null,"SJAG_01781":null,"SJAG_01859":null,"SJAG_01970":null,"SJAG_02179":null,"SJAG_02293":null,"SJAG_02689":null,"SJAG_03096":null,"SJAG_03298":null,"SJAG_03362":null,"SJAG_03614":null,"SJAG_03708":null,"SJAG_03881":null,"SJAG_04067":null,"SJAG_04123":null,"SJAG_04264":null,"SJAG_04354":null,"SJAG_04467":null,"SJAG_04709":null,"SJAG_04712":null,"SJAG_04713":null,"SJAG_04953":null,"SJAG_05029":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular metabolic compound salvage","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0043094","terms_by_termid":{"GO:0006166":null,"GO:0006168":null,"GO:0006169":null,"GO:0006190":null,"GO:0006223":null,"GO:0008655":null,"GO:0009443":null,"GO:0010144":null,"GO:0019284":null,"GO:0019358":null,"GO:0019509":null,"GO:0032263":null,"GO:0032264":null,"GO:0032265":null,"GO:0034355":null,"GO:0036172":null,"GO:0043097":null,"GO:0043174":null,"GO:0044206":null,"GO:0044209":null,"GO:0044211":null,"GO:1903931":null,"GO:1990355":null}}


id: GO:0120034
data:
  {"annotated_genes":["SJAG_04509","SJAG_00514","SJAG_02379","SJAG_01794","SJAG_03453"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107492,84067,89610,86024,86989],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902917"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of plasma membrane bounded cell projection assembly.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell projection organization","termid":"GO:0031346"},{"relation_name":"is_a","term_name":"positive regulation of cellular component biogenesis","termid":"GO:0044089"},{"relation_name":"is_a","term_name":"regulation of plasma membrane bounded cell projection assembly","termid":"GO:0120032"},{"relation_name":"positively_regulates","term_name":"plasma membrane bounded cell projection assembly","termid":"GO:0120031"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00514":null,"SJAG_01794":null,"SJAG_02379":null,"SJAG_03453":null,"SJAG_04509":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of plasma membrane bounded cell projection assembly","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0120034","terms_by_termid":{"GO:1902917":null}}


id: PBO:0085368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphoserine phosphatase of the phosphoglycerate pathway; involved in serine and glycine biosynthesis, expression is regulated by the available nitrogen source","termid":"PBO:0085368"}


id: GO:2000697
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of epithelial cell differentiation involved in kidney development.","definition_xrefs":["GOC:yaf","GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of epithelial cell differentiation","termid":"GO:0030857"},{"relation_name":"is_a","term_name":"regulation of epithelial cell differentiation involved in kidney development","termid":"GO:2000696"},{"relation_name":"negatively_regulates","term_name":"epithelial cell differentiation involved in kidney development","termid":"GO:0035850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of epithelial cell differentiation involved in kidney development","termid":"GO:2000697"}


id: PBO:0054481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1881","termid":"PBO:0054481"}


id: GO:0055057
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process resulting in the physical partitioning and separation of a neuroblast into daughter cells. A neuroblast is any cell that will divide and give rise to a neuron.","definition_xrefs":["PMID:11163136","PMID:11250167"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell division","termid":"GO:0051301"},{"relation_name":"part_of","term_name":"neuroblast proliferation","termid":"GO:0007405"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuroblast division","synonyms":[{"name":"neuroblast cell division","type":"exact"}],"termid":"GO:0055057"}


id: PBO:0083892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FG-nucleoporin component of central core of the nuclear pore complex; also part of the nuclear pore complex (NPC) nuclear basket; contributes directly to nucleocytoplasmic transport and maintenance of the NPC permeability barrier; found in stable complex with Nup82p, Gle2p and two other FG-nucleoporins (Nup159p and Nup116p); also found in stable complex with Nic96p and two other FG-nucleoproteins (Nup49p and Nup57p)","termid":"PBO:0083892"}


id: GO:1990124
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ribonucleoprotein complex containing both protein and messenger RNA (mRNA) molecules.","definition_xrefs":["GOC:bf","PMID:15574591","PMID:21915786"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoprotein complex","termid":"GO:1990904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"messenger ribonucleoprotein complex","synonyms":[{"name":"mRNA-protein complex","type":"exact"},{"name":"mRNP","type":"exact"},{"name":"mRNP complex","type":"exact"},{"name":"messenger ribonucleoprotein particle","type":"related"}],"termid":"GO:1990124"}


id: GO:0060456
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of a digestive system process, a physical, chemical, or biochemical process carried out by living organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of digestive system process","termid":"GO:0044058"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"positively_regulates","term_name":"digestive system process","termid":"GO:0022600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of digestive system process","termid":"GO:0060456"}


id: GO:0141175
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A protein-protein adaptor that acts as a platform for receptor clustering, often serving to amplify the sensitivity of a signaling response.","definition_xrefs":["PMID:21453460","PMID:19747931","PMID:33597156"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-macromolecule adaptor activity","termid":"GO:0030674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030674"}],"interesting_parent_ids":["GO:0060090","GO:0030674","GO:0003674"],"is_obsolete":false,"name":"receptor clustering activity","termid":"GO:0141175"}


id: PBO:0049197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Grid2 interacting protein","termid":"PBO:0049197"}


id: PBO:0086193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein similar to the human peptidyl-tRNA hydrolase gene ICT1; associates with mitochondrial large subunit; may function in translation termination; YOL114C is not an essential gene","termid":"PBO:0086193"}


id: FYPO:0003075
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0000257"],"is_obsolete":false,"name":"normal protein kinase activity","termid":"FYPO:0003075"}


id: GO:0000760
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"In organisms that undergo conjugation without cellular fusion, the process resulting in desensitization following exposure to pheromone stimulus that act to down-regulate further stimulation or block initial conjugation responses.","definition_xrefs":["GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to pheromone regulating conjugation with mutual genetic exchange","termid":"GO:0000756"},{"relation_name":"is_a","term_name":"negative adaptation of signaling pathway","termid":"GO:0022401"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"adaptation to pheromone regulating conjugation with mutual genetic exchange","synonyms":[{"name":"adaptation to pheromone involved conjugation without cellular fusion","type":"related"},{"name":"desensitization to pheromone during conjugation without cellular fusion","type":"exact"}],"termid":"GO:0000760"}


id: PBO:0052834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 1-4","termid":"PBO:0052834"}


id: GO:0060882
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that results in the breakdown of the basement membrane that contributes to the process of semicircular canal fusion.","definition_xrefs":["GOC:sdb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"basement membrane disassembly","termid":"GO:0034769"},{"relation_name":"part_of","term_name":"semicircular canal fusion","termid":"GO:0060879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"basement membrane disassembly involved in semicircular canal fusion","synonyms":[{"name":"basal lamina disassembly involved in semicircular canal fusion","type":"related"}],"termid":"GO:0060882"}


id: GO:0042264
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The hydroxylation of peptidyl-aspartic acid to form peptidyl-hydroxyaspartic acid.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein hydroxylation","termid":"GO:0018126"},{"relation_name":"is_a","term_name":"peptidyl-aspartic acid modification","termid":"GO:0018197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-aspartic acid hydroxylation","synonyms":[{"name":"peptidyl-aspartic acid/asparagine hydroxylation","type":"broad"}],"termid":"GO:0042264"}


id: GO:0047588
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-aminopentanamide + H2O = 5-aminopentanoate + NH3.","definition_xrefs":["MetaCyc:5-AMINOPENTANAMIDASE-RXN","EC:3.5.1.30"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0016810","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"5-aminopentanamidase activity","secondary_identifiers":["RHEA:15677"],"synonyms":[{"name":"5-aminonorvaleramidase activity","type":"related"},{"name":"5-aminopentanamide amidohydrolase activity","type":"related"},{"name":"5-aminovaleramidase activity","type":"related"}],"termid":"GO:0047588"}


id: GO:0018392
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N(4)-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl}-L-asparagine + GDP-L-fucose = N(4)-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-[alpha-L-fucosyl-(1->3)]-N-acetyl-beta-D-glucosaminyl}-L-asparagine + GDP + H+.","definition_xrefs":["RHEA:24444","EC:2.4.1.214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-(1->3)-fucosyltransferase activity","termid":"GO:0046920"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a glycoprotein","termid":"GO:0140103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0140096","GO:0003674","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"glycoprotein 3-alpha-L-fucosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.214-RXN","KEGG_REACTION:R06015"],"synonyms":[{"name":"GDP-L-Fuc:Asn-linked GlcNAc alpha-1,3-fucosyltransferase activity","type":"related"},{"name":"GDP-L-Fuc:Asn-linked GlcNAc alpha1,3-fucosyltransferase activity","type":"related"},{"name":"GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha-1,3-fucosyltransferase activity","type":"related"},{"name":"GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha1,3-fucosyltransferase activity","type":"related"},{"name":"GDP-L-fucose:asparagine-linked N-acetylglucosamine alpha(1,3)-fucosyltransferase activity","type":"exact"},{"name":"GDP-L-fucose:glycoprotein (L-fucose to asparagine-linked N-acetylglucosamine of 4-N-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl}asparagine) 3-alpha-L-fucosyl-transferase activity","type":"related"},{"name":"GDP-L-fucose:glycoprotein (L-fucose to asparagine-linked N-acetylglucosamine of N4-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl}asparagine) 3-alpha-L-fucosyl-transferase activity","type":"related"},{"name":"GDP-fucose:beta-N-acetylglucosamine (Fuc to (Fuc-alpha-1->6-GlcNAc)-Asn-peptide) alpha-1->3-fucosyltransferase activity","type":"related"},{"name":"GDP-fucose:beta-N-acetylglucosamine (Fuc to (Fucalpha1->6-GlcNAc)-Asn-peptide) alpha1->3-fucosyltransferase activity","type":"related"},{"name":"GDP-fucose:beta-N-acetylglucosamine (Fuc to (Fucalpha1->6GlcNAc)-Asn-peptide) alpha1->3-fucosyltransferase activity","type":"related"}],"termid":"GO:0018392"}


id: PBO:0061960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily A member 20 pseudogene","termid":"PBO:0061960"}


id: GO:0000260
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out). Found in vacuoles of eukaryotes and in bacteria.","definition_xrefs":["TC:3.A.2.2.3","TC:3.A.2.2.1"],"gene_count":0,"genotype_count":0,"name":"obsolete hydrogen-translocating V-type ATPase activity (obsolete GO:0000260)","synonyms":[{"name":"hydrogen-translocating V-type ATPase activity","type":"exact"}],"termid":"GO:0000260"}


id: PBO:0081889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 839 pseudogene 1","termid":"PBO:0081889"}


id: PBO:0053608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 641","termid":"PBO:0053608"}


id: GO:0071426
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a ribonucleoprotein complex from the nucleus to the cytoplasm.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete ribonucleoprotein complex export from nucleus (obsolete GO:0071426)","synonyms":[{"name":"RNP export from nucleus","type":"exact"},{"name":"ribonucleoprotein complex export from cell nucleus","type":"exact"},{"name":"ribonucleoprotein complex nucleus export","type":"exact"},{"name":"ribonucleoprotein complex transport from nucleus to cytoplasm","type":"exact"}],"termid":"GO:0071426"}


id: GO:0004419
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-3-hydroxy-3-methylglutaryl-CoA = acetoacetate + acetyl-CoA.","definition_xrefs":["EC:4.1.3.4","RHEA:24404"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxo-acid-lyase activity","termid":"GO:0016833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"hydroxymethylglutaryl-CoA lyase activity","secondary_identifiers":["MetaCyc:HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN","Reactome:R-HSA-6788597","Reactome:R-HSA-74180","KEGG_REACTION:R01360"],"synonyms":[{"name":"(S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase (acetyl-CoA-forming)","type":"related"},{"name":"(S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase activity","type":"related"},{"name":"3-hydroxy-3-methylglutarate-CoA lyase activity","type":"related"},{"name":"3-hydroxy-3-methylglutaryl CoA cleaving enzyme","type":"related"},{"name":"3-hydroxy-3-methylglutaryl coenzyme A lyase activity","type":"related"},{"name":"3-hydroxy-3-methylglutaryl-CoA lyase activity","type":"related"},{"name":"HMG-CoA lyase activity","type":"related"},{"name":"hydroxymethylglutaryl coenzyme A lyase activity","type":"related"},{"name":"hydroxymethylglutaryl coenzyme A-cleaving enzyme","type":"related"}],"termid":"GO:0004419"}


id: GO:2000049
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell-cell adhesion mediated by cadherin.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell-cell adhesion","termid":"GO:0022409"},{"relation_name":"is_a","term_name":"regulation of cell-cell adhesion mediated by cadherin","termid":"GO:2000047"},{"relation_name":"positively_regulates","term_name":"cell-cell adhesion mediated by cadherin","termid":"GO:0044331"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"positive regulation of cell-cell adhesion mediated by cadherin","termid":"GO:2000049"}


id: PBO:0063002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAF1 homolog, Paf1/RNA polymerase II complex component","termid":"PBO:0063002"}


id: FYPO:0003340
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of re-entry into the mitotic cell cycle is decreased when the cell is in a population that has been in stationary phase and is then placed in conditions that allow recovery.","definition_xrefs":["PomBase:mah","PMID:9199286"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation phenotype","termid":"FYPO:0000145"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"decreased re-entry into mitotic cell cycle during recovery from stationary phase","synonyms":[{"name":"decreased re-entry into mitotic cell cycle following growth to stationary phase","type":"exact"},{"name":"reduced re-entry into mitotic cell cycle during recovery from stationary phase","type":"exact"}],"termid":"FYPO:0003340"}


id: GO:2000848
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of corticosteroid hormone secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of steroid hormone secretion","termid":"GO:2000833"},{"relation_name":"is_a","term_name":"regulation of corticosteroid hormone secretion","termid":"GO:2000846"},{"relation_name":"positively_regulates","term_name":"corticosteroid hormone secretion","termid":"GO:0035930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of corticosteroid hormone secretion","synonyms":[{"name":"positive regulation of corticosteroid secretion","type":"related"}],"termid":"GO:2000848"}


id: PBO:0085984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; required for efficient 5' processing of mitochondrial tRNAs, for respiratory growth and mitochondrial genome maintenance; null mutant has decreased levels of cardiolipin and phosphatidylethanolamine; localizes to the matrix side of the inner mitochondrial membrane","termid":"PBO:0085984"}


id: GO:0097043
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 56 of the histone.","definition_xrefs":["GOC:bf","GOC:pr"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K56 acetylation (obsolete GO:0097043)","termid":"GO:0097043"}


id: GO:0001570
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes.","definition_xrefs":["PMID:8999798"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"blood vessel morphogenesis","termid":"GO:0048514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vasculogenesis","secondary_identifiers":["Wikipedia:Vasculogenesis"],"synonyms":[{"name":"vascular morphogenesis","type":"exact"}],"termid":"GO:0001570"}


id: GO:2000393
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of lamellipodium morphogenesis.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"negative regulation of lamellipodium organization","termid":"GO:1902744"},{"relation_name":"is_a","term_name":"regulation of lamellipodium morphogenesis","termid":"GO:2000392"},{"relation_name":"negatively_regulates","term_name":"lamellipodium morphogenesis","termid":"GO:0072673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of lamellipodium morphogenesis","synonyms":[{"name":"negative regulation of lamellipodium organization","type":"related"}],"termid":"GO:2000393"}


id: GO:0047346
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: aldose 1-phosphate + ADP = phosphate + ADP-aldose.","definition_xrefs":["MetaCyc:2.7.7.36-RXN","EC:2.7.7.36"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylyltransferase activity","termid":"GO:0070566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016779","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"aldose-1-phosphate adenylyltransferase activity","synonyms":[{"name":"ADP sugar phosphorylase activity","type":"related"},{"name":"ADP-aldose phosphorylase activity","type":"related"},{"name":"ADP-sugar phosphorylase activity","type":"broad"},{"name":"ADP:aldose-1-phosphate adenylyltransferase activity","type":"exact"},{"name":"ADP:alpha-D-aldose-1-phosphate adenylyltransferase activity","type":"related"},{"name":"ADPaldose phosphorylase activity","type":"related"},{"name":"adenosine diphosphate glucose:orthophosphate adenylyltransferase activity","type":"related"},{"name":"adenosine diphosphosugar phosphorylase activity","type":"related"},{"name":"sugar-1-phosphate adenylyltransferase activity","type":"broad"}],"termid":"GO:0047346"}


id: PBO:0003759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA Z15","termid":"PBO:0003759"}


id: GO:0000324
data:
  {"annotated_genes":["SJAG_01507","SJAG_04785","SJAG_04955","SJAG_04471","SJAG_04167","SJAG_02414","SJAG_05342","SJAG_01978","SJAG_00181","SJAG_00771","SJAG_01983","SJAG_01991","SJAG_01941","SJAG_04966","SJAG_01783","SJAG_05194","SJAG_01990","SJAG_03951","SJAG_00877","SJAG_03928","SJAG_01612","SJAG_00824","SJAG_02356","SJAG_02578","SJAG_01619","SJAG_02076","SJAG_02656","SJAG_00212","SJAG_02962","SJAG_01219","SJAG_02665","SJAG_02694","SJAG_04023","SJAG_01299","SJAG_03022","SJAG_00638","SJAG_02565","SJAG_03652","SJAG_04698","SJAG_03511","SJAG_01493","SJAG_01913","SJAG_02117","SJAG_01344","SJAG_01803","SJAG_07012","SJAG_03508","SJAG_05184","SJAG_00132","SJAG_03250","SJAG_01324","SJAG_03400","SJAG_03667","SJAG_01088","SJAG_01795","SJAG_04643","SJAG_03909","SJAG_03316","SJAG_00516","SJAG_01033","SJAG_04790","SJAG_00018","SJAG_03656","SJAG_00457","SJAG_03976","SJAG_05210","SJAG_02853","SJAG_03848","SJAG_01078","SJAG_03447","SJAG_02100","SJAG_03072","SJAG_03725","SJAG_02060","SJAG_01072","SJAG_03089","SJAG_00299","SJAG_01236","SJAG_02603","SJAG_01509","SJAG_01027","SJAG_03606","SJAG_01817","SJAG_02699","SJAG_05213","SJAG_00589","SJAG_02196","SJAG_00051","SJAG_01036","SJAG_02029","SJAG_03960","SJAG_02957","SJAG_03987","SJAG_01505","SJAG_03406","SJAG_04867","SJAG_01183","SJAG_04506","SJAG_03256","SJAG_02432","SJAG_03100","SJAG_00570","SJAG_02433","SJAG_01095","SJAG_02716","SJAG_02782","SJAG_02344","SJAG_00534","SJAG_04725","SJAG_00402","SJAG_05245","SJAG_04232","SJAG_02440","SJAG_01112","SJAG_03442","SJAG_02289","SJAG_02943","SJAG_01407","SJAG_03405","SJAG_02103","SJAG_00029","SJAG_00209","SJAG_02902","SJAG_01319","SJAG_05294","SJAG_04426","SJAG_01868","SJAG_02023","SJAG_03586","SJAG_03313","SJAG_01571","SJAG_04717","SJAG_02132","SJAG_00620","SJAG_03403","SJAG_01471","SJAG_04819","SJAG_03450","SJAG_01032","SJAG_03009","SJAG_04637","SJAG_00732","SJAG_02581","SJAG_03899","SJAG_01400","SJAG_00587","SJAG_03371","SJAG_04502","SJAG_04616","SJAG_02114","SJAG_01080","SJAG_03895","SJAG_04312","SJAG_02495","SJAG_03363","SJAG_00821","SJAG_03497","SJAG_03137","SJAG_00688","SJAG_04963","SJAG_02330","SJAG_04714","SJAG_03608","SJAG_01320","SJAG_01145","SJAG_00115","SJAG_04975","SJAG_02315","SJAG_04015","SJAG_03138"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[83645,84111,84307,84604,84613,86286,86287,86635,86636,86637,86638,86639,86640,86641,86642,86643,87951,90175,90604,90954,91219,92210,92631,93104,93193,93743,93772,94510,94671,94676,95333,97642,97976,98935,99066,99141,99439,99572,99902,100130,100518,100754,103664,103753,104403,104942,105465,105565,105582,105928,106150,107089,108474,108856,108992,109777,110297,110864,112958,113656,114058,114302],"is_not":false,"summary":null,"term":"GO:0000324"},{"annotations":[101868,111977,83646,109439,110573,93773,93985,90605,90052,97798,110301],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000328"},{"annotations":[94496,106117,106390,93762,94188,98936,103523,109371,111001,113657,94737,110462,89017,89901,96106,110639,113921,94833,86310,101013,84206,105504,104404,97574,109778,114303,113373,86369,103416,112681,113718,106385,114466,89900,94995,105416,96068,86544,90026,99573,84188,90166,92552,85467,89843,98104,103317,107916,113024,92036,114826,101084,91796,90451,94955,88184,96412,85306,99723,100045,106477,85261,92835,105388,90192,88247,101827,91907,109548,92751,109689,90762,104807,85293,101243,113147,110469,96359,89098,94692,87632,93194,105554,108699,85227,111682,112330,112755,96144,102797,96382,83902,89661,99969,106151,92123,92167,93504,99933,106520,85248,90731,97760,102803,113499,92276,85999,105999,90730,103975],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000329"}]},"cv_name":"cellular_component","definition":"A vacuole that has both lytic and storage functions. The fungal vacuole is a large, membrane-bounded organelle that functions as a reservoir for the storage of small molecules (including polyphosphate, amino acids, several divalent cations (e.g. calcium), other ions, and other small molecules) as well as being the primary compartment for degradation. It is an acidic compartment, containing an ensemble of acid hydrolases. 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id: PBO:0061196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NNT antisense RNA 1","termid":"PBO:0061196"}


id: GO:0015121
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: phosphoenolpyruvate(out) + phosphate(in) = phosphoenolpyruvate(in) + phosphate(out).","definition_xrefs":["GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organophosphate:phosphate antiporter activity","termid":"GO:0015315"},{"relation_name":"is_a","term_name":"secondary active monocarboxylate transmembrane transporter activity","termid":"GO:0015355"},{"relation_name":"is_a","term_name":"phosphoenolpyruvate transmembrane transporter activity","termid":"GO:0089721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"phosphoenolpyruvate:phosphate antiporter activity","synonyms":[{"name":"PPT","type":"broad"},{"name":"phosphoenolpyruvate/phosphate translocator","type":"exact"}],"termid":"GO:0015121"}


