# terms

id: PBO:0056675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myocyte enhancer factor 2A","termid":"PBO:0056675"}


id: GO:1904918
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of L-histidine from the lysosomal lumen across the lysosomal membrane and into the cytosol.","definition_xrefs":["GOC:kmv","GO_REF:0000078","GOC:TermGenie","PMID:22822152"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysosomal transport","termid":"GO:0007041"},{"relation_name":"is_a","term_name":"amino acid transmembrane export from vacuole","termid":"GO:0032974"},{"relation_name":"is_a","term_name":"L-histidine transmembrane transport","termid":"GO:0089709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"transmembrane L-histidine transport from lysosomal lumen to cytosol","termid":"GO:1904918"}


id: GO:2000782
data:
  {"annotated_genes":["SJAG_02536","SJAG_04522"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103711,112683],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000784"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of establishment of cell polarity regulating cell shape.","definition_xrefs":["GOC:Mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of establishment of cell polarity","termid":"GO:2000114"},{"relation_name":"is_a","term_name":"regulation of establishment or maintenance of cell polarity regulating cell shape","termid":"GO:2000769"},{"relation_name":"regulates","term_name":"establishment of cell polarity regulating cell shape","termid":"GO:0071964"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02536":null,"SJAG_04522":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007163"}],"interesting_parent_ids":["GO:0008150","GO:0007163"],"is_obsolete":false,"name":"regulation of establishment of cell polarity regulating cell shape","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:2000782","terms_by_termid":{"GO:2000784":null}}


id: GO:0072051
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the juxtaglomerular apparatus over time, from its formation to the mature structure. The juxtaglomerular apparatus is an anatomical structure that lies adjacent to the glomerulus and regulates kidney function.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"kidney development","termid":"GO:0001822"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"juxtaglomerular apparatus development","termid":"GO:0072051"}


id: PBO:0004129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-binding protein associated factor Mot1 (predicted)","termid":"PBO:0004129"}


id: PBO:0056332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase kinase kinase 13","termid":"PBO:0056332"}


id: PBO:0001893
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ammecr1","termid":"PBO:0001893"}


id: PBO:0077636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin related transmembrane protein 2","termid":"PBO:0077636"}


id: GO:0018095
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of one or more alpha-linked glutamyl units to the gamma carboxyl group of peptidyl-glutamic acid.","definition_xrefs":["RESID:AA0202"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-glutamic acid modification","termid":"GO:0018200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein polyglutamylation","termid":"GO:0018095"}


id: PBO:0088878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial respiratory chain complex III assembly protein Cbp3","termid":"PBO:0088878"}


id: GO:0019185
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that recognizes the proximal sequence element of RNA polymerase II and III snRNA promoters.","definition_xrefs":["PMID:7715707","PMID:9003788"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription regulator complex","termid":"GO:0005667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"snRNA-activating protein complex","synonyms":[{"name":"SNAPc","type":"exact"}],"termid":"GO:0019185"}


id: GO:0051470
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of ectoine across a membrane by means of some agent such as a transporter or a pore. Ectoine (1,4,5,6-tetrahydro-2-methyl-4-pyrimidinecarboxylic acid) is a tetrahydropyrimidine commonly synthesized by halophilic bacteria.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transport","termid":"GO:0015718"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085","GO:0051179"],"is_obsolete":false,"name":"ectoine transmembrane transport","synonyms":[{"name":"ectoine transport","type":"related"}],"termid":"GO:0051470"}


id: PBO:0083854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; predicted to contain RNA binding domains; mutations in the human ortholog, EXOSC2, cause SHRF (Short stature, Hearing loss, Retinitis pigmentosa and distinctive Facies) syndrome, an RNA exosomopathy","termid":"PBO:0083854"}


id: FYPO:0006234
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cell growth is increased relative to normal in a medium containing gluconate as the carbon source.","definition_xrefs":["PomBase:al","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased vegetative cell population growth","termid":"FYPO:0004557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002057","FYPO:0000139","FYPO:0001985","FYPO:0000003","FYPO:0002058"],"is_obsolete":false,"name":"increased cell population growth on gluconate carbon source","synonyms":[{"name":"increased growth on gluconate carbon source","type":"broad"},{"name":"increased vegetative cell growth on gluconate carbon source","type":"exact"}],"termid":"FYPO:0006234"}


id: GO:0016310
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphate-containing compound metabolic process","termid":"GO:0006796"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phosphorylation","secondary_identifiers":["Wikipedia:Phosphorylation"],"termid":"GO:0016310"}


id: GO:0071838
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of cells, resulting in the expansion of a cell population in the bone marrow.","definition_xrefs":["GOC:mah","GOC:yaf","PMID:17063141"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population proliferation","termid":"GO:0008283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell proliferation in bone marrow","synonyms":[{"name":"bone marrow cell proliferation","type":"exact"}],"termid":"GO:0071838"}


id: PBO:0049151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione peroxidase 8 (putative)","termid":"PBO:0049151"}


id: PBO:0031650
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_G1_phase_progression","termid":"PBO:0031650"}


id: MOD:00475
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tyrosine residue to 2-amino-L-tyrosine.","definition_xrefs":["PubMed:9252331","PubMed:8839040","Unimod:342#Y"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"},{"relation_name":"is_a","term_name":"aminated residue","termid":"MOD:02039"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-amino-L-tyrosine","synonyms":[{"name":"Amino","type":"related"},{"name":"Tyrosine oxidation to 2-aminotyrosine","type":"related"}],"termid":"MOD:00475"}


id: GO:1901105
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of tetracenomycin C.","definition_xrefs":["GOC:yaf","UniPathway:UPA00174","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyketide catabolic process","termid":"GO:0030640"},{"relation_name":"is_a","term_name":"ketone catabolic process","termid":"GO:0042182"},{"relation_name":"is_a","term_name":"alcohol catabolic process","termid":"GO:0046164"},{"relation_name":"is_a","term_name":"tetracenomycin C metabolic process","termid":"GO:1901104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0044281","GO:0019748"],"is_obsolete":false,"name":"tetracenomycin C catabolic process","synonyms":[{"name":"tetracenomycin C breakdown","type":"exact"},{"name":"tetracenomycin C catabolism","type":"exact"},{"name":"tetracenomycin C degradation","type":"exact"}],"termid":"GO:1901105"}


id: PBO:0053110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LCMT1 antisense RNA 1","termid":"PBO:0053110"}


id: PBO:0111904
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LEMD3 domain","termid":"PBO:0111904"}


id: PBO:0043748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COX7B pseudogene 2","termid":"PBO:0043748"}


id: PBO:0000372
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"constitutive","termid":"PBO:0000372"}


id: PBO:0003084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"single-stranded telomeric binding protein Tgc1","termid":"PBO:0003084"}


id: PBO:0038789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosine deaminase domain containing 1","termid":"PBO:0038789"}


id: PBO:0080830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YAP1 pseudogene 1","termid":"PBO:0080830"}


id: FYPO:0008140
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An abnormal nuclear envelope morpbology in the vegetative growth phase of the life cycle in which the nuclear envelope lumen is larger than normal.","definition_xrefs":["PMID:11839792"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear envelope morphology during vegetative growth","termid":"FYPO:0000769"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002403"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0002403"],"is_obsolete":false,"name":"dilated nuclear envelope lumen","termid":"FYPO:0008140"}


id: GO:0072533
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the meta-hydroxylation of any of the three phenolic rings on tricoumaroyl spermidine or any of its mono- or dicaffeoyl spermidine derivatives.","definition_xrefs":["GOC:kad","PMID:19779199"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"tri-(coumaroyl or caffeoyl) spermidine meta-hydroxylase activity","termid":"GO:0072533"}


id: PBO:0084485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meiosis-specific MAPK inhibitor; binds Smk1p during meiosis I; links APC/C-Ama1 to Smk1p activation; required for sporulation; transcript is induced 7.5 hr after induction of meiosis; Isc10p is ubiquitylated and degraded in an Ama1p-dependent manner upon completion of meiosis II","termid":"PBO:0084485"}


id: PBO:0031563
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_DNA_binding","termid":"PBO:0031563"}


id: GO:0048295
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of isotype switching to IgE isotypes.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of isotype switching","termid":"GO:0045830"},{"relation_name":"is_a","term_name":"regulation of isotype switching to IgE isotypes","termid":"GO:0048293"},{"relation_name":"positively_regulates","term_name":"isotype switching to IgE isotypes","termid":"GO:0048289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0006310"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0006310"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0006310","GO:0010467"],"is_obsolete":false,"name":"positive regulation of isotype switching to IgE isotypes","synonyms":[{"name":"activation of isotype switching to IgE isotypes","type":"narrow"},{"name":"positive regulation of class switch recombination to IgE isotypes","type":"exact"},{"name":"positive regulation of class switching to IgE isotypes","type":"exact"},{"name":"positive regulation of isotype switch recombination to IgE isotypes","type":"exact"},{"name":"stimulation of isotype switching to IgE isotypes","type":"narrow"},{"name":"up regulation of isotype switching to IgE isotypes","type":"exact"},{"name":"up-regulation of isotype switching to IgE isotypes","type":"exact"},{"name":"upregulation of isotype switching to IgE isotypes","type":"exact"}],"termid":"GO:0048295"}


id: PBO:0053029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysosomal protein transmembrane 4 beta","termid":"PBO:0053029"}


id: PBO:0068603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 54, pseudogene","termid":"PBO:0068603"}


id: GO:0017156
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell, induced by a rise in cytosolic calcium-ion levels.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulated exocytosis","termid":"GO:0045055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"calcium-ion regulated exocytosis","synonyms":[{"name":"calcium ion-dependent exocytosis","type":"exact"}],"termid":"GO:0017156"}


id: PBO:0004792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase Cwf10 (predicted)","termid":"PBO:0004792"}


id: PBO:0056175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAF1 homolog, negative regulator of RNA polymerase III","termid":"PBO:0056175"}


id: GO:0015009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving corrin, C19H22N4, the fundamental heterocyclic skeleton of the corrinoids. It consists of four reduced pyrrole rings joined into a macrocyclic ring. Corrin is the core of the vitamin B12 molecule.","definition_xrefs":["ISBN:0198506732","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tetrapyrrole metabolic process","termid":"GO:0033013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"corrin metabolic process","synonyms":[{"name":"corrin metabolism","type":"exact"}],"termid":"GO:0015009"}


id: PBO:0080971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 8 opposite strand","termid":"PBO:0080971"}


id: MOD:00591
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:271","PubMed:15549660"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophilic addition to cytopiloyne+H2O","synonyms":[{"name":"Cytopiloyne+water","type":"related"},{"name":"nucleophilic addition to cytopiloyne+H2O","type":"related"}],"termid":"MOD:00591"}


id: PBO:0053298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIM zinc finger domain containing 4","termid":"PBO:0053298"}


id: PR:Q9C0Y6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An NADPH-dependent curcumin reductase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01239","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc-type alcohol dehydrogenase-like protein PB24D3.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB24D3.08c","secondary_identifiers":["UniProtKB:Q9C0Y6"],"synonyms":[{"name":"Spom972h-curA","type":"exact"}],"termid":"PR:Q9C0Y6"}


id: PR:Q9UTB0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC25B8.08 gene.","definition_xrefs":["UniProtKB:Q9UTB0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dilute domain-containing protein C25B8.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25B8.08","synonyms":[{"name":"Spom972h-SPAC25B8.08","type":"exact"}],"termid":"PR:Q9UTB0"}


id: PBO:0045618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 29 (pseudogene)","termid":"PBO:0045618"}


id: PBO:0039244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALDH1A3 antisense RNA 1","termid":"PBO:0039244"}


id: GO:0009508
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A circular DNA molecule containing plastid encoded genes.","definition_xrefs":["ISBN:0943088399"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome","termid":"GO:0005694"},{"relation_name":"part_of","term_name":"plastid nucleoid","termid":"GO:0042646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0005694"],"is_obsolete":false,"name":"plastid chromosome","termid":"GO:0009508"}


id: GO:0051281
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of release of sequestered calcium ion into cytosol","termid":"GO:0051279"},{"relation_name":"is_a","term_name":"positive regulation of calcium ion transmembrane transport","termid":"GO:1904427"},{"relation_name":"positively_regulates","term_name":"release of sequestered calcium ion into cytosol","termid":"GO:0051209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"positive regulation of release of sequestered calcium ion into cytosol","synonyms":[{"name":"activation of release of sequestered calcium ion into cytosol","type":"narrow"},{"name":"positive regulation of calcium ion (Ca2+) mobilization","type":"broad"},{"name":"positive regulation of calcium mobilization","type":"broad"},{"name":"positive regulation of cytoplasmic release of sequestered calcium ion (Ca2+)","type":"broad"},{"name":"positive regulation of cytoplasmic release of stored calcium ion (Ca2+)","type":"broad"},{"name":"positive regulation of cytosolic release of sequestered calcium ion (Ca2+)","type":"exact"},{"name":"positive regulation of cytosolic release of stored calcium ion (Ca2+)","type":"exact"},{"name":"positive regulation of release of sequestered calcium ion (Ca2+)","type":"broad"},{"name":"positive regulation of release of sequestered calcium ion into cytoplasm","type":"broad"},{"name":"positive regulation of release of stored calcium ion (Ca2+)","type":"broad"},{"name":"positive regulation of release of stored calcium ion (Ca2+) into cytoplasm","type":"broad"},{"name":"positive regulation of release of stored calcium ion (Ca2+) into cytosol","type":"exact"},{"name":"stimulation of release of sequestered calcium ion into cytosol","type":"narrow"},{"name":"up regulation of release of sequestered calcium ion into cytosol","type":"exact"},{"name":"up-regulation of release of sequestered calcium ion into cytosol","type":"exact"},{"name":"upregulation of release of sequestered calcium ion into cytosol","type":"exact"}],"termid":"GO:0051281"}


id: GO:0140718
data:
  {"annotated_genes":["SJAG_01599","SJAG_03982","SJAG_02778","SJAG_02622","SJAG_03664","SJAG_04574","SJAG_04186","SJAG_04768","SJAG_01075","SJAG_03624","SJAG_00883","SJAG_02382","SJAG_01579","SJAG_03997","SJAG_02723","SJAG_03844","SJAG_00769","SJAG_02401","SJAG_01867","SJAG_01331","SJAG_00934"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90182,99328],"is_not":false,"summary":null,"term":"GO:0140718"},{"annotations":[102743],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0061188"},{"annotations":[103330,110516,104260,108205,100196,109397,88174],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000183"},{"annotations":[87963,93305,96404,114182,113826],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1902801"},{"annotations":[100295,106583,108207,112634,83632,86906,114185],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902794"},{"annotations":[102390],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902795"}]},"cv_name":"biological_process","definition":"The compaction of chromatin into a conformation that is refactory to transcription but that be converted to euchromatin and allow transcription in specific contexts. These can be temporal (e.g., developmental states or specific cell-cycle stages), spatial (e.g., nuclear localization changes from the center to the periphery or vice versa due to exogenous factors/signals), or parental/heritable (e.g., monoallelic gene expression).","definition_xrefs":["PMID:17936700"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterochromatin formation","termid":"GO:0031507"}],"gene_count":21,"genes_by_uniquename":{"SJAG_00769":null,"SJAG_00883":null,"SJAG_00934":null,"SJAG_01075":null,"SJAG_01331":null,"SJAG_01579":null,"SJAG_01599":null,"SJAG_01867":null,"SJAG_02382":null,"SJAG_02401":null,"SJAG_02622":null,"SJAG_02723":null,"SJAG_02778":null,"SJAG_03624":null,"SJAG_03664":null,"SJAG_03844":null,"SJAG_03982":null,"SJAG_03997":null,"SJAG_04186":null,"SJAG_04574":null,"SJAG_04768":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0006325","GO:0010467"],"is_obsolete":false,"name":"facultative heterochromatin formation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"fHC assembly","type":"exact"},{"name":"facultative heterochromatin assembly","type":"exact"}],"termid":"GO:0140718","terms_by_termid":{"GO:0000183":null,"GO:0061188":null,"GO:0140718":null,"GO:1902794":null,"GO:1902795":null,"GO:1902801":null}}


id: PBO:0040289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP1B3 antisense RNA 1","termid":"PBO:0040289"}


id: GO:0016157
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an NDP-alpha-D-glucose + D-fructose = a ribonucleoside 5'-diphosphate + H+ + sucrose. The phosphate acceptor can be UDP or ADP.","definition_xrefs":["RHEA:16241"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016757","GO:0003674"],"is_obsolete":false,"name":"sucrose synthase activity","secondary_identifiers":["MetaCyc:SUCROSE-SYNTHASE-RXN","EC:2.4.1.13"],"synonyms":[{"name":"NDP-glucose:D-fructose 2-alpha-D-glucosyltransferase activity","type":"related"},{"name":"UDP-glucose-fructose glucosyltransferase activity","type":"related"},{"name":"UDPglucose-fructose glucosyltransferase activity","type":"related"},{"name":"sucrose synthetase activity","type":"related"},{"name":"sucrose-UDP glucosyltransferase activity","type":"related"},{"name":"sucrose-uridine diphosphate glucosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucose-fructose glucosyltransferase activity","type":"related"}],"termid":"GO:0016157"}


id: PBO:0053431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 376","termid":"PBO:0053431"}


id: PBO:0078040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 30","termid":"PBO:0078040"}


id: PBO:0070050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 7, pseudogene","termid":"PBO:0070050"}


id: PBO:0046275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"essential meiotic structure-specific endonuclease subunit 2","termid":"PBO:0046275"}


id: GO:0044692
data:
  {"annotated_genes":["SJAG_00686","SJAG_04682"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[85824,100999],"is_not":false,"summary":null,"term":"GO:0044692"}]},"cv_name":"molecular_function","definition":"Binds to and increases the activity of an exoribonuclease.","definition_xrefs":["GOC:rb","PMID:22570495"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonuclease activator activity","termid":"GO:0170054"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00686":null,"SJAG_04682":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030234"}],"interesting_parent_ids":["GO:0140677","GO:0003674","GO:0030234","GO:0098772"],"is_obsolete":false,"name":"exoribonuclease activator activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0044692","terms_by_termid":{"GO:0044692":null}}


id: PBO:0002036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S4 (predicted)","termid":"PBO:0002036"}


id: PBO:0050104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1 pseudogene 14","termid":"PBO:0050104"}


id: PBO:0026824
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_sodium_export","termid":"PBO:0026824"}


id: PBO:0027646
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_BE49385A","termid":"PBO:0027646"}


id: PBO:0068324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 25","termid":"PBO:0068324"}


id: PBO:0054887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2301","termid":"PBO:0054887"}


id: PBO:0002656
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DiGeorge syndrome","termid":"PBO:0002656"}


id: PBO:0046077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4A1 pseudogene 2","termid":"PBO:0046077"}


id: PBO:0070109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 23 pseudogene","termid":"PBO:0070109"}


id: PBO:0078628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 77B, pseudogene","termid":"PBO:0078628"}


id: PBO:0071012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 14","termid":"PBO:0071012"}


id: GO:0017102
data:
  {"annotated_genes":["SJAG_01159","SJAG_03277","SJAG_02263"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[86437,92192,101286],"is_not":false,"summary":null,"term":"GO:0017102"}]},"cv_name":"cellular_component","definition":"A complex consisting of methionyl- and glutamyl-tRNA synthetases. The tRNA synthetases present in the complex bind to their cognate tRNAs more efficiently than they do as monomers.","definition_xrefs":["PMID:11069915","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01159":null,"SJAG_02263":null,"SJAG_03277":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"methionyl glutamyl tRNA synthetase complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0017102","terms_by_termid":{"GO:0017102":null}}


id: GO:0102084
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: L-dopa + S-adenosyl-L-methionine = 3-O-methyldopa + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete L-dopa O-methyltransferase activity (obsolete GO:0102084)","termid":"GO:0102084"}


id: GO:0010160
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regionalization process that specifies animal organ primordium boundaries resulting in a restriction of organogenesis to a limited spatial domain and keeping the organ separate from surrounding tissues.","definition_xrefs":["GOC:dph","GOC:isa_complete","PMID:9611175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regionalization","termid":"GO:0003002"},{"relation_name":"is_a","term_name":"formation of anatomical boundary","termid":"GO:0048859"},{"relation_name":"part_of","term_name":"animal organ formation","termid":"GO:0048645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"formation of animal organ boundary","secondary_identifiers":["GO:0048862"],"synonyms":[{"name":"organ boundary specification","type":"exact"}],"termid":"GO:0010160"}


id: PBO:0044207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cathepsin L pseudogene 6","termid":"PBO:0044207"}


id: GO:0016688
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-ascorbate + hydrogen peroxide = dehydroascorbate + 2 H2O.","definition_xrefs":["EC:1.11.1.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peroxidase activity","termid":"GO:0004601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"L-ascorbate peroxidase activity","secondary_identifiers":["MetaCyc:RXN-12440","RHEA:22996"],"synonyms":[{"name":"L-ascorbate:hydrogen-peroxide oxidoreductase activity","type":"related"},{"name":"L-ascorbic acid peroxidase activity","type":"related"},{"name":"L-ascorbic acid-specific peroxidase activity","type":"related"},{"name":"ascorbate peroxidase activity","type":"related"},{"name":"ascorbic acid peroxidase activity","type":"related"}],"termid":"GO:0016688"}


id: PBO:0057278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 500a","termid":"PBO:0057278"}


id: GO:0021690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellar molecular layer to attain its fully functional state. The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells.","definition_xrefs":["GO_REF:0000021","GOC:cls","GOC:dgh","GOC:jid","ISBN:0838580343","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure maturation","termid":"GO:0071695"},{"relation_name":"part_of","term_name":"cerebellar molecular layer development","termid":"GO:0021679"},{"relation_name":"part_of","term_name":"cerebellar cortex maturation","termid":"GO:0021699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellar molecular layer maturation","termid":"GO:0021690"}


id: SO:0001662
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A TATA box core promoter of a gene transcribed by RNA polymerase III.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TATA_box","termid":"SO:0000174"},{"relation_name":"part_of","term_name":"RNApol_III_promoter","termid":"SO:0000171"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA_polymerase_III_TATA_box","synonyms":[{"name":"RNA polymerase III TATA box","type":"exact"}],"termid":"SO:0001662"}


id: GO:0042926
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the directed movement of 3-hydroxyphenylpropionic acid from one side of a membrane to the other.","definition_xrefs":["PMID:9098055","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transmembrane transporter activity","termid":"GO:0008028"},{"relation_name":"is_a","term_name":"xenobiotic transmembrane transporter activity","termid":"GO:0042910"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"3-hydroxyphenylpropionic acid transmembrane transporter activity","synonyms":[{"name":"3-(3-hydroxyphenyl)propionic acid transporter activity","type":"exact"},{"name":"3-hydroxyphenylpropionic acid transporter activity","type":"related"},{"name":"m-hydroxyphenylpropionic acid transporter activity","type":"exact"}],"termid":"GO:0042926"}


id: PBO:0047708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"formin like 2","termid":"PBO:0047708"}


id: GO:0061288
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regionalization process in which the identity of the mesonephric capsule is specified. Identity is considered to be the aggregate of characteristics by which a structure is recognized.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pattern specification involved in mesonephros development","termid":"GO:0061227"},{"relation_name":"is_a","term_name":"renal capsule specification","termid":"GO:0072130"},{"relation_name":"part_of","term_name":"mesonephric capsule formation","termid":"GO:0061287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric capsule specification","termid":"GO:0061288"}


id: PBO:0000102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-coding RNA, poly(A)-bearing RNA (predicted)","termid":"PBO:0000102"}


id: PBO:0077692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNFAIP3 interacting protein 3","termid":"PBO:0077692"}


id: PBO:0005531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfite reductase NADPH flavoprotein subunit (predicted)","termid":"PBO:0005531"}


id: MOD:00492
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that crosslinks the N6-amino of a peptidyl lysine with the carboxyl of glycylglycine, the two glycine residues left after tryptic digestion of ubiquitin.","definition_xrefs":["RESID:AA0125#var","Unimod:121#K","PubMed:12612601","PubMed:11125103","PubMed:12872131","OMSSA:52"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"ubiquitinylated lysine","termid":"MOD:01148"},{"relation_name":"is_a","term_name":"N6-acylated L-lysine","termid":"MOD:01875"},{"relation_name":"is_a","term_name":"crosslinked glycine residue","termid":"MOD:02047"},{"relation_name":"is_a","term_name":"crosslinked L-lysine residue","termid":"MOD:02051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"ubiquitination signature dipeptidyl lysine","synonyms":[{"name":"GlyGly","type":"related"},{"name":"N6-(glycylglycyl)lysine","type":"exact"},{"name":"N6-glycylglycyl-L-lysine","type":"exact"},{"name":"glyglyk","type":"exact"},{"name":"ubiquitinylation residue","type":"related"}],"termid":"MOD:00492"}


id: PBO:0058032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4253","termid":"PBO:0058032"}


id: PBO:0016906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Meu31","termid":"PBO:0016906"}


