# genes

id: SPCC553.03
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","flags":["not_load_organism"],"genes_by_uniquename":{"SJAG_02619":null,"SPCC553.03":null},"has_protein_features":false,"interpro_matches":[{"dbname":"CATHGENE3D","evidence":"HMMPfam","id":"G3DSA:1.10.8.60","interpro_id":"","interpro_name":"","interpro_type":"","locations":[{"end":898,"score":0.0,"start":775}],"model":"1xwiA02","name":""},{"dbname":"CATHGENE3D","evidence":"HMMPfam","id":"G3DSA:3.10.330.10","interpro_id":"","interpro_name":"","interpro_type":"","locations":[{"end":165,"score":4.000000067449534e-16,"start":87}],"model":"1wlfA02","name":""},{"dbname":"CATHGENE3D","evidence":"HMMPfam","id":"G3DSA:3.40.50.300","interpro_id":"IPR027417","interpro_name":"P-loop containing nucleoside triphosphate hydrolase","interpro_type":"Homologous_superfamily","locations":[{"end":531,"score":3.699999941847443e-12,"start":354},{"end":906,"score":0.0,"start":602}],"model":"6bmfB01","name":"P-loop containing nucleotide triphosphate hydrolases"},{"dbname":"PFAM","evidence":"HMMPfam","id":"PF00004","interpro_id":"IPR003959","interpro_name":"ATPase, AAA-type, core","interpro_type":"Domain","locations":[{"end":510,"score":6.900000015797048e-10,"start":376},{"end":772,"score":1.7000000521282105e-36,"start":643}],"model":"PF00004","name":"ATPase family associated with various cellular activities (AAA)"},{"dbname":"PFAM","evidence":"HMMPfam","id":"PF09262","interpro_id":"IPR015342","interpro_name":"Peroxisomal ATPase PEX1, N-terminal C-lobe","interpro_type":"Domain","locations":[{"end":164,"score":3.0000001167615996e-16,"start":91}],"model":"PF09262","name":"Peroxisome biogenesis factor 1, N-terminal"},{"dbname":"PFAM","evidence":"HMMPfam","id":"PF17862","interpro_id":"IPR041569","interpro_name":"AAA ATPase, AAA+ lid domain","interpro_type":"Domain","locations":[{"end":833,"score":0.002300000051036477,"start":798}],"model":"PF17862","name":"AAA+ lid domain"},{"dbname":"PANTHER","evidence":"HMMPfam","id":"PTHR23077","interpro_id":"IPR050168","interpro_name":"AAA ATPase domain-containing protein","interpro_type":"Family","locations":[{"end":913,"score":0.0,"start":89}],"model":"PTHR23077:SF12","name":"AAA-FAMILY ATPASE"},{"dbname":"SMART","evidence":"Smart scan","id":"SM00382","interpro_id":"IPR003593","interpro_name":"AAA+ ATPase domain","interpro_type":"Domain","locations":[{"end":503,"score":1.100000023841858,"start":371},{"end":775,"score":1.4999999525016814e-15,"start":639}],"model":"SM00382","name":"ATPases associated with a variety of cellular activities"},{"dbname":"SSF","evidence":"HMMPfam","id":"SSF52540","interpro_id":"IPR027417","interpro_name":"P-loop containing nucleoside triphosphate hydrolase","interpro_type":"Homologous_superfamily","locations":[{"end":590,"score":8.820000430960248e-19,"start":361},{"end":911,"score":0.0,"start":605}],"model":"0042094","name":"P-loop containing nucleoside triphosphate hydrolases"},{"dbname":"SSF","evidence":"HMMPfam","id":"SSF54585","interpro_id":"IPR029067","interpro_name":"CDC48 domain 2-like superfamily","interpro_type":"Homologous_superfamily","locations":[{"end":164,"score":3.730000159511386e-18,"start":88}],"model":"0044984","name":"Cdc48 domain 2-like"},{"dbname":"CDD","evidence":"RPS-BLAST","id":"cd19526","interpro_id":"","interpro_name":"","interpro_type":"","locations":[{"end":771,"score":0.0,"start":614}],"model":"cd19526","name":"second of two ATPase domains of Peroxisomal biogenesis factor 1 (PEX1)"}],"name":"pex1","ortholog_annotations":[{"gene_uniquename":"SPCC553.03","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_02619","reference_uniquename":"PMID:21511999"}],"product":"AAA family ATPase Pex1","references_by_uniquename":{"PMID:21511999":null},"taxonid":4896,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniprot_identifier":"O74941","uniquename":"SPCC553.03"}


id: SPCC553.04
data:
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id: SPCC553.06
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","flags":["not_load_organism"],"genes_by_uniquename":{"SJAG_04090":null,"SPCC553.06":null},"has_protein_features":false,"interpro_matches":[{"dbname":"PFAM","evidence":"HMMPfam","id":"PF05817","interpro_id":"IPR008814","interpro_name":"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1","interpro_type":"Family","locations":[{"end":260,"score":2.800000009628434e-9,"start":56}],"model":"PF05817","name":"Oligosaccharyltransferase subunit Ribophorin II"},{"dbname":"PANTHER","evidence":"HMMPfam","id":"PTHR12640","interpro_id":"IPR008814","interpro_name":"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1","interpro_type":"Family","locations":[{"end":262,"score":3.09999990162312e-20,"start":22}],"model":"PTHR12640:SF0","name":"RIBOPHORIN II"}],"name":"swp1","ortholog_annotations":[{"gene_uniquename":"SPCC553.06","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_04090","reference_uniquename":"PMID:21511999"}],"product":"oligosaccharyltransferase compex delta subunit, Swp1","references_by_uniquename":{"PMID:21511999":null},"taxonid":4896,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniprot_identifier":"O74943","uniquename":"SPCC553.06"}


id: SPCC553.07c