id: GO:0005542
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin binding","termid":"GO:0019842"},{"relation_name":"is_a","term_name":"carboxylic acid binding","termid":"GO:0031406"},{"relation_name":"is_a","term_name":"amide binding","termid":"GO:0033218"},{"relation_name":"is_a","term_name":"modified amino acid binding","termid":"GO:0072341"},{"relation_name":"is_a","term_name":"organic cyclic compound binding","termid":"GO:0097159"},{"relation_name":"is_a","term_name":"heterocyclic compound binding","termid":"GO:1901363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"folic acid binding","synonyms":[{"name":"folate binding","type":"exact"},{"name":"vitamin B9 binding","type":"exact"},{"name":"vitamin M binding","type":"exact"}],"termid":"GO:0005542"}


id: GO:0010788
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of COPI proteins and adaptor proteins to Golgi membranes during the formation of cis-Golgi to rough ER transport vesicles, forming a vesicle coat.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"COPI coating of Golgi vesicle","termid":"GO:0048205"},{"relation_name":"part_of","term_name":"vesicle targeting, cis-Golgi to rough endoplasmic reticulum","termid":"GO:0048206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016192","GO:0061024","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"COPI coating of Golgi vesicle, cis-Golgi to rough ER","termid":"GO:0010788"}


id: PBO:0027181
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_heterochromatin_maintenance_involved_in_chromatin_silencing_at_centromere_outer_repeat","termid":"PBO:0027181"}


id: GO:0033370
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is maintained in a secretory granule in a mast cell and prevented from moving elsewhere.","definition_xrefs":["GOC:tb","GOC:dph","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of protein location in cell","termid":"GO:0032507"},{"relation_name":"part_of","term_name":"protein localization to mast cell secretory granule","termid":"GO:0033367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"maintenance of protein location in mast cell secretory granule","synonyms":[{"name":"maintenance of protein localization in mast cell secretory granule","type":"related"},{"name":"mast cell protein retention","type":"exact"}],"termid":"GO:0033370"}


id: PBO:0052570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine methyltransferase 2E (inactive)","termid":"PBO:0052570"}


id: PBO:0076475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TAO kinase 3","termid":"PBO:0076475"}


id: GO:0052545
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which callose is transported to, and/or maintained in, a specific location. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls.","definition_xrefs":["GOC:mtg_pamgo_17jul06","PMID:18397379"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide localization","termid":"GO:0033037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"callose localization","synonyms":[{"name":"callose localisation","type":"exact"}],"termid":"GO:0052545"}


id: GO:0044343
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes that modulates the rate or frequency of pancreatic B cell proliferation. Pancreatic B cell are cells of the pancreas that secrete insulin.","definition_xrefs":["GOC:yaf","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete canonical Wnt signaling pathway involved in regulation of type B pancreatic cell proliferation (obsolete GO:0044343)","synonyms":[{"name":"canonical Wnt receptor signaling pathway involved in pancreatic beta cell proliferation","type":"related"},{"name":"canonical Wnt receptor signaling pathway involved in regulation of pancreatic B cell proliferation","type":"exact"},{"name":"canonical Wnt receptor signaling pathway involved in regulation of type B pancreatic cell proliferation","type":"exact"},{"name":"canonical Wnt receptor signalling pathway involved in regulation of pancreatic B cell proliferation","type":"exact"},{"name":"canonical Wnt receptor signalling pathway involved in regulation of type B pancreatic cell proliferation","type":"exact"},{"name":"canonical Wnt-activated signaling pathway involved in regulation of type B pancreatic cell proliferation","type":"exact"}],"termid":"GO:0044343"}


id: FYPO:0002662
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of trehalose measured in a cell is lower than normal when the cell is subject to heat shock.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular trehalose level","termid":"FYPO:0001447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased cellular trehalose level during heat shock","synonyms":[{"name":"decreased cellular trehalose level during heat shock during mitotic cell cycle","type":"related"},{"name":"decreased cellular trehalose level during vegetative growth and during heat shock","type":"exact"},{"name":"decreased trehalose accumulation during heat shock","type":"related"},{"name":"reduced cellular trehalose level during heat shock","type":"exact"}],"termid":"FYPO:0002662"}


id: GO:0034460
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly of a uropod by rearrangement of the cytoskeleton and overlying membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uropod organization","termid":"GO:0032796"},{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection assembly","termid":"GO:0120031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"uropod assembly","synonyms":[{"name":"uropod formation","type":"exact"}],"termid":"GO:0034460"}


id: FYPO:0000691
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of DNA-1,N6-ethenoadenine N-glycosylase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000257"],"is_obsolete":false,"name":"normal DNA-1,N6-ethenoadenine N-glycosylase activity","termid":"FYPO:0000691"}


id: GO:1905754
data:
  {"annotated_genes":["SJAG_01867","SJAG_03638"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[87989,109170],"is_not":false,"summary":null,"term":"GO:1905754"}]},"cv_name":"cellular_component","definition":"Any nucleus that is part of a ascospore-type prospore.","definition_xrefs":["GOC:TermGenie","PMID:26942678","GO_REF:0000064"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus","termid":"GO:0005634"},{"relation_name":"part_of","term_name":"ascospore-type prospore","termid":"GO:0042764"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01867":null,"SJAG_03638":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005634","GO:0005575"],"is_obsolete":false,"name":"ascospore-type prospore nucleus","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cell nucleus of ascospore-type prospore","type":"exact"},{"name":"nucleus of ascospore-type prospore","type":"exact"}],"termid":"GO:1905754","terms_by_termid":{"GO:1905754":null}}


id: RO:0002585
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"has_participant","termid":"RO:0000057"},{"relation_name":"is_a","term_name":"results_in_developmental_progression_of","termid":"_global:results_in_developmental_progression_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"results_in_closure_of","termid":"RO:0002585"}


id: PBO:0048389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase","termid":"PBO:0048389"}


id: GO:0052085
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process by which a symbiont interferes with, inhibits or disrupts the normal execution of the T-cell mediated immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host adaptive immune response","termid":"GO:0039504"},{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host T-cell mediated immune response","termid":"GO:0052156"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host T-cell mediated immune response","secondary_identifiers":["GO:0052280"],"synonyms":[{"name":"down regulation by symbiont of host T-cell mediated immune response","type":"exact"},{"name":"down-regulation by symbiont of host T-cell mediated immune response","type":"exact"},{"name":"downregulation by symbiont of host T-cell mediated immune response","type":"exact"},{"name":"inhibition by symbiont of host T-cell mediated immune response","type":"narrow"},{"name":"negative regulation by organism of T-cell mediated immune response of other organism involved in symbiotic interaction","type":"broad"},{"name":"negative regulation by symbiont of host T-cell mediated immune response","type":"exact"},{"name":"suppression by symbiont of host T-cell mediated immune response","type":"exact"},{"name":"suppression of host T-cell mediated immune response","type":"exact"}],"termid":"GO:0052085"}


id: PBO:0040313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase F1 subunit alpha pseudogene 7","termid":"PBO:0040313"}


id: PBO:0088205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zn2+-dependent endopolyphosphatase; required with PPN1 to mobilize polyphosphate stores in response to phosphate starvation; member of the PPP-superfamily of metalloproteases; localizes to the vacuolar lumen via the MVB pathway; null mutant is highly sensitive to azaserine and resistant to sodium-O-vandate","termid":"PBO:0088205"}


id: PBO:0059716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO2 pseudogene 24","termid":"PBO:0059716"}


id: PBO:0069101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 348, pseudogene","termid":"PBO:0069101"}


id: GO:0018187
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The incorporation of molybdenum into a protein by L-cysteinyl molybdopterin guanine dinucleotide.","definition_xrefs":["RESID:AA0281"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-cysteine modification","termid":"GO:0018198"},{"relation_name":"is_a","term_name":"molybdenum incorporation into molybdenum-molybdopterin complex","termid":"GO:0018315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"molybdenum incorporation via L-cysteinyl molybdopterin guanine dinucleotide","termid":"GO:0018187"}


id: GO:0036253
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amiloride stimulus.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete response to amiloride (obsolete GO:0036253)","termid":"GO:0036253"}


id: PBO:0039712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apolipoprotein A4","termid":"PBO:0039712"}


id: GO:0071531
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a Rel homology domain (RHD) interaction.","definition_xrefs":["GOC:amm","InterPro:IPR011539"],"gene_count":0,"genotype_count":0,"name":"obsolete Rel homology domain-mediated complex assembly (obsolete GO:0071531)","synonyms":[{"name":"RHD domain-mediated complex assembly","type":"exact"}],"termid":"GO:0071531"}


id: PBO:0048629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamine insufficiency regulator of glutaminase lncRNA","termid":"PBO:0048629"}


id: GO:0034840
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (5R)-3-hydroxymenthone + NAD+ = mentha-1,3-dione + NADH + H+.","definition_xrefs":["UM-BBD_reactionID:r1185"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"3-hydroxymenthone dehydrogenase activity","termid":"GO:0034840"}


id: GO:0035777
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the pronephric distal tubule over time, from its formation to the mature structure. A pronephric nephron tubule is an epithelial tube that is part of the pronephros.","definition_xrefs":["GOC:yaf","GOC:mtg_kidney_jan10","PMID:18787069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pronephric nephron tubule development","termid":"GO:0039020"},{"relation_name":"is_a","term_name":"distal tubule development","termid":"GO:0072017"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pronephric distal tubule development","termid":"GO:0035777"}


id: PBO:0071758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein lateral stalk subunit P1 pseudogene 5","termid":"PBO:0071758"}


id: GO:0048718
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a cibarial fish-trap bristle are generated and organized. A cibarial fish-trap bristle is a sensory bristle on the anterior plate of the cibarium.","definition_xrefs":["FBbt:00004136","GOC:rc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chaeta morphogenesis","termid":"GO:0008407"},{"relation_name":"part_of","term_name":"clypeo-labral disc morphogenesis","termid":"GO:0007453"},{"relation_name":"part_of","term_name":"cibarial fish-trap bristle development","termid":"GO:0048725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cibarial fish-trap bristle morphogenesis","synonyms":[{"name":"fish trap bristle morphogenesis","type":"related"}],"termid":"GO:0048718"}


id: PBO:0039640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldehyde oxidase 3, pseudogene","termid":"PBO:0039640"}


id: PBO:0006175
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_input","termid":"PBO:0006175"}


id: GO:0003397
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed, self-propelled movement of a neuron that contributes to the process of retrograde extension of a dendrite of a neuron in the amphid sensory organ.","definition_xrefs":["GOC:tb","GOC:ascb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron migration involved in dendrite retrograde extension","termid":"GO:0003395"},{"relation_name":"part_of","term_name":"amphid sensory organ dendrite retrograde extension","termid":"GO:0003391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuron migration involved in amphid sensory organ dendrite retrograde extension","termid":"GO:0003397"}


id: PBO:0080012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 14","termid":"PBO:0080012"}


id: MOD:01653
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that is produced by formation of an adduct with 5-dimethylaminonaphthalene-1-sulfonyl chloride, dansyl chloride.","definition_xrefs":["Unimod:139","DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfonyl halide reagent derivatized residue","termid":"MOD:01652"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dansyl chloride derivatized residue","synonyms":[{"name":"5-dimethylaminonaphthalene-1-sulfonyl","type":"related"},{"name":"Dansyl","type":"related"},{"name":"Dansyl (Dns)","type":"exact"},{"name":"DansylRes","type":"exact"}],"termid":"MOD:01653"}


id: GO:0090604
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which planktonically growing microorganisms grow at the surface of a liquid-air interface and produce extracellular polymers that facilitate matrix formation, resulting in a change in the organisms' growth rate and gene transcription.","definition_xrefs":["GOC:di","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biofilm formation","termid":"GO:0042710"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"surface biofilm formation","termid":"GO:0090604"}


id: GO:0018639
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: toluene + 1/2 O2 = benzyl alcohol, and xylene + 1/2 O2 = methylbenzyl alcohol.","definition_xrefs":["UM-BBD_enzymeID:e0172"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"xylene monooxygenase activity","secondary_identifiers":["EC:1.14.13.-"],"termid":"GO:0018639"}


id: PBO:0077378
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 120A","termid":"PBO:0077378"}


id: PBO:0086426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative hexokinase; transcript is upregulated during sporulation and the unfolded protein response; YLR446W is not an essential gene","termid":"PBO:0086426"}


id: PBO:0043808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxypeptidase N subunit 2","termid":"PBO:0043808"}


id: PBO:0078514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 7","termid":"PBO:0078514"}


id: FYPO:0001529
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of GTP binding by a gene product (usually a protein) in a mutant is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal GTP binding","termid":"FYPO:0001528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"decreased GTP binding","synonyms":[{"name":"reduced GTP binding","type":"exact"}],"termid":"FYPO:0001529"}


id: PATO:0000586
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A size quality which is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"size","termid":"PATO:0000117"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased size","secondary_identifiers":["PATO:0001202"],"synonyms":[{"name":"big","type":"related"},{"name":"enlarged","type":"related"},{"name":"expanded","type":"related"},{"name":"great","type":"related"},{"name":"large","type":"related"}],"termid":"PATO:0000586"}


id: PBO:0110375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IL9R pseudogene 1","termid":"PBO:0110375"}


id: PBO:0061448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor subfamily 3 group C member 2","termid":"PBO:0061448"}


id: GO:0042290
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete URM1 hydrolase activity (obsolete GO:0042290)","synonyms":[{"name":"URM1 hydrolase activity","type":"exact"}],"termid":"GO:0042290"}


id: PBO:0056944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR9-3 host gene","termid":"PBO:0056944"}


id: MOD:00570
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Natural or modified residues with a mass of 71.037114 Da.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"residues isobaric at a resolution below 0.000001 Da","termid":"MOD:00569"},{"relation_name":"is_a","term_name":"residues isobaric at 71.0-71.1 Da","termid":"MOD:00769"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"residues isobaric at 71.037114 Da","termid":"MOD:00570"}


id: PBO:0079759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncoupling protein 2","termid":"PBO:0079759"}


id: GO:1900026
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of substrate adhesion-dependent cell spreading.","definition_xrefs":["GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell-substrate adhesion","termid":"GO:0010811"},{"relation_name":"is_a","term_name":"regulation of substrate adhesion-dependent cell spreading","termid":"GO:1900024"},{"relation_name":"positively_regulates","term_name":"substrate adhesion-dependent cell spreading","termid":"GO:0034446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"positive regulation of substrate adhesion-dependent cell spreading","synonyms":[{"name":"positive regulation of cell spreading during cell substrate adhesion","type":"exact"},{"name":"positive regulation of substrate adhesion dependent cell spreading","type":"exact"},{"name":"up regulation of cell spreading during cell substrate adhesion","type":"exact"},{"name":"up regulation of substrate adhesion dependent cell spreading","type":"exact"},{"name":"up regulation of substrate adhesion-dependent cell spreading","type":"related"}],"termid":"GO:1900026"}


id: SOFP:citation
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"citation","termid":"SOFP:citation"}


id: FYECO:0000107
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which aminopyrimidine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ aminopyrimidine","termid":"FYECO:0000107"}


id: GO:0042001
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The determination of sex and sexual phenotypes in a hermaphroditic organism's soma. An example of this is found in Caenorhabditis elegans.","definition_xrefs":["GOC:ems"],"direct_ancestors":[{"relation_name":"is_a","term_name":"somatic sex determination","termid":"GO:0018993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hermaphrodite somatic sex determination","secondary_identifiers":["GO:0042002"],"termid":"GO:0042001"}


id: PBO:0056654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 21","termid":"PBO:0056654"}


id: PBO:0081529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 439","termid":"PBO:0081529"}


id: PBO:0083887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ferulic acid decarboxylase; involved in the decarboxylation of aromatic carboxylic acids such as phenylacrylic (cinnamic) acid, ferulic acid and coumaric acid and formation of the corresponding vinyl derivatives; overexpression of both Pad1p and Fdc1p increases decarboxylase activity due to the Pad1p-catalyzed formation of a diffusible cofactor required for Fdc1p activity; homolog of E. coli UbiD; GFP-fusion protein localizes to the cytoplasm in an HTP study","termid":"PBO:0083887"}


id: GO:0036014
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region between the inner and outer lipid bilayers of the cyanelle envelope; includes the peptidoglycan layer.","definition_xrefs":["GOC:aa"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid intermembrane space","termid":"GO:0009529"},{"relation_name":"part_of","term_name":"cyanelle envelope","termid":"GO:0033112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"cyanelle intermembrane space","synonyms":[{"name":"cyanelle envelope lumen","type":"exact"},{"name":"cyanelle periplasm","type":"exact"}],"termid":"GO:0036014"}


id: PBO:0063096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"par-3 family cell polarity regulator beta","termid":"PBO:0063096"}


id: PBO:0054732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2141","termid":"PBO:0054732"}


id: PBO:0001688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L9 (predicted)","termid":"PBO:0001688"}


id: GO:0031679
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: NADH + H+ + plastoquinone = NAD+ + plastoquinol.","definition_xrefs":["EC:1.6.99.6","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete NADH dehydrogenase (plastoquinone) activity (obsolete GO:0031679)","synonyms":[{"name":"NADH:plastoquinone reductase activity","type":"exact"}],"termid":"GO:0031679"}


id: PBO:0065580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine kinase 2","termid":"PBO:0065580"}


id: PBO:0048104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FtsJ RNA 2'-O-methyltransferase 3","termid":"PBO:0048104"}


id: GO:0062104
data:
  {"annotated_genes":["SJAG_04682"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101036],"is_not":false,"summary":null,"term":"GO:0062104"}]},"cv_name":"molecular_function","definition":"Binding to a region of RNA containing a Pumilio-response element element. The consensus sequence for the element is UGUAAAUA.","definition_xrefs":["PMID:30601114"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA binding","termid":"GO:0003723"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04682":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0005488","GO:0003723","GO:0003674"],"is_obsolete":false,"name":"pumilio-response element binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"PRE binding","type":"exact"}],"termid":"GO:0062104","terms_by_termid":{"GO:0062104":null}}


id: GO:0051676
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving pullulan, a neutral linear polysaccharide composed of repeating units of maltotriose joined by alpha-(1,6)-linkages.","definition_xrefs":["PMID:15013381"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucan metabolic process","termid":"GO:0044042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"pullulan metabolic process","synonyms":[{"name":"pullulan metabolism","type":"exact"}],"termid":"GO:0051676"}


id: GO:0061816
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The selective degradation of proteasomes by macroautophagy.","definition_xrefs":["GOC:dph","PMID:26670610","GOC:se","PMID:27477278"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macroautophagy","termid":"GO:0016236"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006914"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0006914"],"is_obsolete":false,"name":"proteaphagy","termid":"GO:0061816"}


id: SO:1000115
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000115 sequence_variant_causing_complex_3D_structural_change (obsolete SO:1000115)","synonyms":[{"name":"mutation causing complex 3D structural change","type":"related"},{"name":"sequence variant causing complex 3D structural change","type":"exact"}],"termid":"SO:1000115"}


id: PBO:0109973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"name descirption, ANKyrin repeats","termid":"PBO:0109973"}


id: PBO:0079963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP9Y pseudogene 1","termid":"PBO:0079963"}


id: FYPO:0007463
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the termination of RNA transcription from a DNA template is normal (i.e. indistinguishable from wild type).","definition_xrefs":["GO:0006353","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription phenotype during vegetative growth","termid":"FYPO:0000290"},{"relation_name":"is_a","term_name":"normal metabolic process during vegetative growth","termid":"FYPO:0000859"},{"relation_name":"is_a","term_name":"normal RNA metabolic process","termid":"FYPO:0004850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000294","FYPO:0000257"],"is_obsolete":false,"name":"normal transcription termination","synonyms":[{"name":"normal DNA-templated transcription, termination","type":"exact"},{"name":"normal termination of transcription","type":"exact"},{"name":"normal transcription termination during mitotic cell cycle","type":"related"},{"name":"normal transcription termination during vegetative growth","type":"exact"}],"termid":"FYPO:0007463"}


id: PBO:0073934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC17A6 divergent transcript","termid":"PBO:0073934"}


id: GO:0006326
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete bent DNA binding (obsolete GO:0006326)","synonyms":[{"name":"bent DNA binding","type":"exact"}],"termid":"GO:0006326"}


id: GO:0030759
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3',4',5,6-tetrahydroxy-3,7-dimethoxyflavone + S-adenosyl-L-methionine(1+) = 3',4',5-trihydroxy-3,6,7-trimethoxyflavone + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["RHEA:18717","EC:2.1.1.84"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016741"],"is_obsolete":false,"name":"methylquercetagetin 6-O-methyltransferase activity","secondary_identifiers":["MetaCyc:2.1.1.84-RXN","KEGG_REACTION:R04505"],"synonyms":[{"name":"6-OMT","type":"related"},{"name":"S-adenosyl-L-methionine:3',4',5,6-tetrahydroxy-3,7-dimethoxyflavone 6-O-methyltransferase activity","type":"related"},{"name":"flavonol 6-O-methyltransferase activity","type":"related"},{"name":"flavonol 6-methyltransferase activity","type":"related"}],"termid":"GO:0030759"}


id: PBO:0070394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RORA antisense RNA 1","termid":"PBO:0070394"}


id: GO:0031063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the removal of acetyl groups from histones.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of histone deacetylation (obsolete GO:0031063)","termid":"GO:0031063"}


id: PBO:0059377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S21 pseudogene 2","termid":"PBO:0059377"}


id: FYPO:0006104
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of retrotransposon integration is decreased.","definition_xrefs":["PMID:26358720","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transposition","termid":"FYPO:0000591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased retrotransposon integration","synonyms":[{"name":"decreased retrotransposon integration during mitotic cell cycle","type":"related"},{"name":"decreased retrotransposon integration during vegetative growth","type":"exact"},{"name":"decreased transposon integration involved in RNA-mediated transposition","type":"exact"},{"name":"reduced retrotransposon integration","type":"exact"}],"termid":"FYPO:0006104"}