id: GO:0006643
data:
  {"annotated_genes":["SJAG_04924","SJAG_01570","SJAG_02804","SJAG_05219","SJAG_06425","SJAG_03878","SJAG_02842","SJAG_04986","SJAG_00176","SJAG_03066","SJAG_02085","SJAG_03292","SJAG_01860","SJAG_05327","SJAG_05278","SJAG_05311","SJAG_03506","SJAG_02488","SJAG_06383","SJAG_02913","SJAG_00506","SJAG_00831","SJAG_03953","SJAG_04878","SJAG_04107","SJAG_01300","SJAG_02590","SJAG_00295","SJAG_04913","SJAG_02305","SJAG_01857","SJAG_04550","SJAG_04337","SJAG_02523","SJAG_04975","SJAG_03076","SJAG_01416","SJAG_01356","SJAG_00846","SJAG_01057","SJAG_04578","SJAG_04881","SJAG_01219","SJAG_04178","SJAG_03672","SJAG_00519","SJAG_01227","SJAG_02706","SJAG_00068","SJAG_02168","SJAG_00261","SJAG_03801","SJAG_02903","SJAG_04119","SJAG_03115","SJAG_02056","SJAG_02885","SJAG_03690","SJAG_00880","SJAG_02429","SJAG_02776","SJAG_03015","SJAG_04165"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106557],"is_not":false,"summary":null,"term":"GO:0006643"},{"annotations":[110877],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006666"},{"annotations":[83574,87500,88324,110045,99815],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0016255"},{"annotations":[88003,105810,104912,88875,101625,106167],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046513"},{"annotations":[98260],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006672"},{"annotations":[102812,103646,113318,94215,110878,108455,94970,94763,99878,89631,85673,106023,112229,96327,96393,97704,85054,87327,89176,84787,90618,92533,99141,104679,107694,111303,89085],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006506"},{"annotations":[91247,93611],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006673"},{"annotations":[91842,87904,86849,91357,108634],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051999"},{"annotations":[108635,87905],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006675"},{"annotations":[107000,96843],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046467"},{"annotations":[104913,85955],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046521"},{"annotations":[85627,91248,98262,105722,110879,101967,105811,108636,113593,96345,88044,86711,89653,93612,97514],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030148"},{"annotations":[97578],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006665"},{"annotations":[93772,102069,101626,105812,88876,93013],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046512"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving membrane lipids, any lipid found in or associated with a biological membrane.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular lipid metabolic process","termid":"GO:0044255"}],"gene_count":63,"genes_by_uniquename":{"SJAG_00068":null,"SJAG_00176":null,"SJAG_00261":null,"SJAG_00295":null,"SJAG_00506":null,"SJAG_00519":null,"SJAG_00831":null,"SJAG_00846":null,"SJAG_00880":null,"SJAG_01057":null,"SJAG_01219":null,"SJAG_01227":null,"SJAG_01300":null,"SJAG_01356":null,"SJAG_01416":null,"SJAG_01570":null,"SJAG_01857":null,"SJAG_01860":null,"SJAG_02056":null,"SJAG_02085":null,"SJAG_02168":null,"SJAG_02305":null,"SJAG_02429":null,"SJAG_02488":null,"SJAG_02523":null,"SJAG_02590":null,"SJAG_02706":null,"SJAG_02776":null,"SJAG_02804":null,"SJAG_02842":null,"SJAG_02885":null,"SJAG_02903":null,"SJAG_02913":null,"SJAG_03015":null,"SJAG_03066":null,"SJAG_03076":null,"SJAG_03115":null,"SJAG_03292":null,"SJAG_03506":null,"SJAG_03672":null,"SJAG_03690":null,"SJAG_03801":null,"SJAG_03878":null,"SJAG_03953":null,"SJAG_04107":null,"SJAG_04119":null,"SJAG_04165":null,"SJAG_04178":null,"SJAG_04337":null,"SJAG_04550":null,"SJAG_04578":null,"SJAG_04878":null,"SJAG_04881":null,"SJAG_04913":null,"SJAG_04924":null,"SJAG_04975":null,"SJAG_04986":null,"SJAG_05219":null,"SJAG_05278":null,"SJAG_05311":null,"SJAG_05327":null,"SJAG_06383":null,"SJAG_06425":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"membrane lipid metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"membrane lipid metabolism","type":"exact"}],"termid":"GO:0006643","terms_by_termid":{"GO:0006506":null,"GO:0006643":null,"GO:0006665":null,"GO:0006666":null,"GO:0006672":null,"GO:0006673":null,"GO:0006675":null,"GO:0016255":null,"GO:0030148":null,"GO:0046467":null,"GO:0046512":null,"GO:0046513":null,"GO:0046521":null,"GO:0051999":null}}


id: PATO:0001223
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001223 quantitative value (obsolete PATO:0001223)","termid":"PATO:0001223"}


id: GO:0048936
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Generation of a long process from a neuron whose cell body resides in the peripheral nervous system. The axon carries action potential from the cell body towards target cells.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axonogenesis","termid":"GO:0007409"},{"relation_name":"part_of","term_name":"peripheral nervous system neuron development","termid":"GO:0048935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peripheral nervous system neuron axonogenesis","termid":"GO:0048936"}


id: GO:1903980
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of microglial cell activation.","definition_xrefs":["GOC:BHF","GO_REF:0000058","GOC:nc","PMID:19100238","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of macrophage activation","termid":"GO:0043032"},{"relation_name":"is_a","term_name":"positive regulation of neuroinflammatory response","termid":"GO:0150078"},{"relation_name":"is_a","term_name":"regulation of microglial cell activation","termid":"GO:1903978"},{"relation_name":"positively_regulates","term_name":"microglial cell activation","termid":"GO:0001774"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of microglial cell activation","synonyms":[{"name":"activation of microglial cell activation","type":"narrow"},{"name":"up regulation of microglial cell activation","type":"exact"},{"name":"up-regulation of microglial cell activation","type":"exact"},{"name":"upregulation of microglial cell activation","type":"exact"}],"termid":"GO:1903980"}


id: GO:0001004
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Initiating the assembly of the RNA polymerase III pre-initiation complex by binding to a control sequence in the intragenic region. This allows to recruit TFIIIB to the DNA at a site centered approximately 26 base pairs upstream of the start site of transcription. For tRNA genes, TFIIIC first associates with DNA, and then recruits TFIIIB. For 5S rRNA genes, TFIIIA binds to DNA first, followed by TFIIIC, which then recruits TFIIIB.","definition_xrefs":["GOC:txnOH-2018","PMID:27911719","Wikipedia:RNA_polymerase_III","PMID:23063749","PMID:12381659"],"gene_count":0,"genotype_count":0,"name":"obsolete RNA polymerase III transcription regulator recruiting activity (obsolete GO:0001004)","synonyms":[{"name":"RNA polymerase III assembly factor activity","type":"related"},{"name":"RNA polymerase III assembly factor activity, TFIIIB recruiting","type":"related"},{"name":"RNA polymerase III hybrid type promoter TFIIIB recruiting transcription factor activity","type":"narrow"},{"name":"RNA polymerase III promoter sequence-specific DNA binding TFIIIB recruiting transcription factor activity","type":"narrow"},{"name":"RNA polymerase III transcription factor recruiting activity","type":"exact"},{"name":"RNA polymerase III type 1 promoter sequence-specific DNA binding TFIIIB recruiting transcription factor activity","type":"narrow"},{"name":"RNA polymerase III type 2 promoter sequence-specific DNA binding TFIIIB recruiting transcription factor activity","type":"narrow"},{"name":"RNA polymerase III type 3 promoter TFIIIB recruiting transcription factor activity","type":"narrow"},{"name":"SNAPc-type activity","type":"related"},{"name":"TFIIIA activity","type":"related"},{"name":"TFIIIC-type activity","type":"related"},{"name":"transcription factor activity, RNA polymerase III promoter sequence-specific binding, TFIIIB recruiting","type":"exact"},{"name":"transcription factor activity, RNA polymerase III type 1 promoter TFIIIB","type":"related"},{"name":"transcription factor activity, RNA polymerase III type 1 promoter sequence-specific binding, TFIIIB recruiting","type":"narrow"},{"name":"transcription factor activity, RNA polymerase III type 2 promoter sequence-specific binding, TFIIIB recruiting","type":"narrow"},{"name":"transcription factor activity, RNA polymerase III type 3 promoter TFIIIB recruiting","type":"narrow"},{"name":"type 2 RNA polymerase III promoter recognition","type":"narrow"},{"name":"type 3 RNA polymerase III promoter recognition","type":"narrow"}],"termid":"GO:0001004"}


id: PBO:0056798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MFN1 pseudogene 1","termid":"PBO:0056798"}


id: PBO:0108544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clr6 histone deacetylase complex MRG family subunit Alp13","termid":"PBO:0108544"}


id: RO:0002600
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Holds between a material entity c and a pathological process p if and only if c is capable of some activity a, where a negatively regulates p.","direct_ancestors":[{"relation_name":"is_a","term_name":"capable_of_positively_regulating","termid":"RO:0002598"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capable_of_upregulating_or_causing_pathological_process","termid":"RO:0002600"}


id: SO:0001337
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Methylwyosine is a modified guanosine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_guanosine","termid":"SO:0001276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylwyosine","secondary_identifiers":["RNAMOD:042"],"synonyms":[{"name":"mimG","type":"exact"}],"termid":"SO:0001337"}


id: MOD:00267
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively dioxygenates an L-cysteine residue to L-cysteine sulfinic acid.","definition_xrefs":["ChEBI:16345","OMSSA:162","PubMed:9252331","PubMed:9586994","PubMed:12686488","RESID:AA0262","Unimod:425#C"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur oxygenated L-cysteine","termid":"MOD:00708"},{"relation_name":"is_a","term_name":"sulfur dioxygenated residue","termid":"MOD:01855"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-cysteine sulfinic acid","synonyms":[{"name":"(2R)-2-amino-3-sulfinopropanoic acid","type":"exact"},{"name":"2-amino-2-carboxyethanesulfinic acid","type":"exact"},{"name":"2-amino-3-(dioxido-lambda(6)-sulfanyl)propanoic acid [tautomer]","type":"exact"},{"name":"2-amino-3-sulfonylpropanoic acid [tautomer]","type":"exact"},{"name":"3-sulfinoalanine","type":"exact"},{"name":"3-sulphinoalanine","type":"exact"},{"name":"CysO2H","type":"exact"},{"name":"Dioxidation","type":"related"},{"name":"L-cysteine sulfinic acid","type":"exact"},{"name":"MOD_RES Cysteine sulfinic acid (-SO2H)","type":"exact"},{"name":"S-cysteinesulfinic acid","type":"exact"},{"name":"S-sulfinocysteine","type":"exact"},{"name":"cysteine sulphinic acid","type":"exact"},{"name":"cysteine-S,S-dioxide [tautomer]","type":"exact"},{"name":"dihydroxy","type":"related"},{"name":"sulfinicacid","type":"exact"}],"termid":"MOD:00267"}


id: PBO:0065938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rac GTPase activating protein 1","termid":"PBO:0065938"}


id: GO:0060327
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The actin filament-based movement by which cytoplasmic actin filaments slide past one another resulting in a contraction that propels the cell from one place to another.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin-mediated cell contraction","termid":"GO:0070252"},{"relation_name":"part_of","term_name":"cell motility","termid":"GO:0048870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cytoplasmic actin-based contraction involved in cell motility","termid":"GO:0060327"}


id: PBO:0081915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 884, pseudogene","termid":"PBO:0081915"}


id: PBO:0046367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ENTPD3 antisense RNA 1","termid":"PBO:0046367"}


id: GO:0051546
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a keratinocyte, epidermal cells which synthesize keratin, from one site to another.","definition_xrefs":["ISBN:0721662544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell migration","termid":"GO:0010631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"keratinocyte migration","termid":"GO:0051546"}


id: PBO:0080270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 33 pseudogene","termid":"PBO:0080270"}


id: PBO:0029488
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_triglyceride_level","termid":"PBO:0029488"}


id: PBO:0044497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYFIP related Rac1 interactor A","termid":"PBO:0044497"}


id: PBO:0089749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gpl1-Gih35-Wdr83 complex RNA-binding subunit","termid":"PBO:0089749"}


id: GO:1905810
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of excitatory synapse pruning.","definition_xrefs":["GO_REF:0000058","PMID:27779093","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of synapse pruning","termid":"GO:1905806"},{"relation_name":"regulates","term_name":"excitatory synapse pruning","termid":"GO:1905805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of excitatory synapse pruning","synonyms":[{"name":"regulation of synapse clearance","type":"broad"},{"name":"regulation of synapse disassembly","type":"broad"},{"name":"regulation of synapse elimination","type":"broad"},{"name":"regulation of synapse removal","type":"broad"}],"termid":"GO:1905810"}


id: PR:000050546
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GTP-binding protein gtr2 (Schizosaccharomyces pombe) that is non-covalently bound to GTP.","definition_xrefs":["PPRO:DAN","PMID:27227887","PomBase:VW"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"},{"relation_name":"is_a","term_name":"GTP-binding protein gtr2 (Schizosaccharomyces pombe)","termid":"PR:000050544"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gtr2/GTP+","pombase_gene_id":"SPCC777.05","synonyms":[{"name":"PomBase_original_PRO_term_name: GTP-binding protein gtr2, GTP-bound form (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-gtr2/GTP+","type":"exact"},{"name":"gtr2/GTP+","type":"exact"},{"name":"Gtr2/GTP+","type":"exact"}],"termid":"PR:000050546"}


id: FYECO:0000101
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Any experimental condition specifying the physical texture of the growth medium.","definition_xrefs":["PomBase:al"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE FYECO:0000101 medium texture (obsolete FYECO:0000101)","termid":"FYECO:0000101"}


id: PBO:0040082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arylsulfatase D","termid":"PBO:0040082"}


id: PBO:0055881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 7","termid":"PBO:0055881"}


id: PBO:0086233
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that interacts with Rab GTPases; localized to late Golgi vesicles; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport","termid":"PBO:0086233"}


id: PBO:0091177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO deconjugating cysteine peptidase Ulp2","termid":"PBO:0091177"}


id: PBO:0044291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome X open reading frame 66","termid":"PBO:0044291"}


id: PBO:0016905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyogamy protein Tht2","termid":"PBO:0016905"}


id: FYPO:0001094
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of DNA binding at a replication origin by a gene product is normal (i.e. indistinguishable from wild type). The relevant gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal double-stranded DNA binding","termid":"FYPO:0007542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000653"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000653","FYPO:0000652"],"is_obsolete":false,"name":"normal DNA replication origin binding","synonyms":[{"name":"normal origin binding","type":"exact"}],"termid":"FYPO:0001094"}


id: GO:0097111
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum (ER)-Golgi intermediate compartment.","definition_xrefs":["GOC:br","PMID:18287528"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle organization","termid":"GO:0006996"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endoplasmic reticulum-Golgi intermediate compartment organization","synonyms":[{"name":"ER-Golgi intermediate compartment organization","type":"exact"},{"name":"ERGIC organization","type":"exact"},{"name":"endoplasmic reticulum-Golgi intermediate compartment organisation","type":"exact"},{"name":"endoplasmic reticulum-Golgi intermediate compartment organization and biogenesis","type":"related"}],"termid":"GO:0097111"}


id: PBO:0027354
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_pyruvate_decarboxylase_activity_during_stationary_phase","termid":"PBO:0027354"}


id: PR:O13992
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug56 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13992"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 56 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC26H5.11","synonyms":[{"name":"Spom972h-mug56","type":"exact"}],"termid":"PR:O13992"}


id: FYPO:0006844
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of the histone variant H2A.Z found associated with chromatin in centromeric regions is normal (i.e. indistinguishable from wild type) when the cell is in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah","PMID:28904333"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein level during vegetative growth","termid":"FYPO:0000833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal H2A.Z level at centromere","synonyms":[{"name":"normal H2A.Z level at centromere during mitotic cell cycle","type":"related"},{"name":"normal H2A.Z level at centromere during vegetative growth","type":"exact"},{"name":"normal H2A.Z level in chromatin at centromere","type":"exact"}],"termid":"FYPO:0006844"}


id: GO:0045669
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of osteoblast differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell differentiation","termid":"GO:0045597"},{"relation_name":"is_a","term_name":"regulation of osteoblast differentiation","termid":"GO:0045667"},{"relation_name":"positively_regulates","term_name":"osteoblast differentiation","termid":"GO:0001649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of osteoblast differentiation","synonyms":[{"name":"activation of osteoblast differentiation","type":"narrow"},{"name":"stimulation of osteoblast differentiation","type":"narrow"},{"name":"up regulation of osteoblast differentiation","type":"exact"},{"name":"up-regulation of osteoblast differentiation","type":"exact"},{"name":"upregulation of osteoblast differentiation","type":"exact"}],"termid":"GO:0045669"}


id: SO:0001309
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"2_methylthio_N6_hydroxynorvalyl_carbamoyladenosine is a modified adenosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_adenosine","termid":"SO:0001273"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine","secondary_identifiers":["RNAMOD:015"],"synonyms":[{"name":"2-methylthio-N6-hydroxynorvalyl carbamoyladenosine","type":"exact"},{"name":"ms2hn6A","type":"exact"},{"name":"two methylthio N6 hydroxynorvalyl carbamoyladenosine","type":"exact"}],"termid":"SO:0001309"}


id: MOD:01111
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a dimethoxybenzhydryl group for a hydrogen atom.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dimethoxybenzhydryl modified residue","synonyms":[{"name":"4,4'-dimethoxybenzhydryl","type":"exact"},{"name":"Mbh","type":"exact"},{"name":"bis(4-methoxyphenyl)methyl","type":"exact"}],"termid":"MOD:01111"}


id: FYPO:0007214
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at one or more heterochromatin islands is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to chromatin during vegetative growth","termid":"FYPO:0001508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to chromatin at heterochromatin island","synonyms":[{"name":"abolished protein localisation to chromatin at heterochromatin island during vegetative growth","type":"exact"},{"name":"abolished protein localization to chromatin at heterochromatin island during mitotic cell cycle","type":"related"},{"name":"protein localization to chromatin at heterochromatin island abolished","type":"exact"}],"termid":"FYPO:0007214"}


id: PBO:0058623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6755","termid":"PBO:0058623"}


id: FYPO:0001036
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the fungal-type cell wall is delaminated, i.e. one or more of its layers peels off.","definition_xrefs":["PomBase:al","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell wall morphology during vegetative growth","termid":"FYPO:0000351"},{"relation_name":"is_a","term_name":"delaminated cell wall","termid":"FYPO:0002948"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002946"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002946","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"delaminated cell wall during vegetative growth","synonyms":[{"name":"delaminate cell wall during vegetative growth","type":"exact"},{"name":"delaminated cell wall during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001036"}


id: GO:0021905
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the creation of the forebrain-midbrain boundary.","definition_xrefs":["GOC:jid","PMID:11262869","GOC:dgh","GO_REF:0000021","GOC:cls","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"is_a","term_name":"formation of anatomical boundary","termid":"GO:0048859"},{"relation_name":"part_of","term_name":"rostrocaudal neural tube patterning","termid":"GO:0021903"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"forebrain-midbrain boundary formation","termid":"GO:0021905"}


id: GO:0045239
data:
  {"annotated_genes":["SJAG_03163","SJAG_03813","SJAG_01524","SJAG_02464","SJAG_03290"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[106224,108165,83560],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045252"},{"annotations":[111060],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042709"},{"annotations":[86036],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009361"}]},"cv_name":"cellular_component","definition":"Any of the heteromeric enzymes that act in the TCA cycle.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01524":null,"SJAG_02464":null,"SJAG_03163":null,"SJAG_03290":null,"SJAG_03813":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"tricarboxylic acid cycle heteromeric enzyme complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"TCA cycle enzyme complex","type":"exact"}],"termid":"GO:0045239","terms_by_termid":{"GO:0009361":null,"GO:0042709":null,"GO:0045252":null}}


id: PBO:0060675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"necdin, MAGE family member","termid":"PBO:0060675"}


id: PR:Q9UTC6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An iron-sulfur cluster assembly enzyme ISCU, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00204","PANTHER:PTHR10093:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron sulfur cluster assembly protein 1, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC227.13c","secondary_identifiers":["UniProtKB:Q9UTC6"],"synonyms":[{"name":"Spom972h-ISCU","type":"exact"},{"name":"iron sulfur cluster scaffold protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UTC6"}


id: GO:0141150
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of nitric oxide-cGMP mediated signal transduction.","definition_xrefs":["PMID:14615391"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of nitric oxide mediated signal transduction","termid":"GO:0010750"},{"relation_name":"is_a","term_name":"positive regulation of cGMP-mediated signaling","termid":"GO:0010753"},{"relation_name":"is_a","term_name":"regulation of nitric oxide-cGMP mediated signal transduction","termid":"GO:0141149"},{"relation_name":"positively_regulates","term_name":"nitric oxide-cGMP-mediated signaling","termid":"GO:0038060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of nitric oxide-cGMP mediated signal transduction","termid":"GO:0141150"}


id: PBO:0054089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1442","termid":"PBO:0054089"}


id: PBO:0028848
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_RNA_stability_during_cellular_response_to_UV","termid":"PBO:0028848"}


id: PBO:0081034
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCCH-type containing 12B","termid":"PBO:0081034"}


id: PBO:0066309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBPJ pseudogene 3","termid":"PBO:0066309"}


id: GO:0071309
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phylloquinone (vitamin K1) stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to phylloquinone","termid":"GO:0032573"},{"relation_name":"is_a","term_name":"cellular response to vitamin K","termid":"GO:0071307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to phylloquinone","synonyms":[{"name":"cellular response to vitamin K1","type":"exact"}],"termid":"GO:0071309"}


id: PBO:0000844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of condensation (RCC1) domains","termid":"PBO:0000844"}


id: GO:0046663
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a leading edge cell, the dorsal-most cells of the epidermis that migrates during dorsal closure.","definition_xrefs":["GOC:ai","PMID:12147138"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leading edge cell differentiation","termid":"GO:0035026"},{"relation_name":"part_of","term_name":"initiation of dorsal closure","termid":"GO:0007392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dorsal closure, leading edge cell differentiation","termid":"GO:0046663"}


id: PBO:0028642
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-branched,_elongated_cell_with_branch_forming_adjacent_to_septum","termid":"PBO:0028642"}


id: PBO:0040488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATXN7L3 antisense RNA 1","termid":"PBO:0040488"}


id: GO:0002775
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The synthesis or release of an antimicrobial peptide during an immune response, resulting in an increase in intracellular or extracellular levels. Such peptides may have protective properties against bacteria, fungi, viruses, or protozoa.","definition_xrefs":["PMID:15638771","GOC:add","ISBN:0781735149","PMID:11807545"],"direct_ancestors":[{"relation_name":"is_a","term_name":"production of molecular mediator of immune response","termid":"GO:0002440"},{"relation_name":"part_of","term_name":"antimicrobial humoral immune response mediated by antimicrobial peptide","termid":"GO:0061844"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"antimicrobial peptide production","termid":"GO:0002775"}


id: PR:Q9P6I1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ubc16 gene.","definition_xrefs":["UniProtKB:Q9P6I1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-conjugating enzyme E2 16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1198.09","synonyms":[{"name":"E2 ubiquitin-conjugating enzyme 16 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ubc16","type":"exact"},{"name":"ubiquitin carrier protein 16 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin-protein ligase 16 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P6I1"}


id: FYPO:0007859
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the nucleus divides into two or more fragments, each enclosed by nuclear envelope and containing a DNA mass, in a cell that does not form a mitotic spindle or undergo cytokinesis. In these cells, the nucleus does not elongate into a dumbbell shape, but instead the nuclear envelope takes on a ruffled aspect and then eventually pinches into two nuclear masses.","definition_xrefs":["PomBase:jh","PomBase:mah","PMID:20967237"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitosis","termid":"FYPO:0000337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000337","FYPO:0001320","FYPO:0000002","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"nuclear division in absence of mitotic spindle","synonyms":[{"name":"nuclear division in absence of mitotic spindle during mitotic cell cycle","type":"related"},{"name":"nuclear division in absence of mitotic spindle during vegetative growth","type":"exact"},{"name":"nuclear fission","type":"exact"},{"name":"nuclear fission in absence of mitotic spindle","type":"exact"},{"name":"rel syn DNA segregation in absence of mitotic spindle","type":"related"}],"termid":"FYPO:0007859"}


id: PBO:0067923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 225","termid":"PBO:0067923"}


id: MOD:00515
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod N-linked glycosylation, dHex HexNAc(2)","definition_xrefs":["PubMed:111247","RESID:AA0151#var","Unimod:147","PubMed:1694179","PubMed:5490222"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N4-glycosyl-L-asparagine","termid":"MOD:00160"},{"relation_name":"is_a","term_name":"complex glycosylation","termid":"MOD:00725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"HexNAc2dHex1 N4-glycosylated asparagine","synonyms":[{"name":"HexNAc(2)dHex(1)","type":"related"},{"name":"HexNAc2dHex1","type":"related"}],"termid":"MOD:00515"}


id: PBO:0014604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease II (RNB) family, involved in nuclear-transcribed mRNA catabolic process (predicted)","termid":"PBO:0014604"}


id: GO:0072261
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of extraglomerular glomerular mesangium cells in the metanephros by cell division, resulting in the expansion of their population. Extraglomerular mesangial cells (also known as lacis cells, Goormaghtigh cells) are light-staining cells in the kidney found outside the glomerulus, near the vascular pole and macula densa.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extraglomerular mesangial cell proliferation","termid":"GO:0072122"},{"relation_name":"is_a","term_name":"cell proliferation involved in metanephros development","termid":"GO:0072203"},{"relation_name":"part_of","term_name":"metanephric nephron development","termid":"GO:0072210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric extraglomerular mesangial cell proliferation involved in metanephros development","synonyms":[{"name":"metanephric Goormaghtigh proliferation","type":"related"},{"name":"metanephric lacis cell proliferation","type":"related"}],"termid":"GO:0072261"}


id: PBO:0086157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for processing of 20S pre-rRNA in the cytoplasm; associates with pre-40S ribosomal particles; inhibits the premature association of 60S subunits with assembling 40S subunits in the cytoplasm; similar to Bms1p; relocalizes from nucleus to cytoplasm upon DNA replication stress","termid":"PBO:0086157"}


id: PBO:0059408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S34","termid":"PBO:0059408"}


id: PBO:0081158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein, FOG family member 2","termid":"PBO:0081158"}


id: PR:G2TRL3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rsa3 gene.","definition_xrefs":["UniProtKB:G2TRL3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome assembly protein 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6B12.19","synonyms":[{"name":"Spom972h-rsa3","type":"exact"}],"termid":"PR:G2TRL3"}


id: GO:0009991
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete response to extracellular stimulus (obsolete GO:0009991)","termid":"GO:0009991"}


id: PBO:0001137
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ncRNA in intron","termid":"PBO:0001137"}


id: GO:2000574
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of microtubule motor activity.","definition_xrefs":["GOC:kmv"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of microtubule motor activity (obsolete GO:2000574)","synonyms":[{"name":"regulation of axonemal motor activity","type":"related"},{"name":"regulation of dynein","type":"related"},{"name":"regulation of dynein ATPase activity","type":"related"},{"name":"regulation of kinesin","type":"related"},{"name":"regulation of kinesin motor activity","type":"related"},{"name":"regulation of kinetochore motor activity","type":"related"}],"termid":"GO:2000574"}


id: PBO:0087408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Substrate-specific adaptor protein involved in apo-Rli1p maturation; subunit of the Yae1-Lto1 complex, recruiting apo-Rli1p to the CIA targeting complex, facilitating the insertion of an Fe/S cluster by the Fe-S biosynthetic machinery; deca-GX3 motif crucial for complex formation; essential for aerobic but not anaerobic growth; homolog of human ORAOV1, which is overexpressed in solid tumors; co-expression of ORAOV1 and YAE1 homolog YAE1D1 restores growth and Rli1p maturation after LTO1 depletion","termid":"PBO:0087408"}


id: PBO:0069374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 634, pseudogene","termid":"PBO:0069374"}


id: PBO:0086496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative pimeloyl-CoA synthetase involved in biotin biosynthesis; highly degraded pseudogenic paralog of YJR154W; functional copies present in S. cerevisiae strains YJM627 and A364a; functional pimeloyl-CoA synthetase (PCAS) genes are homologs of the bioW gene in Bacillus sp. and the bioC-bioH complex of E. coli","termid":"PBO:0086496"}


id: PBO:0018230
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae BTS1","termid":"PBO:0018230"}


id: PBO:0059891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND1 pseudogene 14","termid":"PBO:0059891"}


id: PR:Q9P6M1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gst3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P6M1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione S-transferase 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC688.04c","synonyms":[{"name":"GST-III (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-gst3","type":"exact"}],"termid":"PR:Q9P6M1"}


id: PBO:0038560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abl interactor 2","termid":"PBO:0038560"}