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","flags":["not_load_organism"],"genes_by_uniquename":{"SJAG_04089":null,"SPCC553.07c":null},"has_protein_features":false,"interpro_matches":[{"dbname":"CATHGENE3D","evidence":"HMMPfam","id":"G3DSA:1.10.150.810","interpro_id":"","interpro_name":"","interpro_type":"","locations":[{"end":136,"score":3.100000032421054e-16,"start":41},{"end":364,"score":8.399999797536887e-16,"start":293}],"model":"6cstB01","name":""},{"dbname":"CATHGENE3D","evidence":"HMMPfam","id":"G3DSA:3.30.1490.100","interpro_id":"IPR036775","interpro_name":"DNA polymerase, Y-family, little finger domain superfamily","interpro_type":"Homologous_superfamily","locations":[{"end":477,"score":3.099999952110218e-22,"start":370}],"model":"6cstA04","name":"DNA polymerase, Y-family, little finger domain"},{"dbname":"CATHGENE3D","evidence":"HMMPfam","id":"G3DSA:3.30.160.60","interpro_id":"","interpro_name":"","interpro_type":"","locations":[{"end":516,"score":1.3999999737279722e-7,"start":486}],"model":"3vhtB02","name":"Classic Zinc Finger"},{"dbname":"CATHGENE3D","evidence":"HMMPfam","id":"G3DSA:3.30.70.270","interpro_id":"IPR043128","interpro_name":"Reverse transcriptase/Diguanylate cyclase domain","interpro_type":"Homologous_superfamily","locations":[{"end":292,"score":0.0,"start":137}],"model":"5yuyA01","name":""},{"dbname":"CATHGENE3D","evidence":"HMMPfam","id":"G3DSA:3.40.1170.60","interpro_id":"","interpro_name":"","interpro_type":"","locations":[{"end":196,"score":0.0,"start":149}],"model":"5yuyA02","name":""},{"dbname":"HAMAP","evidence":"PrfScan","id":"MF_01113","interpro_id":"IPR022880","interpro_name":"DNA polymerase IV","interpro_type":"Family","locations":[{"end":484,"score":0.0,"start":129}],"model":"MF_01113","name":"DNA polymerase IV [dinB]"},{"dbname":"PFAM","evidence":"HMMPfam","id":"PF00817","interpro_id":"IPR001126","interpro_name":"UmuC domain","interpro_type":"Domain","locations":[{"end":283,"score":7.70013506146487e-42,"start":135}],"model":"PF00817","name":"impB/mucB/samB family"},{"dbname":"PFAM","evidence":"HMMPfam","id":"PF11799","interpro_id":"IPR017961","interpro_name":"DNA polymerase, Y-family, little finger domain","interpro_type":"Domain","locations":[{"end":475,"score":3.400000044097214e-16,"start":373}],"model":"PF11799","name":"impB/mucB/samB family C-terminal domain"},{"dbname":"PROFILE","evidence":"PrfScan","id":"PS50173","interpro_id":"IPR001126","interpro_name":"UmuC domain","interpro_type":"Domain","locations":[{"end":316,"score":0.0,"start":132}],"model":"PS50173","name":"UmuC domain profile"},{"dbname":"PROFILE","evidence":"PrfScan","id":"PS51908","interpro_id":"IPR006642","interpro_name":"Rad18, zinc finger UBZ4-type","interpro_type":"Domain","locations":[{"end":518,"score":0.0,"start":489}],"model":"PS51908","name":"Zinc finger UBZ4-type profile"},{"dbname":"PANTHER","evidence":"HMMPfam","id":"PTHR11076","interpro_id":"IPR050116","interpro_name":"DNA polymerase type-Y","interpro_type":"Family","locations":[{"end":476,"score":0.0,"start":41}],"model":"PTHR11076:SF33","name":"DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER"},{"dbname":"SSF","evidence":"HMMPfam","id":"SSF100879","interpro_id":"IPR036775","interpro_name":"DNA polymerase, Y-family, little finger domain superfamily","interpro_type":"Homologous_superfamily","locations":[{"end":471,"score":3.9199998756008484e-20,"start":372}],"model":"0039801","name":"Lesion bypass DNA polymerase (Y-family), little finger domain"},{"dbname":"SSF","evidence":"HMMPfam","id":"SSF56672","interpro_id":"IPR043502","interpro_name":"DNA/RNA polymerase superfamily","interpro_type":"Homologous_superfamily","locations":[{"end":363,"score":0.0,"start":108}],"model":"0043914","name":"DNA/RNA polymerases"},{"dbname":"CDD","evidence":"RPS-BLAST","id":"cd03586","interpro_id":"IPR022880","interpro_name":"DNA polymerase IV","interpro_type":"Family","locations":[{"end":471,"score":0.0,"start":133}],"model":"cd03586","name":"DNA Polymerase IV/Kappa"}],"name":"kpa1","ortholog_annotations":[{"gene_uniquename":"SPCC553.07c","ortholog_taxonid":4897,"ortholog_uniquename":"SJAG_04089","reference_uniquename":"PMID:21511999"}],"product":"DinB translesion DNA repair polymerase, pol kappa","references_by_uniquename":{"PMID:21511999":null},"taxonid":4896,"taxonomic_distribution":"not curated","transcript_so_termid":null,"uniprot_identifier":"O74944","uniquename":"SPCC553.07c"}


id: SPCC553.08c
data:
  {"cv_annotations":{},"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"gene","flags":["not_load_organism"],"genes_by_uniquename":{"SJAG_02171":null,"SPCC553.08c":null},"has_protein_features":false,"interpro_matches":[{"dbname":"CATHGENE3D","evidence":"HMMPfam","id":"G3DSA:2.40.30.10","interpro_id":"","interpro_name":"","interpro_type":"","locations":[{"end":557,"score":3.8000005379005735e-39,"start":354}],"model":"1vx4404","name":"Translation factors"},{"dbname":"CATHGENE3D","evidence":"HMMPfam","id":"G3DSA:3.30.230.10","interpro_id":"IPR014721","interpro_name":"Small ribosomal subunit protein uS5 domain 2-type fold, 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id: SPCC553.09c
data:
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id: SPCC553.10
data:
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id: SPCC553.11c
data:
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id: SPCC553.12c
data:
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id: SPCC569.01c
data:
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id: SPCC569.02c
data:
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id: SPCC569.03
data:
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id: SPCC569.04
data:
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id: SPCC569.05c
data:
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id: SPCC569.06
data:
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id: SPCC569.07
data:
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id: SPCC569.08c
data:
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id: SPCC569.09
data:
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id: SPCC576.01c
data:
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id: SPCC576.02
data:
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id: SPCC576.03c
data:
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id: SPCC576.04
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id: SPCC576.05
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id: SPCC576.06c
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id: SPCC576.07
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id: SPCC576.08c
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id: SPCC576.09
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id: SPCC576.10c
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id: SPCC576.11
data:
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id: SPCC576.12c
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id: SPCC576.13
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id: SPCC576.14
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id: SPCC576.15c
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id: SPCC576.17c
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id: SPCC576.19c
data:
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id: SPCC584.01c
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id: SPCC584.02
data:
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id: SPCC584.03c
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id: SPCC584.04
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id: SPCC584.05
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id: SPCC584.11c
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id: SPCC584.12
data:
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id: SPCC584.13
data:
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id: SPCC584.14
data:
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id: SPCC584.15c
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id: SPCC584.16c
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id: SPCC594.01
data:
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id: SPCC594.02c
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id: SPCC594.03
data:
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id: SPCC594.04c
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id: SPCC594.05c
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id: SPCC594.06c
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id: SPCC594.07c
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id: SPCC5E4.03c
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id: SPCC5E4.04
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id: SPCC5E4.05c
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id: SPCC5E4.06
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id: SPCC5E4.07
data:
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id: SPCC5E4.10c
data:
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id: SPCC61.01c
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id: SPCC61.02
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id: SPCC61.03
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id: SPCC61.04c
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id: SPCC61.05
data:
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id: SPCC613.01
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id: SPCC613.02
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id: SPCC613.03
data:
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id: SPCC613.04c
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id: SPCC613.05c
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id: SPCC613.06
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id: SPCC613.07
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id: SPCC613.08
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id: SPCC613.09
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id: SPCC613.10
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id: SPCC613.11c
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id: SPCC613.12c
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id: SPCC622.01c
data:
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id: SPCC622.02
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id: SPCC622.03c
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id: SPCC622.04
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id: SPCC622.06c
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id: SPCC622.07
data:
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id: SPCC622.08c
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id: SPCC622.09
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id: SPCC622.10c
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id: SPCC622.11
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id: SPCC622.12c
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id: SPCC622.13c
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id: SPCC622.14
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id: SPCC622.15c
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id: SPCC622.16c
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id: SPCC622.17
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id: SPCC622.18
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id: SPCC622.19
data:
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id: SPCC63.02c
data:
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id: SPCC63.03
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id: SPCC63.04
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id: SPCC63.05
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id: SPCC63.06
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id: SPCC63.07
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id: SPCC63.08c
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id: SPCC63.10c
data:
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id: SPCC63.11
data:
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id: SPCC63.12c
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id: SPCC63.13
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id: SPCC63.14
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id: SPCC645.02
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id: SPCC645.03c
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id: SPCC645.04
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id: SPCC645.05c
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id: SPCC645.06c
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id: SPCC645.07
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id: SPCC645.08c
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id: SPCC645.09
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id: SPCC645.10
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id: SPCC645.11c
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id: SPCC645.12c
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id: SPCC645.13
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id: SPCC645.14c
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id: SPCC663.01c
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id: SPCC663.02
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id: SPCC663.03
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id: SPCC663.04
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id: SPCC663.05c
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id: SPCC663.06c
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id: SPCC663.08c
data:
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id: SPCC663.09c
data:
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id: SPCC663.10
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id: SPCC663.11
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id: SPCC663.12
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id: SPCC663.13c
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id: SPCC663.14c
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id: SPCC663.15c
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id: SPCC663.17
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id: SPCC663.18
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id: SPCC70.02c
data:
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id: SPCC70.03c
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id: SPCC70.04c
data:
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id: SPCC70.05c
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id: SPCC70.06
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id: SPCC70.07c
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id: SPCC70.08c
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id: SPCC70.09c
data:
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id: SPCC70.10
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id: SPCC70.12c
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id: SPCC736.02
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id: SPCC736.03c
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id: SPCC736.04c
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id: SPCC736.05
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id: SPCC736.06
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id: SPCC736.07c
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id: SPCC736.08
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id: SPCC736.09c
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id: SPCC736.10c
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id: SPCC736.11
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id: SPCC736.12c
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id: SPCC736.13
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id: SPCC736.14
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id: SPCC736.15
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id: SPCC737.02c
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id: SPCC737.03c
data:
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id: SPCC737.04
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id: SPCC737.05
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id: SPCC737.06c
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id: SPCC737.07c
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id: SPCC737.08
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id: SPCC737.09c
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id: SPCC74.01
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id: SPCC74.02c
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id: SPCC74.03c
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id: SPCC74.04
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id: SPCC74.05
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id: SPCC74.06
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id: SPCC74.09
data:
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