id: GO:0018398
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The bromination of peptidyl-phenylalanine to form L-3'-bromophenylalanine.","definition_xrefs":["RESID:AA0175"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-phenylalanine bromination to L-3'-bromophenylalanine (obsolete GO:0018398)","termid":"GO:0018398"}


id: PBO:0067479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 612, pseudogene","termid":"PBO:0067479"}


id: PBO:0086311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with rhodanese activity; contains a rhodanese-like domain similar to Rdl1p, Uba4p, Tum1p, and Ych1p; overexpression causes a cell cycle delay; null mutant displays elevated frequency of mitochondrial genome loss","termid":"PBO:0086311"}


id: PBO:0012559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein sequence feature","termid":"PBO:0012559"}


id: PBO:0044743
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 20 pseudogene 1","termid":"PBO:0044743"}


id: PR:Q9HDZ2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A PGAP2-interacting protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01302","PANTHER:PTHR14859:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein cwh43 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC589.12","secondary_identifiers":["UniProtKB:Q9HDZ2"],"synonyms":[{"name":"Spom972h-CWH43","type":"exact"}],"termid":"PR:Q9HDZ2"}


id: GO:1902989
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any telomere maintenance via semi-conservative replication that is involved in meiotic cell cycle.","definition_xrefs":["GO_REF:0000060","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telomere maintenance via semi-conservative replication","termid":"GO:0032201"},{"relation_name":"is_a","term_name":"chromosome organization involved in meiotic cell cycle","termid":"GO:0070192"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0032200"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0008150","GO:0032200","GO:0007049","GO:0006260"],"is_obsolete":false,"name":"meiotic telomere maintenance via semi-conservative replication","synonyms":[{"name":"equal telomere replication involved in meiotic cell cycle","type":"related"},{"name":"telomeric fork progression involved in meiotic cell cycle","type":"narrow"},{"name":"telomeric replication fork progression involved in meiotic cell cycle","type":"narrow"}],"termid":"GO:1902989"}


id: FYPO:0007114
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the amount, distribution, and morphology of microtubule bundles are normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component","termid":"FYPO:0001233"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal microtubule bundle","synonyms":[{"name":"normal MT bundle","type":"exact"},{"name":"normal microtubule array","type":"related"},{"name":"normal microtubule bundle physical object quality","type":"exact"}],"termid":"FYPO:0007114"}


id: GO:2001204
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of osteoclast development.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hemopoiesis","termid":"GO:1903706"},{"relation_name":"regulates","term_name":"osteoclast development","termid":"GO:0036035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of osteoclast development","synonyms":[{"name":"regulation of osteoclast cell development","type":"exact"}],"termid":"GO:2001204"}


id: PBO:0027099
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_tDNA_antisense_small_RNA_level","termid":"PBO:0027099"}


id: GO:0099633
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within the membrane adjacent to a postsynaptic specialization (e.g. post synaptic density).","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to organelle","termid":"GO:0033365"},{"relation_name":"is_a","term_name":"protein localization to postsynaptic membrane","termid":"GO:1903539"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to postsynaptic specialization membrane","synonyms":[{"name":"protein localisation in postsynaptic specialization membrane","type":"exact"}],"termid":"GO:0099633"}


id: PR:P21536
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- atp8 gene.","definition_xrefs":["UniProtKB:P21536","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase protein 8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPMIT.09","synonyms":[{"name":"A6L (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"F-ATPase subunit 8 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-atp8","type":"exact"}],"termid":"PR:P21536"}


id: PBO:0064237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol specific phospholipase C X domain containing 1","termid":"PBO:0064237"}


id: FYPO:0005028
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which dimethylation of lysine at position 20 of histone H4 occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone methylation during vegetative growth","termid":"FYPO:0000870"},{"relation_name":"is_a","term_name":"abnormal histone H4-K20 methylation during vegetative growth","termid":"FYPO:0004215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0002494","FYPO:0001985","FYPO:0000002","FYPO:0002274"],"is_obsolete":false,"name":"decreased H4-K20 dimethylation during vegetative growth","synonyms":[{"name":"decreased H4K20me2 during vegetative growth","type":"exact"},{"name":"decreased histone H4-K20 dimethylation during mitotic cell cycle","type":"related"},{"name":"decreased histone H4-K20 dimethylation during vegetative growth","type":"exact"},{"name":"decreased histone lysine H4-K20 dimethylation during vegetative growth","type":"exact"},{"name":"reduced histone H4-K20 dimethylation during vegetative growth","type":"exact"}],"termid":"FYPO:0005028"}


id: PBO:0090108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase interacting protein involved in vesicle tethering at the Golgi","termid":"PBO:0090108"}


id: GO:0019458
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of methionine, via the intermediate 2-oxobutanoate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methionine catabolic process","termid":"GO:0009087"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281","GO:0006790","GO:0044248"],"is_obsolete":false,"name":"methionine catabolic process via 2-oxobutanoate","secondary_identifiers":["MetaCyc:PWY-701"],"synonyms":[{"name":"methionine breakdown via 2-oxobutanoate","type":"exact"},{"name":"methionine degradation via 2-oxobutanoate","type":"exact"}],"termid":"GO:0019458"}


id: GO:1905381
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of snRNA transcription mediated by RNA polymerase II.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:10022900","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of transcription by RNA polymerase II","termid":"GO:0000122"},{"relation_name":"is_a","term_name":"regulation of snRNA transcription by RNA polymerase II","termid":"GO:1905380"},{"relation_name":"negatively_regulates","term_name":"snRNA transcription by RNA polymerase II","termid":"GO:0042795"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0016073"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"negatively_regulates","termid":"GO:0006351"},{"rel_name":"negatively_regulates","termid":"GO:0016073"}],"interesting_parent_ids":["GO:0006355","GO:0016073","GO:0006351","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of snRNA transcription by RNA polymerase II","synonyms":[{"name":"down regulation of snRNA transcription from Pol II promoter","type":"exact"},{"name":"down regulation of snRNA transcription from RNA polymerase II promoter","type":"exact"},{"name":"down-regulation of snRNA transcription from Pol II promoter","type":"exact"},{"name":"down-regulation of snRNA transcription from RNA polymerase II promoter","type":"exact"},{"name":"downregulation of snRNA transcription from Pol II promoter","type":"exact"},{"name":"downregulation of snRNA transcription from RNA polymerase II promoter","type":"exact"},{"name":"inhibition of snRNA transcription from Pol II promoter","type":"narrow"},{"name":"inhibition of snRNA transcription from RNA polymerase II promoter","type":"narrow"},{"name":"negative regulation of snRNA transcription from Pol II promoter","type":"exact"},{"name":"negative regulation of snRNA transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:1905381"}


id: PBO:0058498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5692a-1","termid":"PBO:0058498"}


id: PBO:0079293
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TTLL10 antisense RNA 1","termid":"PBO:0079293"}


id: PBO:0051797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IQ motif containing M","termid":"PBO:0051797"}


id: PBO:0085107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclear SAM-dependent mono- and asymmetric methyltransferase; modifies hnRNPs, including Npl3p and Hrp1p, affecting their activity and nuclear export; methylates U1 snRNP protein Snp1p, ribosomal protein Rps2p, and histones H3 and H4; interacts genetically with genes encoding components of Rpd3(L) and this interaction is important for Rpd3 recruitment to the subtelomeric region","termid":"PBO:0085107"}


id: PBO:0089420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar RNA binding protein, human KNOP1 ortholog, implicated in mRNA processing","termid":"PBO:0089420"}


id: GO:0004317
data:
  {"annotated_genes":["SJAG_04107"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96875],"is_not":false,"summary":null,"term":"GO:0004317"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: (3R)-hydroxypalmitoyl-[acyl-carrier protein] = 2-hexadecenoyl-[acyl-carrier protein] + H2O.","definition_xrefs":["RHEA:41908","PMID:8088535"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity","termid":"GO:0019171"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04107":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R04462"],"synonyms":[{"name":"(3R)-3-hydroxypalmitoyl-acyl-carrier-protein hydro-lyase (hexadec-2-enoyl-acyl-carrier protein-forming)","type":"exact"},{"name":"(3R)-3-hydroxypalmitoyl-acyl-carrier-protein hydro-lyase activity","type":"exact"},{"name":"(3R)-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity","type":"exact"},{"name":"3-hydroxypalmitoyl-ACP dehydratase activity","type":"exact"},{"name":"3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase activity","type":"exact"},{"name":"3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity","type":"exact"},{"name":"3-hydroxypalmitoyl-acyl-carrier-protein dehydratase activity","type":"exact"}],"termid":"GO:0004317","terms_by_termid":{"GO:0004317":null}}


id: PBO:0054534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1934","termid":"PBO:0054534"}


id: GO:0002604
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of dendritic cell antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation","termid":"GO:0002577"},{"relation_name":"regulates","term_name":"dendritic cell antigen processing and presentation","termid":"GO:0002468"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of dendritic cell antigen processing and presentation","termid":"GO:0002604"}


id: GO:1903479
data:
  {"annotated_genes":["SJAG_04498"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94177],"is_not":false,"summary":null,"term":"GO:1903479"}]},"cv_name":"biological_process","definition":"Any actin filament organization that is involved in mitotic actomyosin contractile ring assembly.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie","GO_REF:0000060"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic cell cycle process","termid":"GO:1903047"},{"relation_name":"is_a","term_name":"actomyosin contractile ring assembly actin filament organization","termid":"GO:2000689"},{"relation_name":"part_of","term_name":"mitotic actomyosin contractile ring assembly","termid":"GO:1903475"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04498":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0030036"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0000281"},{"rel_name":"part_of","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0030036","GO:0007049","GO:0007010","GO:0000281"],"is_obsolete":false,"name":"mitotic actomyosin contractile ring assembly actin filament organization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"actin filament organisation involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"actin filament organization involved in mitotic actomyosin contractile ring assembly","type":"exact"}],"termid":"GO:1903479","terms_by_termid":{"GO:1903479":null}}


id: GO:0008558
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalyses the reaction: ATP + H2O + guanine(out) = ADP + phosphate + guanine(in).","definition_xrefs":["RHEA:20832"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanine transmembrane transporter activity","termid":"GO:0015208"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"ABC-type guanine transporter activity","secondary_identifiers":["EC:7.6.2.6","MetaCyc:3.6.3.37-RXN"],"synonyms":[{"name":"ATP-dependent guanine transmembrane transporter activity","type":"related"},{"name":"ATPase-coupled guanine transmembrane transporter activity","type":"related"},{"name":"guanine ABC transporter","type":"exact"},{"name":"guanine-transporting ATPase activity","type":"related"}],"termid":"GO:0008558"}


id: GO:0052014
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of protein macromolecules within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete catabolism by symbiont of host protein (obsolete GO:0052014)","synonyms":[{"name":"catabolism by organism of host protein","type":"exact"}],"termid":"GO:0052014"}


id: PBO:0055374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2803","termid":"PBO:0055374"}


id: PR:O94335
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02425"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit stt3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1271.02","secondary_identifiers":["UniProtKB:O94335"],"synonyms":[{"name":"Spom972h-STT3B","type":"exact"},{"name":"oligosaccharyl transferase subunit stt3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94335"}


id: PBO:0081648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 573","termid":"PBO:0081648"}


id: MOD:01901
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks two L-threonine residues to form L-threonine 5-methyloxazole-4-carboxylic acid.","definition_xrefs":["PubMed:21950656","RESID:AA0572","PubMed:21568297"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxazole/oxazoline ring crosslinked residues (Thr)","termid":"MOD:01422"},{"relation_name":"is_a","term_name":"didehydrogenated residue","termid":"MOD:01888"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-threonine 5-methyloxazole-4-carboxylic acid","synonyms":[{"name":"2-[(1S,2R)-1-amino-2-hydroxypropyl]-5-methyl-1,3-oxazole-4-carboxylic acid","type":"exact"},{"name":"2-[(1S,2R)-1-azanyl-2-hydroxypropyl]-5-methyl-1,3-oxazole-4-carboxylic acid","type":"exact"},{"name":"CROSSLNK 5-methyloxazole-4-carboxylic acid (Thr-Thr)","type":"exact"},{"name":"L-threonine 5-methyloxazole-4-carboxylic acid","type":"exact"}],"termid":"MOD:01901"}


id: PBO:0060564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nibrin","termid":"PBO:0060564"}


id: PBO:0077890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor protein p63 regulated 1 like pseudogene 1","termid":"PBO:0077890"}


id: GO:0070356
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A SNARE complex that contains synaptotagmin, synaptobrevin 2 (VAMP2), SNAP-25, syntaxin 1a, syntaxin1b, and Rab3a (or orthologs thereof).","definition_xrefs":["PMID:7654227"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SNARE complex","termid":"GO:0031201"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"synaptotagmin-synaptobrevin 2-SNAP-25-syntaxin-1a-syntaxin-1b-Rab3a complex","synonyms":[{"name":"SNARE complex (STX1a, STX1b, SNAP25, RAB3a, SYT1, VAMP2)","type":"narrow"},{"name":"STX1a-STX1b-SNAP25-RAB3a-SYT1-VAMP2 complex","type":"narrow"}],"termid":"GO:0070356"}


id: PBO:0056295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule associated protein 1B","termid":"PBO:0056295"}


id: PBO:0049504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A clustered histone 11","termid":"PBO:0049504"}


id: GO:1903077
data:
  {"annotated_genes":["SJAG_04597","SJAG_02392","SJAG_03970"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91994],"is_not":false,"summary":null,"term":"GO:1903077"},{"annotations":[84260],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042997"},{"annotations":[90548],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140325"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to plasma membrane.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:BHF","GOC:rl","PMID:11602640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to plasma membrane","termid":"GO:1903076"},{"relation_name":"is_a","term_name":"negative regulation of protein localization to cell periphery","termid":"GO:1904376"},{"relation_name":"is_a","term_name":"negative regulation of protein localization to membrane","termid":"GO:1905476"},{"relation_name":"negatively_regulates","term_name":"protein localization to plasma membrane","termid":"GO:0072659"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02392":null,"SJAG_03970":null,"SJAG_04597":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein localization to plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1905964","GO:0090005"],"synonyms":[{"name":"down regulation of protein localisation in plasma membrane","type":"exact"},{"name":"down regulation of protein localization in plasma membrane","type":"exact"},{"name":"down regulation of protein localization to plasma membrane","type":"exact"},{"name":"down regulation of protein targeting to plasma membrane","type":"related"},{"name":"down regulation of protein-plasma membrane targeting","type":"related"},{"name":"down-regulation of protein localisation in plasma membrane","type":"exact"},{"name":"down-regulation of protein localization in plasma membrane","type":"exact"},{"name":"down-regulation of protein localization to plasma membrane","type":"exact"},{"name":"down-regulation of protein targeting to plasma membrane","type":"related"},{"name":"down-regulation of protein-plasma membrane targeting","type":"related"},{"name":"downregulation of protein localisation in plasma membrane","type":"exact"},{"name":"downregulation of protein localization in plasma membrane","type":"exact"},{"name":"downregulation of protein localization to plasma membrane","type":"exact"},{"name":"downregulation of protein targeting to plasma membrane","type":"related"},{"name":"downregulation of protein-plasma membrane targeting","type":"related"},{"name":"inhibition of protein localisation in plasma membrane","type":"narrow"},{"name":"inhibition of protein localization in plasma membrane","type":"narrow"},{"name":"inhibition of protein localization to plasma membrane","type":"narrow"},{"name":"inhibition of protein targeting to plasma membrane","type":"narrow"},{"name":"inhibition of protein-plasma membrane targeting","type":"narrow"},{"name":"negative regulation of establishment of protein localisation in plasma membrane","type":"related"},{"name":"negative regulation of establishment of protein localization in plasma membrane","type":"related"},{"name":"negative regulation of establishment of protein localization to plasma membrane","type":"related"},{"name":"negative regulation of protein localisation in plasma membrane","type":"related"},{"name":"negative regulation of protein localization in plasma membrane","type":"exact"},{"name":"negative regulation of protein targeting to plasma membrane","type":"related"},{"name":"negative regulation of protein-plasma membrane targeting","type":"related"}],"termid":"GO:1903077","terms_by_termid":{"GO:0042997":null,"GO:0140325":null,"GO:1903077":null}}


id: GO:0018165
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The uridylylation of peptidyl-tyrosine to form peptidyl-O4'-(phospho-5'-uridine)-L-tyrosine, found in glutamine synthetase.","definition_xrefs":["RESID:AA0256"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein uridylylation","termid":"GO:0018177"},{"relation_name":"is_a","term_name":"peptidyl-tyrosine modification","termid":"GO:0018212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-tyrosine uridylylation","termid":"GO:0018165"}


id: FYPO:0005959
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which a spindle forms with microtubules emanating from three or more poles.","definition_xrefs":["PomBase:mah","PMID:15992541"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal spindle morphology","termid":"FYPO:0003607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002399","FYPO:0000120","FYPO:0000002","FYPO:0005447","FYPO:0000054"],"is_obsolete":false,"name":"multipolar spindle","termid":"FYPO:0005959"}


id: PBO:0084780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial peripheral inner membrane protein; contains a FAD cofactor in a domain exposed in the intermembrane space; exhibits redox activity in vitro; likely participates in ligation of heme to acytochromes c and c1 (Cyc1p and Cyt1p)","termid":"PBO:0084780"}


id: PBO:0090547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cdc25 family phosphatase Ibp1, unknown role, implicated in DNA replication","termid":"PBO:0090547"}


id: GO:0052134
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of environmental oxygen on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete negative aerotaxis on or near host (obsolete GO:0052134)","termid":"GO:0052134"}


id: GO:0004226
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: peptidyl-Gly-Xaa + H2O = peptidyl-Gly + Xaa.","definition_xrefs":["EC:3.4.17.4"],"gene_count":0,"genotype_count":0,"name":"obsolete Gly-X carboxypeptidase activity (obsolete GO:0004226)","synonyms":[{"name":"Gly-X carboxypeptidase activity","type":"exact"},{"name":"Gly-Xaa carboxypeptidase activity","type":"related"},{"name":"carboxypeptidase S activity","type":"related"},{"name":"carboxypeptidase a","type":"related"},{"name":"glycine carboxypeptidase activity","type":"related"},{"name":"peptidase alpha","type":"related"},{"name":"yeast carboxypeptidase activity","type":"related"}],"termid":"GO:0004226"}


id: GO:0003336
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The delamination process that results in the shedding of a corneocyte from the surface of the epidermis.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"delamination","termid":"GO:0060232"},{"relation_name":"part_of","term_name":"corneocyte development","termid":"GO:0003335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"corneocyte desquamation","synonyms":[{"name":"epidermal desquamation","type":"exact"}],"termid":"GO:0003336"}


id: PR:Q9P3E6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC750.05c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P3E6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C750.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC750.05c","synonyms":[{"name":"Spom972h-SPAC750.05c","type":"exact"}],"termid":"PR:Q9P3E6"}


id: GO:1990371
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A response that results in a state of tolerance to phenol.","definition_xrefs":["GOC:mengo_curators","PMID:23356676"],"gene_count":0,"genotype_count":0,"name":"obsolete process resulting in tolerance to phenol (obsolete GO:1990371)","termid":"GO:1990371"}


id: PBO:0062354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily N member 2","termid":"PBO:0062354"}


id: PBO:0090563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor, MADS-box Pvg4","termid":"PBO:0090563"}


id: PBO:0048857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GOLGA2 pseudogene 2 Y-linked","termid":"PBO:0048857"}


id: MOD:00080
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamine residue to N5-methyl-L-glutamine.","definition_xrefs":["ChEBI:17592","PubMed:11118225","DeltaMass:166","PubMed:11875433","PubMed:365579","RESID:AA0071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-methylated residue","termid":"MOD:00602"},{"relation_name":"is_a","term_name":"monomethylated L-glutamine","termid":"MOD:00722"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N5-methyl-L-glutamine","synonyms":[{"name":"(2S)-2-amino-5-methylamino-5-oxopentanoic acid","type":"exact"},{"name":"2-amino-N5-methylpentanediamic acid","type":"exact"},{"name":"MOD_RES N5-methylglutamine","type":"exact"},{"name":"Methyl","type":"related"},{"name":"Methylation","type":"related"},{"name":"N(delta)-methylglutamine","type":"exact"},{"name":"N-methylglutamine","type":"exact"},{"name":"N5-methyl-L-glutamine","type":"exact"},{"name":"N5-methylated L-glutamine","type":"exact"},{"name":"N5Me1Gln","type":"exact"},{"name":"gamma-methylglutamine","type":"exact"}],"termid":"MOD:00080"}


id: PBO:0058923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIRLET7B host gene","termid":"PBO:0058923"}


id: PBO:0047375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 6","termid":"PBO:0047375"}


id: GO:0002238
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of fungal origin such as chito-octamer oligosaccharide.","definition_xrefs":["GOC:rl","GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to external biotic stimulus","termid":"GO:0043207"},{"relation_name":"part_of","term_name":"response to fungus","termid":"GO:0009620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to molecule of fungal origin","synonyms":[{"name":"response to fungus associated molecule","type":"exact"}],"termid":"GO:0002238"}


id: PBO:0040811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BICD cargo adaptor 2","termid":"PBO:0040811"}


id: GO:0071035
data:
  {"annotated_genes":["SJAG_01176","SJAG_04006","SJAG_04153","SJAG_01818","SJAG_04321","SJAG_03745","SJAG_00854","SJAG_01191","SJAG_03179","SJAG_04084","SJAG_04824","SJAG_04818","SJAG_03984","SJAG_01521"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84546,88378,89199,92057,93394,98216,100530,101376,102583,103582,109400,111567,112014,114404],"is_not":false,"summary":null,"term":"GO:0071035"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a ribosomal RNA (rRNA) molecule, including RNA fragments released as part of processing the primary transcript into multiple mature rRNA species, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target rRNA.","definition_xrefs":["PMID:17652137","GOC:krc","GOC:dgf","PMID:15173578","PMID:15935758","PMID:18591258","PMID:15572680"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear RNA surveillance","termid":"GO:0071027"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00854":null,"SJAG_01176":null,"SJAG_01191":null,"SJAG_01521":null,"SJAG_01818":null,"SJAG_03179":null,"SJAG_03745":null,"SJAG_03984":null,"SJAG_04006":null,"SJAG_04084":null,"SJAG_04153":null,"SJAG_04321":null,"SJAG_04818":null,"SJAG_04824":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nuclear polyadenylation-dependent rRNA catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"nuclear poly(A)-dependent rRNA catabolic process","type":"related"}],"termid":"GO:0071035","terms_by_termid":{"GO:0071035":null}}