id: GO:0060935
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a cardiac fibroblast. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiocyte differentiation","termid":"GO:0035051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac fibroblast cell differentiation","termid":"GO:0060935"}


id: GO:0019443
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of tryptophan, catalyzed by the enzyme tryptophanase (EC:4.1.99.1).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete tryptophan catabolic process, using tryptophanase (obsolete GO:0019443)","synonyms":[{"name":"tryptophan breakdown, using tryptophanase","type":"exact"},{"name":"tryptophan catabolic process, using tryptophanase","type":"exact"},{"name":"tryptophan degradation, using tryptophanase","type":"exact"}],"termid":"GO:0019443"}


id: PBO:0056147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mab-21 like 2","termid":"PBO:0056147"}


id: FYPO:0005022
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, localization of a protein to the actomyosin contractile ring is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to actomyosin contractile ring","termid":"FYPO:0002560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000032"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000032"],"is_obsolete":false,"name":"decreased rate of protein localization to actomyosin contractile ring","synonyms":[{"name":"decreased rate of protein localisation to actomyosin contractile ring","type":"exact"},{"name":"decreased rate of protein localization to actomyosin contractile ring during mitotic cell cycle","type":"related"},{"name":"decreased rate of protein localization to actomyosin contractile ring during vegetative growth","type":"exact"},{"name":"decreased rate of protein localization to actomyosin contractile ring involved in mitotic cytokinesis","type":"exact"},{"name":"decreased rate of protein localization to cytokinetic contractile ring","type":"exact"},{"name":"decreased rate of protein localization to mitotic contractile ring","type":"exact"},{"name":"decreased rate of protein recruitment to actomyosin contractile ring","type":"related"},{"name":"reduced rate of protein localization to actomyosin contractile ring","type":"exact"}],"termid":"FYPO:0005022"}


id: PBO:0087062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L3; homologous to mammalian ribosomal protein L3 and bacterial L3; plays an important role in function of eIF5B in stimulating 3' end processing of 18S rRNA in context of 80S ribosomes that have not yet engaged in translation; involved in replication and maintenance of killer double stranded RNA virus","termid":"PBO:0087062"}


id: PBO:0108986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm associated microtubule inner protein 10","termid":"PBO:0108986"}


id: PBO:0054031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1362","termid":"PBO:0054031"}


id: PBO:0039575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat and sterile alpha motif domain containing 3","termid":"PBO:0039575"}


id: GO:0047629
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ADP + H2O = IDP + NH3.","definition_xrefs":["EC:3.5.4.7","MetaCyc:ADP-DEAMINASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenosine-phosphate deaminase activity","termid":"GO:0047623"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016810","GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"ADP deaminase activity","secondary_identifiers":["RHEA:12741"],"synonyms":[{"name":"ADP aminohydrolase activity","type":"related"},{"name":"adenosine diphosphate deaminase activity","type":"related"},{"name":"adenosinepyrophosphate deaminase activity","type":"related"}],"termid":"GO:0047629"}


id: PBO:0044413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily R member 1","termid":"PBO:0044413"}


id: PBO:0051870
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ISL LIM homeobox 2","termid":"PBO:0051870"}


id: PBO:0051676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inhibitor of growth family, X-linked (pseudogene)","termid":"PBO:0051676"}


id: GO:2000152
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of regulation of ubiquitin-specific protease activity (deubiquitinase) activity.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of peptidase activity","termid":"GO:0052547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of ubiquitin-specific protease activity","synonyms":[{"name":"regulation of UBP","type":"related"},{"name":"regulation of UCH2","type":"related"},{"name":"regulation of deubiquitinase activity","type":"exact"}],"termid":"GO:2000152"}


id: GO:0005862
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A form of the tropomyosin dimer found associated with actin and the troponin complex in muscle thin filaments.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"striated muscle thin filament","termid":"GO:0005865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0015629","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"muscle thin filament tropomyosin","termid":"GO:0005862"}


id: PBO:0089794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nickel-dependent urease Ure2","termid":"PBO:0089794"}


id: FYPO:0006433
data:
  {"alleles_by_uniquename":{"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115204],"is_not":false,"summary":null,"term":"FYPO:0006433"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of the tubular endoplasmic reticulum (ER) is abnormal. The tubular ER is the portion of the ER that consists of tubules having membranes with high curvature in cross-section.","definition_xrefs":["GO:0071782","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal endoplasmic reticulum morphology","termid":"FYPO:0000354"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00426":null},"genotype_count":1,"genotypes_by_uniquename":{"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"bbl1-P363S(aa)","display_uniquename":"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00426:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormal tubular endoplasmic reticulum morphology","references_by_uniquename":{"PMID:25318672":null},"single_locus_annotated_genes":["SJAG_00426"],"single_locus_genotype_uniquenames":["bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal ER tubular network morphology","type":"exact"},{"name":"abnormal endoplasmic reticulum tubular network morphology","type":"exact"},{"name":"abnormal tubular ER morphology","type":"exact"},{"name":"abnormal tubular endoplasmic reticulum morphology during mitotic cell cycle","type":"related"},{"name":"abnormal tubular endoplasmic reticulum morphology during vegetative growth","type":"exact"}],"termid":"FYPO:0006433","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000162":null,"FYPO:0006433":null,"FYPO_EXT:0000001":null}}


id: GO:1903498
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of a bundle sheath cell.","definition_xrefs":["GOC:TermGenie","GOC:tb","PMID:24517883","GO_REF:0000086"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bundle sheath cell differentiation","termid":"GO:1903498"}


id: FYPO:0002432
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which all cells in a population are inviable, and the population includes a mixture of germinated spores and vegetative cells of abnormal shape. The vegetative cells arise from division of some of the germinated spores, and may form a microcolony of up to 64 cells.","definition_xrefs":["PomBase:mah","PomBase:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable mixed population including germinated spores and cells with abnormal shape (obsolete FYPO:0002432)","termid":"FYPO:0002432"}


id: PBO:0055801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysophosphatidic acid receptor 3","termid":"PBO:0055801"}


id: GO:1902657
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a prospore membrane.","definition_xrefs":["GOC:TermGenie","GOC:dph","GO_REF:0000087","PMID:24036347"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to membrane","termid":"GO:0072657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to prospore membrane","secondary_identifiers":["GO:1902658","GO:0072693"],"synonyms":[{"name":"establishment of protein localisation in prospore membrane","type":"related"},{"name":"establishment of protein localisation to prospore membrane","type":"related"},{"name":"establishment of protein localization in prospore membrane","type":"related"},{"name":"establishment of protein localization to prospore membrane","type":"related"},{"name":"protein localisation in prospore membrane","type":"exact"},{"name":"protein localisation to prospore membrane","type":"exact"},{"name":"protein localization in prospore membrane","type":"exact"},{"name":"protein targeting to FSM","type":"related"},{"name":"protein targeting to ascospore-type prospore membrane","type":"related"},{"name":"protein targeting to forespore membrane","type":"related"},{"name":"protein targeting to prospore membrane","type":"related"},{"name":"protein-prospore membrane targeting","type":"related"}],"termid":"GO:1902657"}


id: GO:0035568
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The methylation of the N-terminal proline of proteins.","definition_xrefs":["PMID:20668449","RESID:AA0419"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal protein amino acid methylation","termid":"GO:0006480"},{"relation_name":"is_a","term_name":"peptidyl-proline modification","termid":"GO:0018208"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"N-terminal peptidyl-proline methylation","termid":"GO:0035568"}


id: PR:O14065
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC962.01 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14065"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C962.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC962.01","synonyms":[{"name":"Spom972h-SPCC962.01","type":"exact"}],"termid":"PR:O14065"}


id: GO:0035142
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the dorsal fin are generated and organized. A dorsal fin is an unpaired medial fin on the dorsal aspect of fish that provides lateral stability while swimming. Generally fish have one or two dorsal fins.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"medial fin morphogenesis","termid":"GO:0035141"},{"relation_name":"part_of","term_name":"dorsal fin development","termid":"GO:0033337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dorsal fin morphogenesis","termid":"GO:0035142"}


id: GO:0035773
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of proinsulin from secretory granules (B granules) in the B cells of the pancreas; accompanied by cleavage of proinsulin to form mature insulin, in response to a glucose stimulus.","definition_xrefs":["PMID:8492079","GOC:bf","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"insulin secretion","termid":"GO:0030073"},{"relation_name":"is_a","term_name":"establishment of localization in cell","termid":"GO:0051649"},{"relation_name":"part_of","term_name":"cellular response to glucose stimulus","termid":"GO:0071333"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179","GO:0023052"],"is_obsolete":false,"name":"insulin secretion involved in cellular response to glucose stimulus","synonyms":[{"name":"insulin secretion involved in cellular response to glucose","type":"exact"}],"termid":"GO:0035773"}


id: PBO:0057532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 648","termid":"PBO:0057532"}


id: PBO:0090220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Sof1","termid":"PBO:0090220"}


id: GO:0140747
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription of a non-protein coding gene from a DNA-template.","definition_xrefs":["GOC:pg"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of ncRNA transcription (obsolete GO:0140747)","termid":"GO:0140747"}


id: GO:0023053
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a mechanical signal causes activation of a receptor.","definition_xrefs":["GOC:mtg_signal"],"gene_count":0,"genotype_count":0,"name":"obsolete signal initiation by mechanical effect (obsolete GO:0023053)","synonyms":[{"name":"signal initiation by mechanical effect","type":"exact"}],"termid":"GO:0023053"}


id: PBO:0041735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calmodulin-lysine N-methyltransferase","termid":"PBO:0041735"}


id: PBO:0077358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 97 pseudogene 2","termid":"PBO:0077358"}


id: PBO:0073172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEL1L family member 3","termid":"PBO:0073172"}


id: PBO:0053738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 963","termid":"PBO:0053738"}


id: GO:0033559
data:
  {"annotated_genes":["SJAG_03943","SJAG_00099"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110498,69266],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006636"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid metabolic process","termid":"GO:0006631"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00099":null,"SJAG_03943":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"unsaturated fatty acid metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PWY-782","MetaCyc:PWY-762"],"synonyms":[{"name":"unsaturated fatty acid metabolism","type":"exact"}],"termid":"GO:0033559","terms_by_termid":{"GO:0006636":null}}


id: GO:0018657
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: toluene + 1/2 O2 = 3-hydroxytoluene.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete toluene 3-monooxygenase activity (obsolete GO:0018657)","termid":"GO:0018657"}


id: GO:0052204
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of the functional activity of proteins in a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:tb","GOC:dph","GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of molecular function in other organism involved in symbiotic interaction (obsolete GO:0052204)","synonyms":[{"name":"down regulation of protein function in other organism during symbiotic interaction","type":"exact"},{"name":"down-regulation of protein function in other organism during symbiotic interaction","type":"exact"},{"name":"downregulation of protein function in other organism during symbiotic interaction","type":"exact"},{"name":"inhibition of protein function in other organism","type":"exact"},{"name":"inhibition of protein function in other organism during symbiotic interaction","type":"narrow"},{"name":"negative regulation of protein function in other organism during symbiotic interaction","type":"exact"}],"termid":"GO:0052204"}


id: PBO:0079133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymic stromal lymphopoietin","termid":"PBO:0079133"}


id: GO:0033791
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (25R)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oyl-CoA + H2O + acceptor = (24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestan-26-oyl-CoA + reduced acceptor.","definition_xrefs":["EC:1.17.99.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH or CH2 groups","termid":"GO:0016725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity","secondary_identifiers":["RHEA:15733","MetaCyc:1.17.99.3-RXN"],"synonyms":[{"name":"(25R)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oyl-CoA:acceptor 24-oxidoreductase (24R-hydroxylating) activity","type":"related"},{"name":"3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oate 24-hydroxylase activity","type":"related"},{"name":"3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA oxidase activity","type":"related"},{"name":"THC-CoA oxidase activity","type":"related"},{"name":"THCA-CoA oxidase activity","type":"related"},{"name":"trihydroxycoprostanoyl-CoA oxidase activity","type":"related"}],"termid":"GO:0033791"}


id: PBO:0034376
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_potential_to_developmentally_contribute_to","termid":"PBO:0034376"}


id: PBO:0018282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT III complex subunit Cmp7 (predicted)","termid":"PBO:0018282"}


id: PBO:0054814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2227","termid":"PBO:0054814"}


id: GO:0002451
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Tolerance induction of mature B cells in the peripheral lymphoid tissues: the blood, lymph nodes, spleen, and mucosal-associated lymphoid tissue.","definition_xrefs":["GOC:jal","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peripheral tolerance induction","termid":"GO:0002465"},{"relation_name":"is_a","term_name":"B cell tolerance induction","termid":"GO:0002514"},{"relation_name":"is_a","term_name":"B cell mediated immunity","termid":"GO:0019724"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peripheral B cell tolerance induction","synonyms":[{"name":"peripheral B lymphocyte tolerance induction","type":"exact"},{"name":"peripheral B-cell tolerance induction","type":"exact"},{"name":"peripheral B-lymphocyte tolerance induction","type":"exact"}],"termid":"GO:0002451"}


id: PBO:0005846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat protein, unknown biological role","termid":"PBO:0005846"}


id: SO:0000355
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of the genome which is co-inherited as the result of the lack of historic recombination within it.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"recombination_feature","termid":"SO:0000298"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"haplotype_block","synonyms":[{"name":"haplotype block","type":"exact"}],"termid":"SO:0000355"}


id: PBO:0026751
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_response_to_stress","termid":"PBO:0026751"}


id: PBO:0079579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 C","termid":"PBO:0079579"}


id: GO:0102411
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: quercetin-3-glucoside + UDP-alpha-D-glucose(2-) = quercetin 3,4'-O-diglucoside + UDP(3-).","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete quercetin-3,4'-O-glucosyltransferase activity (obsolete GO:0102411)","termid":"GO:0102411"}


id: PBO:0055473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2906","termid":"PBO:0055473"}


id: PBO:0046915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 30 member B","termid":"PBO:0046915"}


id: RO:0002240
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event.","direct_ancestors":[{"relation_name":"is_a","term_name":"related_via_exposure_to","termid":"RO:0002244"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_exposure_receptor","termid":"RO:0002240"}


id: GO:0033135
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-serine.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein phosphorylation","termid":"GO:0001932"},{"relation_name":"regulates","term_name":"peptidyl-serine phosphorylation","termid":"GO:0018105"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of peptidyl-serine phosphorylation","termid":"GO:0033135"}


id: PBO:0073117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short chain dehydrogenase/reductase family 42E, member 1 pseudogene 5","termid":"PBO:0073117"}


id: GO:0017071
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that forms a transmembrane channel through which cations ions may pass in response to an intracellular cyclic nucleotide binding to the channel complex or one of its constituent parts.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cation channel complex","termid":"GO:0034703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"intracellular cyclic nucleotide activated cation channel complex","termid":"GO:0017071"}


id: PATO:0000962
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000962 absolute opacity value (obsolete PATO:0000962)","termid":"PATO:0000962"}


id: PBO:0064915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP4R2 pseudogene 4","termid":"PBO:0064915"}


id: PBO:0080720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WSC domain containing 2","termid":"PBO:0080720"}


id: GO:1903166
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a polycyclic arene stimulus.","definition_xrefs":["GOC:TermGenie","PMID:10998501","GO_REF:0000071","GOC:mr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"response to polycyclic arene","termid":"GO:1903165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to polycyclic arene","termid":"GO:1903166"}


id: PBO:0004750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c heme lyase (predicted)","termid":"PBO:0004750"}


id: PBO:0045845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 35","termid":"PBO:0045845"}


id: GO:0140438
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent attachment of a stearoyl group to an amino acid in a protein.","definition_xrefs":["PMID:26214738"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein lipidation","termid":"GO:0006497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0042158"}],"interesting_parent_ids":["GO:0042158","GO:0008150"],"is_obsolete":false,"name":"protein stearoylation","termid":"GO:0140438"}


id: PBO:0071337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L28 pseudogene 1","termid":"PBO:0071337"}


id: PBO:0090987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Tlg2","termid":"PBO:0090987"}


id: GO:0034333
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an adherens junction. An adherens junction is a cell-cell junction composed of the epithelial cadherin-catenin complex at which the cytoplasmic face of the plasma membrane is attached to actin filaments.","definition_xrefs":["GOC:aruk","GOC:bc","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell junction assembly","termid":"GO:0007043"},{"relation_name":"is_a","term_name":"adherens junction organization","termid":"GO:0034332"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"adherens junction assembly","synonyms":[{"name":"adherens junction formation","type":"exact"}],"termid":"GO:0034333"}


id: PBO:0080350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 2 receptor 2 pseudogene","termid":"PBO:0080350"}


id: PBO:0049660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H4 clustered histone 14","termid":"PBO:0049660"}


id: PBO:0018036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTR family peptide transmembrane transporter Ptr2","termid":"PBO:0018036"}


id: PBO:0087905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription factor, activates transcription of stress response genes; nuclear localization is positively regulated by calcineurin-mediated dephosphorylation; rapidly localizes to the nucleus under blue light stress; can be activated in stochastic pulses of nuclear localization in response to calcium","termid":"PBO:0087905"}


id: PBO:0051588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 20","termid":"PBO:0051588"}


id: PBO:0056705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maternal embryonic leucine zipper kinase","termid":"PBO:0056705"}


id: GO:0030838
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of actin polymerization.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of actin filament polymerization","termid":"GO:0030833"},{"relation_name":"is_a","term_name":"positive regulation of protein polymerization","termid":"GO:0032273"},{"relation_name":"is_a","term_name":"positive regulation of cytoskeleton organization","termid":"GO:0051495"},{"relation_name":"is_a","term_name":"positive regulation of supramolecular fiber organization","termid":"GO:1902905"},{"relation_name":"positively_regulates","term_name":"actin filament polymerization","termid":"GO:0030041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0030036"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"positively_regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0007010","GO:0044085","GO:0030036","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"positive regulation of actin filament polymerization","synonyms":[{"name":"activation of actin filament polymerization","type":"narrow"},{"name":"positive regulation of actin polymerization","type":"exact"},{"name":"positive regulation of actin polymerization and/or depolymerization","type":"broad"},{"name":"stimulation of actin filament polymerization","type":"narrow"},{"name":"up regulation of actin filament polymerization","type":"exact"},{"name":"up-regulation of actin filament polymerization","type":"exact"},{"name":"upregulation of actin filament polymerization","type":"exact"}],"termid":"GO:0030838"}


id: GO:0019919
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of methylation of peptidyl-arginine to form peptidyl-N(omega),N(omega)-dimethyl-L-arginine.","definition_xrefs":["RESID:AA0068","RESID:AA0069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-arginine omega-N-methylation","termid":"GO:0035247"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-arginine methylation, to asymmetrical-dimethyl arginine","synonyms":[{"name":"peptidyl-arginine methylation, to unsymmetrical-dimethyl arginine","type":"exact"}],"termid":"GO:0019919"}


id: GO:0033827
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of an N-acetyl-D-glucosamine residue from UDP-N-acetyl-D-glucosamine to the 4-position of a mannose linked alpha-1,6 to the core mannose of high-mannose oligosaccharides produced by Dictyostelium discoideum.","definition_xrefs":["EC:2.4.1.197"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"high-mannose-oligosaccharide beta-1,4-N-acetylglucosaminyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.197-RXN"],"synonyms":[{"name":"UDP-GlcNAc:oligosaccharide beta-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:high-mannose-oligosaccharide beta-1,4-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"acetylglucosamine-oligosaccharide acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-oligosaccharide acetylglucosaminyltransferase activity","type":"related"}],"termid":"GO:0033827"}


id: GO:0004816
data:
  {"annotated_genes":["SJAG_04856","SJAG_02517"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[98374,101155],"is_not":false,"summary":null,"term":"GO:0004816"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-asparagine + ATP + tRNA(Asn) = AMP + Asn-tRNA(Asn) + diphosphate + 2 H+.","definition_xrefs":["RHEA:11180","EC:6.1.1.22"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02517":null,"SJAG_04856":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0140101","GO:0003674","GO:0140098","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"asparagine-tRNA ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:ASPARAGINE--TRNA-LIGASE-RXN","KEGG_REACTION:R03648","Reactome:R-HSA-379996","Reactome:R-HSA-380227"],"synonyms":[{"name":"L-asparagine:tRNAAsn ligase (AMP-forming)","type":"related"},{"name":"asparagine translase activity","type":"related"},{"name":"asparaginyl transfer RNA synthetase activity","type":"related"},{"name":"asparaginyl transfer ribonucleic acid synthetase activity","type":"related"},{"name":"asparaginyl-tRNA synthetase activity","type":"exact"},{"name":"asparaginyl-transfer ribonucleate synthetase activity","type":"related"},{"name":"asparagyl-transfer RNA synthetase activity","type":"related"}],"termid":"GO:0004816","terms_by_termid":{"GO:0004816":null}}


id: GO:0045547
data:
  {"annotated_genes":["SJAG_02163","SJAG_00554"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[93892,104113],"is_not":false,"summary":null,"term":"GO:0045547"}]},"cv_name":"molecular_function","definition":"Catalysis of the condensation of isopentenyl diphosphate and farnesyl diphosphate in the cis-configuration to form dehydrodolichyl diphosphate.","definition_xrefs":["PMID:9858571"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prenyltransferase activity","termid":"GO:0004659"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00554":null,"SJAG_02163":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016765"],"is_obsolete":false,"name":"dehydrodolichyl diphosphate synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:2.5.1.87","RHEA:53008"],"termid":"GO:0045547","terms_by_termid":{"GO:0045547":null}}


id: GO:0043488
data:
  {"annotated_genes":["SJAG_04153","SJAG_03886","SJAG_03883","SJAG_00343","SJAG_04006","SJAG_01191","SJAG_04824","SJAG_02239","SJAG_00686","SJAG_16457","SJAG_02213","SJAG_02573","SJAG_00285","SJAG_01521","SJAG_04321","SJAG_01053","SJAG_00391","SJAG_05322","SJAG_00759","SJAG_02808","SJAG_02036","SJAG_00797","SJAG_01944","SJAG_02622","SJAG_04407","SJAG_04946","SJAG_03157","SJAG_05010","SJAG_04084","SJAG_00670","SJAG_01625","SJAG_02383","SJAG_03113","SJAG_04427","SJAG_04350","SJAG_05014","SJAG_01818","SJAG_03745","SJAG_04818","SJAG_01910","SJAG_05694","SJAG_04825","SJAG_04880","SJAG_02370","SJAG_03696","SJAG_03283","SJAG_02540","SJAG_00966","SJAG_03876","SJAG_03179","SJAG_00854","SJAG_03597"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84541,113367],"is_not":false,"summary":null,"term":"GO:0043488"},{"annotations":[114377],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061158"},{"annotations":[86310,96192,77679,114378],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070935"},{"annotations":[87651,106030,108098,102219,105981,109575],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000290"},{"annotations":[114175],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061157"},{"annotations":[85605,92359],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048255"},{"annotations":[100496,98182,102548,111529,114364,101341,89165,103551,111976,92023,93360,88343],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071042"},{"annotations":[109426,89168,101344,100499,111235,114367,96023,85821,94252,92026,107165,94168],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000288"},{"annotations":[99131,90441,88688,85911,91617,111742,112702,89504,88033,113248,88595,86894,94619,88093,105298],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000289"},{"annotations":[87768],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0036450"},{"annotations":[91736],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990074"},{"annotations":[85924,86313,87624],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000815"}]},"cv_name":"biological_process","definition":"Any process that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of RNA stability","termid":"GO:0043487"},{"relation_name":"is_a","term_name":"regulation of mRNA catabolic process","termid":"GO:0061013"}],"gene_count":52,"genes_by_uniquename":{"SJAG_00285":null,"SJAG_00343":null,"SJAG_00391":null,"SJAG_00670":null,"SJAG_00686":null,"SJAG_00759":null,"SJAG_00797":null,"SJAG_00854":null,"SJAG_00966":null,"SJAG_01053":null,"SJAG_01191":null,"SJAG_01521":null,"SJAG_01625":null,"SJAG_01818":null,"SJAG_01910":null,"SJAG_01944":null,"SJAG_02036":null,"SJAG_02213":null,"SJAG_02239":null,"SJAG_02370":null,"SJAG_02383":null,"SJAG_02540":null,"SJAG_02573":null,"SJAG_02622":null,"SJAG_02808":null,"SJAG_03113":null,"SJAG_03157":null,"SJAG_03179":null,"SJAG_03283":null,"SJAG_03597":null,"SJAG_03696":null,"SJAG_03745":null,"SJAG_03876":null,"SJAG_03883":null,"SJAG_03886":null,"SJAG_04006":null,"SJAG_04084":null,"SJAG_04153":null,"SJAG_04321":null,"SJAG_04350":null,"SJAG_04407":null,"SJAG_04427":null,"SJAG_04818":null,"SJAG_04824":null,"SJAG_04825":null,"SJAG_04880":null,"SJAG_04946":null,"SJAG_05010":null,"SJAG_05014":null,"SJAG_05322":null,"SJAG_05694":null,"SJAG_16457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0016071","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of mRNA stability","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0043488","terms_by_termid":{"GO:0000288":null,"GO:0000289":null,"GO:0000290":null,"GO:0036450":null,"GO:0043488":null,"GO:0048255":null,"GO:0061157":null,"GO:0061158":null,"GO:0070935":null,"GO:0071042":null,"GO:1990074":null,"GO:2000815":null}}


id: PBO:0078033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 23","termid":"PBO:0078033"}


id: PR:O13865
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pan3 gene.","definition_xrefs":["UniProtKB:O13865","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAB-dependent poly(A)-specific ribonuclease subunit pan3-like (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1B1.04c","synonyms":[{"name":"PAB1P-dependent poly(A)-nuclease (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-pan3","type":"exact"}],"termid":"PR:O13865"}


id: PBO:0029281
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_mitotic_spindle_pole_body","termid":"PBO:0029281"}


id: GO:0038111
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by interleukin-7 binding to its receptor on the surface of a cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:signaling","GOC:nhn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"},{"relation_name":"part_of","term_name":"cellular response to interleukin-7","termid":"GO:0098761"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"interleukin-7-mediated signaling pathway","synonyms":[{"name":"IL-7-mediated signaling pathway","type":"exact"},{"name":"interleukin-7-mediated signalling pathway","type":"exact"}],"termid":"GO:0038111"}


id: PBO:0081613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 541","termid":"PBO:0081613"}


id: FYPO:0004540
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transcription regulation phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing is incrsasd. Chromatin silencing is the observed effect of processes that repress transcription in a region of the genome that is normally assembled into heterochromatin or CENP-A-containing chromatin (the latter is found at the centromere central core).","definition_xrefs":["PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin silencing","termid":"FYPO:0000144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0006551","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased chromatin silencing","synonyms":[{"name":"increased chromatin silencing during mitotic cell cycle","type":"related"},{"name":"increased chromatin silencing during vegetative growth","type":"exact"}],"termid":"FYPO:0004540"}