id: PBO:0088666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ndc80 complex subunit Nuf2","termid":"PBO:0088666"}


id: PBO:0071908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 47","termid":"PBO:0071908"}


id: PBO:0085906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; may interact with ribosomes, based on co-purification experiments; authentic, non-tagged protein is detected in purified mitochondria in high-throughput studies; potential orthologs found in other fungi","termid":"PBO:0085906"}


id: GO:1990138
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Long distance growth of a single neuron projection involved in cellular development. A neuron projection is a prolongation or process extending from a nerve cell, e.g. an axon or dendrite.","definition_xrefs":["GOC:rl","PMID:22790009","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental cell growth","termid":"GO:0048588"},{"relation_name":"is_a","term_name":"developmental growth involved in morphogenesis","termid":"GO:0060560"},{"relation_name":"part_of","term_name":"neuron projection morphogenesis","termid":"GO:0048812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuron projection extension","synonyms":[{"name":"neurite extension","type":"narrow"},{"name":"neuron process extension","type":"exact"},{"name":"neuron protrusion extension","type":"exact"},{"name":"neuronal cell projection extension","type":"exact"}],"termid":"GO:1990138"}


id: PBO:0054391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1787","termid":"PBO:0054391"}


id: PBO:0073342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family B member 4","termid":"PBO:0073342"}


id: PBO:0027438
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_nonsense-mediated_decay","termid":"PBO:0027438"}


id: PBO:0084179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Histone acetyltransferase (HAT) catalytic subunit of the SAS complex; acetylates free histones and nucleosomes and regulates transcriptional silencing; member of the MYSTacetyltransferase family; other members are Sas4p and Sas5p","termid":"PBO:0084179"}


id: PBO:0028962
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_medial_cortical_node","termid":"PBO:0028962"}


id: GO:0047671
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: anthranilate + 2 ATP + L-phenylalanine + S-adenosyl-L-methionine = 2 AMP + cyclopeptine + 2 diphosphate + 2 H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:35091","EC:6.3.2.40","PMID:2995633"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"cyclopeptine synthase activity","secondary_identifiers":["MetaCyc:RXN-13989","KEGG_REACTION:R00979"],"synonyms":[{"name":"ATP:anthranilate adenylyltransferase activity","type":"exact"},{"name":"anthranilate adenylyltransferase activity","type":"related"}],"termid":"GO:0047671"}


id: PBO:0073364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family H member 1","termid":"PBO:0073364"}


id: GO:0032075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of nuclease activity, the hydrolysis of ester linkages within nucleic acids.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nuclease activity","termid":"GO:0032069"},{"relation_name":"is_a","term_name":"positive regulation of nucleobase-containing compound metabolic process","termid":"GO:0045935"},{"relation_name":"is_a","term_name":"positive regulation of hydrolase activity","termid":"GO:0051345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of nuclease activity","synonyms":[{"name":"activation of nuclease activity","type":"narrow"},{"name":"nuclease activator","type":"related"},{"name":"stimulation of nuclease activity","type":"narrow"},{"name":"up regulation of nuclease activity","type":"exact"},{"name":"up-regulation of nuclease activity","type":"exact"},{"name":"upregulation of nuclease activity","type":"exact"}],"termid":"GO:0032075"}


id: GO:0140878
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of griseofulvin, an important antifungal drug that has been in use for a long time for treating dermatophyte infections.","definition_xrefs":["PMID:20534346","PMID:23978092"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mycotoxin biosynthetic process","termid":"GO:0043386"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"griseofulvin biosynthetic process","secondary_identifiers":["MetaCyc:PWY-7653"],"synonyms":[{"name":"griseofulvin anabolism","type":"exact"},{"name":"griseofulvin biosynthesis","type":"exact"},{"name":"griseofulvin formation","type":"exact"},{"name":"griseofulvin synthesis","type":"exact"}],"termid":"GO:0140878"}


id: GO:1990933
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which the microtubule cytoskeleton is attached to the nuclear envelope.","definition_xrefs":["PMID:20507227","PMID:14655046"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule cytoskeleton organization","termid":"GO:0000226"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007010","GO:0000226","GO:0008150"],"is_obsolete":false,"name":"microtubule cytoskeleton attachment to nuclear envelope","termid":"GO:1990933"}


id: GO:0009536
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.","definition_xrefs":["ISBN:0198547684","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"plastid","secondary_identifiers":["Wikipedia:Plastid"],"termid":"GO:0009536"}


id: PBO:0038558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abl interactor 1","termid":"PBO:0038558"}


id: PBO:0039353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosylmethionine decarboxylase 1 pseudogene 3","termid":"PBO:0039353"}


id: PBO:0066866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 166","termid":"PBO:0066866"}


id: GO:0048210
data:
  {"annotated_genes":["SJAG_03889"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92090],"is_not":false,"summary":null,"term":"GO:0048210"}]},"cv_name":"biological_process","definition":"The joining of the lipid bilayer membrane around a Golgi transport vesicle to the target lipid bilayer membrane.","definition_xrefs":["PMID:10219233","ISBN:0716731363","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle fusion","termid":"GO:0006906"},{"relation_name":"part_of","term_name":"Golgi vesicle transport","termid":"GO:0048193"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03889":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0061024","GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"Golgi vesicle fusion to target membrane","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Golgi-derived vesicle fusion to target membrane","type":"exact"},{"name":"dictyosome vesicle fusion to target membrane","type":"narrow"}],"termid":"GO:0048210","terms_by_termid":{"GO:0048210":null}}


id: PBO:0062746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily J member 1 pseudogene","termid":"PBO:0062746"}


id: GO:0070704
data:
  {"annotated_genes":["SJAG_00717","SJAG_03509","SJAG_03249"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87628],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000249"},{"annotations":[103659,85816],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000248"},{"annotations":[85817,103660],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0050046"}]},"cv_name":"molecular_function","definition":"Catalysis of the introduction of a double bond into a sterol molecule.","definition_xrefs":["GOC:vw","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00717":null,"SJAG_03249":null,"SJAG_03509":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"sterol desaturase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0070704","terms_by_termid":{"GO:0000248":null,"GO:0000249":null,"GO:0050046":null}}


id: GO:0019983
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to interleukin-9.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth factor binding","termid":"GO:0019838"},{"relation_name":"is_a","term_name":"cytokine binding","termid":"GO:0019955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"interleukin-9 binding","synonyms":[{"name":"IL-9 binding","type":"exact"}],"termid":"GO:0019983"}


id: PR:O13979
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug105 gene.","definition_xrefs":["UniProtKB:O13979","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 105 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25H1.04","synonyms":[{"name":"Spom972h-mug105","type":"exact"}],"termid":"PR:O13979"}


id: GO:1903097
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the rate, frequency or extent of the formation of nucleosomes containing the histone H3 variant CENP-A to form centromeric chromatin. This specialised chromatin occurs at centromeric region in point centromeres, and the central core in modular centromeres.","definition_xrefs":["PMID:24710126","GOC:TermGenie","GO_REF:0000058"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of CENP-A containing nucleosome assembly (obsolete GO:1903097)","synonyms":[{"name":"regulation of CENP-A deposition","type":"related"},{"name":"regulation of CENP-A loading","type":"related"},{"name":"regulation of CenH3-containing nucleosome assembly at centromere","type":"related"},{"name":"regulation of DNA replication-independent nucleosome assembly at centromere","type":"exact"},{"name":"regulation of centromere specific nucleosome exchange","type":"related"},{"name":"regulation of centromere-specific histone exchange","type":"exact"},{"name":"regulation of centromere-specific nucleosome assembly","type":"exact"},{"name":"regulation of centromeric DNA replication-independent nucleosome assembly","type":"exact"}],"termid":"GO:1903097"}


id: SO:0000301
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A feature where recombination has occurred for the purpose of generating a diversity in the immune system.","direct_ancestors":[{"relation_name":"is_a","term_name":"recombination_feature_of_rearranged_gene","termid":"SO:0000300"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vertebrate_immune_system_gene_recombination_feature","synonyms":[{"name":"vertebrate immune system gene recombination feature","type":"exact"}],"termid":"SO:0000301"}


id: PBO:0075155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide C pseudogene 11","termid":"PBO:0075155"}


id: GO:0052646
data:
  {"annotated_genes":["SJAG_01012","SJAG_00409"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90115,102617],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046168"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving alditol phosphates, any phosphorylated polyhydric alcohol derived from the acyclic form of a monosaccharide by reduction of its aldehyde or keto group to an alcoholic group.","definition_xrefs":["PMID:30240188"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphate-containing compound metabolic process","termid":"GO:0006796"},{"relation_name":"is_a","term_name":"organophosphate metabolic process","termid":"GO:0019637"},{"relation_name":"is_a","term_name":"carbohydrate derivative metabolic process","termid":"GO:1901135"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00409":null,"SJAG_01012":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"alditol phosphate metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"alditol phosphate metabolism","type":"exact"}],"termid":"GO:0052646","terms_by_termid":{"GO:0046168":null}}


id: PBO:0005702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shuttle craft like transcriptional regulator (predicted)","termid":"PBO:0005702"}


id: PBO:0012227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamine aminotransferase subunit (predicted)","termid":"PBO:0012227"}


id: PBO:0045686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein light chain LC8-type 1 pseudogene 6","termid":"PBO:0045686"}


id: GO:0032983
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. Kainate receptors are multimeric assemblies of GluK1-3 (also called GluR5-7), GluK4 (KA1) and GluK5 (KA2) subunits.","definition_xrefs":["PMID:18655795","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ionotropic glutamate receptor complex","termid":"GO:0008328"},{"relation_name":"is_a","term_name":"potassium channel complex","termid":"GO:0034705"},{"relation_name":"is_a","term_name":"sodium channel complex","termid":"GO:0034706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"kainate selective glutamate receptor complex","termid":"GO:0032983"}


id: PBO:0049740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemoglobin subunit delta","termid":"PBO:0049740"}


id: GO:0004958
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with prostaglandin F (PGF (2-alpha)) to initiate a change in cell activity.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prostaglandin receptor activity","termid":"GO:0004955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"prostaglandin F receptor activity","synonyms":[{"name":"PGF receptor activity","type":"related"},{"name":"PGF(2-alpha) receptor activity","type":"exact"}],"termid":"GO:0004958"}


id: PBO:0030773
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_hydroxyurea","termid":"PBO:0030773"}


id: FYPO:0000191
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which regulation of the establishment or maintenance of cell polarity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation phenotype during vegetative growth","termid":"FYPO:0001334"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal regulation of establishment or maintenance of cell polarity","synonyms":[{"name":"abnormal regulation of establishment or maintenance of cell polarity during mitotic cell cycle","type":"related"},{"name":"abnormal regulation of establishment or maintenance of cell polarity during vegetative growth","type":"exact"}],"termid":"FYPO:0000191"}


id: GO:0102347
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: icosanoyl-CoA(4-) + NADP(3-) = trans-2-icosenoyl-CoA(4-) + NADPH(4-) + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete trans-arachidon-2-enoyl-CoA reductase activity (obsolete GO:0102347)","termid":"GO:0102347"}


id: PBO:0052274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine demethylase 5B","termid":"PBO:0052274"}


id: PBO:0027702
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_nucleolar_chromatin_organization","termid":"PBO:0027702"}


id: PBO:0042620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDV3 pseudogene 1","termid":"PBO:0042620"}


id: PBO:0039387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amylase alpha 2A","termid":"PBO:0039387"}


id: PBO:0003513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetraspan protein Dni2 (predicted)","termid":"PBO:0003513"}


id: GO:0047872
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: palmitoyl-CoA + dolichol = CoA + dolichyl palmitate.","definition_xrefs":["EC:2.3.1.123","MetaCyc:DOLICHOL-O-ACYLTRANSFERASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016746","GO:0003824"],"is_obsolete":false,"name":"dolichol O-acyltransferase activity","secondary_identifiers":["RHEA:16685"],"synonyms":[{"name":"acyl-CoA:dolichol acyltransferase activity","type":"related"},{"name":"palmitoyl-CoA:dolichol O-palmitoyltransferase activity","type":"related"}],"termid":"GO:0047872"}


id: GO:0004129
data:
  {"annotated_genes":["SJAG_MIT04","SJAG_MIT13","SJAG_03337","SJAG_05629","SJAG_01077","SJAG_01190","SJAG_01355","SJAG_MIT20","SJAG_02504","SJAG_07007","SJAG_00976"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84370,85378,88085,104412,110358,110785,111580,112952,115128,115149,115150,115174,115175],"is_not":false,"summary":null,"term":"GO:0004129"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.","definition_xrefs":["RHEA:11436"],"direct_ancestors":[{"relation_name":"is_a","term_name":"electron transfer activity","termid":"GO:0009055"},{"relation_name":"is_a","term_name":"proton transmembrane transporter activity","termid":"GO:0015078"},{"relation_name":"is_a","term_name":"oxidoreduction-driven active transmembrane transporter activity","termid":"GO:0015453"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a heme group of donors","termid":"GO:0016675"},{"relation_name":"is_a","term_name":"active monoatomic ion transmembrane transporter activity","termid":"GO:0022853"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00976":null,"SJAG_01077":null,"SJAG_01190":null,"SJAG_01355":null,"SJAG_02504":null,"SJAG_03337":null,"SJAG_05629":null,"SJAG_07007":null,"SJAG_MIT04":null,"SJAG_MIT13":null,"SJAG_MIT20":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"cytochrome-c oxidase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-163214","EC:7.1.1.9","MetaCyc:CYTOCHROME-C-OXIDASE-RXN"],"synonyms":[{"name":"Warburg's respiratory enzyme activity","type":"related"},{"name":"aa3-type cytochrome c oxidase","type":"narrow"},{"name":"ba3-type cytochrome c oxidase","type":"narrow"},{"name":"caa3-type cytochrome c oxidase","type":"narrow"},{"name":"cbb3-type cytochrome c oxidase","type":"narrow"},{"name":"complex IV (mitochondrial electron transport) activity","type":"related"},{"name":"cytochrome a3 activity","type":"narrow"},{"name":"cytochrome aa3 activity","type":"narrow"},{"name":"cytochrome c oxidase activity","type":"exact"},{"name":"cytochrome oxidase activity","type":"related"},{"name":"indophenol oxidase","type":"narrow"},{"name":"indophenolase","type":"narrow"}],"termid":"GO:0004129","terms_by_termid":{"GO:0004129":null}}


id: PBO:0031118
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_processing","termid":"PBO:0031118"}


id: GO:0003809
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the preferential cleavage of Arg-Gly; activates fibrinogen to fibrin and releases fibrinopeptide A and B.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete thrombin activity (obsolete GO:0003809)","synonyms":[{"name":"E thrombin","type":"related"},{"name":"activated blood-coagulation factor II","type":"related"},{"name":"beta-thrombin","type":"related"},{"name":"blood-coagulation factor IIa","type":"related"},{"name":"factor IIa","type":"related"},{"name":"fibrinogenase activity","type":"related"},{"name":"gamma-thrombin","type":"related"},{"name":"thrombase activity","type":"related"},{"name":"thrombin activity","type":"exact"},{"name":"thrombin-C","type":"related"},{"name":"thrombofort","type":"related"},{"name":"topical","type":"related"},{"name":"tropostasin","type":"related"}],"termid":"GO:0003809"}


id: PBO:0062342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily K member 1 pseudogene","termid":"PBO:0062342"}


id: MOD:00967
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links two L-lysine residues to form syndesine, hydroxylysinohydroxynorleucine.","definition_xrefs":["PubMed:75151974","DeltaMass:35"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked L-lysine residue","termid":"MOD:02051"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndesine","synonyms":[{"name":"hydroxylysinohydroxynorleucine","type":"exact"}],"termid":"MOD:00967"}


id: PBO:0060307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYL12B pseudogene 2","termid":"PBO:0060307"}


id: GO:0010658
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a striated muscle cell and result in its death. Striated muscle cells make up striated muscle fibers which are divided by transverse bands into striations.","definition_xrefs":["GOC:tb","GOC:mtg_apoptosis","GOC:dph","CL:0000737"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscle cell apoptotic process","termid":"GO:0010657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"striated muscle cell apoptotic process","synonyms":[{"name":"striated muscle cell apoptosis","type":"narrow"}],"termid":"GO:0010658"}


id: PBO:0028182
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_mercury","termid":"PBO:0028182"}


id: PBO:0084715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial inner membrane m-AAA protease component; mediates degradation of misfolded or unassembled proteins; also required for correct assembly of mitochondrial enzyme complexes; involved in cytoplasmic mRNA translation and aging; expression of human homolog AFG3L2 can complement yeast yta12 afg3 double mutant","termid":"PBO:0084715"}


id: PBO:0084858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosomal protein of the large subunit; required for mitochondrial genome integrity, respiratory growth, and mitochondrial redox homeostasis, partially overlaps verified gene YPR099C","termid":"PBO:0084858"}


id: GO:0051349
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of lyase activity, the catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of catalytic activity","termid":"GO:0043085"},{"relation_name":"is_a","term_name":"regulation of lyase activity","termid":"GO:0051339"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of lyase activity","synonyms":[{"name":"activation of lyase activity","type":"narrow"},{"name":"lyase activator","type":"exact"},{"name":"stimulation of lyase activity","type":"narrow"},{"name":"up regulation of lyase activity","type":"exact"},{"name":"up-regulation of lyase activity","type":"exact"},{"name":"upregulation of lyase activity","type":"exact"}],"termid":"GO:0051349"}


id: PBO:0057650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1244-3","termid":"PBO:0057650"}


id: PBO:0112513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal protein, UPF0768 family","termid":"PBO:0112513"}


id: FYPO:0002586
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial tRNA 3'-end processing is normal (i.e. indistinguishable from wild type). In mitochondrial tRNA 3'-end processing, the 3' end of a mitochondrial pre-tRNA molecule is converted to that of a mature mitochondrial tRNA.","definition_xrefs":["PomBase:mah","GO:0006396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA processing","termid":"FYPO:0001980"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal mitochondrial tRNA 3'-end processing","synonyms":[{"name":"normal mitochondrial tRNA 3'-end processing during mitotic cell cycle","type":"related"},{"name":"normal mitochondrial tRNA 3'-end processing during vegetative growth","type":"exact"},{"name":"normal mitochondrial transfer RNA 3'-end processing","type":"exact"}],"termid":"FYPO:0002586"}


id: PBO:0071105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 107","termid":"PBO:0071105"}


id: GO:0032763
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of mast cell cytokine production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production involved in immune response","termid":"GO:0002718"},{"relation_name":"regulates","term_name":"mast cell cytokine production","termid":"GO:0032762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of mast cell cytokine production","termid":"GO:0032763"}


id: SO:0005853
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that can be substituted for a related gene at a different site in the genome.","definition_xrefs":["SGD:se"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene","termid":"SO:0000704"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_cassette","secondary_identifiers":["http://en.wikipedia.org/wiki/Gene_cassette"],"synonyms":[{"name":"gene cassette","type":"exact"}],"termid":"SO:0005853"}


id: PBO:0039453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 1","termid":"PBO:0039453"}


id: PBO:0073781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 5 member 3","termid":"PBO:0073781"}


id: PBO:0011964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"simialr to S. pombe SPAC186.09","termid":"PBO:0011964"}


id: FYECO:0000323
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Cells were cold shocked followed by recovery at a temperature range higher than normal for standard pombe growth.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping sequential growth conditions","termid":"FYECO:0000094"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cold shock and recovery at high temperature","termid":"FYECO:0000323"}


id: GO:0035246
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of a methyl group onto a nitrogen atom of an arginine residue in a protein.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-arginine methylation","termid":"GO:0018216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-arginine N-methylation","termid":"GO:0035246"}


id: PBO:0053589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 615","termid":"PBO:0053589"}


id: GO:0039707
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The aggregation, arrangement and bonding together of a set of components by a virus to form a pore complex in a membrane of a host organism.","definition_xrefs":["PMID:12972148","GOC:jl","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete virus-mediated pore formation in host cell membrane (obsolete GO:0039707)","synonyms":[{"name":"pore formation by virus in membrane of host cell","type":"exact"},{"name":"pore formation in membrane of host cell by virus","type":"exact"},{"name":"viroporin","type":"related"}],"termid":"GO:0039707"}


id: PBO:0017512
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tuberous Sclerosis","termid":"PBO:0017512"}


id: PBO:0034264
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_role","termid":"PBO:0034264"}


id: GO:0140237
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Translation that occurs at the presynapse, and that modulates chemical synaptic transmission.","definition_xrefs":["PMID:27321671"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translation at presynapse","termid":"GO:0140236"},{"relation_name":"regulates","term_name":"chemical synaptic transmission","termid":"GO:0007268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"translation at presynapse, modulating chemical synaptic transmission","termid":"GO:0140237"}


id: GO:1990233
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex capable of catalyzing the transfer of a phosphate group from one position to another within a single molecule.","definition_xrefs":["PMID:16540464","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005829"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005829","GO:0005737"],"is_obsolete":false,"name":"intramolecular phosphotransferase complex","termid":"GO:1990233"}


id: PBO:0090436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNase MRP subunit Rmp1/NEPRO","termid":"PBO:0090436"}


id: PBO:0039674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adaptor related protein complex 4 subunit sigma 1","termid":"PBO:0039674"}


id: PBO:0061716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NUTM2A antisense RNA 1","termid":"PBO:0061716"}


id: PBO:0003635
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S. cerevisiae YOR212W is not functional ortholog","termid":"PBO:0003635"}