id: GO:1902652
data:
  {"annotated_genes":["SJAG_02719","SJAG_03509","SJAG_03235","SJAG_04059","SJAG_04217","SJAG_04362","SJAG_03598","SJAG_04018","SJAG_03352","SJAG_04049","SJAG_02982","SJAG_00717","SJAG_03024","SJAG_00453","SJAG_00370","SJAG_03249","SJAG_03531","SJAG_00770","SJAG_02855","SJAG_00413","SJAG_00235","SJAG_00624","SJAG_04270","SJAG_02068","SJAG_01307","SJAG_04499","SJAG_02044","SJAG_02104","SJAG_03929","SJAG_04810","SJAG_03715","SJAG_03349","SJAG_00580","SJAG_04865","SJAG_01474","SJAG_03018","SJAG_03750","SJAG_04790","SJAG_00158"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110992,84609,84863,103628,100369,103942,114837,85782,92699,95692,100783,103809,94152,111323,84831,88638,90741,90549,107904,102614,112640,105577,88691,100553,107399,106179,87593,105338,94951],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006696"},{"annotations":[99462,100098,114936,84896,111165],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008204"},{"annotations":[95876],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006102"},{"annotations":[89984],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0010895"},{"annotations":[105947],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0070452"},{"annotations":[105948],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0045540"},{"annotations":[84699,84698,101922],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0032443"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving secondary alcohol.","definition_xrefs":["GO_REF:0000068","GOC:TermGenie","PMID:11288200","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol metabolic process","termid":"GO:0006066"}],"gene_count":39,"genes_by_uniquename":{"SJAG_00158":null,"SJAG_00235":null,"SJAG_00370":null,"SJAG_00413":null,"SJAG_00453":null,"SJAG_00580":null,"SJAG_00624":null,"SJAG_00717":null,"SJAG_00770":null,"SJAG_01307":null,"SJAG_01474":null,"SJAG_02044":null,"SJAG_02068":null,"SJAG_02104":null,"SJAG_02719":null,"SJAG_02855":null,"SJAG_02982":null,"SJAG_03018":null,"SJAG_03024":null,"SJAG_03235":null,"SJAG_03249":null,"SJAG_03349":null,"SJAG_03352":null,"SJAG_03509":null,"SJAG_03531":null,"SJAG_03598":null,"SJAG_03715":null,"SJAG_03750":null,"SJAG_03929":null,"SJAG_04018":null,"SJAG_04049":null,"SJAG_04059":null,"SJAG_04217":null,"SJAG_04270":null,"SJAG_04362":null,"SJAG_04499":null,"SJAG_04790":null,"SJAG_04810":null,"SJAG_04865":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"secondary alcohol metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"secondary alcohol metabolism","type":"exact"}],"termid":"GO:1902652","terms_by_termid":{"GO:0006102":null,"GO:0006696":null,"GO:0008204":null,"GO:0010895":null,"GO:0032443":null,"GO:0045540":null,"GO:0070452":null}}


id: GO:1903424
data:
  {"annotated_genes":["SJAG_01973"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109842,96922],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140116"}]},"cv_name":"biological_process","definition":"The process in which fluoride is transported across a membrane.","definition_xrefs":["PMID:24173035","GOC:TermGenie","GO_REF:0000069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic anion transmembrane transport","termid":"GO:0098656"},{"relation_name":"is_a","term_name":"inorganic anion transmembrane transport","termid":"GO:0098661"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01973":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"fluoride transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"fluoride membrane transport","type":"exact"},{"name":"transmembrane fluoride transport","type":"exact"}],"termid":"GO:1903424","terms_by_termid":{"GO:0140116":null}}


id: PBO:0084661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial 2' O-ribose methyltransferase; required for methylation of U(2791) in 21S rRNA; MRM2 deletion confers thermosensitive respiration and loss of mitochondrial DNA; has similarity to Spb1p and Trm7p, and to E. coli FtsJ/RrmJ","termid":"PBO:0084661"}


id: PBO:0043377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clustered mitochondria homolog pseudogene 7","termid":"PBO:0043377"}


id: GO:0007131
data:
  {"annotated_genes":["SJAG_01410","SJAG_03221","SJAG_01708","SJAG_03751","SJAG_01044","SJAG_03048","SJAG_04950","SJAG_02652","SJAG_07002","SJAG_04303","SJAG_03219","SJAG_02460","SJAG_05333","SJAG_02556","SJAG_02708","SJAG_01138","SJAG_01419","SJAG_04205","SJAG_00935","SJAG_04748","SJAG_00980","SJAG_00908","SJAG_01677","SJAG_02181","SJAG_02490","SJAG_02339","SJAG_02822","SJAG_02294","SJAG_01156","SJAG_05295","SJAG_01076","SJAG_00100","SJAG_00266","SJAG_00727","SJAG_03525","SJAG_00172","SJAG_00757","SJAG_02616","SJAG_03567","SJAG_02592","SJAG_03720","SJAG_02267","SJAG_03438","SJAG_05373","SJAG_02465","SJAG_02311","SJAG_00623"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84683,85187,85413,85718,86406,86455,86916,87575,88767,88844,89337,90852,93030,96649,96682,96746,97623,99973,100428,100929,100957,102817,103768,104070,107218,111622,113189,114827],"is_not":false,"summary":null,"term":"GO:0007131"},{"annotations":[104064],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0010846"},{"annotations":[103762,84676,112892,85284,95160],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990918"},{"annotations":[105748,104841,107217,86454,100956],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010780"},{"annotations":[103764,106397],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010772"},{"annotations":[84616,88971,113185,97621,93029,96646,103765,106398],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000709"},{"annotations":[84617,96647,88972],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010774"},{"annotations":[104067],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0045128"},{"annotations":[104453,98483],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1905263"},{"annotations":[85186],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0010845"},{"annotations":[85291,90484,112382],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0010520"},{"annotations":[106421,105183,113379,97625,113191,114828,104248,113526,102278],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000712"},{"annotations":[112332],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0062209"}]},"cv_name":"biological_process","definition":"The cell cycle process in which double strand breaks are formed and repaired through a single or double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity.","definition_xrefs":["PMID:2087779"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reciprocal homologous recombination","termid":"GO:0140527"},{"relation_name":"part_of","term_name":"meiosis I","termid":"GO:0007127"}],"gene_count":47,"genes_by_uniquename":{"SJAG_00100":null,"SJAG_00172":null,"SJAG_00266":null,"SJAG_00623":null,"SJAG_00727":null,"SJAG_00757":null,"SJAG_00908":null,"SJAG_00935":null,"SJAG_00980":null,"SJAG_01044":null,"SJAG_01076":null,"SJAG_01138":null,"SJAG_01156":null,"SJAG_01410":null,"SJAG_01419":null,"SJAG_01677":null,"SJAG_01708":null,"SJAG_02181":null,"SJAG_02267":null,"SJAG_02294":null,"SJAG_02311":null,"SJAG_02339":null,"SJAG_02460":null,"SJAG_02465":null,"SJAG_02490":null,"SJAG_02556":null,"SJAG_02592":null,"SJAG_02616":null,"SJAG_02652":null,"SJAG_02708":null,"SJAG_02822":null,"SJAG_03048":null,"SJAG_03219":null,"SJAG_03221":null,"SJAG_03438":null,"SJAG_03525":null,"SJAG_03567":null,"SJAG_03720":null,"SJAG_03751":null,"SJAG_04205":null,"SJAG_04303":null,"SJAG_04748":null,"SJAG_04950":null,"SJAG_05295":null,"SJAG_05333":null,"SJAG_05373":null,"SJAG_07002":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0006310","GO:0008150","GO:0007049","GO:0006259","GO:0140013"],"is_obsolete":false,"name":"reciprocal meiotic recombination","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0007145","GO:0000021"],"synonyms":[{"name":"female meiotic recombination","type":"narrow"},{"name":"gene conversion with reciprocal crossover","type":"exact"}],"termid":"GO:0007131","terms_by_termid":{"GO:0000709":null,"GO:0000712":null,"GO:0007131":null,"GO:0010520":null,"GO:0010772":null,"GO:0010774":null,"GO:0010780":null,"GO:0010845":null,"GO:0010846":null,"GO:0045128":null,"GO:0062209":null,"GO:1905263":null,"GO:1990918":null}}


id: PBO:0044887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEP domain containing 1","termid":"PBO:0044887"}


id: PBO:0042909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cofilin 1 pseudogene 6","termid":"PBO:0042909"}


id: GO:0033019
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-hydroxyvalerate + NAD+ = 5-oxovalerate + NADH.","definition_xrefs":["PMID:12406764","GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"5-hydroxyvalerate dehydrogenase activity","termid":"GO:0033019"}


id: PBO:0071480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32 pseudogene 21","termid":"PBO:0071480"}


id: PBO:0110022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial mitochondrial tRNA 5'-end processing protein Rrg8","termid":"PBO:0110022"}


id: PR:Q9UUC8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 39S ribosomal protein L43, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02962"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"54S ribosomal protein L51, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19C2.12","secondary_identifiers":["UniProtKB:Q9UUC8"],"synonyms":[{"name":"Spom972h-MRPL43","type":"exact"}],"termid":"PR:Q9UUC8"}


id: PBO:0041430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 8 open reading frame 82","termid":"PBO:0041430"}


id: PBO:0004739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutaredoxin Grx4","termid":"PBO:0004739"}


id: PR:Q9Y7Q7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC297.05 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7Q7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DENN domain-containing protein C297.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC297.05","synonyms":[{"name":"Spom972h-SPCC297.05","type":"exact"}],"termid":"PR:Q9Y7Q7"}


id: GO:0052005
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont inhibits or disrupts the normal execution of the ethylene-mediated defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host defenses","termid":"GO:0044414"},{"relation_name":"is_a","term_name":"modulation by symbiont of host ethylene-mediated defense response","termid":"GO:0052084"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host ethylene-mediated defense response","secondary_identifiers":["GO:0052070","GO:0052268","GO:0052254"],"synonyms":[{"name":"down regulation by symbiont of host ethylene-mediated defense response","type":"exact"},{"name":"down-regulation by symbiont of host ethylene-mediated defense response","type":"exact"},{"name":"downregulation by symbiont of host ethylene-mediated defense response","type":"exact"},{"name":"inhibition by symbiont of host ethylene-mediated defense response","type":"narrow"},{"name":"negative regulation by organism of defense-related ethylene-mediated signal transduction pathway in other organism involved in symbiotic interaction","type":"broad"},{"name":"negative regulation by organism of ethylene-mediated defense response of other organism involved in symbiotic interaction","type":"broad"},{"name":"negative regulation by symbiont of defense-related host ethylene-mediated signal transduction pathway","type":"broad"},{"name":"negative regulation by symbiont of host ethylene-mediated defense response","type":"exact"},{"name":"suppression by organism of host ethylene-mediated defense response","type":"exact"},{"name":"suppression by symbiont of host ethylene-mediated defense response","type":"exact"}],"termid":"GO:0052005"}


id: GO:0050111
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acyl-CoA + 7n H+ + n methylmalonyl-CoA + 2n NADPH = n CO2 + n CoA + n H2O + multi-methyl-branched acyl-CoA + 2n NADP+.","definition_xrefs":["EC:2.3.1.111","RHEA:10588"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"mycocerosate synthase activity","secondary_identifiers":["KEGG_REACTION:R05189","MetaCyc:MYCOCEROSATE-SYNTHASE-RXN"],"synonyms":[{"name":"acyl-CoA:methylmalonyl-CoA C-acyltransferase (decarboxylating, oxoacyl- and enoyl-reducing)","type":"related"},{"name":"mycocerosic acid synthase activity","type":"related"}],"termid":"GO:0050111"}


id: PR:Q9US13
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 26S proteasome non-ATPase regulatory subunit 13 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10539:SF0","OMA:SCHPO00842","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26S proteasome regulatory subunit rpn9 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC607.05","secondary_identifiers":["UniProtKB:Q9US13"],"synonyms":[{"name":"Spom972h-PSMD13","type":"exact"}],"termid":"PR:Q9US13"}


id: PBO:0038554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABHD17A pseudogene 9","termid":"PBO:0038554"}


id: PBO:0072382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS27A pseudogene 8","termid":"PBO:0072382"}


id: SO:0001707
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H3 histone protein is tri-methylated.","direct_ancestors":[{"relation_name":"is_a","term_name":"H3K9_methylation_site","termid":"SO:0001736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H3K9_trimethylation_site","synonyms":[{"name":"H3K9 tri-methylation site","type":"exact"},{"name":"H3K9Me3","type":"related"}],"termid":"SO:0001707"}


id: PBO:0003364
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial dysautonomia","termid":"PBO:0003364"}


id: PBO:0083465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene MRPL38","termid":"PBO:0083465"}


id: PBO:0071390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L30 pseudogene 13","termid":"PBO:0071390"}


id: FYPO:0004889
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the telomere of a chromosome does not occur during the meiotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to telomere","termid":"FYPO:0004888"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein localization to telomere during meiotic cell cycle","synonyms":[{"name":"abolished protein localisation to chromosome, telomeric region, during meiotic cell cycle","type":"exact"},{"name":"abolished protein localisation to telomere during meiotic cell cycle","type":"exact"},{"name":"abolished protein localization to chromosome, telomeric region, during meiotic cell cycle","type":"exact"},{"name":"protein absent from telomere during meiotic cell cycle","type":"related"},{"name":"protein localization to telomere abolished during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0004889"}


id: PBO:0063972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 6","termid":"PBO:0063972"}


id: FYPO:0007711
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sites at which the protein Ssb1 accumulates normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:33723569"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular physical quality phenotype","termid":"FYPO:0007723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal number of Ssb1 foci","synonyms":[{"name":"normal number of RPA foci","type":"exact"},{"name":"normal number of Rad11 foci","type":"exact"},{"name":"normal number of Rpa1 foci","type":"exact"},{"name":"normal number of Ssb1 foci during mitotic cell cycle","type":"related"},{"name":"normal number of Ssb1 foci during vegetative growth","type":"exact"}],"termid":"FYPO:0007711"}


id: PBO:0029306
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_RNA_level_during_G0","termid":"PBO:0029306"}


id: GO:0008845
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["PMID:12713806"],"gene_count":0,"genotype_count":0,"name":"obsolete endonuclease VIII activity (obsolete GO:0008845)","synonyms":[{"name":"endonuclease VIII activity","type":"exact"}],"termid":"GO:0008845"}


id: GO:0008797
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-aspartate = fumarate + NH3.","definition_xrefs":["EC:4.3.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ammonia-lyase activity","termid":"GO:0016841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"aspartate ammonia-lyase activity","secondary_identifiers":["RHEA:16601","MetaCyc:ASPARTASE-RXN"],"synonyms":[{"name":"L-aspartase activity","type":"related"},{"name":"L-aspartate ammonia-lyase (fumarate-forming)","type":"related"},{"name":"L-aspartate ammonia-lyase activity","type":"related"},{"name":"aspartase activity","type":"related"},{"name":"fumaric aminase activity","type":"related"}],"termid":"GO:0008797"}


id: PBO:0076209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO2 pseudogene 19","termid":"PBO:0076209"}


id: PBO:0050261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 39","termid":"PBO:0050261"}


id: PBO:0053176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LEM domain containing 1","termid":"PBO:0053176"}


id: PBO:0060937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NFE2 like bZIP transcription factor 1","termid":"PBO:0060937"}


id: PBO:0059174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melanocortin 2 receptor accessory protein","termid":"PBO:0059174"}


id: GO:0032903
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of nerve growth factor (NGF).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neurotrophin production","termid":"GO:0032899"},{"relation_name":"regulates","term_name":"nerve growth factor production","termid":"GO:0032902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of nerve growth factor production","synonyms":[{"name":"regulation of NGF production","type":"exact"},{"name":"regulation of beta-nerve growth factor production","type":"exact"}],"termid":"GO:0032903"}


id: PBO:0075450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermatogenesis associated 3","termid":"PBO:0075450"}


id: GO:0016555
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The conversion of a uridine residue to cytosine in an RNA molecule by amination.","definition_xrefs":["PMID:11092837"],"direct_ancestors":[{"relation_name":"is_a","term_name":"base conversion or substitution editing","termid":"GO:0016553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"uridine to cytidine editing","termid":"GO:0016555"}


id: PBO:0039737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apolipoprotein F","termid":"PBO:0039737"}


id: GO:0016255
data:
  {"annotated_genes":["SJAG_03292","SJAG_00846","SJAG_05278","SJAG_02776","SJAG_03672"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83574,87500,88324,99815,110045],"is_not":false,"summary":null,"term":"GO:0016255"}]},"cv_name":"biological_process","definition":"A transamidation reaction that results in the cleavage of the polypeptide chain and the concomitant transfer of the GPI anchor to the newly formed carboxy-terminal amino acid of the anchored protein. The cleaved C-terminal contains the C-terminal GPI signal sequence of the newly synthesized polypeptide chain.","definition_xrefs":["ISBN:0879695595"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"},{"relation_name":"part_of","term_name":"GPI anchor biosynthetic process","termid":"GO:0006506"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00846":null,"SJAG_02776":null,"SJAG_03292":null,"SJAG_03672":null,"SJAG_05278":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0042158"},{"rel_name":"part_of","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0042158","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"attachment of GPI anchor to protein","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0016255","terms_by_termid":{"GO:0016255":null}}


id: GO:0008292
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of acetylcholine, the acetic acid ester of the organic base choline.","definition_xrefs":["ISBN:0192800752","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylcholine metabolic process","termid":"GO:0008291"},{"relation_name":"is_a","term_name":"acetate ester biosynthetic process","termid":"GO:1900620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"acetylcholine biosynthetic process","synonyms":[{"name":"acetylcholine anabolism","type":"exact"},{"name":"acetylcholine biosynthesis","type":"exact"},{"name":"acetylcholine formation","type":"exact"},{"name":"acetylcholine synthesis","type":"exact"}],"termid":"GO:0008292"}


id: GO:0005918
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cell-cell junction that forms a continuous band around each cell in an epithelium; within the septate junction the membranes of adjacent cells maintain a constant distance of approximately 15 nm; found in arthropods.","definition_xrefs":["PMID:11700298","PMID:28636800","ISBN:0815332181","PMID:12612641","PMID:20795303"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tight junction","termid":"GO:0070160"},{"relation_name":"part_of","term_name":"apical junction complex","termid":"GO:0043296"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"septate junction","secondary_identifiers":["NIF_Subcellular:sao427941916"],"synonyms":[{"name":"septate desmosome","type":"related"}],"termid":"GO:0005918"}


id: GO:0010126
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving mycothiol, which consists of N-acetyl-L-cysteine linked to a pseudodisaccharide, D-glucosamine and myo-inositol. Mycothiol is produced in actinomycetes like mycobacteria and serves similar functions to glutathione.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"glycoside metabolic process","termid":"GO:0016137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"mycothiol metabolic process","synonyms":[{"name":"mycothiol metabolism","type":"exact"}],"termid":"GO:0010126"}


id: PBO:0071306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 29","termid":"PBO:0071306"}


id: FYPO:0001998
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of nucleoside diphosphate kinase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal nucleoside diphosphate kinase activity","termid":"FYPO:0001997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000707","FYPO:0001985","FYPO:0000661"],"is_obsolete":false,"name":"decreased nucleoside diphosphate kinase activity","synonyms":[{"name":"reduced nucleoside diphosphate kinase activity","type":"exact"}],"termid":"FYPO:0001998"}


id: PBO:0028813
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_nuclear_centromeric_heterochromatin","termid":"PBO:0028813"}


id: PR:Q09878
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC584.01c gene.","definition_xrefs":["UniProtKB:Q09878","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfite reductase [NADPH] flavoprotein component (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC584.01c","synonyms":[{"name":"Spom972h-SPCC584.01c","type":"exact"}],"termid":"PR:Q09878"}


id: PBO:0004142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor Prp17","termid":"PBO:0004142"}


id: PBO:0055499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2933","termid":"PBO:0055499"}


id: FYPO:0003499
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of pre-replicative complex assembly is increased.","definition_xrefs":["PMID:22970243","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal pre-replicative complex assembly","termid":"FYPO:0000773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000293","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"increased rate of pre-replicative complex assembly","synonyms":[{"name":"increased rate of MCM complex loading","type":"narrow"},{"name":"increased rate of pre-RC assembly","type":"exact"},{"name":"increased rate of pre-replicative complex assembly during mitotic cell cycle","type":"related"},{"name":"increased rate of pre-replicative complex assembly during vegetative growth","type":"exact"}],"termid":"FYPO:0003499"}


id: PBO:0041311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 2 open reading frame 50","termid":"PBO:0041311"}


id: GO:1903891
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the ATF6-mediated unfolded protein response.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:bf","GOC:PARL","PMID:22013210"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endoplasmic reticulum unfolded protein response","termid":"GO:1900101"},{"relation_name":"regulates","term_name":"ATF6-mediated unfolded protein response","termid":"GO:0036500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of ATF6-mediated unfolded protein response","synonyms":[{"name":"regulation of ATF6 branch of UPR","type":"exact"},{"name":"regulation of ATF6 signal transduction pathway","type":"broad"},{"name":"regulation of ATF6 signaling in response to endoplasmic reticulum stress","type":"related"},{"name":"regulation of ATF6-alpha UPR branch","type":"narrow"},{"name":"regulation of ATF6-beta UPR branch","type":"narrow"},{"name":"regulation of UPR signaling by ATF6 stress sensor","type":"exact"},{"name":"regulation of activating transcription factor 6 signaling in unfolded protein response","type":"exact"},{"name":"regulation of endoplasmic reticulum unfolded protein response; ATF6 signaling","type":"exact"}],"termid":"GO:1903891"}


id: GO:2000452
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of CD8-positive, alpha-beta cytotoxic T cell extravasation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of CD8-positive, alpha-beta T cell extravasation","termid":"GO:2000449"},{"relation_name":"regulates","term_name":"CD8-positive, alpha-beta cytotoxic T cell extravasation","termid":"GO:0035698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of CD8-positive, alpha-beta cytotoxic T cell extravasation","termid":"GO:2000452"}


id: PBO:0047147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 181 member A","termid":"PBO:0047147"}


id: PBO:0057622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1185-2","termid":"PBO:0057622"}


id: GO:2000907
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of glucomannan catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of catabolic process","termid":"GO:0009895"},{"relation_name":"is_a","term_name":"negative regulation of macromolecule metabolic process","termid":"GO:0010605"},{"relation_name":"is_a","term_name":"negative regulation of carbohydrate metabolic process","termid":"GO:0045912"},{"relation_name":"is_a","term_name":"regulation of glucomannan catabolic process","termid":"GO:2000898"},{"relation_name":"negatively_regulates","term_name":"glucomannan catabolic process","termid":"GO:2000884"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"negatively_regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"negative regulation of glucomannan catabolic process","synonyms":[{"name":"negative regulation of glucomannan catabolism","type":"exact"}],"termid":"GO:2000907"}


id: GO:0005662
data:
  {"annotated_genes":["SJAG_01698","SJAG_03722","SJAG_03855"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[107638,111604,112344],"is_not":false,"summary":null,"term":"GO:0005662"}]},"cv_name":"cellular_component","definition":"A conserved heterotrimeric complex that binds nonspecifically to single-stranded DNA and is required for multiple processes in eukaryotic DNA metabolism, including DNA replication, DNA repair, and recombination. In all eukaryotic organisms examined the complex is composed of subunits of approximately 70, 30, and 14 kDa.","definition_xrefs":["PMID:9242902"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"part_of","term_name":"nuclear replisome","termid":"GO:0043601"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01698":null,"SJAG_03722":null,"SJAG_03855":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005694","GO:0005634"],"is_obsolete":false,"name":"DNA replication factor A complex","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Replication_protein_A"],"synonyms":[{"name":"RPA","type":"exact"},{"name":"replication protein A","type":"exact"}],"termid":"GO:0005662","terms_by_termid":{"GO:0005662":null}}


id: PBO:0058163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4457","termid":"PBO:0058163"}


id: PBO:0055442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2873","termid":"PBO:0055442"}


id: GO:0000147
data:
  {"annotated_genes":["SJAG_02075","SJAG_03044","SJAG_04886","SJAG_04001","SJAG_03086","SJAG_04465","SJAG_01964","SJAG_03146","SJAG_01732","SJAG_00649","SJAG_02228","SJAG_04644","SJAG_02177","SJAG_03119","SJAG_02245","SJAG_02511","SJAG_00521","SJAG_04052","SJAG_01384","SJAG_04100"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84284,85949,86787,90901,94028,95780,95959,99165,99360,99416,101242,103252,106786,107114,107761,108263,108286,110973,114564,114914],"is_not":false,"summary":null,"term":"GO:0000147"}]},"cv_name":"biological_process","definition":"Assembly of an actin cortical patch, a discrete actin-containing structure found at the plasma membrane of fungal cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"is_a","term_name":"cortical actin cytoskeleton organization","termid":"GO:0030866"},{"relation_name":"is_a","term_name":"actin cortical patch organization","termid":"GO:0044396"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00521":null,"SJAG_00649":null,"SJAG_01384":null,"SJAG_01732":null,"SJAG_01964":null,"SJAG_02075":null,"SJAG_02177":null,"SJAG_02228":null,"SJAG_02245":null,"SJAG_02511":null,"SJAG_03044":null,"SJAG_03086":null,"SJAG_03119":null,"SJAG_03146":null,"SJAG_04001":null,"SJAG_04052":null,"SJAG_04100":null,"SJAG_04465":null,"SJAG_04644":null,"SJAG_04886":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0030036"}],"interesting_parent_ids":["GO:0044085","GO:0030036","GO:0007010","GO:0008150"],"is_obsolete":false,"name":"actin cortical patch assembly","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0000147","terms_by_termid":{"GO:0000147":null}}


id: PBO:0070994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L19 pseudogene 18","termid":"PBO:0070994"}


id: SO:1000095
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000095 sequence_variant_causing_nonconservative_amino_acid_substitution (obsolete SO:1000095)","synonyms":[{"name":"mutation causing nonconservative amino acid substitution","type":"related"},{"name":"sequence variant causing nonconservative amino acid substitution","type":"exact"}],"termid":"SO:1000095"}


id: GO:0097381
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Stack of disc membranes located inside a photoreceptor outer segment, and containing densely packed molecules of photoreceptor proteins that traverse the lipid bilayer. Disc membranes arise as evaginations of the ciliary membrane during the development of the outer segment and may or may not remain contiguous with the ciliary membrane.","definition_xrefs":["PMID:19501669","PMID:11826267","PMID:6771304","GOC:krc","PMID:7507907","GOC:bj","PMID:26574505","GOC:pde","PMID:2537204"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle membrane","termid":"GO:0031090"},{"relation_name":"part_of","term_name":"photoreceptor outer segment","termid":"GO:0001750"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"photoreceptor disc membrane","termid":"GO:0097381"}


id: PBO:0071887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 25","termid":"PBO:0071887"}


id: PBO:0054973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2387","termid":"PBO:0054973"}


id: GO:0035671
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an enone + NADPH + H+ = a ketone + NADP+.","definition_xrefs":["PMID:17945329","GOC:kad","PMID:19166903"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"enone reductase activity","secondary_identifiers":["MetaCyc:RXN-12267"],"termid":"GO:0035671"}


id: PBO:0056221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member D1","termid":"PBO:0056221"}


id: PBO:0050943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon alpha 14","termid":"PBO:0050943"}


id: SO:0000585
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"snoRNA that is associated with guiding methylation of nucleotides. It contains two short conserved sequence motifs: C (RUGAUGA) near the 5-prime end and D (CUGA) near the 3-prime end.","direct_ancestors":[{"relation_name":"is_a","term_name":"snoRNA_encoding","termid":"SO:0000578"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C_D_box_snoRNA_encoding","synonyms":[{"name":"C/D box snoRNA encoding","type":"exact"}],"termid":"SO:0000585"}


id: PBO:0060606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear cap binding protein subunit 2","termid":"PBO:0060606"}


id: GO:2000133
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of tyramine signaling pathway.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of octopamine or tyramine signaling pathway","termid":"GO:2000127"},{"relation_name":"is_a","term_name":"regulation of tyramine signaling pathway","termid":"GO:2000131"},{"relation_name":"positively_regulates","term_name":"tyramine signaling pathway","termid":"GO:0071928"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of tyramine signaling pathway","synonyms":[{"name":"positive regulation of tyramine signalling pathway","type":"exact"}],"termid":"GO:2000133"}


id: GO:0031290
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues.","definition_xrefs":["GOC:ejs"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axon guidance","termid":"GO:0007411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"retinal ganglion cell axon guidance","synonyms":[{"name":"retinal ganglion cell axon pathfinding","type":"exact"}],"termid":"GO:0031290"}


id: PBO:0065926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rac family small GTPase 1","termid":"PBO:0065926"}


id: GO:0016749
data:
  {"annotated_genes":["SJAG_00097","SJAG_03961"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77363,91885],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003870"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a succinyl group to a nitrogen atom on the acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acyltransferase activity","termid":"GO:0016410"},{"relation_name":"is_a","term_name":"succinyltransferase activity","termid":"GO:0016748"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00097":null,"SJAG_03961":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016746","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"N-succinyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0016749","terms_by_termid":{"GO:0003870":null}}


id: PBO:0041908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cobalamin binding intrinsic factor","termid":"PBO:0041908"}


id: PR:O59702
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- clr6 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59702"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone deacetylase clr6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC36.05c","synonyms":[{"name":"Spom972h-clr6","type":"exact"},{"name":"cryptic loci regulator 6 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O59702"}


id: PBO:0031500
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cellular_response_to_pH","termid":"PBO:0031500"}


id: PBO:0091896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf meiotic drive poison Wtf4","termid":"PBO:0091896"}


id: PBO:0069703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 983, pseudogene","termid":"PBO:0069703"}


id: GO:0007257
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The initiation of the activity of the inactive enzyme JUN kinase (JNK).","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete activation of JUN kinase activity (obsolete GO:0007257)","synonyms":[{"name":"activation of SAPK activity","type":"broad"}],"termid":"GO:0007257"}


id: PBO:0087927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transferrin receptor-like protein; functions with Tre1p to regulate ubiquitination and vacuolar degradation of the metal transporter Smf1p; inviability of null mutant in systematic studies is due to proximity to CDC31; TRE2 has a paralog, TRE1, that arose from the whole genome duplication","termid":"PBO:0087927"}


id: GO:0071126
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphaV-beta6 integrin complex bound to osteopontin.","definition_xrefs":["PMID:16005200"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"alphaV-beta6 integrin-osteopontin complex","synonyms":[{"name":"ITGAV-ITGB6-SPP1 complex","type":"narrow"}],"termid":"GO:0071126"}


id: FYPO:0004539
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell contains more, and shorter, cytoplasmic microtubules than normal during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubules present in increased numbers","termid":"FYPO:0004538"},{"relation_name":"is_a","term_name":"short interphase microtubules","termid":"FYPO:0006103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002399","FYPO:0000002","FYPO:0001320","FYPO:0000054","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"short interphase microtubules present in increased numbers","synonyms":[{"name":"broken interphase microtubules","type":"related"},{"name":"short cytoplasmic microtubules present in increased numbers during interphase of mitotic cell cycle","type":"exact"},{"name":"short cytoplasmic microtubules present in increased numbers during mitotic interphase","type":"exact"},{"name":"short fragmented interphase microtubules","type":"related"},{"name":"short interphase cytoplasmic microtubules present in increased numbers","type":"exact"},{"name":"short interphase microtubules present in greater numbers","type":"exact"},{"name":"short interphase microtubules present in increased numbers during vegetative growth","type":"exact"}],"termid":"FYPO:0004539"}


id: PBO:0030959
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K9_dimethylation_at_centromere_outer_repeat","termid":"PBO:0030959"}


id: PBO:0048991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glypican 3","termid":"PBO:0048991"}


id: PATO:0000169
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organismal quality","termid":"PATO:0001995"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"viability","termid":"PATO:0000169"}


id: PBO:0058780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7114","termid":"PBO:0058780"}


id: PBO:0059818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 44","termid":"PBO:0059818"}


id: PBO:0068405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 224","termid":"PBO:0068405"}


id: GO:0021926
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of neuroblasts that will give rise to Golgi cells. A Golgi cell is an inhibitory GABAergic interneuron found in the cerebellar cortex.","definition_xrefs":["GOC:cls","PMID:15157725","GOC:dgh","GO_REF:0000021","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell proliferation in hindbrain ventricular zone","termid":"GO:0021923"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Golgi cell precursor proliferation","termid":"GO:0021926"}


id: PR:P0CT39
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- Tf2-6 gene.","definition_xrefs":["UniProtKB:P0CT39","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transposon Tf2-6 polyprotein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC27E2.08","synonyms":[{"name":"Spom972h-Tf2-6","type":"exact"},{"name":"retrotransposable element Tf2 155 kDa protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P0CT39"}


id: FYPO:0001874
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the preferential localization of a protein to either the old or new spindle pole body is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to mitotic spindle pole body","termid":"FYPO:0000939"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal asymmetric protein localization to old or new mitotic spindle pole body","synonyms":[{"name":"abnormal asymmetric protein localisation to old or new mitotic spindle pole body","type":"exact"},{"name":"abnormal asymmetric protein localization to old or new mitotic SPB","type":"exact"},{"name":"abnormal asymmetric protein localization to old or new mitotic spindle pole body during mitotic cell cycle","type":"related"},{"name":"abnormal asymmetric protein localization to old or new mitotic spindle pole body during vegetative growth","type":"exact"},{"name":"abnormal occurrence of normally asymmetric protein localization to old or new mitotic spindle pole body","type":"exact"}],"termid":"FYPO:0001874"}


id: PBO:0057064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 147a","termid":"PBO:0057064"}


id: PR:Q9USP4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug1 gene.","definition_xrefs":["UniProtKB:Q9USP4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 1 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC11E10.03","synonyms":[{"name":"Spom972h-mug1","type":"exact"}],"termid":"PR:Q9USP4"}


id: GO:0003702
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Functions to initiate or regulate RNA polymerase II transcription.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete RNA polymerase II transcription factor activity (obsolete GO:0003702)","synonyms":[{"name":"RNA polymerase II transcription factor activity","type":"exact"}],"termid":"GO:0003702"}


id: GO:0000938
data:
  {"annotated_genes":["SJAG_03963","SJAG_02811","SJAG_01645","SJAG_04902"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[91890,92987,93260,105269],"is_not":false,"summary":null,"term":"GO:0000938"}]},"cv_name":"cellular_component","definition":"A quatrefoil tethering complex required for retrograde traffic from the early endosome back to the late Golgi and biogenesis of cytoplasmic vesicles.","definition_xrefs":["PMID:12446664","PMID:10637310","PMID:12077354","GOC:rn","GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle tethering complex","termid":"GO:0099023"},{"relation_name":"part_of","term_name":"Golgi apparatus","termid":"GO:0005794"},{"relation_name":"part_of","term_name":"cytoplasmic vesicle","termid":"GO:0031410"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01645":null,"SJAG_02811":null,"SJAG_03963":null,"SJAG_04902":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005794","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"GARP complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Golgi associated retrograde protein complex","type":"exact"},{"name":"VFT tethering complex","type":"exact"},{"name":"Vps fifty three tethering complex","type":"exact"}],"termid":"GO:0000938","terms_by_termid":{"GO:0000938":null}}


id: SO:0001044
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A nuclear pseudogene of either coding or non-coding mitochondria derived sequence.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non_processed_pseudogene","termid":"SO:0001760"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear_mt_pseudogene","secondary_identifiers":["http://en.wikipedia.org/wiki/Numt"],"synonyms":[{"name":"NUMT","type":"exact"},{"name":"nuclear mitochondrial pseudogene","type":"exact"},{"name":"nuclear mt pseudogene","type":"exact"}],"termid":"SO:0001044"}


id: GO:0160150
data:
  {"annotated_genes":["SJAG_03572"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[102316],"is_not":false,"summary":null,"term":"GO:0160150"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: uridine(13) in tRNA = pseudouridine(13) in tRNA.","definition_xrefs":["EC:5.4.99.27"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA pseudouridine synthase activity","termid":"GO:0106029"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03572":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0016853","GO:0140101","GO:0140098","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"tRNA pseudouridine(13) synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:42540"],"termid":"GO:0160150","terms_by_termid":{"GO:0160150":null}}


id: PBO:0029156
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_telomere_length","termid":"PBO:0029156"}


id: PBO:0039769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aquaporin 4","termid":"PBO:0039769"}


id: PR:Q10085
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC11D3.06 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10085"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transporter C11D3.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11D3.06","synonyms":[{"name":"Spom972h-SPAC11D3.06","type":"exact"}],"termid":"PR:Q10085"}


id: PBO:0011116
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dynein LIc","termid":"PBO:0011116"}


id: MOD:00755
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes an iodine atom of a residue for a hydrogen atom.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"halogen containing residue","termid":"MOD:00694"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iodinated residue","synonyms":[{"name":"IRes","type":"exact"}],"termid":"MOD:00755"}


id: PBO:0084023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycosyltransferase involved in protein glycosylation; transfers GDP-mannose to methyl-alpha-mannoside in vitro; member of the KRE2/MNT1 mannosyltransferase family of type II membrane proteins with a short cytoplasmic N-terminus, a membrane-spanning region and a highly conserved catalytic lumenal domain","termid":"PBO:0084023"}


id: GO:0090591
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + N-acetyl-mannosamine(out) = protein histidine +N-acetyl- mannosamine-6-phosphate(in).","definition_xrefs":["PMID:9864311"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-N(PI)-phosphohistidine-sugar phosphotransferase activity","termid":"GO:0008982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0005215","GO:0016740","GO:0003824","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"protein-N(PI)-phosphohistidine-N-acetyl-mannosamine phosphotransferase system transporter activity","termid":"GO:0090591"}


id: GO:0030158
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a beta-D-xylosyl residue from UDP-D-xylose to the serine hydroxyl group of an acceptor protein substrate.","definition_xrefs":["EC:2.4.2.26"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-xylosyltransferase activity","termid":"GO:0035252"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0140096","GO:0016757","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"protein xylosyltransferase activity","secondary_identifiers":["RHEA:50192","Reactome:R-HSA-1878002","MetaCyc:2.4.2.26-RXN"],"synonyms":[{"name":"UDP-D-xylose:core protein beta-D-xylosyltransferase activity","type":"related"},{"name":"UDP-D-xylose:core protein xylosyltransferase activity","type":"related"},{"name":"UDP-D-xylose:protein beta-D-xylosyltransferase activity","type":"related"},{"name":"UDP-D-xylose:proteoglycan core protein beta-D-xylosyltransferase activity","type":"related"},{"name":"UDP-xylose-core protein beta-D-xylosyltransferase activity","type":"related"},{"name":"peptide O-xylosyltransferase activity","type":"exact"},{"name":"uridine diphosphoxylose-core protein beta-xylosyltransferase activity","type":"related"},{"name":"uridine diphosphoxylose-protein xylosyltransferase activity","type":"related"}],"termid":"GO:0030158"}


id: PBO:0090152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cul4-RING E3 complex WD repeat protein subunit Ddb1","termid":"PBO:0090152"}


id: PBO:0039414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Angelman syndrome chromosome region","termid":"PBO:0039414"}


id: GO:0046053
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving dAMP, deoxyadenosine monophosphate (2'-deoxyadenosine 5'-phosphate).","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine deoxyribonucleotide metabolic process","termid":"GO:0009151"},{"relation_name":"is_a","term_name":"purine deoxyribonucleoside monophosphate metabolic process","termid":"GO:0009170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"dAMP metabolic process","synonyms":[{"name":"dAMP metabolism","type":"exact"}],"termid":"GO:0046053"}


id: GO:0051293
data:
  {"annotated_genes":["SJAG_02695","SJAG_02737"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113033,93087],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000132"}]},"cv_name":"biological_process","definition":"The directed movement of the spindle to a specific location in the cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule cytoskeleton organization","termid":"GO:0000226"},{"relation_name":"is_a","term_name":"establishment of localization in cell","termid":"GO:0051649"},{"relation_name":"is_a","term_name":"spindle localization","termid":"GO:0051653"},{"relation_name":"is_a","term_name":"establishment of organelle localization","termid":"GO:0051656"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02695":null,"SJAG_02737":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0000226","GO:0007049","GO:0007010","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"establishment of spindle localization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"establishment of spindle localisation","type":"exact"},{"name":"spindle positioning","type":"exact"}],"termid":"GO:0051293","terms_by_termid":{"GO:0000132":null}}


id: GO:1904971
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of viral translation.","definition_xrefs":["GOC:bhm","GO_REF:0000058","GOC:TermGenie","PMID:19666601"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of viral process","termid":"GO:0050792"},{"relation_name":"regulates","term_name":"viral translation","termid":"GO:0019081"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of viral translation","synonyms":[{"name":"regulation of viral protein anabolism","type":"exact"},{"name":"regulation of viral protein biosynthesis","type":"exact"},{"name":"regulation of viral protein biosynthetic process","type":"exact"},{"name":"regulation of viral protein formation","type":"exact"},{"name":"regulation of viral protein synthesis","type":"exact"}],"termid":"GO:1904971"}


id: GO:1901407
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of phosphorylation of RNA polymerase II C-terminal domain.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of phosphorylation of RNA polymerase II C-terminal domain (obsolete GO:1901407)","synonyms":[{"name":"regulation of CTD domain phosphorylation of RNA polymerase II","type":"exact"},{"name":"regulation of generation of II(0) form of RNA polymerase II","type":"exact"},{"name":"regulation of generation of hyperphosphorylated CTD of RNA polymerase II","type":"exact"},{"name":"regulation of hyperphosphorylation of RNA polymerase II C-terminal domain","type":"exact"}],"termid":"GO:1901407"}


id: GO:0032882
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving chitin.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of polysaccharide metabolic process","termid":"GO:0032881"},{"relation_name":"regulates","term_name":"chitin metabolic process","termid":"GO:0006030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"regulation of chitin metabolic process","synonyms":[{"name":"regulation of chitin metabolism","type":"exact"}],"termid":"GO:0032882"}


id: PR:O14123
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sod22 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14123"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Na(+)/H(+) antiporter C3A11.09 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3A11.09","synonyms":[{"name":"Spom972h-sod22","type":"exact"}],"termid":"PR:O14123"}


id: GO:0032370
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipid transport","termid":"GO:0032368"},{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"positive regulation of lipid localization","termid":"GO:1905954"},{"relation_name":"positively_regulates","term_name":"lipid transport","termid":"GO:0006869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of lipid transport","synonyms":[{"name":"activation of lipid transport","type":"narrow"},{"name":"stimulation of lipid transport","type":"narrow"},{"name":"up regulation of lipid transport","type":"exact"},{"name":"up-regulation of lipid transport","type":"exact"},{"name":"upregulation of lipid transport","type":"exact"}],"termid":"GO:0032370"}


id: GO:0045615
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of plasmatocyte differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of hemocyte differentiation","termid":"GO:0045612"},{"relation_name":"is_a","term_name":"regulation of plasmatocyte differentiation","termid":"GO:0045613"},{"relation_name":"positively_regulates","term_name":"plasmatocyte differentiation","termid":"GO:0042387"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of plasmatocyte differentiation","synonyms":[{"name":"activation of plasmatocyte differentiation","type":"narrow"},{"name":"stimulation of plasmatocyte differentiation","type":"narrow"},{"name":"up regulation of plasmatocyte differentiation","type":"exact"},{"name":"up-regulation of plasmatocyte differentiation","type":"exact"},{"name":"upregulation of plasmatocyte differentiation","type":"exact"}],"termid":"GO:0045615"}


id: PBO:0042348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD83 molecule","termid":"PBO:0042348"}


id: PBO:0003990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO E1-like activator enzyme Fub2 (predicted)","termid":"PBO:0003990"}


id: GO:0046836
data:
  {"annotated_genes":["SJAG_02897","SJAG_03774"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108654,90529],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034203"}]},"cv_name":"biological_process","definition":"The directed movement of glycolipids, compounds containing (usually) 1-4 linked monosaccharide residues joined by a glycosyl linkage to a lipid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid transport","termid":"GO:0006869"},{"relation_name":"is_a","term_name":"carbohydrate derivative transport","termid":"GO:1901264"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02897":null,"SJAG_03774":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"glycolipid transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0046836","terms_by_termid":{"GO:0034203":null}}


id: GO:0097084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process aimed at the progression of a vascular smooth muscle cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. A vascular smooth muscle cell is a non-striated, elongated, spindle-shaped cell found lining the blood vessels.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscle cell development","termid":"GO:0055001"},{"relation_name":"part_of","term_name":"vascular associated smooth muscle cell differentiation","termid":"GO:0035886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vascular associated smooth muscle cell development","synonyms":[{"name":"vascular smooth muscle cell development","type":"exact"}],"termid":"GO:0097084"}


id: PBO:0018054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase Slh1, human ASCC3 ortholog (predicted)","termid":"PBO:0018054"}


id: FYPO:0002299
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which all cells in a population are inviable germinated spores with curved germ tubes, and in which some cells divide once and others do not divide. In the cells that divide once, an inviable cell forms from the growing end of the germ tube, but does not divide further.","definition_xrefs":["PomBase:mah","PomBase:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable mixed population including divided and undivided germinated spores, with curved germ tubes (obsolete FYPO:0002299)","termid":"FYPO:0002299"}


id: GO:0002537
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The synthesis or release of nitric oxide following a stimulus as part of an inflammatory response, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"production of molecular mediator involved in inflammatory response","termid":"GO:0002532"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nitric oxide production involved in inflammatory response","synonyms":[{"name":"nitric oxide production involved in acute inflammatory response","type":"broad"},{"name":"production of nitric oxide involved in acute inflammatory response","type":"broad"},{"name":"production of nitric oxide involved in inflammatory response","type":"exact"}],"termid":"GO:0002537"}


id: PBO:0000804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S15a (predicted)","termid":"PBO:0000804"}


id: PBO:0080551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WBP1L pseudogene 10","termid":"PBO:0080551"}


id: PBO:0087630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the DSC ubiquitin ligase complex; golgi-localized RING-finger ubiquitin ligase (E3) involved in sorting polar transmembrane domain containing membrane proteins to multivesicular bodies for delivery to the vacuole; proposed involvement in the quality control of misfolded TMD containing proteins; ortholog of fission yeast dsc1","termid":"PBO:0087630"}


id: GO:0045900
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of translational elongation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of translational elongation","termid":"GO:0006448"},{"relation_name":"is_a","term_name":"negative regulation of translation","termid":"GO:0017148"},{"relation_name":"negatively_regulates","term_name":"translational elongation","termid":"GO:0006414"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of translational elongation","synonyms":[{"name":"down regulation of translational elongation","type":"exact"},{"name":"down-regulation of translational elongation","type":"exact"},{"name":"downregulation of translational elongation","type":"exact"},{"name":"inhibition of translational elongation","type":"narrow"}],"termid":"GO:0045900"}


id: PBO:0029580
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_population_growth_at_low_temperature","termid":"PBO:0029580"}


id: GO:0036021
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by the membrane of an endolysosome. An endolysosome is a transient hybrid organelle formed by fusion of a late endosome with a lysosome.","definition_xrefs":["GOC:pde"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endosome lumen","termid":"GO:0031904"},{"relation_name":"is_a","term_name":"lysosomal lumen","termid":"GO:0043202"},{"relation_name":"part_of","term_name":"endolysosome","termid":"GO:0036019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005773"},{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005575","GO:0005773","GO:0005737","GO:0005768","GO:0031410"],"is_obsolete":false,"name":"endolysosome lumen","synonyms":[{"name":"endolysosomal lumen","type":"exact"}],"termid":"GO:0036021"}


id: PBO:0057503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 621","termid":"PBO:0057503"}


id: PR:Q5FC18
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sgf11 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q5FC18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA-associated factor 11 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC57A10.14","synonyms":[{"name":"Spom972h-sgf11","type":"exact"}],"termid":"PR:Q5FC18"}


id: PBO:0069419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 681, pseudogene","termid":"PBO:0069419"}


id: GO:0048035
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of heme O, a derivative of heme containing a 17-carbon hydroxyethylfarnesyl side chain at position 8 of the tetrapyrrole macrocycle.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heme catabolic process","termid":"GO:0042167"},{"relation_name":"is_a","term_name":"heme O metabolic process","termid":"GO:0048033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"heme O catabolic process","synonyms":[{"name":"haem O catabolic process","type":"exact"},{"name":"haem O catabolism","type":"exact"},{"name":"heme O breakdown","type":"exact"},{"name":"heme O catabolism","type":"exact"},{"name":"heme O degradation","type":"exact"}],"termid":"GO:0048035"}


id: GO:0072003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of a kidney rudiment from unspecified parts. A kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"kidney morphogenesis","termid":"GO:0060993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"kidney rudiment formation","synonyms":[{"name":"kidney anlage formation","type":"related"}],"termid":"GO:0072003"}


id: PBO:0057638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1228","termid":"PBO:0057638"}


id: PBO:0041782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcyphosine","termid":"PBO:0041782"}


id: GO:0045584
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of cytotoxic T cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of T cell differentiation","termid":"GO:0045581"},{"relation_name":"is_a","term_name":"regulation of cytotoxic T cell differentiation","termid":"GO:0045583"},{"relation_name":"negatively_regulates","term_name":"cytotoxic T cell differentiation","termid":"GO:0045065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of cytotoxic T cell differentiation","synonyms":[{"name":"down regulation of cytotoxic T cell differentiation","type":"exact"},{"name":"down-regulation of cytotoxic T cell differentiation","type":"exact"},{"name":"downregulation of cytotoxic T cell differentiation","type":"exact"},{"name":"inhibition of cytotoxic T cell differentiation","type":"narrow"},{"name":"negative regulation of cytotoxic T cell development","type":"related"},{"name":"negative regulation of cytotoxic T lymphocyte differentiation","type":"exact"},{"name":"negative regulation of cytotoxic T-cell differentiation","type":"exact"},{"name":"negative regulation of cytotoxic T-lymphocyte differentiation","type":"exact"}],"termid":"GO:0045584"}


id: PBO:0074037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 22","termid":"PBO:0074037"}


id: PBO:0040379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase peripheral stalk subunit OSCP","termid":"PBO:0040379"}


id: PATO:0001506
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's separation of normally joined parts, such as the separation of adjacent bones without fracture or of certain abdominal muscles during pregnancy.","definition_xrefs":["answers.com:answers.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"separated from","termid":"PATO:0001505"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diastatic","termid":"PATO:0001506"}


id: PBO:0076304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptogyrin 2","termid":"PBO:0076304"}


id: GO:0042920
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of 3-hydroxyphenylpropionic acid across a lipid bilayer, from one side of a membrane to the other.","definition_xrefs":["PMID:9098055","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transport","termid":"GO:0015718"},{"relation_name":"is_a","term_name":"organic hydroxy compound transport","termid":"GO:0015850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"3-hydroxyphenylpropionic acid transmembrane transport","synonyms":[{"name":"3-(3-hydroxyphenyl)propionic acid transport","type":"exact"},{"name":"3-hydroxyphenylpropionic acid transport","type":"broad"},{"name":"m-hydroxyphenylpropionic acid transport","type":"exact"}],"termid":"GO:0042920"}


id: GO:1903557
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of tumor necrosis factor superfamily cytokine production.","definition_xrefs":["GO_REF:0000058","PMID:24187568","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of tumor necrosis factor superfamily cytokine production","termid":"GO:1903555"},{"relation_name":"positively_regulates","term_name":"tumor necrosis factor superfamily cytokine production","termid":"GO:0071706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of tumor necrosis factor superfamily cytokine production","synonyms":[{"name":"activation of TNF superfamily production","type":"related"},{"name":"activation of TNFSF cytokine production","type":"narrow"},{"name":"activation of tumor necrosis factor superfamily cytokine production","type":"narrow"},{"name":"positive regulation of TNF superfamily production","type":"related"},{"name":"positive regulation of TNFSF cytokine production","type":"exact"},{"name":"up regulation of TNF superfamily production","type":"related"},{"name":"up regulation of TNFSF cytokine production","type":"exact"},{"name":"up regulation of tumor necrosis factor superfamily cytokine production","type":"exact"},{"name":"up-regulation of TNF superfamily production","type":"related"},{"name":"up-regulation of TNFSF cytokine production","type":"exact"},{"name":"up-regulation of tumor necrosis factor superfamily cytokine production","type":"exact"},{"name":"upregulation of TNF superfamily production","type":"related"},{"name":"upregulation of TNFSF cytokine production","type":"exact"},{"name":"upregulation of tumor necrosis factor superfamily cytokine production","type":"exact"}],"termid":"GO:1903557"}


id: PBO:0109613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NHS like 3","termid":"PBO:0109613"}


id: PBO:0069335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 595, pseudogene","termid":"PBO:0069335"}


id: PBO:0083983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glutamine-fructose-6-phosphate amidotransferase; catalyzes the formation of glucosamine-6-P and glutamate from fructose-6-P and glutamine in the first step of chitin biosynthesis; GFA1 has a paralogous region, comprising ORFs YMR084W-YMR085W, that arose from the whole genome duplication","termid":"PBO:0083983"}


id: GO:0047011
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-pantolactone + NADP+ = 2-dehydropantolactone + NADPH + H+. The reaction is A-specific (i.e. the pro-R hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to NADP+.","definition_xrefs":["EC:1.1.1.168","MetaCyc:1.1.1.168-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-dehydropantolactone reductase activity","termid":"GO:0036441"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"2-dehydropantolactone reductase (A-specific) activity","synonyms":[{"name":"(R)-pantolactone:NADP+ oxidoreductase (A-specific)","type":"related"},{"name":"2-dehydropantoyl-lactone reductase (A-specific) activity","type":"related"},{"name":"2-ketopantoyl lactone reductase activity","type":"broad"},{"name":"2-oxopantoyl lactone reductase","type":"broad"},{"name":"ketopantoyl lactone reductase activity","type":"broad"}],"termid":"GO:0047011"}