id: GO:0051202
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving phytochromobilin, the linear tetrapyrrole chromophore required for plant phytochrome photoactivity.","definition_xrefs":["PMID:11500553"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tetrapyrrole metabolic process","termid":"GO:0033013"},{"relation_name":"is_a","term_name":"dicarboxylic acid metabolic process","termid":"GO:0043648"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0008150","GO:0033013","GO:0044281"],"is_obsolete":false,"name":"phytochromobilin metabolic process","synonyms":[{"name":"phytochromobilin metabolism","type":"exact"}],"termid":"GO:0051202"}


id: PBO:0026783
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_DNA_synthesis_involved_in_mitotic_DNA_replication","termid":"PBO:0026783"}


id: GO:0060462
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The biological process whose specific outcome is the progression of a lung lobe from an initial condition to its mature state. This process begins with the formation of a lung lobe by branching morphogenesis and ends with the mature structure. A lung lobe is one of the rounded projections that compose the lung.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"lung development","termid":"GO:0030324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lung lobe development","termid":"GO:0060462"}


id: PBO:0047461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fc receptor like 2","termid":"PBO:0047461"}


id: GO:0071940
data:
  {"annotated_genes":["SJAG_04238","SJAG_00974","SJAG_03013","SJAG_04868","SJAG_01321"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84383,113892,86399,84875,87902],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030476"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a fungal-type cell wall.","definition_xrefs":["PMID:19646873","GOC:vw","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fungal-type cell wall organization","termid":"GO:0031505"},{"relation_name":"is_a","term_name":"cell wall assembly","termid":"GO:0070726"},{"relation_name":"part_of","term_name":"fungal-type cell wall biogenesis","termid":"GO:0009272"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00974":null,"SJAG_01321":null,"SJAG_03013":null,"SJAG_04238":null,"SJAG_04868":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0071554"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0071554","GO:0044085"],"is_obsolete":false,"name":"fungal-type cell wall assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"fungal-type cell wall formation","type":"related"}],"termid":"GO:0071940","terms_by_termid":{"GO:0030476":null}}


id: PBO:0062347
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily K member 6","termid":"PBO:0062347"}


id: SO:0002100
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A pseudogenic constant region of an immunoglobulin gene which closely resembles a known functional Imunoglobulin constant gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html","IGMT:http://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin_pseudogene","termid":"SO:0002098"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IG_C_pseudogene","synonyms":[{"name":"IG C pseudogene","type":"exact"}],"termid":"SO:0002100"}


id: PBO:0082512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of the ER membrane GPI transamidase complex; involved in adding glycosylphosphatidylinositol (GPI) anchors to newly synthesized proteins; luminally-oriented type I integral membrane glycoprotein of the ER; human PIGK protein is a functional homolog","termid":"PBO:0082512"}


id: PBO:0079206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor suppressing subtransferable candidate 2 (pseudogene)","termid":"PBO:0079206"}


id: PBO:0062756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily N member 1","termid":"PBO:0062756"}


id: MOD:00988
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a hydrogen atom of an L-tyrosine residue with a bromine atom.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brominated residue","termid":"MOD:00754"},{"relation_name":"is_a","term_name":"halogenated tyrosine","termid":"MOD:00985"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brominated tyrosine","synonyms":[{"name":"BrTyr","type":"exact"}],"termid":"MOD:00988"}


id: GO:0001098
data:
  {"annotated_genes":["SJAG_01610","SJAG_00139","SJAG_01151","SJAG_01707","SJAG_00483","SJAG_04933","SJAG_04353","SJAG_02691","SJAG_03118","SJAG_00448","SJAG_00095","SJAG_00159"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[64369],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0099122"},{"annotations":[71514,76912],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990269"},{"annotations":[71234,75199,77585,77569,70004],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000993"},{"annotations":[75473,77304],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001139"},{"annotations":[78037],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001096"},{"annotations":[75284],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001097"}]},"cv_name":"molecular_function","definition":"Binding to a component of the basal transcription machinery which is composed of the RNA polymerase core enzyme and the basal transcription factor(s), the minimal set of factors required for formation of the preinitiation complex (PIC) by the RNA polymerase.","definition_xrefs":["GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00095":null,"SJAG_00139":null,"SJAG_00159":null,"SJAG_00448":null,"SJAG_00483":null,"SJAG_01151":null,"SJAG_01610":null,"SJAG_01707":null,"SJAG_02691":null,"SJAG_03118":null,"SJAG_04353":null,"SJAG_04933":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"basal transcription machinery binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"termid":"GO:0001098","terms_by_termid":{"GO:0000993":null,"GO:0001096":null,"GO:0001097":null,"GO:0001139":null,"GO:0099122":null,"GO:1990269":null}}


id: GO:0000115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A cell cycle process that regulates transcription such that the target genes are transcribed as part of the S phase of the mitotic cell cycle.","definition_xrefs":["GOC:tb","GOC:dph","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription involved in S phase of mitotic cell cycle (obsolete GO:0000115)","synonyms":[{"name":"S-phase-specific transcription in mitotic cell cycle","type":"related"},{"name":"S-specific transcription in mitotic cell cycle","type":"exact"},{"name":"regulation of transcription from RNA polymerase II promoter during S-phase of mitotic cell cycle","type":"related"},{"name":"regulation of transcription involved in S phase of mitotic cell cycle","type":"exact"},{"name":"regulation of transcription involved in S-phase of mitotic cell cycle","type":"exact"}],"termid":"GO:0000115"}


id: GO:1990236
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of the proteasome core complex (AKA core particle (CP)) from the cytoplasm into the nucleus.","definition_xrefs":["GOC:rb","GOC:dos","PMID:23982732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex localization","termid":"GO:0031503"},{"relation_name":"is_a","term_name":"import into nucleus","termid":"GO:0051170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0006913","GO:0051179"],"is_obsolete":false,"name":"proteasome core complex import into nucleus","termid":"GO:1990236"}


id: GO:0016281
data:
  {"annotated_genes":["SJAG_04772","SJAG_01954","SJAG_03223","SJAG_00507"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[83692,86058,86509,100877],"is_not":false,"summary":null,"term":"GO:0016281"}]},"cv_name":"cellular_component","definition":"The eukaryotic translation initiation factor 4F complex is composed of eIF4E, eIF4A and eIF4G; it is involved in the recognition of the mRNA cap, ATP-dependent unwinding of the 5'-terminal secondary structure and recruitment of the mRNA to the ribosome.","definition_xrefs":["PMID:8449919","PMID:32883864","GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA cap binding complex","termid":"GO:0034518"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00507":null,"SJAG_01954":null,"SJAG_03223":null,"SJAG_04772":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005737","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"eukaryotic translation initiation factor 4F complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cytoplasmic cap-binding complex","type":"exact"},{"name":"eIF-4F","type":"exact"},{"name":"eukaryotic translation initiation factor 4 complex","type":"broad"}],"termid":"GO:0016281","terms_by_termid":{"GO:0016281":null}}


id: GO:0098985
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A neuron to neuron synapse with a postsynaptic density, that uses glutamate as a neurotransmitter and whose activity results in excitatory postsynaptic potentials.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asymmetric synapse","termid":"GO:0032279"},{"relation_name":"is_a","term_name":"excitatory synapse","termid":"GO:0060076"},{"relation_name":"is_a","term_name":"glutamatergic synapse","termid":"GO:0098978"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"asymmetric, glutamatergic, excitatory synapse","termid":"GO:0098985"}


id: PBO:0001609
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.1.107","termid":"PBO:0001609"}


id: GO:0051064
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: dTTP + thioredoxin disulfide + H2O = TTP + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin.","definition_xrefs":["MetaCyc:1.17.4.2-RXN"],"gene_count":0,"genotype_count":0,"name":"obsolete TTP reductase activity (obsolete GO:0051064)","synonyms":[{"name":"TTP reduction","type":"related"}],"termid":"GO:0051064"}


id: GO:0019859
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving thymine, 5-methyluracil, one of the two major pyrimidine bases present (as thymidine) in DNA but not found in RNA other than (as ribothymidine) in transfer RNA, where it is a minor base.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleobase metabolic process","termid":"GO:0006206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"thymine metabolic process","synonyms":[{"name":"thymine metabolism","type":"exact"}],"termid":"GO:0019859"}


id: PBO:0091793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces pombe specific protein, phosphate responsive","termid":"PBO:0091793"}


id: SO:0001318
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Epoxyqueuosine is a modified 7-deazoguanosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"seven_deazaguanosine","termid":"SO:0001316"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epoxyqueuosine","secondary_identifiers":["RNAMOD:044"],"synonyms":[{"name":"eQ","type":"exact"}],"termid":"SO:0001318"}


id: PBO:0038843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase with thrombospondin type 1 motif 12","termid":"PBO:0038843"}


id: PBO:0043597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type XXVI alpha 1 chain","termid":"PBO:0043597"}


id: PBO:0083869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein containing five copies of the WD40 motif; controls cell cycle function, sulfur metabolism, and methionine biosynthesis as part of the ubiquitin ligase complex; interacts with and regulates Met4p, localizes within the nucleus; dissociation of Met30p from SCF complex in response to cadmium stress is regulated by Cdc48p","termid":"PBO:0083869"}


id: PBO:0091226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-coding RNA, LTR proximal","termid":"PBO:0091226"}


id: GO:0008066
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with glutamate and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:ai","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"glutamate receptor activity","termid":"GO:0008066"}


id: GO:0060182
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with the peptide apelin to initiate a change in cell activity.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled peptide receptor activity","termid":"GO:0008528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"apelin receptor activity","termid":"GO:0060182"}


id: GO:0072682
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of an eosinophil from the blood vessels into the surrounding tissue.","definition_xrefs":["GOC:mah","CL:0000771","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular extravasation","termid":"GO:0045123"},{"relation_name":"is_a","term_name":"eosinophil migration","termid":"GO:0072677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"eosinophil extravasation","termid":"GO:0072682"}


id: FYPO:0006588
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the plasma membrane at the tip of a shmoo, or mating projection, is decreased, and some of the protein is present in the endoplasmic reticulum instead.","definition_xrefs":["PMID:29134248","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to shmoo tip membrane","termid":"FYPO:0006587"},{"relation_name":"is_a","term_name":"protein mislocalized to endoplasmic reticulum","termid":"FYPO:0006590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to shmoo tip membrane, with protein mislocalized to endoplasmic reticulum","synonyms":[{"name":"decreased protein localisation to mating projection tip membrane, with protein mislocalised to endoplasmic reticulum","type":"exact"},{"name":"decreased protein localization to mating projection tip membrane, with protein mislocalized to endoplasmic reticulum","type":"exact"},{"name":"decreased protein localization to plasma membrane at shmoo tip, with protein mislocalized to endoplasmic reticulum","type":"exact"},{"name":"decreased protein localization to shmoo membrane fusion domain, with protein mislocalized to endoplasmic reticulum","type":"exact"},{"name":"decreased protein localization to shmoo projection membrane, with protein mislocalized to endoplasmic reticulum","type":"related"},{"name":"decreased protein localization to shmoo tip membrane, with protein mislocalized to ER","type":"exact"},{"name":"reduced protein localization to shmoo tip membrane, with protein mislocalized to endoplasmic reticulum","type":"related"}],"termid":"FYPO:0006588"}


id: GO:0018723
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-phenanthrol + X-SO3(-) = HX + 3-phenanthrylsulfate.","definition_xrefs":["UM-BBD_reactionID:r0561"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenanthrol sulfotransferase activity","termid":"GO:0019111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016782"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016782"],"is_obsolete":false,"name":"3-phenanthrol sulfotransferase activity","synonyms":[{"name":"3-phenanthrol sulphotransferase activity","type":"exact"}],"termid":"GO:0018723"}


id: FYECO:0000045
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which pentadecanoic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ fatty acid","termid":"FYECO:0000042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ pentadecanoic acid","termid":"FYECO:0000045"}


id: GO:0102472
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: eriodictyol + NADPH + O2 + 2 H+ = 2-hydroxyeriodictyol + NADP + H2O.","definition_xrefs":["GOC:pz","EC:1.14.13.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"eriodictyol 2-hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-14077","RHEA:57596"],"termid":"GO:0102472"}


id: RO:0002454
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"symbiotically_interacts_with","termid":"RO:0002440"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_host","termid":"RO:0002454"}


id: GO:0019883
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses antigen (peptide or lipid) of endogenous origin on its cell surface in association with an MHC protein complex.","definition_xrefs":["PMID:15771591","PMID:15928678","GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation","termid":"GO:0019882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of endogenous antigen","synonyms":[{"name":"antigen presentation, endogenous antigen","type":"exact"}],"termid":"GO:0019883"}


id: PBO:0090725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxyuridine 5'-triphosphate nucleotidohydrolase","termid":"PBO:0090725"}


id: PBO:0065531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patched domain containing 3 pseudogene 3","termid":"PBO:0065531"}


id: GO:0005416
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: amino acid(out) + cation(out) = amino acid(in) + cation(in).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane transporter activity","termid":"GO:0015171"},{"relation_name":"is_a","term_name":"solute:monoatomic cation symporter activity","termid":"GO:0015294"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"amino acid:monoatomic cation symporter activity","synonyms":[{"name":"amino acid:cation symporter activity","type":"broad"},{"name":"cation/amino acid symporter activity","type":"exact"},{"name":"cation:amino acid symporter activity","type":"exact"}],"termid":"GO:0005416"}


id: PBO:0080658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WAP four-disulfide core domain 2","termid":"PBO:0080658"}


id: GO:0000759
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The change in form (cell shape and size) that occurs during sexual reproduction in order to facilitate direct contact between the compatible mating types in organisms that undergo conjugation without cellular fusion.","definition_xrefs":["GOC:clt"],"gene_count":0,"genotype_count":0,"name":"obsolete cell morphogenesis involved in conjugation with mutual genetic exchange (obsolete GO:0000759)","synonyms":[{"name":"cellular morphogenesis involved in conjugation without cellular fusion","type":"exact"}],"termid":"GO:0000759"}


id: PBO:0059844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like","termid":"PBO:0059844"}


id: GO:0061867
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The mitotic spindle organization process by which a mitotic spindle becomes asymmetric either in position or structure.","definition_xrefs":["PMID:26659188"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic spindle organization","termid":"GO:0007052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0000226","GO:0007010","GO:0008150"],"is_obsolete":false,"name":"establishment of mitotic spindle asymmetry","termid":"GO:0061867"}


id: GO:0022873
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + maltose(out) = protein histidine + maltose phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maltose transmembrane transporter activity","termid":"GO:0005363"},{"relation_name":"is_a","term_name":"protein-N(PI)-phosphohistidine-sugar phosphotransferase activity","termid":"GO:0008982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"protein-N(PI)-phosphohistidine-maltose phosphotransferase system transporter activity","synonyms":[{"name":"maltose PTS transporter activity","type":"exact"}],"termid":"GO:0022873"}


id: PBO:0062989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"parkin coregulated like","termid":"PBO:0062989"}


id: GO:0060766
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of the androgen receptor signaling pathway.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of intracellular steroid hormone receptor signaling pathway","termid":"GO:0033144"},{"relation_name":"is_a","term_name":"regulation of androgen receptor signaling pathway","termid":"GO:0060765"},{"relation_name":"negatively_regulates","term_name":"androgen receptor signaling pathway","termid":"GO:0030521"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of androgen receptor signaling pathway","synonyms":[{"name":"negative regulation of androgen receptor signalling pathway","type":"exact"}],"termid":"GO:0060766"}


id: MOD:00230
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts two L-cysteine residues, two L-histidine residues and a two-iron two-sulfur cluster to bis-L-cysteinyl bis-L-histidino diiron disulfide.","definition_xrefs":["RESID:AA0225","PubMed:2765515","PubMed:9651245"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron-sulfur cluster containing modification","termid":"MOD:00739"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-cysteine residue","termid":"MOD:02067"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-histidine residue","termid":"MOD:02070"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bis-L-cysteinyl bis-L-histidino diiron disulfide","synonyms":[{"name":"METAL Iron-sulfur (2Fe-2S)","type":"exact"},{"name":"METAL Iron-sulfur (2Fe-2S); via pros nitrogen","type":"exact"},{"name":"Rieske iron-sulfur cofactor","type":"exact"},{"name":"bis-L-cysteinyl bis-L-histidino diiron disulfide","type":"exact"},{"name":"di-mu-sulfido(bis-S-cysteinyliron)(bis-N3'-histidinoiron)","type":"exact"}],"termid":"MOD:00230"}


id: PBO:0060169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microsomal triglyceride transfer protein","termid":"PBO:0060169"}


id: GO:0097023
data:
  {"annotated_genes":["SJAG_04242"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96188,110729],"is_not":false,"summary":null,"term":"GO:0097023"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-fructose-6-phosphate = dihydroxyacetone + D-glyceraldehyde-3-phosphate.","definition_xrefs":["GOC:imk","PMID:11120740","PMID:21290439"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04242":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"fructose 6-phosphate aldolase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:28002"],"termid":"GO:0097023","terms_by_termid":{"GO:0097023":null}}


id: PBO:0052087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch repeat and BTB domain containing 3","termid":"PBO:0052087"}


id: FYPO:0007318
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which stress granule assembly is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular component assembly","termid":"FYPO:0000336"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal stress granule assembly","synonyms":[{"name":"abnormal cytoplasmic stress granule assembly","type":"exact"},{"name":"abnormal stress granule formation","type":"exact"}],"termid":"FYPO:0007318"}


id: GO:0052473
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of the B-cell mediated immune response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation by organism of symbiont B-cell mediated immune response (obsolete GO:0052473)","synonyms":[{"name":"negative regulation by organism of symbiont B-cell mediated immune response","type":"exact"}],"termid":"GO:0052473"}


id: PBO:0088850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi protein, associated with COP vesicles (predicted), DUF5427","termid":"PBO:0088850"}


id: PBO:0072000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S7 pseudogene 2","termid":"PBO:0072000"}


id: PBO:0043544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type I alpha 1 chain","termid":"PBO:0043544"}


id: GO:0141198
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A protein ubiquitination process in which ubiquitin monomers are attached to a protein, and then ubiquitin polymers are formed by linkages between lysine residues at various positions of the ubiquitin monomers, forming branched linkages, such as K11/K48- or K11/K63-linked chains.","definition_xrefs":["PMID:29033132","PMID:29378950","PMID:31998699","PMID:37325469"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein polyubiquitination","termid":"GO:0000209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"protein branched polyubiquitination","termid":"GO:0141198"}


id: PR:P0CT71
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl802 gene.","definition_xrefs":["UniProtKB:P0CT71","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L2-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2F12.07c","synonyms":[{"name":"K37 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"K5 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"KD4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rpl802","type":"exact"}],"termid":"PR:P0CT71"}


id: GO:0045328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent linkage of heme to cytochrome P450 4A1 via hydroxyheme-L-glutamyl ester.","definition_xrefs":["RESID:AA0324","GOC:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-heme linkage","termid":"GO:0017003"},{"relation_name":"part_of","term_name":"cytochrome complex assembly","termid":"GO:0017004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"cytochrome P450 4A1-heme linkage","synonyms":[{"name":"cytochrome P450 4A1-haem linkage","type":"exact"}],"termid":"GO:0045328"}


id: GO:0075289
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a nonmotile, asexual spore is formed within a cell in certain algae and fungi (commonly in the Phycomycetes), the wall of aplanospore is distinct from that of the parent cell.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sporangiospore formation","termid":"GO:0034300"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"aplanospore formation","termid":"GO:0075289"}


id: FYPO:0002542
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of threonine residues N-terminal to proline residues (i.e. in Thr-Pro sequences) occurs to a lower extent than normal during a cellular response to hydrogen peroxide.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete decreased protein threonine phosphorylation at Thr-Pro site during cellular response to hydrogen peroxide (obsolete FYPO:0002542)","synonyms":[{"name":"decreased protein threonine phosphorylation at TP site during cellular response to hydrogen peroxide","type":"exact"},{"name":"decreased protein threonine phosphorylation at Thr-Pro site during cellular response to H2O2","type":"exact"},{"name":"decreased protein threonine phosphorylation at Thr-Pro site during cellular response to hydrogen peroxide during mitotic cell cycle","type":"related"},{"name":"decreased protein threonine phosphorylation at Thr-Pro site during cellular response to hydrogen peroxide during vegetative growth","type":"exact"},{"name":"decreased protein threonine phosphorylation at threonine-proline site during cellular response to hydrogen peroxide","type":"exact"},{"name":"reduced protein threonine phosphorylation at Thr-Pro site during cellular response to hydrogen peroxide","type":"exact"}],"termid":"FYPO:0002542"}


id: PBO:0068850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 88, pseudogene","termid":"PBO:0068850"}


id: PBO:0042647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain Y-linked 22 pseudogene","termid":"PBO:0042647"}


id: SO:0001630
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intron.","direct_ancestors":[{"relation_name":"is_a","term_name":"splicing_variant","termid":"SO:0001568"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splice_region_variant","secondary_identifiers":["http://snpeff.sourceforge.net/SnpEff_manual.html","http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences"],"synonyms":[{"name":"ANNOVAR:splicing","type":"related"},{"name":"Jannovar:splice_region_variant","type":"exact"},{"name":"VAAST:splice_region_variant","type":"exact"},{"name":"VEP:splice_region_variant","type":"exact"},{"name":"snpEff:SPLICE_SITE_BRANCH","type":"related"},{"name":"snpEff:SPLICE_SITE_BRANCH_U12","type":"related"},{"name":"snpEff:SPLICE_SITE_REGION","type":"exact"},{"name":"splice region variant","type":"exact"}],"termid":"SO:0001630"}


id: GO:0097637
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the autophagosome membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["GOC:autophagy","GOC:mf"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of autophagosome membrane (obsolete GO:0097637)","synonyms":[{"name":"autophagic vacuole integral membrane protein","type":"related"},{"name":"integral component of autophagic vacuole membrane","type":"exact"},{"name":"integral to autophagic vacuole membrane","type":"narrow"}],"termid":"GO:0097637"}


id: SO:0002015
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that causes the reduction of a the 3' UTR with regard to the reference sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3_prime_UTR_variant","termid":"SO:0001624"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3_prime_UTR_truncation","secondary_identifiers":["http://snpeff.sourceforge.net/SnpEff_manual.html"],"synonyms":[{"name":"3 prime UTR truncation","type":"exact"},{"name":"Jannovar:3_prime_utr_truncation","type":"exact"},{"name":"snpEff:UTR_3_DELETED","type":"exact"}],"termid":"SO:0002015"}


id: GO:0045549
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: a 9-cis-epoxycarotenoid + O2 = 2-cis,4-trans-xanthoxin + a 12'-apo-carotenal; 9-cis-violaxanthin + O2 = 2-cis,4-trans-xanthoxin + (3S,5R,6S)-5,6-epoxy-3-hydroxy-5,6-dihydro-12'-apo-beta-caroten-12'-al; and 9'-cis-neoxanthin + O2 = 2-cis,4-trans-xanthoxin + (3S,5R,6R)-5,6-dihydroxy-6,7-didehydro-5,6-dihydro-12'-apo-beta-caroten-12'-al.","definition_xrefs":["EC:1.13.11.51"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carotenoid dioxygenase activity","termid":"GO:0010436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"9-cis-epoxycarotenoid dioxygenase activity","synonyms":[{"name":"9-cis-epoxycarotenoid 11,12-dioxygenase activity","type":"related"},{"name":"AtNCED3","type":"related"},{"name":"NCED","type":"related"},{"name":"PvNCED1","type":"related"},{"name":"VP14","type":"related"},{"name":"neoxanthin cleavage enzyme","type":"related"},{"name":"nine-cis-epoxycarotenoid dioxygenase activity","type":"related"}],"termid":"GO:0045549"}


id: GO:0009700
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of indole phytoalexins, any indole compound produced by plants as part of their defense response.","definition_xrefs":["GOC:sm","ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"indole-containing compound biosynthetic process","termid":"GO:0042435"},{"relation_name":"is_a","term_name":"indole phytoalexin metabolic process","termid":"GO:0046217"},{"relation_name":"is_a","term_name":"phytoalexin biosynthetic process","termid":"GO:0052315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"indole phytoalexin biosynthetic process","synonyms":[{"name":"indole phytoalexin anabolism","type":"exact"},{"name":"indole phytoalexin biosynthesis","type":"exact"},{"name":"indole phytoalexin formation","type":"exact"},{"name":"indole phytoalexin synthesis","type":"exact"}],"termid":"GO:0009700"}


id: GO:0035281
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Transport of pre-microRNAs (pre-miRNAs) from the nucleus to the cytoplasm. Pre-miRNAs are a ~60-70 nucleotide stem loop intermediate in miRNA production, produced by the nuclear cleavage of a primary miRNA (pri-mRNA) transcript. Pre-miRNAs are transported from the nucleus to the cytoplasm where further cleavage occurs to produce a mature miRNA product.","definition_xrefs":["GOC:sl","PMID:14744438"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA export from nucleus","termid":"GO:0006405"},{"relation_name":"part_of","term_name":"miRNA-mediated post-transcriptional gene silencing","termid":"GO:0035195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006913","GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"pre-miRNA export from nucleus","synonyms":[{"name":"pre-microRNA export from cell nucleus","type":"exact"},{"name":"pre-microRNA export from nucleus","type":"related"},{"name":"pre-microRNA export out of nucleus","type":"exact"},{"name":"pre-microRNA transport from nucleus to cytoplasm","type":"exact"},{"name":"pre-microRNA-nucleus export","type":"exact"}],"termid":"GO:0035281"}


id: PBO:0016101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAD synthetase Nad1 (predicted)","termid":"PBO:0016101"}


id: PBO:0060637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NCMAP divergent transcript","termid":"PBO:0060637"}


id: PBO:0058443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5008","termid":"PBO:0058443"}


id: PBO:0043619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COMM domain containing 8","termid":"PBO:0043619"}


id: GO:0010739
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of protein kinase A signaling. PKA signaling is the series of reactions, mediated by the intracellular serine/threonine kinase protein kinase A, which occurs as a result of a single trigger reaction or compound.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein kinase A signaling","termid":"GO:0010738"},{"relation_name":"is_a","term_name":"positive regulation of intracellular signal transduction","termid":"GO:1902533"},{"relation_name":"positively_regulates","term_name":"protein kinase A signaling","termid":"GO:0010737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of protein kinase A signaling","synonyms":[{"name":"positive regulation of PKA signaling cascade","type":"related"},{"name":"positive regulation of protein kinase A signaling cascade","type":"related"},{"name":"positive regulation of protein kinase A signalling cascade","type":"related"}],"termid":"GO:0010739"}


id: PBO:0086905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative ubiquitin-specific protease; concentrates at the bud neck; UBP5 has a paralog, DOA4, that arose from the whole genome duplication","termid":"PBO:0086905"}


id: PBO:0083823
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential subunit of the Dam1 complex (aka DASH complex); cooperates with Dam1p and Pse1p to connect the DASH complex with microtubules (MT); couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; is transferred to the kinetochore prior to mitosis","termid":"PBO:0083823"}


id: GO:0060097
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly, arrangement, or disassembly of cytoskeletal structures that is involved in the internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeleton organization","termid":"GO:0007010"},{"relation_name":"part_of","term_name":"phagocytosis, engulfment","termid":"GO:0006911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007010","GO:0061024","GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"cytoskeletal rearrangement involved in phagocytosis, engulfment","termid":"GO:0060097"}


id: GO:0050191
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-phospho-D-glycerate + GTP = 3-phospho-D-glyceroyl phosphate + GDP + H+.","definition_xrefs":["EC:2.7.2.10","RHEA:23332"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, carboxyl group as acceptor","termid":"GO:0016774"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016301"],"is_obsolete":false,"name":"phosphoglycerate kinase (GTP) activity","secondary_identifiers":["KEGG_REACTION:R01517","MetaCyc:PHOSPHOGLYCERATE-KINASE-GTP-RXN"],"synonyms":[{"name":"GTP:3-phospho-D-glycerate 1-phosphotransferase activity","type":"related"}],"termid":"GO:0050191"}


id: PBO:0047345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fructose-bisphosphatase 2 pseudogene 1","termid":"PBO:0047345"}


id: GO:0007318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a protein is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization","termid":"GO:0008104"},{"relation_name":"part_of","term_name":"pole plasm assembly","termid":"GO:0007315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"pole plasm protein localization","secondary_identifiers":["GO:0048115"],"synonyms":[{"name":"establishment and maintenance of pole plasm protein localization","type":"exact"},{"name":"oocyte pole plasm protein localization","type":"exact"},{"name":"pole plasm protein localisation","type":"exact"}],"termid":"GO:0007318"}


id: PBO:0061959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily A member 15 pseudogene","termid":"PBO:0061959"}


id: GO:1903207
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of hydrogen peroxide-induced neuron death.","definition_xrefs":["GO_REF:0000058","GOC:bf","GOC:TermGenie","GOC:PARL"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of hydrogen peroxide-induced neuron death (obsolete GO:1903207)","synonyms":[{"name":"regulation of neuron death in response to H2O2","type":"exact"},{"name":"regulation of neuron death in response to hydrogen peroxide","type":"exact"},{"name":"regulation of neuronal cell death in response to hydrogen peroxide","type":"exact"}],"termid":"GO:1903207"}


id: GO:1904512
data:
  {"annotated_genes":["SJAG_03048","SJAG_00364","SJAG_03720","SJAG_03438"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102743,85222,98514,112369],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904514"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of initiation of premeiotic DNA replication.","definition_xrefs":["GO_REF:0000058","PMID:25891897","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA-templated DNA replication initiation","termid":"GO:0030174"},{"relation_name":"is_a","term_name":"regulation of nuclear cell cycle DNA replication","termid":"GO:0033262"},{"relation_name":"is_a","term_name":"regulation of meiotic cell cycle","termid":"GO:0051445"},{"relation_name":"regulates","term_name":"meiotic DNA replication initiation","termid":"GO:1902974"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_03048":null,"SJAG_03438":null,"SJAG_03720":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006260"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0006260","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"regulation of initiation of premeiotic DNA replication","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of initiation of meiotic DNA synthesis","type":"related"},{"name":"regulation of initiation of premeiotic DNA synthesis","type":"related"},{"name":"regulation of meiotic DNA replication initiation","type":"related"},{"name":"regulation of premeiotic DNA replication initiation","type":"exact"}],"termid":"GO:1904512","terms_by_termid":{"GO:1904514":null}}


id: PBO:0089609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein complex subunit Emc1","termid":"PBO:0089609"}


id: GO:0003205
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of a cardiac chamber over time, from its formation to the mature structure. A cardiac chamber is an enclosed cavity within the heart.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"heart development","termid":"GO:0007507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac chamber development","termid":"GO:0003205"}


id: PBO:0004796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sporulation protein Meu14","termid":"PBO:0004796"}


id: PBO:0026787
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_ergosta-5,7,22,24(28)-tetraen-3beta-ol_level","termid":"PBO:0026787"}


id: PBO:0069473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 740, pseudogene","termid":"PBO:0069473"}


id: FYPO:0005469
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce an inviable cell that does not divide, and eventually lyses.","definition_xrefs":["PMID:8978670","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division","termid":"FYPO:0001991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000004","FYPO:0001320"],"is_obsolete":false,"name":"inviable after spore germination, without cell division, lysed cell","synonyms":[{"name":"inviable after spore germination, undivided lysed cell","type":"exact"},{"name":"inviable following spore germination, without cell division, with cell lysis","type":"exact"},{"name":"inviable germinated spore, without cell division, with cell lysis","type":"exact"},{"name":"lethal after spore germination, without cell division, with cell lysis","type":"exact"}],"termid":"FYPO:0005469"}


id: PBO:0056237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane associated guanylate kinase, WW and PDZ domain containing 3","termid":"PBO:0056237"}


id: MOD:01979
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O-(L-isoglutamyl)-L-threonine, using free L-glutamine and releasing ammonia, or using a peptidyl L-glutamine and releasing ammonia.","definition_xrefs":["PubMed:8706862","RESID:AA0536"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"crosslinked L-threonine residue","termid":"MOD:02056"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-(L-isoglutamyl)-L-threonine","synonyms":[{"name":"(2S)-2-amino-5-([(1S,2R)-1-amino-1-carboxypropan-2-yl]oxy)-5-oxopentanoic acid","type":"exact"},{"name":"(2S,3R)-2-amino-3-([(4S)-4-amino-4-carboxybutanoyl]oxy)-propanoic acid","type":"exact"},{"name":"5-(threon-O3-yl)glutamate","type":"exact"},{"name":"O(beta)-(gamma-glutamyl)threonine","type":"exact"},{"name":"O-(L-isoglutamyl)-L-threonine","type":"exact"},{"name":"O3-(isoglutamyl)threonine","type":"exact"}],"termid":"MOD:01979"}


id: PBO:0050245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 23","termid":"PBO:0050245"}


id: MOD:01193
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative -","definition_xrefs":["Unimod:264#T","PubMed:1093385"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorylation to pyridyl thiol","termid":"MOD:00586"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphorylation to pyridyl thiol - site T","synonyms":[{"name":"PET","type":"related"},{"name":"phosphorylation to pyridyl thiol","type":"related"}],"termid":"MOD:01193"}


id: GO:0070032
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A SNARE complex that contains synaptobrevin 2 (VAMP2), SNAP-25, syntaxin 1a, and complexin I (or orthologs thereof).","definition_xrefs":["PMID:7553862"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SNARE complex","termid":"GO:0031201"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex","synonyms":[{"name":"SNARE complex (Vamp2, Snap25, Stx1a, Cplx1)","type":"narrow"},{"name":"Vamp2-Snap25-Stx1a-Cplx1 complex","type":"narrow"}],"termid":"GO:0070032"}


id: GO:0042039
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The incorporation of vanadium a metallo-sulfur cluster such as VFe(7-8)S(n).","definition_xrefs":["PMID:11053414"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal incorporation into metallo-sulfur cluster","termid":"GO:0018282"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"vanadium incorporation into metallo-sulfur cluster","synonyms":[{"name":"vanadium incorporation into metallo-sulphur cluster","type":"exact"}],"termid":"GO:0042039"}


id: GO:0009479
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A cytochrome c that is characteristic of green plants and transfers electrons to plastocyanin.","definition_xrefs":["PMID:1655423"],"gene_count":0,"genotype_count":0,"name":"obsolete cytochrome f (obsolete GO:0009479)","synonyms":[{"name":"cytochrome f","type":"exact"}],"termid":"GO:0009479"}


id: GO:0043582
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the sporangium over time, from its formation to the mature structure. A sporangium is a structure producing and containing spores.","definition_xrefs":["Wikipedia:Sporagium","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spore-bearing structure development","termid":"GO:0075259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sporangium development","synonyms":[{"name":"sporangia development","type":"exact"}],"termid":"GO:0043582"}


id: PBO:0069851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1137, pseudogene","termid":"PBO:0069851"}


id: PBO:0058309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4682","termid":"PBO:0058309"}


id: PBO:0030643
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cell_cycle_arrest_in_mitotic_G2_phase_during_stationary_phase","termid":"PBO:0030643"}


id: PBO:0041900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CACN subunit beta associated regulatory protein","termid":"PBO:0041900"}


id: FYPO:0004807
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which the cell is narrower than normal at the point where cell fusion occurred during mating. Normally, the cell expands at the fusion site after fusion takes place.","definition_xrefs":["PMID:25825517","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell shape","termid":"FYPO:0001126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000005","FYPO:0001985"],"is_obsolete":false,"name":"narrow cell fusion site following mating","synonyms":[{"name":"narrow cell fusion site following conjugation","type":"exact"},{"name":"narrow cell fusion site following conjugation with cellular fusion","type":"exact"},{"name":"narrow cell-cell fusion site following conjugation with cellular fusion","type":"exact"}],"termid":"FYPO:0004807"}


id: PBO:0053492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 470","termid":"PBO:0053492"}


id: PBO:0060180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mucin 1, cell surface associated","termid":"PBO:0060180"}


id: PBO:0044940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DHCR24 divergent transcript","termid":"PBO:0044940"}


id: GO:0000428
data:
  {"annotated_genes":["SJAG_00872","SJAG_00637","SJAG_03289","SJAG_03761","SJAG_01808","SJAG_04977","SJAG_03144","SJAG_01207","SJAG_00139","SJAG_01765","SJAG_04894","SJAG_01436","SJAG_04274","SJAG_00095","SJAG_04654","SJAG_01128","SJAG_02627","SJAG_00735","SJAG_01444","SJAG_03014","SJAG_00119","SJAG_01313","SJAG_04934","SJAG_03900","SJAG_00421","SJAG_03181","SJAG_02458","SJAG_00758","SJAG_02506","SJAG_03118","SJAG_02101","SJAG_02070","SJAG_04030","SJAG_00458","SJAG_03206","SJAG_01713","SJAG_04614","SJAG_00512","SJAG_03578","SJAG_01610","SJAG_03107","SJAG_03468","SJAG_04408","SJAG_03035","SJAG_03618","SJAG_01710","SJAG_03956","SJAG_02653","SJAG_00741","SJAG_00995","SJAG_05239","SJAG_04994","SJAG_00731","SJAG_03285","SJAG_04106","SJAG_00901","SJAG_02172","SJAG_04420","SJAG_02871","SJAG_01948","SJAG_03921","SJAG_04368","SJAG_04559","SJAG_04933","SJAG_02174","SJAG_01562","SJAG_02541","SJAG_00116","SJAG_04852","SJAG_00619","SJAG_00159","SJAG_01151","SJAG_00584","SJAG_04261","SJAG_04161","SJAG_01475","SJAG_04917","SJAG_00150","SJAG_01698","SJAG_02600"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[95543,113451,93566,101441],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005658"},{"annotations":[95281,99188,91349,101481,107605],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0016593"},{"annotations":[83585,91272],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034245"},{"annotations":[111643,86529,90037,98670,85708,109932,91884,83850,98813,109646,88160,101905,109276,83849,105909,99475,109645,110344,106813,100995],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005736"},{"annotations":[90229,90038,97137,97908,92952,105400,108979,110794,109933,88161,103822,101906,99476],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0005665"},{"annotations":[105401,103823,97909,99477,97138,88162,109934,110795,90230,90039,92953],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016591"},{"annotations":[98814,89144,97675,88163,109935,107601,94295,97636,112897,101907,99478,108511,85709,90040,112588,111791,104566],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005666"},{"annotations":[103807,113461],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005672"},{"annotations":[89640,99754,85434,84513,84773,92172,113676,92940,90281,110924,96354,83557,91720,110359,111506,103023],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005669"},{"annotations":[93755,111198],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005673"},{"annotations":[98432,111105,89641],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005674"},{"annotations":[104609,102158,111264,110958,86408,88303,99285,105110,86044],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005675"},{"annotations":[108212,109102,102159],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070985"}]},"cv_name":"cellular_component","definition":"A protein complex that possesses DNA-directed RNA polymerase activity.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase 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RNA polymerase complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0000428","terms_by_termid":{"GO:0005658":null,"GO:0005665":null,"GO:0005666":null,"GO:0005669":null,"GO:0005672":null,"GO:0005673":null,"GO:0005674":null,"GO:0005675":null,"GO:0005736":null,"GO:0016591":null,"GO:0016593":null,"GO:0034245":null,"GO:0070985":null}}


id: PBO:0046433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epoxide hydrolase 3","termid":"PBO:0046433"}


id: GO:0010139
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The pathway by which pyrimidine bases or pyrimidine deoxyribonucleotides from pyrimidine nucleotide breakdown are converted back to pyrimidine deoxyribonucleotides. The salvage pathway is important where there is no de novo pyrimidine deoxyribonucleotide biosynthesis.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleotide biosynthetic process","termid":"GO:0009221"},{"relation_name":"is_a","term_name":"pyrimidine nucleotide salvage","termid":"GO:0032262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"pyrimidine deoxyribonucleotide salvage","secondary_identifiers":["MetaCyc:PWY-7199"],"termid":"GO:0010139"}


id: PBO:0083562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps verified gene VID21/YDR359C","termid":"PBO:0083562"}


id: MOD:01239
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification produced by formation of an adduct of an L-histidine residue with 4-hydroxynonenal.","definition_xrefs":["PubMed:10717661","PubMed:15133838","Unimod:53#H","PubMed:11327326"],"direct_ancestors":[{"relation_name":"is_a","term_name":"4-hydroxynonenal adduct","termid":"MOD:00446"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histidine 4-hydroxynonenal adduct","synonyms":[{"name":"4-hydroxynonenal (HNE)","type":"related"},{"name":"HNE","type":"related"}],"termid":"MOD:01239"}


id: GO:0097198
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by addition of three methyl groups to lysine at position 36 of the histone.","definition_xrefs":["PMID:17948059","GOC:se"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K36 trimethylation (obsolete GO:0097198)","termid":"GO:0097198"}


id: PBO:0083287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in other Saccharomyces species; overlaps the verified gene GPD1; deletion confers sensitivity to GSAO; deletion in cyr1 mutant results in loss of stress resistance","termid":"PBO:0083287"}


id: FYPO:0008056
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which a poly(A)-specific ribonuclease activity is absent.","definition_xrefs":["PMID:19307292"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished ribonuclease activity","termid":"FYPO:0006301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0001985","FYPO:0000707","FYPO:0000652","FYPO:0000654"],"is_obsolete":false,"name":"abolished poly(A)-specific ribonuclease activity","termid":"FYPO:0008056"}


id: PBO:0092034
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F1-FO ATP synthase subunit 9","termid":"PBO:0092034"}


id: GO:1901460
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of response to formic acid.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stimulus","termid":"GO:0048583"},{"relation_name":"regulates","term_name":"response to formic acid","termid":"GO:1901425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of response to formic acid","termid":"GO:1901460"}


id: PBO:0070319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY3 pseudogene 8","termid":"PBO:0070319"}


id: PBO:0054318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1710","termid":"PBO:0054318"}


id: FYECO:0000174
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which ferrous chloride was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ FeCl2","synonyms":[{"name":"iron chloride added","type":"related"},{"name":"iron dichloride added","type":"related"},{"name":"iron(II) chloride","type":"exact"}],"termid":"FYECO:0000174"}


id: GO:0000823
data:
  {"annotated_genes":["SJAG_03409"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94935],"is_not":false,"summary":null,"term":"GO:0000823"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-myo-inositol 1,4,5-trisphosphate + 2 ATP = D-myo-inositol 1,4,5,6-tetrakisphosphate + 2 ADP + 2 H+.","definition_xrefs":["RHEA:32359"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol trisphosphate kinase activity","termid":"GO:0051766"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03409":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016301"],"is_obsolete":false,"name":"inositol-1,4,5-trisphosphate 6-kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:2.7.1.151-RXN","EC:2.7.1.151","KEGG_REACTION:R05800"],"synonyms":[{"name":"IpmK","type":"broad"},{"name":"inositol polyphosphate multikinase activity","type":"broad"},{"name":"inositol trisphosphate 6-kinase activity","type":"broad"}],"termid":"GO:0000823","terms_by_termid":{"GO:0000823":null}}


id: GO:1904445
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of establishment of Sertoli cell barrier.","definition_xrefs":["GO_REF:0000058","PMID:18057314","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell development","termid":"GO:0010721"},{"relation_name":"is_a","term_name":"negative regulation of epithelial cell differentiation","termid":"GO:0030857"},{"relation_name":"is_a","term_name":"regulation of establishment of Sertoli cell barrier","termid":"GO:1904444"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"establishment of Sertoli cell barrier","termid":"GO:0097368"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of establishment of Sertoli cell barrier","synonyms":[{"name":"down regulation of establishment of BTB","type":"exact"},{"name":"down regulation of establishment of SCB","type":"exact"},{"name":"down regulation of establishment of Sertoli cell barrier","type":"exact"},{"name":"down regulation of establishment of blood-testis barrier","type":"exact"},{"name":"down-regulation of establishment of BTB","type":"exact"},{"name":"down-regulation of establishment of SCB","type":"exact"},{"name":"down-regulation of establishment of Sertoli cell barrier","type":"exact"},{"name":"down-regulation of establishment of blood-testis barrier","type":"exact"},{"name":"downregulation of establishment of BTB","type":"exact"},{"name":"downregulation of establishment of SCB","type":"exact"},{"name":"downregulation of establishment of Sertoli cell barrier","type":"exact"},{"name":"downregulation of establishment of blood-testis barrier","type":"exact"},{"name":"inhibition of establishment of BTB","type":"narrow"},{"name":"inhibition of establishment of SCB","type":"narrow"},{"name":"inhibition of establishment of Sertoli cell barrier","type":"narrow"},{"name":"inhibition of establishment of blood-testis barrier","type":"narrow"},{"name":"negative regulation of establishment of BTB","type":"exact"},{"name":"negative regulation of establishment of SCB","type":"exact"},{"name":"negative regulation of establishment of blood-testis barrier","type":"exact"}],"termid":"GO:1904445"}