id: PBO:0040390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting V1 subunit C2","termid":"PBO:0040390"}


id: PBO:0072035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 5","termid":"PBO:0072035"}


id: PATO:0002128
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering a bearer by virtue of the bearer's containing or resembling serum.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"composition","termid":"PATO:0000025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serous","termid":"PATO:0002128"}


id: PBO:0089896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trans-aconitate 3-methyltransferase","termid":"PBO:0089896"}


id: FYPO:0004788
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype in which the phosphorylation of serine residues in one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal when the cell is subject to glucose starvation.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete increased protein serine phosphorylation during glucose starvation (obsolete FYPO:0004788)","synonyms":[{"name":"increased peptidyl-serine phosphorylation during glucose starvation","type":"exact"},{"name":"increased protein serine phosphorylation during cellular response to glucose starvation","type":"exact"},{"name":"increased protein serine phosphorylation during glucose depletion","type":"exact"},{"name":"increased protein serine phosphorylation during glucose deprivation","type":"exact"},{"name":"increased protein serine phosphorylation during glucose limitation","type":"related"},{"name":"increased serine phosphorylation during glucose starvation","type":"exact"}],"termid":"FYPO:0004788"}


id: GO:0021919
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to a receptor on the surface of a target cell, which contributes to the spatial identity of regions along the dorsal-ventral axis of the spinal cord.","definition_xrefs":["GOC:dgh","GOC:dph","GOC:jid","PMID:12593981","GOC:cls","GO_REF:0000021"],"gene_count":0,"genotype_count":0,"name":"obsolete BMP signaling pathway involved in spinal cord dorsal/ventral patterning (obsolete GO:0021919)","synonyms":[{"name":"BMP signaling pathway in spinal cord dorsoventral patterning","type":"exact"},{"name":"BMP signaling pathway involved in spinal cord dorsal-ventral patterning","type":"exact"},{"name":"BMP signalling pathway involved in spinal cord dorsal-ventral patterning","type":"exact"},{"name":"bone morphogenetic protein signaling pathway in spinal cord dorsal-ventral patterning","type":"exact"},{"name":"bone morphogenetic protein signalling pathway involved in spinal cord dorsal-ventral patterning","type":"exact"}],"termid":"GO:0021919"}


id: GO:0004780
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ADP + H+ + sulfate = 5'-adenylyl sulfate + phosphate.","definition_xrefs":["EC:2.7.7.5","RHEA:16529"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfate adenylyltransferase activity","termid":"GO:0004779"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016779"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016779","GO:0016740"],"is_obsolete":false,"name":"sulfate adenylyltransferase (ADP) activity","secondary_identifiers":["KEGG_REACTION:R00530","MetaCyc:SULFATE-ADENYLYLTRANSFERASE-ADP-RXN"],"synonyms":[{"name":"ADP-sulfurylase activity","type":"related"},{"name":"ADP:sulfate adenylyltransferase activity","type":"exact"},{"name":"adenosine diphosphate sulfurylase activity","type":"related"},{"name":"sulfate (adenosine diphosphate) adenylyltransferase activity","type":"related"},{"name":"sulphate adenylyltransferase (ADP) activity","type":"exact"}],"termid":"GO:0004780"}


id: PBO:0067980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 282","termid":"PBO:0067980"}


id: GO:0045302
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholan-24-oylglycine + H2O = 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholanate + glycine.","definition_xrefs":["EC:3.5.1.24"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016810","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"choloylglycine hydrolase activity","secondary_identifiers":["RHEA:19353","MetaCyc:CHOLOYLGLYCINE-HYDROLASE-RXN"],"synonyms":[{"name":"3alpha,7alpha,12alpha-trihydroxy-5beta-cholan-24-oylglycine amidohydrolase activity","type":"related"},{"name":"bile salt hydrolase activity","type":"related"},{"name":"choloyltaurine hydrolase activity","type":"related"},{"name":"glycocholase activity","type":"related"}],"termid":"GO:0045302"}


id: PBO:0046342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ectonucleotide pyrophosphatase/phosphodiesterase 7","termid":"PBO:0046342"}


id: PBO:0071086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 88","termid":"PBO:0071086"}


id: PBO:0013815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beige protein homolog Lvs1 (predicted)","termid":"PBO:0013815"}


id: PBO:0048564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgi associated, gamma adaptin ear containing, ARF binding protein 2","termid":"PBO:0048564"}


id: SO:0000908
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute to describe a feature that has been predicted using sequence similarity of a known domain.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"supported_by_sequence_similarity","termid":"SO:0000907"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"supported_by_domain_match","synonyms":[{"name":"supported by domain match","type":"exact"}],"termid":"SO:0000908"}


id: _global:characteristic_of_part_of
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.","direct_ancestors":[{"relation_name":"is_a","term_name":"depends_on","termid":"_global:depends_on"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"characteristic_of_part_of","secondary_identifiers":["RO:0002314"],"termid":"_global:characteristic_of_part_of"}


id: PBO:0040775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bestrophin 1","termid":"PBO:0040775"}


id: MOD:00670
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with an acyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acylated residue","termid":"MOD:00649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N-acylated residue","synonyms":[{"name":"NAcylRes","type":"exact"}],"termid":"MOD:00670"}


id: PBO:0075887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2","termid":"PBO:0075887"}


id: GO:0052765
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 reduced coenzyme F420 + O2 = 2 coenzyme F420 + 2 H2O.","definition_xrefs":["GOC:mengo_curators","PMID:15340796"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"reduced coenzyme F420 oxidase activity","synonyms":[{"name":"F420H2 oxidase activity","type":"exact"},{"name":"F420H2:oxygen oxidoreductase activity","type":"exact"},{"name":"coenzyme F420H2 oxidase activity","type":"exact"}],"termid":"GO:0052765"}


id: PBO:0059539
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded transcription factor binding site Y","termid":"PBO:0059539"}


id: PBO:0050512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeobox C12","termid":"PBO:0050512"}


id: GO:1903110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of single-strand break repair via homologous recombination.","definition_xrefs":["GOC:TermGenie","PMID:24339919","GO_REF:0000058","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA recombination","termid":"GO:0000018"},{"relation_name":"is_a","term_name":"regulation of single strand break repair","termid":"GO:1903516"},{"relation_name":"regulates","term_name":"single-strand break repair via homologous recombination","termid":"GO:1990396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006281"},{"rel_name":"regulates","termid":"GO:0006310"}],"interesting_parent_ids":["GO:0006259","GO:0006281","GO:0006310","GO:0008150"],"is_obsolete":false,"name":"regulation of single-strand break repair via homologous recombination","termid":"GO:1903110"}


id: GO:0006806
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete insecticide resistance (obsolete GO:0006806)","synonyms":[{"name":"insecticide resistance","type":"exact"}],"termid":"GO:0006806"}


id: PBO:0064152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plakophilin 4","termid":"PBO:0064152"}


id: FYPO:0001242
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to adenine starvation is higher than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0006551","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased RNA level during cellular response to adenine starvation","synonyms":[{"name":"increased RNA accumulation during cellular response to adenine starvation","type":"related"},{"name":"increased RNA level during cellular response to adenine depletion","type":"exact"},{"name":"increased RNA level during cellular response to adenine deprivation","type":"exact"},{"name":"increased RNA level during cellular response to adenine starvation during mitotic cell cycle","type":"related"},{"name":"increased RNA level during cellular response to adenine starvation during vegetative growth","type":"exact"},{"name":"increased mRNA level during cellular response to adenine starvation","type":"narrow"},{"name":"increased transcript level during cellular response to adenine starvation","type":"exact"}],"termid":"FYPO:0001242"}


id: PBO:0088303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Tlg1","termid":"PBO:0088303"}


id: PBO:0085760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein kinase involved in the cell cycle checkpoint into anaphase; in complex with Mad1p and Bub3p, prevents progression into anaphase in presence of spindle damage; Cdc28p-mediated phosphorylation at Bub1p-T566 is important for degradation in anaphase and adaptation of checkpoint to prolonged mitotic arrest; associates with centromere DNA via Skp1p; involved in Sgo1p relocalization in response to sister kinetochore tension; paralog MAD3 arose from whole genome duplication","termid":"PBO:0085760"}


id: FYPO:0004799
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the second meiotic nuclear division does not occur during a cycle of zygotic meiosis and sporulation. Zygotic meiosis and sporulation take place under conditions of continuous nitrogen starvation, in which haploid cells of the opposite mating types conjugate to form diploid zygotes that proceed immediately to undergo meiosis and sporulation.","definition_xrefs":["PMID:25891897","PMID:22558440","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished meiosis II","termid":"FYPO:0003379"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000631","FYPO:0001985"],"is_obsolete":false,"name":"abolished zygotic meiosis II","synonyms":[{"name":"abolished meiosis II during zygotic meiosis","type":"exact"},{"name":"abolished zygotic second meiotic nuclear division","type":"exact"}],"termid":"FYPO:0004799"}


id: PBO:0055614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3053","termid":"PBO:0055614"}


id: PBO:0063258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin beta 4","termid":"PBO:0063258"}


id: GO:0099620
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-4-amino-4-deoxy-beta-L-arabinopyranose + 2-oxoglutarate = UDP-beta-L-threo-pentapyranos-4-ulose + L-glutamate.","definition_xrefs":["GOC:dos","PMID:12704196","GOC:al","PMID:12429098"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016769","GO:0016740"],"is_obsolete":false,"name":"UDP-4-amino-4-deoxy-L-arabinose aminotransferase","secondary_identifiers":["RHEA:24710","EC:2.6.1.87"],"synonyms":[{"name":"UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase","type":"exact"},{"name":"UDP-4-amino-4-deoxy-L-arabinose---oxoglutarate aminotransferase","type":"exact"},{"name":"UDP-4-amino-4-deoxy-beta-L-arabinose:2-oxoglutarate aminotransferase","type":"exact"},{"name":"UDP-Ara4O aminotransferase","type":"exact"},{"name":"UDP-L-Ara4N transaminase","type":"exact"}],"termid":"GO:0099620"}


id: GO:0009377
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the ATP-dependent hydrolysis of peptide bonds in substrates including E. coli SulA and misfolded proteins.","definition_xrefs":["GOC:mah","PMID:10368141"],"gene_count":0,"genotype_count":0,"name":"obsolete HslUV protease activity (obsolete GO:0009377)","synonyms":[{"name":"HslUV protease activity","type":"exact"}],"termid":"GO:0009377"}


id: PBO:0055806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysophosphatidylcholine acyltransferase 2","termid":"PBO:0055806"}


id: PBO:0087377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STE20-family GCKIII protein kinase; required for prospore membrane closure, efficient spore packaging, and localization of enzymes involved in spore wall synthesis; component of a non-canonical Hippo pathway with Cdc15p involved in spindle disassembly and sustained release of Cdc14p during anaphase II; forms a complex with Cdc15p;  phosphorylation requires Cdc15p; required for Ssp1p phosphorylation and turnover; interacts with 14-3-3 proteins; expressed in late meiosis; nuclear and cytoplasmic","termid":"PBO:0087377"}


id: PBO:0072399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S27 pseudogene 4","termid":"PBO:0072399"}


id: GO:0015753
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which D-xylose is transported across a lipid bilayer, from one side of a membrane to the other. D-xylose (the naturally occurring enantiomer is always D-) is a constituent of plant polysaccharides.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentose transmembrane transport","termid":"GO:0015750"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"D-xylose transmembrane transport","synonyms":[{"name":"D-xylose transport","type":"related"}],"termid":"GO:0015753"}


id: PBO:0044541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DXZ4 associated non-coding transcript 2, distal","termid":"PBO:0044541"}


id: PBO:0052816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 82","termid":"PBO:0052816"}


id: PBO:0086254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that positively regulates actin assembly; forms a homodimer and interacts with G-actin; localization to the bud neck and bud tip requires Spa2p; YFR016C is not an essential gene","termid":"PBO:0086254"}


id: PBO:0108893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL7L1 pseudogene 6","termid":"PBO:0108893"}


id: PBO:0086402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative FAD transporter, similar to Flc1p and Flc2p; localized to the ER; FLC3 has a paralog, FLC1, that arose from the whole genome duplication","termid":"PBO:0086402"}


id: PBO:0039746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apolipoprotein M","termid":"PBO:0039746"}


id: PBO:0036493
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26 copies of a 35 amino acid repeat","termid":"PBO:0036493"}


id: PBO:0047872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(3)(p24.2)","termid":"PBO:0047872"}


id: GO:0019288
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate.","definition_xrefs":["GOC:go_curators","PMID:18948055","MetaCyc:NONMEVIPP-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isopentenyl diphosphate biosynthetic process","termid":"GO:0009240"},{"relation_name":"is_a","term_name":"glyceraldehyde-3-phosphate metabolic process","termid":"GO:0019682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"part_of","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway","synonyms":[{"name":"isopentenyl diphosphate anabolism, mevalonate-independent pathway","type":"exact"},{"name":"isopentenyl diphosphate biosynthesis, mevalonate-independent","type":"exact"},{"name":"isopentenyl diphosphate biosynthesis, non-mevalonate pathway","type":"exact"},{"name":"isopentenyl diphosphate biosynthetic process via 1-deoxy-D-xylulose 5-phosphate","type":"exact"},{"name":"isopentenyl diphosphate biosynthetic process, MEP pathway","type":"exact"},{"name":"isopentenyl diphosphate biosynthetic process, mevalonate-independent","type":"exact"},{"name":"isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway","type":"exact"},{"name":"isopentenyl diphosphate biosynthetic process, non-mevalonate pathway","type":"exact"},{"name":"isopentenyl diphosphate formation, mevalonate-independent pathway","type":"exact"},{"name":"isopentenyl diphosphate synthesis, mevalonate-independent pathway","type":"exact"},{"name":"mevalonate-independent isopentenyl diphosphate biosynthesis","type":"exact"},{"name":"mevalonate-independent isopentenyl diphosphate biosynthetic process","type":"exact"},{"name":"non-MVA pathway","type":"exact"}],"termid":"GO:0019288"}


id: GO:0001648
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A G protein-coupled receptor activity that is activated by cleavage by a serine protease, exposing a tethered ligand corresponding to the new N-terminus, which binds to the receptor and activates it.","definition_xrefs":["GOC:mah","PMID:33742547","PMID:11356985"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled peptide receptor activity","termid":"GO:0008528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"proteinase-activated receptor activity","synonyms":[{"name":"protease-activated receptor activity","type":"exact"},{"name":"proteinase activated receptor activity","type":"exact"}],"termid":"GO:0001648"}


id: GO:0018954
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving pentaerythritol tetranitrate, C(CH2-O-NO2)4, a substance produced for use as an explosive and a vasodilator.","definition_xrefs":["UM-BBD_pathwayID:petn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic metabolic process","termid":"GO:0006805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pentaerythritol tetranitrate metabolic process","synonyms":[{"name":"pentaerythritol tetranitrate metabolism","type":"exact"}],"termid":"GO:0018954"}


id: PBO:0109005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STAG3 cohesin complex component like 3 (pseudogene)","termid":"PBO:0109005"}


id: PBO:0002529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABC transporter Ybt1","termid":"PBO:0002529"}


id: PBO:0065488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome activator subunit 3","termid":"PBO:0065488"}


id: PBO:0048272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polypeptide N-acetylgalactosaminyltransferase 9","termid":"PBO:0048272"}


id: GO:0018314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The covalent cross-linking of pyrroloquinoline-quinone to peptidyl-glutamic acid and peptidyl-tyrosine.","definition_xrefs":["RESID:AA0283","PMID:7665488"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-pyrroloquinoline-quinone linkage (obsolete GO:0018314)","synonyms":[{"name":"protein-pyrroloquinoline-quinone linkage","type":"exact"}],"termid":"GO:0018314"}


id: GO:0006568
data:
  {"annotated_genes":["SJAG_01455"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99605],"is_not":false,"summary":null,"term":"GO:0006568"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"indolalkylamine metabolic process","termid":"GO:0006586"},{"relation_name":"is_a","term_name":"aromatic amino acid metabolic process","termid":"GO:0009072"},{"relation_name":"is_a","term_name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process","termid":"GO:1902221"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01455":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"tryptophan metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Tryptophan"],"synonyms":[{"name":"tryptophan metabolism","type":"exact"}],"termid":"GO:0006568","terms_by_termid":{"GO:0006568":null}}


id: PBO:0028500
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_amitrole","termid":"PBO:0028500"}


id: PBO:0005221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII cargo receptor subunit Sec23a (predicted)","termid":"PBO:0005221"}


id: GO:0016516
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that binds interleukin-4 (IL-4) and consists of an alpha chain that binds IL-4 with high affinity and a gamma common chain that also forms part of the interleukin-2 receptor.","definition_xrefs":["PMID:10358772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"interleukin-4 receptor complex","synonyms":[{"name":"IL-4 receptor complex","type":"exact"}],"termid":"GO:0016516"}


id: PBO:0089053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tricalbin, C2 domain protein (phospholipid binding) ER-plasma membrane tethering protein Tcb3","termid":"PBO:0089053"}


id: PBO:0084842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosomal protein of the large subunit; conserved in metazoa, with similarity to human mitochondrial ribosomal protein MRPL49","termid":"PBO:0084842"}


id: GO:0004037
data:
  {"annotated_genes":["SJAG_00035"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[88556],"is_not":false,"summary":null,"term":"GO:0004037"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: allantoate + H2O = (S)-ureidoglycolate + urea.","definition_xrefs":["EC:3.5.3.4","RHEA:11016"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00035":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016810","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"allantoicase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:ALLANTOICASE-RXN","KEGG_REACTION:R02422"],"synonyms":[{"name":"allantoate amidinohydrolase activity","type":"related"},{"name":"allantoine amidinohydrolase activity","type":"exact"}],"termid":"GO:0004037","terms_by_termid":{"GO:0004037":null}}


id: GO:0031923
data:
  {"annotated_genes":["SJAG_02962","SJAG_02152","SJAG_03652","SJAG_03808"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86260,113550,86261,114813],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903092"}]},"cv_name":"biological_process","definition":"The directed movement of pyridoxine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic hydroxy compound transport","termid":"GO:0015850"},{"relation_name":"is_a","term_name":"vitamin B6 transport","termid":"GO:0031919"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02152":null,"SJAG_02962":null,"SJAG_03652":null,"SJAG_03808":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"pyridoxine transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0031923","terms_by_termid":{"GO:1903092":null}}


id: PBO:0027204
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_rate_of_microtubule_depolymerization_at_minus_end","termid":"PBO:0027204"}


id: GO:0048597
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the eye are generated and organized during post-embryonic development.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-embryonic eye morphogenesis","termid":"GO:0048050"},{"relation_name":"part_of","term_name":"post-embryonic camera-type eye development","termid":"GO:0031077"},{"relation_name":"part_of","term_name":"camera-type eye morphogenesis","termid":"GO:0048593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"post-embryonic camera-type eye morphogenesis","synonyms":[{"name":"post-embryonic camera-style eye morphogenesis","type":"exact"},{"name":"post-embryonic eye morphogenesis","type":"broad"}],"termid":"GO:0048597"}


id: GO:0007615
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The memory process that results in the formation of consolidated memory resistant to disruption of the patterned activity of the brain, without requiring protein synthesis.","definition_xrefs":["PMID:17088531","PMID:15143285"],"direct_ancestors":[{"relation_name":"is_a","term_name":"memory","termid":"GO:0007613"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anesthesia-resistant memory","termid":"GO:0007615"}


id: GO:0043696
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a specialized structure (cell, tissue or organ) loses structural or functional features that characterize it in the mature organism, or some other relatively stable phase of the organism's life history. Under certain conditions, these structures can revert back to the features of their ancestors.","definition_xrefs":["GOC:dph","GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process","termid":"GO:0032502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dedifferentiation","secondary_identifiers":["Wikipedia:Cellular_differentiation#Dedifferentiation"],"termid":"GO:0043696"}


id: GO:0061112
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of bud outgrowth involved in lung branching.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental growth","termid":"GO:0048640"},{"relation_name":"is_a","term_name":"negative regulation of branching involved in lung morphogenesis","termid":"GO:0061048"},{"relation_name":"negatively_regulates","term_name":"bud outgrowth involved in lung branching","termid":"GO:0060447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of bud outgrowth involved in lung branching","termid":"GO:0061112"}


id: PBO:0001379
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.4.2.8","termid":"PBO:0001379"}


id: PBO:0085955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; null mutant lacks mitochondrial DNA and cannot grow on glycerol; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies","termid":"PBO:0085955"}


id: FYECO:0000013
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Any experimental condition that describes a defined growth medium, i.e. one in which all constituent substances and their concentrations are known.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping growth medium","termid":"FYECO:0000009"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"grouping defined medium","termid":"FYECO:0000013"}


id: PR:Q9Y704
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mok14 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y704"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall alpha-1,3-glucan synthase mok14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC63.04","synonyms":[{"name":"Spom972h-mok14","type":"exact"}],"termid":"PR:Q9Y704"}


id: PBO:0042173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cellular communication network factor 3","termid":"PBO:0042173"}


id: GO:0061504
data:
  {"annotated_genes":["SJAG_02084"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88006],"is_not":false,"summary":null,"term":"GO:0061504"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cyclic threonylcarbamoyladenosine, a modified nucleoside found in some tRNA molecules.","definition_xrefs":["PMID:23242255"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA modification","termid":"GO:0006400"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02084":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0006399","GO:0008150"],"is_obsolete":false,"name":"cyclic threonylcarbamoyladenosine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0061504","terms_by_termid":{"GO:0061504":null}}


id: GO:1990403
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process occurring during the embryonic phase whose specific outcome is the progression of the brain over time, from its formation to the mature structure.","definition_xrefs":["PMID:15918910"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic organ development","termid":"GO:0048568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic brain development","termid":"GO:1990403"}


id: PBO:0050343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 45","termid":"PBO:0050343"}


id: GO:0032296
data:
  {"annotated_genes":["SJAG_03689","SJAG_04369","SJAG_01463","SJAG_02156","SJAG_04019","SJAG_04527"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[98280,104589],"is_not":false,"summary":null,"term":"GO:0032296"},{"annotations":[99547,105940,72468,112087,98282],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004525"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of phosphodiester bonds in double-stranded RNA molecules.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA nuclease activity","termid":"GO:0004540"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01463":null,"SJAG_02156":null,"SJAG_03689":null,"SJAG_04019":null,"SJAG_04369":null,"SJAG_04527":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016788","GO:0003674","GO:0003824","GO:0140098","GO:0016787"],"is_obsolete":false,"name":"double-stranded RNA-specific ribonuclease activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"double-stranded RNA-specific RNase activity","type":"exact"},{"name":"dsRNA-specific RNase activity","type":"exact"},{"name":"dsRNA-specific ribonuclease activity","type":"exact"}],"termid":"GO:0032296","terms_by_termid":{"GO:0004525":null,"GO:0032296":null}}


id: GO:0048313
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The partitioning of Golgi apparatus between daughter cells at cell division.","definition_xrefs":["GOC:jid","PMID:12851069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi organization","termid":"GO:0007030"},{"relation_name":"is_a","term_name":"organelle inheritance","termid":"GO:0048308"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Golgi inheritance","synonyms":[{"name":"Golgi apparatus inheritance","type":"exact"},{"name":"Golgi division","type":"exact"},{"name":"Golgi partitioning","type":"exact"}],"termid":"GO:0048313"}


id: PBO:0040501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aurora kinase B","termid":"PBO:0040501"}


id: PBO:0072555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras related GTP binding A pseudogene 1","termid":"PBO:0072555"}


id: GO:0075254
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of uredospore formation, a process in which an asexual, dikaryotic, often rusty-colored spore, is formed in a structure called a uredinium.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of asexual sporulation resulting in formation of a cellular spore","termid":"GO:0043944"},{"relation_name":"is_a","term_name":"regulation of uredospore formation","termid":"GO:0075252"},{"relation_name":"negatively_regulates","term_name":"uredospore formation","termid":"GO:0075251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of uredospore formation","synonyms":[{"name":"negative regulation of ureidospore formation","type":"exact"}],"termid":"GO:0075254"}


id: PBO:0036122
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_cytoplasmic_microtubule_nucleation_from_spindle_pole_body_during_mitotic_interphase","termid":"PBO:0036122"}


id: PBO:0046863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fumarylacetoacetate hydrolase domain containing 2A","termid":"PBO:0046863"}


id: PBO:0089615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"post-Golgi vesicle-mediated transport protein Avl9","termid":"PBO:0089615"}


id: PBO:0057604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 941-1","termid":"PBO:0057604"}


id: PBO:0068248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 28S ribosomal 5","termid":"PBO:0068248"}


id: PBO:0055209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2634","termid":"PBO:0055209"}


id: PBO:0025453
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast cancer","termid":"PBO:0025453"}


id: GO:0031900
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The outer, i.e. cytoplasm-facing, lipid bilayer of the chromoplast envelope.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid outer membrane","termid":"GO:0009527"},{"relation_name":"is_a","term_name":"chromoplast membrane","termid":"GO:0046862"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"chromoplast outer membrane","termid":"GO:0031900"}


id: GO:0097697
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-carboxymethoxyuridine34 in tRNA + S-adenosyl-L-methionine = 5-methoxycarbonylmethoxyuridine34 in tRNA + S-adenosyl-L-homocysteine.","definition_xrefs":["PMID:26681692","RHEA:54080"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA (uridine) methyltransferase activity","termid":"GO:0016300"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016741","GO:0016740","GO:0003824","GO:0140098","GO:0140101"],"is_obsolete":false,"name":"tRNA (5-carboxymethoxyuridine(34)-5-O)-methyltransferase activity","synonyms":[{"name":"tRNA 5-carboxymethoxyuridine methyltransferase activity","type":"related"}],"termid":"GO:0097697"}


id: PBO:0065161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prion like protein doppel","termid":"PBO:0065161"}


id: RO:HOM0000065
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Similarity that is characterized by interchangeability in function.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_similarity_relationship_with","termid":"RO:HOM0000000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_functional_equivalence_relationship_with","synonyms":[{"name":"functional similarity","type":"related"}],"termid":"RO:HOM0000065"}


id: PBO:0083418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the ribosomal gene RPL7B","termid":"PBO:0083418"}


id: GO:0018040
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a C-terminal peptidyl-glutamic acid amide by hydrolysis and oxidation of an interior Glu-Gly peptide in a secreted protein.","definition_xrefs":["RESID:AA0087"],"gene_count":0,"genotype_count":0,"name":"obsolete C-terminal peptidyl-glutamic acid amidation (obsolete GO:0018040)","termid":"GO:0018040"}