id: PBO:0113067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the TOM (translocase of outer membrane) complex; involved in the recognition and initial import steps for all mitochondrially-directed proteins, acting as a receptor for incoming precursor proteins; moonlighting role as a transcriptional regulator of mitochondrial proteins; age-dependent reduction in Tom70p results in mitochondrial dysfunction, a hallmark of aging; localizes to mitochondria–ER contact sites; TOM70 has a paralog, TOM71, that arose from the whole genome duplication","termid":"PBO:0113067"}


id: PBO:0109144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo-type fold protein, DUF1941 family protein Asi1","termid":"PBO:0109144"}


id: SO:0000357
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing a region that is bounded either side by a particular kind of region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_attribute","termid":"SO:0000733"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flanked","termid":"SO:0000357"}


id: GO:0150037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of calcium-dependent activation of synaptic vesicle fusion.","definition_xrefs":["GOC:aruk","PMID:27052163","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of synaptic vesicle fusion to presynaptic active zone membrane","termid":"GO:0031630"},{"relation_name":"regulates","term_name":"calcium-dependent activation of synaptic vesicle fusion","termid":"GO:0099502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0016192","GO:0061024","GO:0006810"],"is_obsolete":false,"name":"regulation of calcium-dependent activation of synaptic vesicle fusion","termid":"GO:0150037"}


id: PBO:0046655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"establishment of sister chromatid cohesion N-acetyltransferase 2","termid":"PBO:0046655"}


id: PBO:0054457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1854","termid":"PBO:0054457"}


id: FYPO:0000920
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of aconitate hydratase (also known as aconitase) activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000707","FYPO:0000652","FYPO:0000661","FYPO:0001985"],"is_obsolete":false,"name":"abnormal aconitate hydratase activity","synonyms":[{"name":"abnormal aconitase activity","type":"exact"}],"termid":"FYPO:0000920"}


id: FYPO:0007879
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein degradation does not occur during a cellular response to methyl methanesulfonate. Protein degradation, also known as protein catabolism, is any metabolic process that results in the destruction of the native, active configuration of a protein, with or without the hydrolysis of peptide bonds.","definition_xrefs":["GO:0030163","PMID:34608864","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein degradation during vegetative growth","termid":"FYPO:0000845"},{"relation_name":"is_a","term_name":"abolished biological process","termid":"FYPO:0005448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0002274","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein degradation during cellular response to methyl methanesulfonate","synonyms":[{"name":"abolished protein breakdown during cellular response to methyl methanesulfonate","type":"exact"},{"name":"abolished protein catabolic process during cellular response to methyl methanesulfonate","type":"exact"},{"name":"abolished protein catabolism during cellular response to methyl methanesulfonate","type":"exact"},{"name":"abolished protein degradation during cellular response to MMS","type":"exact"},{"name":"abolished protein degradation during cellular response to methyl methanesulfonate during mitotic cell cycle","type":"related"},{"name":"abolished protein degradation during cellular response to methyl methanesulfonate during vegetative growth","type":"exact"},{"name":"protein degradation during cellular response to methyl methanesulfonate abolished","type":"exact"}],"termid":"FYPO:0007879"}


id: FYPO:0001501
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to brefeldin A. Cells stop growing (and may die) at a concentration of brefeldin A that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0001985","FYPO:0000003","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to brefeldin A","synonyms":[{"name":"hypersensitive to brefeldin A","type":"exact"},{"name":"sensitive to BFA","type":"exact"},{"name":"sensitive to brefeldin A during mitotic cell cycle","type":"related"},{"name":"sensitive to brefeldin A during vegetative growth","type":"exact"}],"termid":"FYPO:0001501"}


id: PBO:0059429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MRT4 homolog, ribosome maturation factor","termid":"PBO:0059429"}


id: PBO:0090044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Imp4","termid":"PBO:0090044"}


id: PBO:0017589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy associated beclin family protein Atg6","termid":"PBO:0017589"}


id: PBO:0045766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ECI1 antisense RNA 1","termid":"PBO:0045766"}


id: GO:0002099
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a guanine in t position 34 of a tRNA is post-transcriptionally modified.","definition_xrefs":["ISBN:155581073X","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA wobble base modification","termid":"GO:0002097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"}],"interesting_parent_ids":["GO:0006399","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"tRNA wobble guanine modification","termid":"GO:0002099"}


id: PBO:0058564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6506","termid":"PBO:0058564"}


id: GO:0042102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of T cell proliferation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T cell proliferation","termid":"GO:0042129"},{"relation_name":"is_a","term_name":"positive regulation of lymphocyte proliferation","termid":"GO:0050671"},{"relation_name":"is_a","term_name":"positive regulation of T cell activation","termid":"GO:0050870"},{"relation_name":"positively_regulates","term_name":"T cell proliferation","termid":"GO:0042098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"positive regulation of T cell proliferation","synonyms":[{"name":"activation of T cell proliferation","type":"narrow"},{"name":"positive regulation of T lymphocyte proliferation","type":"exact"},{"name":"positive regulation of T-lymphocyte proliferation","type":"exact"},{"name":"stimulation of T cell proliferation","type":"narrow"},{"name":"up regulation of T cell proliferation","type":"exact"},{"name":"up-regulation of T cell proliferation","type":"exact"},{"name":"upregulation of T cell proliferation","type":"exact"}],"termid":"GO:0042102"}


id: GO:0075019
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont appressorium formation.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of appressorium formation","termid":"GO:0075017"},{"relation_name":"negatively_regulates","term_name":"appressorium formation","termid":"GO:0075016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of appressorium formation","synonyms":[{"name":"negative regulation of appressorium formation on or near host","type":"related"}],"termid":"GO:0075019"}


id: PBO:0005430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L37 (predicted)","termid":"PBO:0005430"}


id: PBO:0088758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 associated protein Utp25","termid":"PBO:0088758"}


id: PBO:0058972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malectin","termid":"PBO:0058972"}


id: PBO:0048351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 62","termid":"PBO:0048351"}


id: PATO:0001777
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A flexibility which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"flexible","termid":"PATO:0001544"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased flexibility","synonyms":[{"name":"low flexibility","type":"exact"}],"termid":"PATO:0001777"}


id: GO:0002174
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of a mammary stem cell population by cell division. Mammary stem cells are a source of cells for growth of the mammary gland during puberty and gestation. These cells can give rise to both the luminal and myoepithelial cell types of the gland, and can regenerate the entire organ.","definition_xrefs":["PMID:15987436"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population proliferation","termid":"GO:0008283"},{"relation_name":"part_of","term_name":"mammary gland development","termid":"GO:0030879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mammary stem cell proliferation","termid":"GO:0002174"}


id: GO:0060673
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that mediates the transfer of information from one cell to another.","definition_xrefs":["GOC:dph","PMID:16916377"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling","termid":"GO:0007267"},{"relation_name":"part_of","term_name":"embryonic placenta development","termid":"GO:0001892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"cell-cell signaling involved in placenta development","synonyms":[{"name":"cell-cell signalling involved in placenta development","type":"exact"}],"termid":"GO:0060673"}


id: GO:0032090
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a Pyrin (PAAD/DAPIN) domain, a protein-protein interaction domain that has the same fold as the Death domain.","definition_xrefs":["GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"Pyrin domain binding","synonyms":[{"name":"DAPIN domain binding","type":"exact"},{"name":"PAAD domain binding","type":"exact"}],"termid":"GO:0032090"}


id: PBO:0050337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 39","termid":"PBO:0050337"}


id: PBO:0080089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 50","termid":"PBO:0080089"}


id: PR:Q09873
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- wdr21 gene.","definition_xrefs":["UniProtKB:Q09873","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat-containing protein 21 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC12G12.10","synonyms":[{"name":"Spom972h-wdr21","type":"exact"}],"termid":"PR:Q09873"}


id: PBO:0059387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S23","termid":"PBO:0059387"}


id: PBO:0072314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26","termid":"PBO:0072314"}


id: PBO:0001742
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chromosome Region Maintenance","termid":"PBO:0001742"}


id: GO:0043648
data:
  {"annotated_genes":["SJAG_00695","SJAG_04156","SJAG_00234","SJAG_03275","SJAG_02176","SJAG_00203","SJAG_00815","SJAG_04054","SJAG_00495","SJAG_00106","SJAG_01592","SJAG_03574","SJAG_01753","SJAG_00529","SJAG_03224","SJAG_01574","SJAG_01903","SJAG_01198","SJAG_01126","SJAG_04843","SJAG_03434","SJAG_04145","SJAG_02225","SJAG_02276","SJAG_03457","SJAG_01630","SJAG_00493","SJAG_02408","SJAG_00937","SJAG_00714","SJAG_02235","SJAG_03266","SJAG_00359","SJAG_00881","SJAG_03306"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104473,108545],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009257"},{"annotations":[90411,97661,113846],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019676"},{"annotations":[102893],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019544"},{"annotations":[107943],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019266"},{"annotations":[84018,107944],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006532"},{"annotations":[107945],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006533"},{"annotations":[102107],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006531"},{"annotations":[67757],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006761"},{"annotations":[110188],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046452"},{"annotations":[104474,109813,100908,86452,101056,102199,108546],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046656"},{"annotations":[110189],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046655"},{"annotations":[86322,111865],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006106"},{"annotations":[78493],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006538"},{"annotations":[87838],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006540"},{"annotations":[108038,92818,100871,87024,89062,109583,107946,84019,98755],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006536"},{"annotations":[97662,113847,107361],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097054"},{"annotations":[111908,102109],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009089"},{"annotations":[61489,114611,111866],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006108"},{"annotations":[91092,102899],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006107"},{"annotations":[103244,114113],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010133"},{"annotations":[109260],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006105"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving dicarboxylic acids, any organic acid containing two carboxyl (COOH) groups or anions (COO-).","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"}],"gene_count":35,"genes_by_uniquename":{"SJAG_00106":null,"SJAG_00203":null,"SJAG_00234":null,"SJAG_00359":null,"SJAG_00493":null,"SJAG_00495":null,"SJAG_00529":null,"SJAG_00695":null,"SJAG_00714":null,"SJAG_00815":null,"SJAG_00881":null,"SJAG_00937":null,"SJAG_01126":null,"SJAG_01198":null,"SJAG_01574":null,"SJAG_01592":null,"SJAG_01630":null,"SJAG_01753":null,"SJAG_01903":null,"SJAG_02176":null,"SJAG_02225":null,"SJAG_02235":null,"SJAG_02276":null,"SJAG_02408":null,"SJAG_03224":null,"SJAG_03266":null,"SJAG_03275":null,"SJAG_03306":null,"SJAG_03434":null,"SJAG_03457":null,"SJAG_03574":null,"SJAG_04054":null,"SJAG_04145":null,"SJAG_04156":null,"SJAG_04843":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"dicarboxylic acid metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"dicarboxylate metabolic process","type":"exact"},{"name":"dicarboxylate metabolism","type":"exact"},{"name":"dicarboxylic acid metabolism","type":"exact"}],"termid":"GO:0043648","terms_by_termid":{"GO:0006105":null,"GO:0006106":null,"GO:0006107":null,"GO:0006108":null,"GO:0006531":null,"GO:0006532":null,"GO:0006533":null,"GO:0006536":null,"GO:0006538":null,"GO:0006540":null,"GO:0006761":null,"GO:0009089":null,"GO:0009257":null,"GO:0010133":null,"GO:0019266":null,"GO:0019544":null,"GO:0019676":null,"GO:0046452":null,"GO:0046655":null,"GO:0046656":null,"GO:0097054":null}}


id: PBO:0080122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vesicle associated membrane protein 1","termid":"PBO:0080122"}


id: GO:0031124
data:
  {"annotated_genes":["SJAG_04427","SJAG_04022","SJAG_01791","SJAG_02551","SJAG_02668","SJAG_02865","SJAG_04587","SJAG_03126","SJAG_03594","SJAG_03233","SJAG_00435","SJAG_04942","SJAG_00961","SJAG_02037","SJAG_03853","SJAG_01412","SJAG_02720","SJAG_01599","SJAG_01175","SJAG_03500","SJAG_03624","SJAG_00448","SJAG_00527","SJAG_03226"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88953,94651,105345],"is_not":false,"summary":null,"term":"GO:0031124"},{"annotations":[111422,96435,88952,89575,109706,94281,100859,114322,83810,107700,89597,95227,107426,108089,86770,89057,84559,95758,100822,101103,105948,93334],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180010"}]},"cv_name":"biological_process","definition":"Any process involved in forming the mature 3' end of an mRNA molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA processing","termid":"GO:0006397"},{"relation_name":"is_a","term_name":"RNA 3'-end processing","termid":"GO:0031123"}],"gene_count":24,"genes_by_uniquename":{"SJAG_00435":null,"SJAG_00448":null,"SJAG_00527":null,"SJAG_00961":null,"SJAG_01175":null,"SJAG_01412":null,"SJAG_01599":null,"SJAG_01791":null,"SJAG_02037":null,"SJAG_02551":null,"SJAG_02668":null,"SJAG_02720":null,"SJAG_02865":null,"SJAG_03126":null,"SJAG_03226":null,"SJAG_03233":null,"SJAG_03500":null,"SJAG_03594":null,"SJAG_03624":null,"SJAG_03853":null,"SJAG_04022":null,"SJAG_04427":null,"SJAG_04587":null,"SJAG_04942":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0016071","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"mRNA 3'-end processing","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mRNA 3' end processing","type":"exact"}],"termid":"GO:0031124","terms_by_termid":{"GO:0031124":null,"GO:0180010":null}}


id: PBO:0085346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phospholipase B (lysophospholipase) involved in lipid metabolism; hydrolyzes phosphatidylinositol and phosphatidylserine and displays transacylase activity in vitro; PLB3 has a paralog, PLB1, that arose from the whole genome duplication","termid":"PBO:0085346"}


id: GO:0008741
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate.","definition_xrefs":["EC:2.7.1.16"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"},{"relation_name":"is_a","term_name":"carbohydrate kinase activity","termid":"GO:0019200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016301"],"is_obsolete":false,"name":"ribulokinase activity","secondary_identifiers":["RHEA:22072","MetaCyc:RIBULOKIN-RXN"],"synonyms":[{"name":"ATP:L(or D)-ribulose 5-phosphotransferase activity","type":"related"},{"name":"L-ribulokinase activity","type":"exact"},{"name":"ribulokinase (phosphorylating)","type":"related"}],"termid":"GO:0008741"}


id: PBO:0029601
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_transporter_activity","termid":"PBO:0029601"}


id: GO:0070804
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of metula development, a process that leads to the formation of metulae. Metulae are elongated mononucleate cells that bud from the surface of the conidiophore tip.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell development","termid":"GO:0010720"},{"relation_name":"is_a","term_name":"regulation of metula development","termid":"GO:0070802"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"metula development","termid":"GO:0070789"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of metula development","termid":"GO:0070804"}


id: PBO:0070965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L18 pseudogene 3","termid":"PBO:0070965"}


id: GO:0106162
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a cytidine in mRNA + acetyl-CoA + ATP + H2O = ADP + an N(4)-acetylcytidine in mRNA + CoA + H+ + phosphate.","definition_xrefs":["GOC:sp","PMID:30449621"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetyltransferase activity","termid":"GO:0008080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016746"],"is_obsolete":false,"name":"mRNA N-acetyltransferase activity","secondary_identifiers":["RHEA:58480"],"termid":"GO:0106162"}


id: GO:0006956
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway.","definition_xrefs":["GO_REF:0000022","GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune effector process","termid":"GO:0002252"},{"relation_name":"is_a","term_name":"activation of immune response","termid":"GO:0002253"},{"relation_name":"is_a","term_name":"humoral immune response","termid":"GO:0006959"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"complement activation","synonyms":[{"name":"complement activity","type":"related"},{"name":"complement cascade","type":"exact"},{"name":"complement response","type":"exact"}],"termid":"GO:0006956"}


id: PBO:0082421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bifunctional triacylglycerol lipase and LPA acyltransferase; lipid particle-localized triacylglycerol (TAG) lipase involved in triacylglycerol mobilization; catalyzes acylation of lysophosphatidic acid (LPA); potential Cdc28p substrate; TGL5 has a paralog, TGL4, that arose from the whole genome duplication","termid":"PBO:0082421"}


id: PBO:0005170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b5 reductase (predicted)","termid":"PBO:0005170"}


id: GO:1901160
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving primary amino compound.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organonitrogen compound metabolic process","termid":"GO:1901564"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"primary amino compound metabolic process","synonyms":[{"name":"primary amino compound metabolism","type":"exact"}],"termid":"GO:1901160"}


id: FYPO:0003583
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of formation of foci containing the protein Sad1 is increased during a cellular response to DNA damage.","definition_xrefs":["PMID:24943839","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular component assembly during vegetative growth","termid":"FYPO:0001354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased rate of Sad1 focus formation during response to DNA damage","synonyms":[{"name":"increased rate of Sad1 focus formation during response to DNA damage during mitotic cell cycle","type":"related"},{"name":"increased rate of Sad1 focus formation during response to DNA damage during vegetative growth","type":"exact"},{"name":"increased rate of accumulation of Sad1 foci during DNA damage response","type":"exact"}],"termid":"FYPO:0003583"}


id: GO:2000590
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of metanephric mesenchymal cell migration.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell migration","termid":"GO:0030336"},{"relation_name":"is_a","term_name":"negative regulation of metanephros development","termid":"GO:0072217"},{"relation_name":"is_a","term_name":"regulation of metanephric mesenchymal cell migration","termid":"GO:2000589"},{"relation_name":"negatively_regulates","term_name":"metanephric mesenchymal cell migration","termid":"GO:0035789"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of metanephric mesenchymal cell migration","synonyms":[{"name":"negative regulation of metanephric mesenchyme chemotaxis","type":"related"}],"termid":"GO:2000590"}


id: PATO:0001439
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A contractile quality inhering in a bearer by virtue of the bearer's elastic tension that facilitate response to stimuli.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"contractility","termid":"PATO:0001579"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tonicity","secondary_identifiers":["PATO:0001498"],"synonyms":[{"name":"tone","type":"exact"}],"termid":"PATO:0001439"}


id: PBO:0060212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multivesicular body subunit 12B","termid":"PBO:0060212"}


id: PBO:0090385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KH domain RNA-binding protein Pno1","termid":"PBO:0090385"}


id: PBO:0029508
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_swollen_spore","termid":"PBO:0029508"}


id: GO:0052001
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Attachment of bacterial clusters to the surface of the host in a type IV pili dependent manner. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:ml"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adhesion of symbiont to host cell","termid":"GO:0044650"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adhesion to host cell via type IV pili","synonyms":[{"name":"type IV pili-dependent localized adherence to host","type":"exact"}],"termid":"GO:0052001"}


id: PR:O74364
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- adn1 gene.","definition_xrefs":["UniProtKB:O74364","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adhesion defective protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC30B4.03c","synonyms":[{"name":"Spom972h-adn1","type":"exact"}],"termid":"PR:O74364"}


id: PBO:0030131
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_iron_level","termid":"PBO:0030131"}


id: GO:0048701
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the cranial skeleton are generated and organized during the embryonic phase.","definition_xrefs":["GOC:jid","PMID:16049113","GOC:dsf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic skeletal system morphogenesis","termid":"GO:0048704"},{"relation_name":"part_of","term_name":"cranial skeletal system development","termid":"GO:1904888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic cranial skeleton morphogenesis","synonyms":[{"name":"embryonic cranium morphogenesis","type":"exact"}],"termid":"GO:0048701"}


id: GO:0061264
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into a mesonephric glomerular mesangial cell.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerular mesangial cell fate commitment","termid":"GO:0072152"},{"relation_name":"part_of","term_name":"mesonephric glomerular mesangial cell differentiation","termid":"GO:0061259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric glomerular mesangial cell fate commitment","termid":"GO:0061264"}


id: GO:1902932
data:
  {"annotated_genes":["SJAG_04018","SJAG_03538","SJAG_02406"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105981],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070452"},{"annotations":[85199,109818],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090180"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of alcohol biosynthetic process.","definition_xrefs":["GO_REF:0000058","GOC:mengo_curators","GOC:TermGenie","PMID:23332010"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of alcohol biosynthetic process","termid":"GO:1902930"},{"relation_name":"positively_regulates","term_name":"alcohol biosynthetic process","termid":"GO:0046165"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02406":null,"SJAG_03538":null,"SJAG_04018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"positive regulation of alcohol biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of alcohol anabolism","type":"narrow"},{"name":"activation of alcohol biosynthesis","type":"narrow"},{"name":"activation of alcohol biosynthetic process","type":"narrow"},{"name":"activation of alcohol formation","type":"narrow"},{"name":"activation of alcohol synthesis","type":"narrow"},{"name":"positive regulation of alcohol anabolism","type":"exact"},{"name":"positive regulation of alcohol biosynthesis","type":"exact"},{"name":"positive regulation of alcohol formation","type":"exact"},{"name":"positive regulation of alcohol synthesis","type":"exact"},{"name":"positive regulation of solventogenesis","type":"broad"},{"name":"up regulation of alcohol anabolism","type":"exact"},{"name":"up regulation of alcohol biosynthesis","type":"exact"},{"name":"up regulation of alcohol biosynthetic process","type":"exact"},{"name":"up regulation of alcohol formation","type":"exact"},{"name":"up regulation of alcohol synthesis","type":"exact"},{"name":"up-regulation of alcohol anabolism","type":"exact"},{"name":"up-regulation of alcohol biosynthesis","type":"exact"},{"name":"up-regulation of alcohol biosynthetic process","type":"exact"},{"name":"up-regulation of alcohol formation","type":"exact"},{"name":"up-regulation of alcohol synthesis","type":"exact"},{"name":"upregulation of alcohol anabolism","type":"exact"},{"name":"upregulation of alcohol biosynthesis","type":"exact"},{"name":"upregulation of alcohol biosynthetic process","type":"exact"},{"name":"upregulation of alcohol formation","type":"exact"},{"name":"upregulation of alcohol synthesis","type":"exact"}],"termid":"GO:1902932","terms_by_termid":{"GO:0070452":null,"GO:0090180":null}}