id: PR:Q9C105
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone deacetylase complex subunit SAP130 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chitinase-like protein PB1E7.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB1E7.04c","secondary_identifiers":["UniProtKB:Q9C105"],"synonyms":[{"name":"Spom972h-SAP130","type":"exact"}],"termid":"PR:Q9C105"}


id: GO:0033129
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the addition of one or more phosphate groups to a histone protein.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of histone phosphorylation (obsolete GO:0033129)","termid":"GO:0033129"}


id: PBO:0063210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PCBP3 antisense RNA 1","termid":"PBO:0063210"}


id: PR:O13757
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC17A2.07c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13757"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic chromosome segregation protein C17A2.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A2.07c","synonyms":[{"name":"Spom972h-SPAC17A2.07c","type":"exact"}],"termid":"PR:O13757"}


id: PBO:0083544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps TRP1/YDR007W on opposite strand","termid":"PBO:0083544"}


id: PBO:0059568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallothionein 1L, pseudogene","termid":"PBO:0059568"}


id: GO:0018135
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-cysteine cyclase activity (obsolete GO:0018135)","secondary_identifiers":["EC:4.2.1.-"],"synonyms":[{"name":"peptidyl-cysteine cyclase activity","type":"exact"}],"termid":"GO:0018135"}


id: PBO:0080138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VASH1 antisense RNA 1","termid":"PBO:0080138"}


id: GO:0140593
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The apoplast region surrounding a host plant cell. Plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:28082413"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host apoplast","synonyms":[{"name":"host cell apoplast","type":"exact"}],"termid":"GO:0140593"}


id: PBO:0080472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vesicle transport through interaction with t-SNAREs 1B pseudogene 3","termid":"PBO:0080472"}


id: GO:0043772
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acyl phosphate + sn-glycerol 3-phosphate = 1-acyl-sn-glycerol 3-phosphate + orthophosphate.","definition_xrefs":["PMID:17308305"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"acyl-phosphate glycerol-3-phosphate acyltransferase activity","synonyms":[{"name":"acyl-phosphate:glycerol-3-phosphate acyltransferase activity","type":"exact"},{"name":"acylphosphate glycerol-3-phosphate acyltransferase activity","type":"exact"},{"name":"acylphosphate:glycerol-3-phosphate acyltransferase activity","type":"exact"}],"termid":"GO:0043772"}


id: PATO:0000518
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000518 chemical sensitivity value (obsolete PATO:0000518)","termid":"PATO:0000518"}


id: PBO:0087566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of succinate dehydrogenase and of TIM22 translocase; functions as cytochrome b subunit of succinate dehydrogenase, which couples oxidation of succinate to transfer of electrons to ubiquinone as part of the TCA cycle and the mitochondrial respiratory chain; also required for mitochondrial inner membrane protein import as part of the TIM22 complex; SDH3 has a paralog, SHH3, that arose from the whole genome duplication","termid":"PBO:0087566"}


id: FYPO:0007931
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to egtazic acid. Cells stop growing (and may die) at a concentration of egtazic acid that allows wild type cells to grow.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0005447","FYPO:0000139","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to egtazic acid","termid":"FYPO:0007931"}


id: PBO:0017581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"t-UTP complex subunit Utp8 (predicted)","termid":"PBO:0017581"}


id: GO:0016742
data:
  {"annotated_genes":["SJAG_03914","SJAG_02901","SJAG_01814","SJAG_04681","SJAG_01766","SJAG_01368","SJAG_05200","SJAG_03641"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94842],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003864"},{"annotations":[109131,92514],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004047"},{"annotations":[87406,90593],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004372"},{"annotations":[87106],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004479"},{"annotations":[115042],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004643"},{"annotations":[113436],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004644"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a hydroxymethyl- or formyl group from one compound (donor) to another (acceptor).","definition_xrefs":["EC:2.1.2.-","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring one-carbon groups","termid":"GO:0016741"}],"gene_count":8,"genes_by_uniquename":{"SJAG_01368":null,"SJAG_01766":null,"SJAG_01814":null,"SJAG_02901":null,"SJAG_03641":null,"SJAG_03914":null,"SJAG_04681":null,"SJAG_05200":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003674","GO:0016741","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"hydroxymethyl-, formyl- and related transferase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0016742","terms_by_termid":{"GO:0003864":null,"GO:0004047":null,"GO:0004372":null,"GO:0004479":null,"GO:0004643":null,"GO:0004644":null}}


id: FYPO:0001374
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the medial cortex of a spore is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to medial cortex","termid":"FYPO:0001371"},{"relation_name":"is_a","term_name":"abnormal protein localization to medial cortex in spores","termid":"FYPO:0001372"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to medial cortex in spores","synonyms":[{"name":"protein localisation to medial cortex abolished in spores","type":"exact"},{"name":"protein localization to medial cortex abolished in spores","type":"exact"},{"name":"protein localization to medial ring abolished in spores","type":"exact"}],"termid":"FYPO:0001374"}


id: GO:0006430
data:
  {"annotated_genes":["SJAG_00488","SJAG_04409"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101453,111760],"is_not":false,"summary":null,"term":"GO:0006430"}]},"cv_name":"biological_process","definition":"The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. The lysyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a lysine-accetping tRNA.","definition_xrefs":["ISBN:0716730510","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA aminoacylation for protein translation","termid":"GO:0006418"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00488":null,"SJAG_04409":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0006399","GO:0006520"],"is_obsolete":false,"name":"lysyl-tRNA aminoacylation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0006430","terms_by_termid":{"GO:0006430":null}}


id: PBO:0038307
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA_degradation","termid":"PBO:0038307"}


id: PBO:0065521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pentatricopeptide repeat domain 2 pseudogene 1","termid":"PBO:0065521"}


id: GO:2000882
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of starch catabolic process.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of catabolic process","termid":"GO:0009895"},{"relation_name":"is_a","term_name":"regulation of starch catabolic process","termid":"GO:2000881"},{"relation_name":"is_a","term_name":"negative regulation of starch metabolic process","termid":"GO:2000905"},{"relation_name":"negatively_regulates","term_name":"starch catabolic process","termid":"GO:0005983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"negative regulation of starch catabolic process","synonyms":[{"name":"negative regulation of starch breakdown","type":"exact"},{"name":"negative regulation of starch catabolism","type":"exact"},{"name":"negative regulation of starch degradation","type":"exact"}],"termid":"GO:2000882"}


id: GO:0072580
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of a lysine residue in a protein to produce (2S)-2-amino-6-([(3S)-3,6-diaminohexanoyl]amino)hexanoic acid, and the subsequent hydroxylation of the modified lysine residue. This modification is observed in, and is probably unique to, the prokaryotic translation elongation factor P (EF-P).","definition_xrefs":["RESID:AA0531","GOC:imk","GOC:curators","GOC:mah","PMID:22706199","PMID:20729861","RESID:AA0530"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-lysine modification","termid":"GO:0018205"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bacterial-type EF-P lysine modification","synonyms":[{"name":"EF-P modification pathway","type":"exact"}],"termid":"GO:0072580"}


id: PBO:0087316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Small subunit of the heterodimeric cap binding complex with Sto1p; interacts with Npl3p, possibly to package mRNA for export from the nucleus; may have a role in telomere maintenance; contains an RNA-binding motif","termid":"PBO:0087316"}


id: GO:0016474
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A sodium ion-transporting two-sector ATPase complex that couples ATP hydrolysis to the transport of sodium ions across a concentration gradient. The complex comprises a membrane sector (V0) that carries out proton transport and a cytoplasmic compartment sector (V1) that catalyzes ATP hydrolysis.","definition_xrefs":["GOC:mah","PMID:15802565"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sodium ion-transporting two-sector ATPase complex","termid":"GO:0016472"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"sodium ion-transporting V-type ATPase complex","synonyms":[{"name":"sodium-translocating V-type ATPase complex","type":"exact"}],"termid":"GO:0016474"}


id: PBO:0044118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTAGE family member 3, pseudogene","termid":"PBO:0044118"}


id: PBO:0045105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deleted in malignant brain tumors 1 like 1 (pseudogene)","termid":"PBO:0045105"}


id: PBO:0061063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium/potassium transporting ATPase interacting 2","termid":"PBO:0061063"}


id: PBO:0078270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Cys (anticodon GCA) 6-1","termid":"PBO:0078270"}


id: GO:0033487
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of pelargonidin 3-O-glucoside, a basic anthocyanin responsible for red to magenta coloration of flowers and fruits.","definition_xrefs":["MetaCyc:PWY-5125","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flavonoid biosynthetic process","termid":"GO:0009813"},{"relation_name":"is_a","term_name":"beta-glucoside biosynthetic process","termid":"GO:1901806"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pelargonidin 3-O-glucoside biosynthetic process","synonyms":[{"name":"pelargonidin 3-O-glucoside anabolism","type":"exact"},{"name":"pelargonidin 3-O-glucoside biosynthesis","type":"exact"},{"name":"pelargonidin 3-O-glucoside formation","type":"exact"},{"name":"pelargonidin 3-O-glucoside synthesis","type":"exact"}],"termid":"GO:0033487"}


id: PATO:0002273
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Multicolored quality inhering in a bearer by virtue of the bearer's being colored with a variegated pattern resembling marble,.","direct_ancestors":[{"relation_name":"is_a","term_name":"multi-colored","termid":"PATO:0001533"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"marbled","termid":"PATO:0002273"}


id: GO:0015856
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of cytosine, 4-amino-2-hydroxypyrimidine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleobase transport","termid":"GO:0015855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"cytosine transport","synonyms":[{"name":"cytosine transmembrane transport","type":"exact"}],"termid":"GO:0015856"}


id: PBO:0075459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPATA8 antisense RNA 1 (head to head)","termid":"PBO:0075459"}


id: GO:0045317
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation and development of the equator that forms the boundary between the photoreceptors in the dorsal sector of the eye and those in the ventral sector, dividing the eye into dorsal and ventral halves.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formation of anatomical boundary","termid":"GO:0048859"},{"relation_name":"part_of","term_name":"establishment of ommatidial planar polarity","termid":"GO:0042067"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007163"}],"interesting_parent_ids":["GO:0008150","GO:0007163"],"is_obsolete":false,"name":"equator specification","termid":"GO:0045317"}


id: PBO:0079534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 snRNP associated SURP domain containing","termid":"PBO:0079534"}


id: PBO:0108542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A)site selection protein Seb1","termid":"PBO:0108542"}


id: PBO:0004896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJ/TPR domain protein DNAJC7 family","termid":"PBO:0004896"}


id: PBO:0076373
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TGF-beta activated kinase 1 (MAP3K7) binding protein 1","termid":"PBO:0076373"}


id: PBO:0075078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 128","termid":"PBO:0075078"}


id: PR:Q9Y7L6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An AP-2 complex subunit sigma that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11753:SF6","OMA:SCHPO03413","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AP-2 complex subunit sigma (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC685.04c","secondary_identifiers":["UniProtKB:Q9Y7L6"],"synonyms":[{"name":"Spom972h-AP2S1","type":"exact"},{"name":"adaptin small chain (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"clathrin assembly protein 2 sigma small chain (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"sigma2-adaptin (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9Y7L6"}


id: PBO:0086671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by fungal homology comparisons and RT-PCR; identified in a screen for mutants with decreased levels of rDNA transcription","termid":"PBO:0086671"}


id: GO:0048650
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which individuals, having the potential to develop any of several distinct developmental paths, have their individual developmental fate determined in response to environmental cues. Individuals with distinct developmental fates perform different functions in a colony of social insects.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"caste determination","termid":"GO:0048648"},{"relation_name":"is_a","term_name":"polyphenic determination, influence by environmental factors","termid":"GO:0048651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"caste determination, influence by environmental factors","termid":"GO:0048650"}


id: GO:1903277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of sodium ion export across the plasma membrane.","definition_xrefs":["GOC:BHF","PMID:17095720","GOC:rl","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of sodium ion transmembrane transport","termid":"GO:1902306"},{"relation_name":"is_a","term_name":"regulation of sodium ion export across plasma membrane","termid":"GO:1903276"},{"relation_name":"negatively_regulates","term_name":"sodium ion export across plasma membrane","termid":"GO:0036376"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"negative regulation of sodium ion export across plasma membrane","secondary_identifiers":["GO:1903274"],"synonyms":[{"name":"down regulation of sodium export","type":"related"},{"name":"down regulation of sodium ion export","type":"related"},{"name":"down regulation of sodium ion export from cell","type":"exact"},{"name":"down-regulation of sodium export","type":"related"},{"name":"down-regulation of sodium ion export","type":"related"},{"name":"down-regulation of sodium ion export from cell","type":"exact"},{"name":"downregulation of sodium export","type":"related"},{"name":"downregulation of sodium ion export","type":"related"},{"name":"downregulation of sodium ion export from cell","type":"exact"},{"name":"inhibition of sodium export","type":"narrow"},{"name":"inhibition of sodium ion export","type":"narrow"},{"name":"inhibition of sodium ion export from cell","type":"narrow"},{"name":"negative regulation of sodium export","type":"related"},{"name":"negative regulation of sodium ion export","type":"related"},{"name":"negative regulation of sodium ion export from cell","type":"exact"}],"termid":"GO:1903277"}


id: PBO:0082890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cyclin-dependent kinase-activating kinase; required for passage through the cell cycle; phosphorylates and activates Cdc28p; nucleotide-binding pocket differs significantly from those of most other protein kinases; required for premeiotic DNA synthesis, expression of early and middle sporulation specific genes and direct phosphorylation of the Smk1p MAPK to regulate spore morphogenesis","termid":"PBO:0082890"}


id: PBO:0065877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB28, member RAS oncogene family pseudogene 5","termid":"PBO:0065877"}


id: PBO:0087564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of structure-specific Mms4p-Mus81p endonuclease; cleaves branched DNA; involved in DNA repair, replication fork stability, and joint molecule formation/resolution during meiotic recombination; promotes template switching during break-induced replication (BIR), causing non-reciprocal translocations (NRTs); helix-hairpin-helix protein; phosphorylation of non-catalytic subunit Mms4p by Cdc28p and Cdcp during mitotic cell cycle activates function of Mms4p-Mus81p","termid":"PBO:0087564"}


id: PBO:0111953
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TfdA family","termid":"PBO:0111953"}


id: PBO:0003921
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulates mfm1","termid":"PBO:0003921"}


id: SO:0000684
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of nucleotide sequence targeted by a nuclease enzyme.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclease_binding_site","termid":"SO:0000059"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclease_sensitive_site","synonyms":[{"name":"nuclease sensitive site","type":"exact"}],"termid":"SO:0000684"}


id: PBO:0062158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily H member 6 pseudogene","termid":"PBO:0062158"}


id: PBO:0109642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 66 member 1 like (pseudogene)","termid":"PBO:0109642"}


id: GO:0000332
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Provision of the template used by reverse transcriptase to synthesize the G-rich strand of telomeric DNA.","definition_xrefs":["PMID:7958872","PMID:11812242"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA template activity","termid":"GO:0000497"},{"relation_name":"part_of","term_name":"telomerase activity","termid":"GO:0003720"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"part_of","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"part_of","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"part_of","termid":"GO:0003824"},{"rel_name":"part_of","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0003674","GO:0016779","GO:0016740","GO:0005488","GO:0003824","GO:0003677","GO:0140097"],"is_obsolete":false,"name":"template for synthesis of G-rich strand of telomere DNA activity","synonyms":[{"name":"telomerase RNA","type":"exact"},{"name":"telomerase, template","type":"exact"}],"termid":"GO:0000332"}


id: PBO:0090663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human mmtag2 ortholog, implicated in splicing","termid":"PBO:0090663"}


id: PBO:0085154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleosome-binding component of the SWR1 complex; SWR1 exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; required for vacuolar protein sorting","termid":"PBO:0085154"}


id: FYPO:0006663
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the nucleus is longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enlarged nucleus","termid":"FYPO:0002255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002403"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0002403"],"is_obsolete":false,"name":"elongated nucleus","synonyms":[{"name":"elongated nuclei","type":"exact"},{"name":"long nucleus","type":"exact"}],"termid":"FYPO:0006663"}


id: GO:0043260
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A laminin complex composed of alpha5, beta2 and gamma1 polypeptide chains.","definition_xrefs":["PMID:10842354","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laminin complex","termid":"GO:0043256"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"laminin-11 complex","synonyms":[{"name":"laminin-521 complex","type":"exact"}],"termid":"GO:0043260"}


id: GO:1900842
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of helvolic acid biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of steroid biosynthetic process","termid":"GO:0010893"},{"relation_name":"is_a","term_name":"positive regulation of cellular biosynthetic process","termid":"GO:0031328"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"positive regulation of secondary metabolite biosynthetic process","termid":"GO:1900378"},{"relation_name":"is_a","term_name":"regulation of helvolic acid biosynthetic process","termid":"GO:1900840"},{"relation_name":"positively_regulates","term_name":"helvolic acid biosynthetic process","termid":"GO:1900812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"positively_regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"positive regulation of helvolic acid biosynthetic process","synonyms":[{"name":"up regulation of helvolic acid biosynthetic process","type":"exact"},{"name":"up-regulation of helvolic acid biosynthetic process","type":"exact"},{"name":"upregulation of helvolic acid biosynthetic process","type":"exact"}],"termid":"GO:1900842"}


id: FYPO:0002648
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal during prometaphase of mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein phosphorylation during vegetative growth","termid":"FYPO:0001038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0001320","FYPO:0001985","FYPO:0002494","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"increased protein phosphorylation during mitotic prometaphase","synonyms":[{"name":"increased protein phosphorylation during mitotic prometaphase during vegetative growth","type":"exact"},{"name":"increased protein phosphorylation during prometaphase of mitosis","type":"exact"}],"termid":"FYPO:0002648"}


id: SO:1000087
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence_variation that causes an increase in the level of mature, spliced and processed RNA, resulting from a change in the corresponding DNA sequence.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000087 sequence_variation_increasing_level_of_transcript (obsolete SO:1000087)","synonyms":[{"name":"mutation increasing level of transcript","type":"exact"},{"name":"sequence variation increasing level of transcript","type":"exact"}],"termid":"SO:1000087"}


id: PBO:0002216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-coding RNA, centromeric (predicted)","termid":"PBO:0002216"}


id: PBO:0029027
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_mitotic_spindle","termid":"PBO:0029027"}


id: GO:0061550
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a cranial ganglion over time, from its formation to the mature structure.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ganglion development","termid":"GO:0061548"},{"relation_name":"part_of","term_name":"cranial nerve development","termid":"GO:0021545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cranial ganglion development","synonyms":[{"name":"cranial ganglia development","type":"related"}],"termid":"GO:0061550"}


id: PBO:0070655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 26","termid":"PBO:0070655"}


id: FYECO:0000007
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"The expression level of the gene was increased compared to expressing it from its endogenous promoter in the genome.","definition_xrefs":["PomBase:al"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE FYECO:0000007 overexpression (obsolete FYECO:0000007)","termid":"FYECO:0000007"}


id: FYPO:0005175
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of catalase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal catalase activity","termid":"FYPO:0001104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000002","FYPO:0000652","FYPO:0000707","FYPO:0001985","FYPO:0005447","FYPO:0000661"],"is_obsolete":false,"name":"increased catalase activity","termid":"FYPO:0005175"}


id: GO:0060504
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate or frequency of epithelial cell proliferation that results in the lung bud increasing in size radially.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental growth","termid":"GO:0048639"},{"relation_name":"is_a","term_name":"positive regulation of epithelial cell proliferation involved in lung morphogenesis","termid":"GO:0060501"},{"relation_name":"is_a","term_name":"positive regulation of branching involved in lung morphogenesis","termid":"GO:0061047"},{"relation_name":"positively_regulates","term_name":"epithelial cell proliferation involved in lung bud dilation","termid":"GO:0060505"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of epithelial cell proliferation involved in lung bud dilation","termid":"GO:0060504"}


id: GO:0044488
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism effects a change in the frequency, rate or extent of the activity of a voltage-gated sodium channel in another organism.","definition_xrefs":["PMID:21781281","GOC:fj","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of ion channel activity in another organism","termid":"GO:0044561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation of voltage-gated sodium channel activity in another organism","synonyms":[{"name":"modulation of voltage-gated sodium channel activity in other organism","type":"exact"}],"termid":"GO:0044488"}


id: GO:0019578
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of aldaric acid, any dicarboxylic acid formed by oxidation of by the terminal groups of an aldose to carboxyl group.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldaric acid metabolic process","termid":"GO:0019577"},{"relation_name":"is_a","term_name":"dicarboxylic acid biosynthetic process","termid":"GO:0043650"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"aldaric acid biosynthetic process","synonyms":[{"name":"aldaric acid anabolism","type":"exact"},{"name":"aldaric acid biosynthesis","type":"exact"},{"name":"aldaric acid formation","type":"exact"},{"name":"aldaric acid synthesis","type":"exact"}],"termid":"GO:0019578"}


id: PBO:0065533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre T cell antigen receptor alpha","termid":"PBO:0065533"}


id: PBO:0084623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Methionine-S-sulfoxide reductase; involved in the response to oxidative stress; protects iron-sulfur clusters from oxidative inactivation along with MXR2; involved in the regulation of lifespan; reduced activity of human homolog implicated in Alzheimer disease","termid":"PBO:0084623"}


id: GO:0090690
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A receptor complex that consists of two or more different receptor complexes that individually undergo combination with a hormone, neurotransmitter, drug or intracellular messenger. The formation of the higher level complex initiates a change in cell function.","definition_xrefs":["GOC:pad","PMID:24157794","PMID:22035699","GOC:PARL"],"gene_count":0,"genotype_count":0,"name":"obsolete heteroreceptor complex (obsolete GO:0090690)","termid":"GO:0090690"}


id: PBO:0048316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 27","termid":"PBO:0048316"}


id: PBO:0054070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1418","termid":"PBO:0054070"}


id: GO:1900199
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of directed movement of proteins from the nucleus into the cytoplasm, during anaphase occurring as part of meiosis II.","definition_xrefs":["GOC:TermGenie","PMID:20970342","GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein export from nucleus","termid":"GO:0046827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006913"},{"rel_name":"regulates","termid":"GO:0006913"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0006913"],"is_obsolete":false,"name":"positive regulation of protein export from nucleus during meiotic anaphase II","synonyms":[{"name":"positive regulation of protein export from nucleus involved in meiotic anaphase II","type":"broad"}],"termid":"GO:1900199"}


id: GO:1901749
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of leukotriene D4.","definition_xrefs":["GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukotriene catabolic process","termid":"GO:0036100"},{"relation_name":"is_a","term_name":"sulfur compound catabolic process","termid":"GO:0044273"},{"relation_name":"is_a","term_name":"icosanoid catabolic process","termid":"GO:1901523"},{"relation_name":"is_a","term_name":"organonitrogen compound catabolic process","termid":"GO:1901565"},{"relation_name":"is_a","term_name":"leukotriene D4 metabolic process","termid":"GO:1901748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0044248","GO:0006790","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"leukotriene D4 catabolic process","synonyms":[{"name":"leukotriene D4 breakdown","type":"exact"},{"name":"leukotriene D4 catabolism","type":"exact"},{"name":"leukotriene D4 degradation","type":"exact"}],"termid":"GO:1901749"}


id: GO:0051126
data:
  {"annotated_genes":["SJAG_03455"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86985],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034316"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of actin nucleation, the initial step in the formation of an actin filament in which actin monomers combine to form a new filament.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of actin nucleation","termid":"GO:0051125"},{"relation_name":"is_a","term_name":"negative regulation of cytoskeleton organization","termid":"GO:0051494"},{"relation_name":"is_a","term_name":"negative regulation of supramolecular fiber organization","termid":"GO:1902904"},{"relation_name":"negatively_regulates","term_name":"actin nucleation","termid":"GO:0045010"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03455":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0030036"},{"rel_name":"negatively_regulates","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0030036","GO:0007010"],"is_obsolete":false,"name":"negative regulation of actin nucleation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of actin nucleation","type":"exact"},{"name":"down-regulation of actin nucleation","type":"exact"},{"name":"downregulation of actin nucleation","type":"exact"},{"name":"inhibition of actin nucleation","type":"narrow"}],"termid":"GO:0051126","terms_by_termid":{"GO:0034316":null}}


id: PBO:0027363
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_telomere-nuclear_envelope_distance_during_mitosis","termid":"PBO:0027363"}


id: PBO:0040360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase membrane subunit j","termid":"PBO:0040360"}


id: GO:0051665
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which membrane rafts are transported to, or maintained in, a specific location. Membrane rafts are small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes.","definition_xrefs":["GOC:ai","PMID:16645198"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization within membrane","termid":"GO:0051668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"membrane raft localization","synonyms":[{"name":"establishment and maintenance of membrane raft localization","type":"exact"},{"name":"lipid raft localization","type":"exact"},{"name":"membrane raft localisation","type":"exact"}],"termid":"GO:0051665"}


id: GO:0060506
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of activation of the transmembrane Smoothened-type protein. This process contributes to lung development.","definition_xrefs":["GOC:dph","GOC:mtg_lung"],"direct_ancestors":[{"relation_name":"is_a","term_name":"smoothened signaling pathway","termid":"GO:0007224"},{"relation_name":"part_of","term_name":"cell-cell signaling involved in lung development","termid":"GO:0060495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"smoothened signaling pathway involved in lung development","synonyms":[{"name":"hedgehog signaling pathway involved in lung development","type":"exact"},{"name":"hh signaling pathway involved in lung development","type":"exact"},{"name":"smoothened signalling pathway involved in lung development","type":"exact"}],"termid":"GO:0060506"}


id: GO:1904244
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of pancreatic trypsinogen secretion.","definition_xrefs":["PMID:12771515","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein secretion","termid":"GO:0050714"},{"relation_name":"is_a","term_name":"regulation of pancreatic trypsinogen secretion","termid":"GO:1904242"},{"relation_name":"positively_regulates","term_name":"pancreatic trypsinogen secretion","termid":"GO:1990747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of pancreatic trypsinogen secretion","synonyms":[{"name":"activation of pancreatic trypsinogen release","type":"narrow"},{"name":"activation of pancreatic trypsinogen secretion","type":"narrow"},{"name":"positive regulation of pancreatic trypsinogen release","type":"exact"},{"name":"up regulation of pancreatic trypsinogen release","type":"exact"},{"name":"up regulation of pancreatic trypsinogen secretion","type":"exact"},{"name":"up-regulation of pancreatic trypsinogen release","type":"exact"},{"name":"up-regulation of pancreatic trypsinogen secretion","type":"exact"},{"name":"upregulation of pancreatic trypsinogen release","type":"exact"},{"name":"upregulation of pancreatic trypsinogen secretion","type":"exact"}],"termid":"GO:1904244"}


id: PBO:0088257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylyl-sulfate kinase","termid":"PBO:0088257"}