id: MOD:00187
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes an L-tyrosine residue with L-thyroxine.","definition_xrefs":["RESID:AA0178","PubMed:6704086","ChEBI:18332","Unimod:398"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iodinated tyrosine","termid":"MOD:00998"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-thyroxine","synonyms":[{"name":"(S)-2-amino-3-[4-(4-hydroxy-3,5-diiodophenoxy)-3,5-diiodophenyl]propanoic acid","type":"exact"},{"name":"3',3'',5',5''-tetraiodo-L-thyronine","type":"exact"},{"name":"3,3',5,5'-tetraiodo-L-thyronine","type":"exact"},{"name":"3,5,3',5'-tetraiodo-L-thyronine","type":"exact"},{"name":"4-(4-hydroxy-3,5-diiodophenoxy)-3,5-diiodo-L-phenylalanine","type":"exact"},{"name":"I4Thy","type":"exact"},{"name":"L-thyroxine","type":"exact"},{"name":"MOD_RES Thyroxine","type":"exact"},{"name":"O-(4-hydroxy-3,5-diiodophenyl)-3,5-diiodo-L-tyrosine","type":"exact"},{"name":"T4","type":"exact"},{"name":"Thyroxine","type":"related"},{"name":"tetraiodo","type":"related"}],"termid":"MOD:00187"}


id: GO:0044142
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the symbiont's increase in size or mass on or near the cells or tissues of the host organism.","definition_xrefs":["GOC:jl","GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of growth of symbiont on or near host surface (obsolete GO:0044142)","termid":"GO:0044142"}


id: PATO:0001055
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An angular placement quality inhering in a bearer by virtue of the bearer's placement at an angle that is greater than 180 degrees but less than 360 degrees to another entity.","definition_xrefs":["thesaurus.maths:thesaurus.maths"],"direct_ancestors":[{"relation_name":"is_a","term_name":"angle","termid":"PATO:0002326"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reflex angle to","termid":"PATO:0001055"}


id: PBO:0083629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Effector of Rab GTPase Sec4p; forms a complex with Sec4p and t-SNARE Sec9p; involved in exocytosis and docking and fusion of post-Golgi vesicles with plasma membrane; regulates cell proliferation and colony development via the Rho1-Tor1 pathway; homolog of Drosophila lgl tumor suppressor; SRO7 has a paralog, SRO77, that arose from the whole genome duplication","termid":"PBO:0083629"}


id: PBO:0034040
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-directly_positively_regulates","termid":"PBO:0034040"}


id: GO:0099044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The initial, indirect interaction between a transport vesicle membrane and the membrane of the endoplasmic reticulum. This interaction is mediated by tethering factors (or complexes), which interact with both membranes. Interaction can occur via direct binding to membrane phospholipids or membrane proteins, or via binding to vesicle coat proteins. This process is distinct from and prior fusion.","definition_xrefs":["PMID:27243008"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle tethering","termid":"GO:0099022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"vesicle tethering to endoplasmic reticulum","termid":"GO:0099044"}


id: PBO:0001466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gluconokinase","termid":"PBO:0001466"}


id: PBO:0073467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sideroflexin 3","termid":"PBO:0073467"}


id: GO:0009995
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The recognition of soluble molecules in the environment.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of chemical stimulus","termid":"GO:0009593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"soluble molecule recognition","termid":"GO:0009995"}


id: PBO:0056126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LysM domain containing 3","termid":"PBO:0056126"}


id: GO:0071932
data:
  {"annotated_genes":["SJAG_04183","SJAG_03780"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100292,108655],"is_not":false,"summary":null,"term":"GO:0071932"}]},"cv_name":"biological_process","definition":"Replication fork processing that involves the unwinding of blocked forks to form four-stranded structures resembling Holliday junctions, which are subsequently resolved.","definition_xrefs":["PMID:19406929"],"direct_ancestors":[{"relation_name":"is_a","term_name":"replication fork processing","termid":"GO:0031297"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03780":null,"SJAG_04183":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0008150","GO:0006260"],"is_obsolete":false,"name":"replication fork reversal","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0071932","terms_by_termid":{"GO:0071932":null}}


id: GO:0006793
data:
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id: PBO:0076108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntaxin 16","termid":"PBO:0076108"}


id: PBO:0052851
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 4-7","termid":"PBO:0052851"}


id: GO:0002923
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id: PBO:0083143
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps 5' end of ORF YMR317W","termid":"PBO:0083143"}


id: PBO:0065461
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PSMD6 antisense RNA 1","termid":"PBO:0065461"}


id: GO:1905622
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id: PBO:0078575
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif-containing 51J, pseudogene","termid":"PBO:0078575"}


id: PBO:0059631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTCH2 pseudogene 3","termid":"PBO:0059631"}


id: PBO:0004913
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquinol-cytochrome-c reductase complex subunit 8, hinge protein (predicted)","termid":"PBO:0004913"}


id: PBO:0039001
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin filament associated protein 1 like 2","termid":"PBO:0039001"}


id: MOD:00581
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  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes one (18)O atom for one (16)O atom.","definition_xrefs":["Unimod:258","OMSSA:87","PubMed:11467524"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(18)O substituted residue","termid":"MOD:00845"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(18)O monosubstituted residue","synonyms":[{"name":"Label:18O(1)","type":"related"},{"name":"O18 Labeling","type":"related"},{"name":"ctermpepo18","type":"exact"}],"termid":"MOD:00581"}


id: GO:0048252
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving lauric acid, a fatty acid with the formula CH3(CH2)10COOH. Derived from vegetable sources.","definition_xrefs":["GOC:jid","PMID:15555597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"medium-chain fatty acid metabolic process","termid":"GO:0051791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"lauric acid metabolic process","synonyms":[{"name":"lauric acid metabolism","type":"exact"},{"name":"n-dodecanoic acid metabolic process","type":"exact"},{"name":"n-dodecanoic acid metabolism","type":"exact"}],"termid":"GO:0048252"}


id: PBO:0039347
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ameloblastin","termid":"PBO:0039347"}


id: GO:0052418
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism involving protein macromolecules within a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete metabolism by organism of protein in other organism involved in symbiotic interaction (obsolete GO:0052418)","synonyms":[{"name":"metabolism by organism of protein in other organism during symbiotic interaction","type":"related"}],"termid":"GO:0052418"}


id: GO:0043794
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: formate + coenzyme F420 = CO2 + reduced coenzyme F420.","definition_xrefs":["PMID:3801411"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors","termid":"GO:0016903"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"formate dehydrogenase (coenzyme F420) activity","secondary_identifiers":["EC:1.2.99.-"],"synonyms":[{"name":"formate dehydrogenase (F420) activity","type":"exact"}],"termid":"GO:0043794"}


id: SO:0000982
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  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transcription terminator that is not dependent upon Rho. Rather, the mRNA contains a sequence that allows it to base-pair with itself and make a stem-loop structure.","direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial_terminator","termid":"SO:0000614"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rho_independent_bacterial_terminator","synonyms":[{"name":"rho independent bacterial terminator","type":"exact"}],"termid":"SO:0000982"}


id: PBO:0079815
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin like with PHD and ring finger domains 2","termid":"PBO:0079815"}


id: PBO:0076871
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 19","termid":"PBO:0076871"}


id: PBO:0070938
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 46","termid":"PBO:0070938"}


id: PBO:0058755
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6879","termid":"PBO:0058755"}


id: PBO:0031353
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_rapamycin","termid":"PBO:0031353"}


id: PBO:0079971
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP9Y pseudogene 9","termid":"PBO:0079971"}


id: PBO:0062858
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"otopetrin 3","termid":"PBO:0062858"}


id: FYPO:0000011
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pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"mad2delta":{"display_name":"mad2delta","display_uniquename":"mad2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01330:allele-1","expression":"Null"}]}]},"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type":{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]},"man1delta":{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]},"mid1delta":{"display_name":"mid1delta","display_uniquename":"mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},"mid1delta__mid2delta":{"display_name":"mid1delta mid2delta","display_uniquename":"mid1delta__mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]},"mid1delta__pom1delta":{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"mid2delta":{"display_name":"mid2delta","display_uniquename":"mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]},"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]},"nup61delta":{"display_name":"nup61delta","display_uniquename":"nup61delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04284:allele-1","expression":"Null"}]}]},"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"rga4delta":{"display_name":"rga4delta","display_uniquename":"rga4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]}]},"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_00871","SJAG_04280","SJAG_02392","SJAG_00118","SJAG_03596","SJAG_04522","SJAG_01143","SJAG_04464"],"name":"abnormal cell cycle","references_by_uniquename":{"PMID:21802294":null,"PMID:23786411":null,"PMID:24184107":null,"PMID:25866389":null,"PMID:27059155":null,"PMID:28954740":null,"PMID:30664646":null,"PMID:32109380":null,"PMID:32915139":null,"PMID:33791858":null},"secondary_identifiers":["FYPO:0000406"],"single_locus_annotated_genes":["SJAG_02592","SJAG_03449","SJAG_01330","SJAG_04464","SJAG_03351","SJAG_04522","SJAG_03575","SJAG_04332","SJAG_01956","SJAG_01143","SJAG_04284","SJAG_02392","SJAG_03596","SJAG_00118"],"single_locus_genotype_uniquenames":["pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","man1delta","sty1delta","nup61delta","apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","rga4delta","cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type","mad2delta","nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","mid1delta","cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","pom1delta","mid2delta","Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal cell-division cycle","type":"exact"},{"name":"cell cycle defects","type":"exact"},{"name":"cell cycle progression: abnormal","type":"related"}],"termid":"FYPO:0000011","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYECO:0000248":null,"FYECO:0000338":null,"FYPO:0000118":null,"FYPO:0000231":null,"FYPO:0000324":null,"FYPO:0000618":null,"FYPO:0000619":null,"FYPO:0000671":null,"FYPO:0000729":null,"FYPO:0001369":null,"FYPO:0002026":null,"FYPO:0002998":null,"FYPO:0003738":null,"FYPO:0004318":null,"FYPO:0007701":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: GO:0090550
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of molybdenum.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to starvation","termid":"GO:0042594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to molybdenum starvation","termid":"GO:0090550"}


id: PBO:0058336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4710","termid":"PBO:0058336"}


id: PBO:0034709
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WSS1 like protein","termid":"PBO:0034709"}


id: GO:0052439
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the deposition of callose by the symbiont in its cell walls, occurring as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by organism of defense-related symbiont cell wall callose deposition (obsolete GO:0052439)","synonyms":[{"name":"modulation by organism of defense-related symbiont cell wall callose deposition","type":"exact"}],"termid":"GO:0052439"}


id: GO:0032483
data:
  {"annotated_genes":["SJAG_04329","SJAG_03488"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[68992,112634],"is_not":false,"summary":null,"term":"GO:0032483"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of Rab protein signal transduction.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of small GTPase mediated signal transduction","termid":"GO:0051056"},{"relation_name":"regulates","term_name":"Rab protein signal transduction","termid":"GO:0032482"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03488":null,"SJAG_04329":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of Rab protein signal transduction","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0032483","terms_by_termid":{"GO:0032483":null}}


id: FYPO:0006195
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which all detectable microtubules are present in fewer bundles than normal (usually only one or two), and bundles are longer than normal and curved around one or both ends of the cell.","definition_xrefs":["PMID:16481403","PomBase:mah","PomBase:vw","PMID:14742702"],"direct_ancestors":[{"relation_name":"has_part","term_name":"long interphase microtubules curved around cell end","termid":"FYPO:0005880"},{"relation_name":"is_a","term_name":"long curved interphase microtubules","termid":"FYPO:0004511"},{"relation_name":"is_a","term_name":"abnormal microtubule bundle","termid":"FYPO:0005558"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0002399","FYPO:0005447","FYPO:0000054","FYPO:0001985"],"is_obsolete":false,"name":"decreased number of elongated microtubule bundles curved around cell end","synonyms":[{"name":"decreased number of elongated MT bundles curved around cell end","type":"exact"},{"name":"decreased number of elongated interphase microtubule bundles curved around cell end","type":"exact"},{"name":"decreased number of elongated microtubule bundles curved around cell end during mitotic cell cycle","type":"related"},{"name":"decreased number of elongated microtubule bundles curved around cell end during vegetative growth","type":"exact"},{"name":"decreased number of elongated microtubule bundles curved around cell tip","type":"exact"},{"name":"decreased number of elongated microtubule bundles curved around end of cell","type":"exact"},{"name":"decreased number of microtubule arrays curved around cell end","type":"related"},{"name":"single elongated microtubule bundle curved around cell end","type":"narrow"}],"termid":"FYPO:0006195"}


id: PBO:0017570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudouridine-5'-phosphatase (predicted)","termid":"PBO:0017570"}


id: PBO:0000153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-C2H2 type","termid":"PBO:0000153"}


id: GO:0034873
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: thioacetamide + O2 + 2 H+ + 2 e- = thioacetamide S-oxide + H2O.","definition_xrefs":["UM-BBD_reactionID:r1312"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"thioacetamide S-oxygenase activity","termid":"GO:0034873"}


id: PBO:0049739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemoglobin subunit beta pseudogene 1","termid":"PBO:0049739"}


id: GO:0052450
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of induced systemic resistance in the symbiont organism; induced systemic resistance is a response that confers broad spectrum systemic resistance to disease and that does not depend upon salicylic acid signaling. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by organism of induced systemic resistance in symbiont (obsolete GO:0052450)","synonyms":[{"name":"modulation by organism of induced systemic resistance in symbiont","type":"exact"}],"termid":"GO:0052450"}


id: PBO:0060108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND6 pseudogene 9","termid":"PBO:0060108"}


id: PBO:0052307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KIAA0319","termid":"PBO:0052307"}


id: PBO:0036493
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26 copies of a 35 amino acid repeat","termid":"PBO:0036493"}


id: PBO:0057654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1246","termid":"PBO:0057654"}


id: GO:0051965
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of synapse assembly, the aggregation, arrangement and bonding together of a set of components to form a synapse.","definition_xrefs":["GOC:pr","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of nervous system development","termid":"GO:0051962"},{"relation_name":"is_a","term_name":"regulation of synapse assembly","termid":"GO:0051963"},{"relation_name":"is_a","term_name":"positive regulation of cell junction assembly","termid":"GO:1901890"},{"relation_name":"positively_regulates","term_name":"synapse assembly","termid":"GO:0007416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"positive regulation of synapse assembly","synonyms":[{"name":"activation of synapse assembly","type":"narrow"},{"name":"positive regulation of synapse biogenesis","type":"exact"},{"name":"positive regulation of synaptogenesis","type":"exact"},{"name":"stimulation of synapse assembly","type":"narrow"},{"name":"up regulation of synapse assembly","type":"exact"},{"name":"up-regulation of synapse assembly","type":"exact"},{"name":"upregulation of synapse assembly","type":"exact"}],"termid":"GO:0051965"}


id: GO:0052805
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of imidazoles, five-membered organic heterocycle containing two nitrogen atoms at positions 1 and 3, or any of its derivatives; compounds containing an imidazole skeleton.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"imidazole-containing compound metabolic process","termid":"GO:0052803"},{"relation_name":"is_a","term_name":"organonitrogen compound catabolic process","termid":"GO:1901565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"imidazole-containing compound catabolic process","synonyms":[{"name":"imidazole breakdown","type":"exact"},{"name":"imidazole catabolism","type":"exact"},{"name":"imidazole degradation","type":"exact"}],"termid":"GO:0052805"}


id: GO:0097451
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Terminal process of astrocyte that extends to the surface of the central nervous system. Together, glial limiting end-feet form the glial limiting membrane or glia limitans.","definition_xrefs":["NIF_Subcellular:sao181458425"],"direct_ancestors":[{"relation_name":"is_a","term_name":"astrocyte end-foot","termid":"GO:0097450"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"glial limiting end-foot","synonyms":[{"name":"glial limiting endfoot","type":"exact"}],"termid":"GO:0097451"}


id: GO:0070210
data:
  {"annotated_genes":["SJAG_02846","SJAG_00581","SJAG_04758","SJAG_04576","SJAG_03441","SJAG_03255","SJAG_02981","SJAG_01926","SJAG_03867","SJAG_02439","SJAG_00441","SJAG_01230","SJAG_04396","SJAG_00868","SJAG_03230","SJAG_04389","SJAG_03627"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[74774,77941,85267,89323,89358,90780,91588,93363,98915,99988,100839,101141,102868,105595,106602,110273,110364],"is_not":false,"summary":null,"term":"GO:0070210"}]},"cv_name":"cellular_component","definition":"A protein complex that contains a histone deacetylase and is part of the chromatin remodeling machinery. In Saccharomyces cerevisiae this complex contains the Rpd3p, Sin3p, Ume1p, Pho23p, Sap30p, Sds3p, Cti6p, Rxt2p, Rxt3p, Dep1p, Ume6p, Ash1p, Dot6p, Snt1, Sif2p, Set3p, Hos2p, Tos4p and Tod6p proteins.","definition_xrefs":["GOC:rb","PMID:19040720"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone deacetylase complex","termid":"GO:0000118"},{"relation_name":"part_of","term_name":"nuclear chromosome","termid":"GO:0000228"},{"relation_name":"part_of","term_name":"chromatin","termid":"GO:0000785"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00441":null,"SJAG_00581":null,"SJAG_00868":null,"SJAG_01230":null,"SJAG_01926":null,"SJAG_02439":null,"SJAG_02846":null,"SJAG_02981":null,"SJAG_03230":null,"SJAG_03255":null,"SJAG_03441":null,"SJAG_03627":null,"SJAG_03867":null,"SJAG_04389":null,"SJAG_04396":null,"SJAG_04576":null,"SJAG_04758":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005694","GO:0005654","GO:0005575"],"is_obsolete":false,"name":"Rpd3L-Expanded complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"Clr6-LE complex","type":"exact"}],"termid":"GO:0070210","terms_by_termid":{"GO:0070210":null}}


id: PBO:0051354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 2/OR2-7 (pseudogene)","termid":"PBO:0051354"}


id: PBO:0051209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 4-55 (pseudogene)","termid":"PBO:0051209"}


id: FYPO:0002995
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which regulation of DNA replication is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"},{"relation_name":"is_a","term_name":"regulation phenotype during vegetative growth","termid":"FYPO:0001334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal regulation of DNA replication","synonyms":[{"name":"normal regulation of DNA replication during mitotic cell cycle","type":"exact"},{"name":"normal regulation of DNA replication during vegetative growth","type":"exact"},{"name":"normal regulation of nuclear cell cycle DNA replication","type":"exact"}],"termid":"FYPO:0002995"}


id: GO:0046357
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of galactarate, the anion of galactaric acid.","definition_xrefs":["GOC:pr","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldaric acid biosynthetic process","termid":"GO:0019578"},{"relation_name":"is_a","term_name":"galactarate metabolic process","termid":"GO:0019580"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"galactarate biosynthetic process","secondary_identifiers":["GO:0042872"],"synonyms":[{"name":"D-galactarate anabolism","type":"related"},{"name":"D-galactarate biosynthesis","type":"related"},{"name":"D-galactarate biosynthetic process","type":"related"},{"name":"D-galactarate formation","type":"related"},{"name":"D-galactarate synthesis","type":"related"},{"name":"galactarate anabolism","type":"exact"},{"name":"galactarate biosynthesis","type":"exact"},{"name":"galactarate formation","type":"exact"},{"name":"galactarate synthesis","type":"exact"}],"termid":"GO:0046357"}


id: GO:0032103
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the rate of a response to an external stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to external stimulus","termid":"GO:0032101"},{"relation_name":"is_a","term_name":"positive regulation of response to stimulus","termid":"GO:0048584"},{"relation_name":"positively_regulates","term_name":"response to external stimulus","termid":"GO:0009605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to external stimulus","synonyms":[{"name":"activation of response to external stimulus","type":"narrow"},{"name":"stimulation of response to external stimulus","type":"narrow"},{"name":"up regulation of response to external stimulus","type":"exact"},{"name":"up-regulation of response to external stimulus","type":"exact"},{"name":"upregulation of response to external stimulus","type":"exact"}],"termid":"GO:0032103"}


id: GO:0004936
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of alpha-adrenergic receptors.","definition_xrefs":["GOC:mah","IUPHAR_GPCR:1274"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adrenergic receptor activity","termid":"GO:0004935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"alpha-adrenergic receptor activity","synonyms":[{"name":"alpha adrenoceptor","type":"exact"}],"termid":"GO:0004936"}


id: PBO:0005481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor Spf30 (predicted)","termid":"PBO:0005481"}


id: SO:0001347
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"1_methylpseudouridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"one_methylpseudouridine","secondary_identifiers":["RNAMOD:055"],"synonyms":[{"name":"1-methylpseudouridine","type":"exact"},{"name":"m1Y","type":"exact"},{"name":"one methylpseudouridine","type":"exact"}],"termid":"SO:0001347"}


id: PBO:0000560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin Kap111 (predicted)","termid":"PBO:0000560"}


id: SO:1000136
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An autosynaptic chromosome is the aneuploid product of recombination between a pericentric inversion and a cytologically wild-type chromosome.","definition_xrefs":["PMID:6804304"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome_structure_variation","termid":"SO:1000183"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autosynaptic_chromosome","synonyms":[{"name":"(Drosophila)A","type":"related"},{"name":"autosynaptic chromosome","type":"exact"}],"termid":"SO:1000136"}


id: PBO:0054461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1858","termid":"PBO:0054461"}


id: GO:0072700
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bismuth (Bi) stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to bismuth","synonyms":[{"name":"response to bismuth ion","type":"exact"}],"termid":"GO:0072700"}