id: GO:1904990
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of adenylate cyclase-inhibiting dopamine receptor signaling pathway.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:kmv","PMID:26554819"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of dopamine receptor signaling pathway","termid":"GO:0060159"},{"relation_name":"regulates","term_name":"adenylate cyclase-inhibiting dopamine receptor signaling pathway","termid":"GO:0007195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway","synonyms":[{"name":"regulation of dopamine receptor, adenylate cyclase inhibiting pathway","type":"exact"},{"name":"regulation of dopamine receptor, adenylyl cyclase inhibiting pathway","type":"exact"},{"name":"regulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway","type":"related"},{"name":"regulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway","type":"exact"}],"termid":"GO:1904990"}


id: GO:0071124
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha1-beta1 integrin complex bound to tyrosine-protein phosphatase non-receptor type 2.","definition_xrefs":["PMID:15592458"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"alpha1-beta1 integrin-tyrosine-protein phosphatase non-receptor type 2 complex","synonyms":[{"name":"ITGA1-ITGB1-PTPN2 complex","type":"narrow"}],"termid":"GO:0071124"}


id: GO:0032660
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of any member of the interleukin-17 family of cytokines.","definition_xrefs":["GOC:mah","GOC:add","PMID:16482511"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"interleukin-17 production","termid":"GO:0032620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of interleukin-17 production","secondary_identifiers":["GO:0045378","GO:1905076"],"synonyms":[{"name":"regulation of CTLA-8 production","type":"exact"},{"name":"regulation of Cytotoxic T-lymphocyte-associated antigen 8 secretion","type":"exact"},{"name":"regulation of IL-17 production","type":"exact"},{"name":"regulation of interleukin-17 biosynthetic process","type":"narrow"},{"name":"regulation of interleukin-17 secretion","type":"narrow"}],"termid":"GO:0032660"}


id: PBO:0062838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligosaccharyltransferase complex subunit pseudogene 4","termid":"PBO:0062838"}


id: PBO:0073545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3TC2 divergent transcript","termid":"PBO:0073545"}


id: GO:0035635
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a bacterium enters a host cell. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:bf","PMID:21187937"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont entry into host","termid":"GO:0044409"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"entry of bacterium into host cell","synonyms":[{"name":"bacterial entry into host cell","type":"exact"},{"name":"invasion of bacteria into host cell","type":"exact"}],"termid":"GO:0035635"}


id: PBO:0028422
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_cycle_arrest_in_mitotic_G2_phase","termid":"PBO:0028422"}


id: PBO:0039014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AFG3 like matrix AAA peptidase subunit 2","termid":"PBO:0039014"}


id: GO:0047615
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: actinomycin + H2O = actinomycinic monolactone.","definition_xrefs":["MetaCyc:ACTINOMYCIN-LACTONASE-RXN","EC:3.1.1.39"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016788","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"actinomycin lactonase activity","synonyms":[{"name":"actinomycin lactonohydrolase activity","type":"related"}],"termid":"GO:0047615"}


id: PBO:0041260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 1 open reading frame 230","termid":"PBO:0041260"}


id: SOFP:encoded_symbol
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","definition":"dicistronic CDS/proteins are attached to a single gene feature representing the whole cassette - in which case the symbol refers to the cassette. encoded_symbol refers to a gene in the sense of non-overlapping CDS set. cf Adh and Adhr in dmel","direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"encoded_symbol","termid":"SOFP:encoded_symbol"}


id: GO:1903472
data:
  {"annotated_genes":["SJAG_00845"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99805],"is_not":false,"summary":null,"term":"GO:1903472"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of mitotic actomyosin contractile ring contraction.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:mtg_cell_cycle","PMID:1234"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of mitotic cytokinetic process","termid":"GO:1903437"},{"relation_name":"is_a","term_name":"regulation of mitotic actomyosin contractile ring contraction","termid":"GO:1903471"},{"relation_name":"negatively_regulates","term_name":"mitotic actomyosin contractile ring contraction","termid":"GO:1902404"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00845":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0000281"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0000281"}],"interesting_parent_ids":["GO:0000281","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"negative regulation of mitotic actomyosin contractile ring contraction","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle","type":"exact"},{"name":"down regulation of cytokinesis, actomyosin ring contraction involved in mitotic cell cycle","type":"exact"},{"name":"down regulation of mitotic actomyosin contractile ring contraction","type":"exact"},{"name":"down-regulation of contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle","type":"exact"},{"name":"down-regulation of cytokinesis, actomyosin ring contraction involved in mitotic cell cycle","type":"exact"},{"name":"down-regulation of mitotic actomyosin contractile ring contraction","type":"exact"},{"name":"downregulation of contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle","type":"exact"},{"name":"downregulation of cytokinesis, actomyosin ring contraction involved in mitotic cell cycle","type":"exact"},{"name":"downregulation of mitotic actomyosin contractile ring contraction","type":"exact"},{"name":"inhibition of contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle","type":"narrow"},{"name":"inhibition of cytokinesis, actomyosin ring contraction involved in mitotic cell cycle","type":"narrow"},{"name":"inhibition of mitotic actomyosin contractile ring contraction","type":"narrow"},{"name":"negative regulation of contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle","type":"exact"},{"name":"negative regulation of cytokinesis, actomyosin ring contraction involved in mitotic cell cycle","type":"exact"},{"name":"negative regulation of mitotic actomyosin contractile ring constriction","type":"exact"}],"termid":"GO:1903472","terms_by_termid":{"GO:1903472":null}}


id: PBO:0030371
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_RNA_level_during_cellular_response_to_hydrogen_peroxide","termid":"PBO:0030371"}


id: GO:0035339
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A multiprotein complex at least composed of serine palmitoyltransferases and ORM proteins (known as ORMDL proteins in mammals and other higher vertebrates) that plays a key role in sphingolipid homeostasis.","definition_xrefs":["PMID:20182505"],"gene_count":0,"genotype_count":0,"name":"obsolete SPOTS complex (obsolete GO:0035339)","synonyms":[{"name":"serine palmitoyltransferase, Orm1/2, Tsc3 and Sac1 complex","type":"narrow"}],"termid":"GO:0035339"}


id: GO:0002794
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of antimicrobial peptide secretion.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antimicrobial peptide production","termid":"GO:0002784"},{"relation_name":"is_a","term_name":"regulation of peptide secretion","termid":"GO:0002791"},{"relation_name":"regulates","term_name":"antimicrobial peptide secretion","termid":"GO:0002776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0006810"],"is_obsolete":false,"name":"regulation of antimicrobial peptide secretion","termid":"GO:0002794"}


id: GO:0015092
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of ferric iron (Fe(III) or Fe3+) ions from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations.","definition_xrefs":["PMID:1447137","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ferric iron transmembrane transporter activity","termid":"GO:0015091"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"high-affinity ferric iron transmembrane transporter activity","synonyms":[{"name":"high affinity ferric uptake transmembrane transporter activity","type":"related"}],"termid":"GO:0015092"}


id: PBO:0027286
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cut_during_cellular_response_to_UV","termid":"PBO:0027286"}


id: PBO:0075281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin family member 21","termid":"PBO:0075281"}


id: PBO:0005527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dicer","termid":"PBO:0005527"}


id: PBO:0086060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function that associates with ribosomes; null mutant exhibits translation defects, altered polyribosome profiles, and resistance to the translation inhibitor anisomcyin; protein abundance increases in response to DNA replication stress","termid":"PBO:0086060"}


id: SO:0001328
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"N2_N2_dimethylguanosine is a modified guanosine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_guanosine","termid":"SO:0001276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N2_N2_dimethylguanosine","secondary_identifiers":["RNAMOD:033"],"synonyms":[{"name":"N2,N2-dimethylguanosine","type":"exact"},{"name":"m22G","type":"exact"}],"termid":"SO:0001328"}


id: PBO:0077345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 86B","termid":"PBO:0077345"}


id: GO:0045691
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of female gametophyte central cell differentiation.","definition_xrefs":["GOC:mtg_plant","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell differentiation","termid":"GO:0045595"},{"relation_name":"is_a","term_name":"regulation of multicellular organismal development","termid":"GO:2000026"},{"relation_name":"regulates","term_name":"embryo sac central cell differentiation","termid":"GO:0009559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of embryo sac central cell differentiation","synonyms":[{"name":"regulation of female gametophyte central cell differentiation","type":"exact"}],"termid":"GO:0045691"}


id: FYPO:0007697
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the activity of a DNA strand exchange inhibitor is decreased.","definition_xrefs":["PomBase:mah","PMID:33493431"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic activity regulator phenotype","termid":"FYPO:0007690"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652"],"is_obsolete":false,"name":"decreased DNA strand exchange inhibitor activity","synonyms":[{"name":"decreased RecA-family recombinase inhibitor activity","type":"exact"},{"name":"decreased negative regulation of RecA-family recombinase activity","type":"related"},{"name":"reduced DNA strand exchange inhibitor activity","type":"exact"}],"termid":"FYPO:0007697"}


id: PBO:0056877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MHC class I polypeptide-related sequence G (pseudogene)","termid":"PBO:0056877"}


id: GO:0070195
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A receptor complex that consists of two identical subunits and binds growth hormone.","definition_xrefs":["GOC:vk","PMID:11445442","GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor complex","termid":"GO:0043235"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"growth hormone receptor complex","termid":"GO:0070195"}


id: PATO:0002425
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Open to view or not covered by another entity.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exposed","termid":"PATO:0002425"}


id: GO:0098557
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side (leaflet) of the smooth endoplasmic reticulum membrane that faces the cytoplasm.","definition_xrefs":["GOC:dos","GOC:ab"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic side of endoplasmic reticulum membrane","termid":"GO:0098554"},{"relation_name":"part_of","term_name":"smooth endoplasmic reticulum membrane","termid":"GO:0030868"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"part_of","termid":"GO:0005789"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005783","GO:0005789","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"cytoplasmic side of smooth endoplasmic reticulum membrane","termid":"GO:0098557"}


id: PBO:0027727
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_transcription_from_CDRE_promoter_in_response_to_micafungin","termid":"PBO:0027727"}


id: GO:0060033
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process in which an anatomical structure is destroyed as a part of its normal progression.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process","termid":"GO:0032502"},{"relation_name":"part_of","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anatomical structure regression","synonyms":[{"name":"histolysis","type":"related"},{"name":"tissue death","type":"related"}],"termid":"GO:0060033"}


id: GO:1903188
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vitellogenesis.","definition_xrefs":["GOC:mr","GO_REF:0000058","GOC:TermGenie","PMID:19467235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of vitellogenesis","termid":"GO:1903186"},{"relation_name":"positively_regulates","term_name":"vitellogenesis","termid":"GO:0007296"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of vitellogenesis","synonyms":[{"name":"activation of vitellogenesis","type":"narrow"},{"name":"activation of yolk production","type":"narrow"},{"name":"positive regulation of yolk production","type":"exact"},{"name":"up regulation of vitellogenesis","type":"exact"},{"name":"up regulation of yolk production","type":"exact"},{"name":"up-regulation of vitellogenesis","type":"exact"},{"name":"up-regulation of yolk production","type":"exact"},{"name":"upregulation of vitellogenesis","type":"exact"},{"name":"upregulation of yolk production","type":"exact"}],"termid":"GO:1903188"}


id: GO:0150056
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A G protein-coupled receptor complex that serves as a receptor for amylin polypeptide (AMY) and consists of a calcitonin receptor (CTR/CALCR) and a receptor activity-modifying protein (RAMP) 1. Amylin receptor complex 1 (AMY1) also serves as a receptor for the calcitonin related peptide (CGRP) and adrenomedullin (AM/ADM).","definition_xrefs":["PMID:22500019","GOC:bc","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amylin receptor complex","termid":"GO:1903440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"amylin receptor complex 1","synonyms":[{"name":"AMY1 complex","type":"exact"}],"termid":"GO:0150056"}


id: PBO:0042242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine receptor 5","termid":"PBO:0042242"}


id: PBO:0113460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of TFIID, TFIIF, INO80, SWI/SNF, and NuA3 complexes; involved in RNA polymerase II transcription initiation and in chromatin modification; serves as an additional DNA binding domain for the complex; contains a YEATS domain","termid":"PBO:0113460"}


id: PBO:0049687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hepcidin antimicrobial peptide","termid":"PBO:0049687"}


id: PBO:0062601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily K member 2","termid":"PBO:0062601"}


id: GO:0062154
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + H2O + N6-methyl-AMP = IMP + methylamine. Can also use N6-methyl-dAMP as a substrate.","definition_xrefs":["RHEA:16001","PMID:29884623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016810"],"is_obsolete":false,"name":"N6-methyl-AMP deaminase activity","secondary_identifiers":["Reactome:R-HSA-9731661","Reactome:R-HSA-2161195","Reactome:R-HSA-2161187"],"synonyms":[{"name":"MAPDA","type":"exact"},{"name":"N6-mAMP deaminase activity","type":"exact"},{"name":"N6-methyl-AMP/dAMP aminohydrolase","type":"exact"}],"termid":"GO:0062154"}


id: PBO:0081929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 971, pseudogene","termid":"PBO:0081929"}


id: GO:0070734
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by addition of one or more methyl groups to lysine at position 27 of the histone.","definition_xrefs":["GOC:pr","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K27 methylation (obsolete GO:0070734)","synonyms":[{"name":"histone H3 K27 methylation","type":"exact"},{"name":"histone H3K27me","type":"exact"},{"name":"histone lysine H3 K27 methylation","type":"exact"}],"termid":"GO:0070734"}


id: GO:0070505
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A layer of extracellular matrix deposited onto the surface of the pollen wall upon disintegration of the tapetal layer of the anther wall in the late stages of pollen development. The composition of this material is highly heterogeneous and includes waxes, lipid droplets, small aromatic molecules, and proteins. The pollen coat is proposed to have many functions, such as holding pollen in the anther until dispersal, facilitation of pollen dispersal, protection of pollen from water loss and UV radiation, and facilitation of adhesion of pollen to the stigma.","definition_xrefs":["PMID:12930826","GOC:mah","PMID:15012271","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix","termid":"GO:0031012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"pollen coat","synonyms":[{"name":"pollenkitt","type":"exact"},{"name":"tryphine","type":"exact"}],"termid":"GO:0070505"}


id: PBO:0054146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1513","termid":"PBO:0054146"}


id: PBO:0083470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene PRR1","termid":"PBO:0083470"}


id: PBO:0077592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane serine protease 3","termid":"PBO:0077592"}


id: PBO:0025449
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ornithine transcarbamylase deficiency","termid":"PBO:0025449"}


id: GO:0021646
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the vagus nerve. This process pertains to the initial formation of a structure from unspecified parts. This nerve is primarily sensory but also has visceromotor components. It originates in the brain stem and controls many autonomic functions of the heart, lungs, stomach, pharynx, larynx, trachea, esophagus and other gastrointestinal tract components. It controls some motor functions such as speech. The sensory branches mediate sensation from the pharynx, larynx, thorax and abdomen; it also innervates taste buds in the epiglottis.","definition_xrefs":["GOC:dgh","GOC:dph","GOC:jid","ISBN:0838580343","GO_REF:0000021","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve formation","termid":"GO:0021603"},{"relation_name":"part_of","term_name":"vagus nerve morphogenesis","termid":"GO:0021644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vagus nerve formation","synonyms":[{"name":"CN X biosynthesis","type":"related"},{"name":"CN X formation","type":"related"}],"termid":"GO:0021646"}


id: PBO:0077108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocase of inner mitochondrial membrane 13","termid":"PBO:0077108"}


id: GO:0060961
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of phospholipase D.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipase inhibitor activity","termid":"GO:0004859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140678"}],"interesting_parent_ids":["GO:0140678","GO:0098772","GO:0004857","GO:0003674","GO:0030234"],"is_obsolete":false,"name":"phospholipase D inhibitor activity","termid":"GO:0060961"}


id: SO:0001095
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions.","definition_xrefs":["SO:cb","EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_metal_contact","termid":"SO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"polypeptide_cobalt_ion_contact_site","secondary_identifiers":["BS:00136"],"synonyms":[{"name":"Co_contact_site","type":"exact"},{"name":"polypeptide cobalt ion contact site","type":"exact"}],"termid":"SO:0001095"}


id: GO:0035577
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding an azurophil granule, a primary lysosomal granule found in neutrophil granulocytes that contains a wide range of hydrolytic enzymes and is released into the extracellular fluid.","definition_xrefs":["GOC:bf","PMID:17152095"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysosomal membrane","termid":"GO:0005765"},{"relation_name":"is_a","term_name":"secretory granule membrane","termid":"GO:0030667"},{"relation_name":"part_of","term_name":"azurophil granule","termid":"GO:0042582"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005773"}],"interesting_parent_ids":["GO:0031410","GO:0005737","GO:0005773","GO:0005575"],"is_obsolete":false,"name":"azurophil granule membrane","synonyms":[{"name":"primary granule membrane","type":"exact"}],"termid":"GO:0035577"}


id: PBO:0050259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 37","termid":"PBO:0050259"}


id: FYPO:0007440
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the directed movement of sterols within cells is abnormal.","definition_xrefs":["GO:0032366","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transport during vegetative growth","termid":"FYPO:0005973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal intracellular sterol transport","synonyms":[{"name":"abnormal intracellular sterol transport during mitotic cell cycle","type":"related"},{"name":"abnormal intracellular sterol transport during vegetative growth","type":"exact"}],"termid":"FYPO:0007440"}


id: PBO:0031069
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_small_spore","termid":"PBO:0031069"}


id: GO:0048407
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to platelet-derived growth factor.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth factor binding","termid":"GO:0019838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"platelet-derived growth factor binding","synonyms":[{"name":"PDGF binding","type":"exact"}],"termid":"GO:0048407"}


id: PBO:0064115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polycystin 1, transient receptor potential channel interacting pseudogene 2","termid":"PBO:0064115"}


id: PBO:0085916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; member of a flavodoxin-like fold protein family that includes Pst2p and Ycp4p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; RFS1 has a paralog, PST2, that arose from the whole genome duplication","termid":"PBO:0085916"}


id: GO:0042044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of substances that are in liquid form in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport","termid":"GO:0006810"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"fluid transport","termid":"GO:0042044"}


id: PBO:0079587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 D3","termid":"PBO:0079587"}


id: PBO:0068903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 145, pseudogene","termid":"PBO:0068903"}


id: GO:1902395
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of 1-deoxy-D-xylulose-5-phosphate synthase activity.","definition_xrefs":["PMID:23612965","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transferase activity","termid":"GO:0051338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of 1-deoxy-D-xylulose-5-phosphate synthase activity","synonyms":[{"name":"regulation of 1-deoxy-D-xylulose-5-phosphate pyruvate-lyase (carboxylating) activity","type":"exact"},{"name":"regulation of 1-deoxyxylulose-5-phosphate synthase activity","type":"exact"},{"name":"regulation of DOXP synthase activity","type":"exact"},{"name":"regulation of DXP-synthase activity","type":"exact"},{"name":"regulation of pyruvate:D-glyceraldehyde-3-phosphate acetaldehydetransferase (decarboxylating)","type":"exact"}],"termid":"GO:1902395"}


id: GO:0001982
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The lowering of the number of nerve impulses from baroreceptors as a result of decreased stretch of an artery that results in an increased in sympathetic nerve impulses to peripheral blood vessels.","definition_xrefs":["GOC:dph","GOC:mtg_cardio","ISBN:0323031951","ISBN:0721643949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of systemic arterial blood pressure by carotid sinus baroreceptor feedback","termid":"GO:0001978"},{"relation_name":"is_a","term_name":"positive regulation of systemic arterial blood pressure","termid":"GO:0003084"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"baroreceptor response to decreased systemic arterial blood pressure","termid":"GO:0001982"}


id: PBO:0048729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycolipid transfer protein pseudogene 1","termid":"PBO:0048729"}


id: PBO:0067480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 614, pseudogene","termid":"PBO:0067480"}


id: PBO:0030482
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-ferrichrome_absent_from_cell","termid":"PBO:0030482"}


id: PBO:0042255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperonin containing TCP1 subunit 2","termid":"PBO:0042255"}


id: PBO:0047317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAT atypical cadherin 1 pseudogene 1","termid":"PBO:0047317"}


id: GO:0102732
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1L-myo-inositol 1,2,3,4,6-pentakisphosphate(10-) + ATP = H+ + myo-inositol hexakisphosphate(12-) + ADP.","definition_xrefs":["EC:2.7.1.140","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"myo-inositol-1,2,3,4,6-heptakisphosphate 5-kinase activity","secondary_identifiers":["MetaCyc:RXN-7186"],"termid":"GO:0102732"}


id: PBO:0017069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein, DNAJ domain","termid":"PBO:0017069"}


id: PR:Q10086
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- toe4 gene.","definition_xrefs":["UniProtKB:Q10086","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transcriptional regulatory protein C11D3.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11D3.07c","synonyms":[{"name":"Spom972h-toe4","type":"exact"}],"termid":"PR:Q10086"}


id: PBO:0081089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger DHHC-type palmitoyltransferase 19","termid":"PBO:0081089"}


id: PBO:0082415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bifunctional dehydrogenase and ferrochelatase; involved in the biosynthesis of siroheme, a prosthetic group used by sulfite reductase; required for sulfate assimilation and methionine biosynthesis","termid":"PBO:0082415"}


id: GO:0061547
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UMP + (1,4)-alpha-D-glucosyl(n)-glucose-1-phosphate.","definition_xrefs":["GOC:dph","PMID:21356517"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring phosphorus-containing groups","termid":"GO:0016772"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"glycogen synthase activity, transferring glucose-1-phosphate","secondary_identifiers":["Reactome:R-HSA-3780994","Reactome:R-HSA-3781024"],"termid":"GO:0061547"}


id: GO:0052704
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The pathway resulting in the formation of ergothioneine from histidine via a set of steps in which gamma-glutamyl-hercynylcysteine sulfoxide is formed as an intermediate.","definition_xrefs":["PMID:5484456","PMID:4276459"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aromatic amino acid metabolic process","termid":"GO:0009072"},{"relation_name":"is_a","term_name":"ergothioneine biosynthetic process","termid":"GO:0052699"},{"relation_name":"is_a","term_name":"imidazole-containing compound metabolic process","termid":"GO:0052803"},{"relation_name":"is_a","term_name":"alpha-amino acid metabolic process","termid":"GO:1901605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150","GO:0006790"],"is_obsolete":false,"name":"ergothioneine biosynthesis from histidine via gamma-glutamyl-hercynylcysteine sulfoxide","secondary_identifiers":["Wikipedia:Ergothioneine"],"synonyms":[{"name":"ergothioneine biosynthesis from histidine via N-alpha,N-alpha,N-alpha-trimethyl-L-histidine","type":"broad"}],"termid":"GO:0052704"}


id: PBO:0080744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XIAP associated factor 1","termid":"PBO:0080744"}


id: PBO:0055733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LMO7 downstream neighbor","termid":"PBO:0055733"}


id: PBO:0085454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Posttranscriptional regulator of phosphate and glucose metabolism; facilitates PHO4 mRNA degradation by interacting with Pop2p; regulates PHO4 mRNA stability by binding to PHO4's 3'UTR in a phosphate-dependent manner; contains highly conserved YTH (YT521-B Homology) domain that exhibits RNA-binding activity; human homolog YTHDF2 can complement yeast null mutant","termid":"PBO:0085454"}


id: PBO:0044697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDX3 interacting lncRNA 1","termid":"PBO:0044697"}


id: PBO:0073827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 7 member 5 pseudogene 1","termid":"PBO:0073827"}


id: PBO:0065741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PXN antisense RNA 1","termid":"PBO:0065741"}


id: GO:0010981
data:
  {"annotated_genes":["SJAG_04668","SJAG_00610","SJAG_02278","SJAG_04771","SJAG_04462","SJAG_00424","SJAG_04666","SJAG_03705","SJAG_01787"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83651,88516],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140748"},{"annotations":[113977,101426,88518,86883,88501,98949],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090334"},{"annotations":[98951,85560,91043,88522],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070610"}]},"cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of cell wall macromolecule metabolism. Cell wall macromolecule metabolic processes are the chemical reactions and pathways involving macromolecules forming, or destined to form, part of the cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of macromolecule metabolic process","termid":"GO:0060255"},{"relation_name":"regulates","term_name":"cell wall macromolecule metabolic process","termid":"GO:0044036"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00424":null,"SJAG_00610":null,"SJAG_01787":null,"SJAG_02278":null,"SJAG_03705":null,"SJAG_04462":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04771":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell wall macromolecule metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010981","terms_by_termid":{"GO:0070610":null,"GO:0090334":null,"GO:0140748":null}}


id: GO:0071005
data:
  {"annotated_genes":["SJAG_03430"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[101716],"is_not":false,"summary":null,"term":"GO:0071005"}]},"cv_name":"cellular_component","definition":"A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.","definition_xrefs":["PMID:19239890","PMID:18322460","GOC:ab","GOC:krc","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"U2-type spliceosomal complex","termid":"GO:0005684"},{"relation_name":"is_a","term_name":"precatalytic spliceosome","termid":"GO:0071011"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03430":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"U2-type precatalytic spliceosome","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"GT-AG precatalytic spliceosome","type":"narrow"},{"name":"major precatalytic spliceosome","type":"exact"},{"name":"mammalian U2-type spliceosomal complex B","type":"narrow"},{"name":"mammalian U2-type spliceosomal complex B1","type":"narrow"},{"name":"yeast U12-type spliceosomal complex A2-1","type":"related"}],"termid":"GO:0071005","terms_by_termid":{"GO:0071005":null}}


id: PBO:0072835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sin3A associated protein 30","termid":"PBO:0072835"}


id: PBO:0059540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded tRNA-Gly (GGN)","termid":"PBO:0059540"}


id: FYPO:0002895
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription occurs to a greater extent than normal during a cellular response to calcium ions. All genes, or a specific subset of genes, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased transcription during vegetative growth","termid":"FYPO:0000780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0005447","FYPO:0000002","FYPO:0000294","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased transcription during cellular response to calcium ion","synonyms":[{"name":"increased transcription during cellular response to calcium","type":"exact"},{"name":"increased transcription during cellular response to calcium ion during mitotic cell cycle","type":"related"},{"name":"increased transcription during cellular response to calcium ion during vegetative growth","type":"exact"},{"name":"increased transcription in response to calcium","type":"exact"}],"termid":"FYPO:0002895"}


id: PBO:0089841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3, unknown biological role, implicated in protein catabolic process","termid":"PBO:0089841"}


id: GO:0004873
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Receiving an asialoglycoprotein, and delivering the asialoglycoprotein into the cell via endocytosis. An asialoglycoprotein is a plasma glycoproteins from which the terminal sialic acid residue on their complex carbohydrate groups has been removed. The asialoglycoprotein receptor recognizes the terminal galactose and N-acetylgalactosamine units of the asialoglycoprotein, the receptor-ligand complex is internalized and transported to a sorting organelle where disassociation occurs before the receptor is recycled to the cell membrane.","definition_xrefs":["PMID:11278827","Wikipedia:Asialoglycoprotein","PMID:7624395","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cargo receptor activity","termid":"GO:0038024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038024"}],"interesting_parent_ids":["GO:0038024","GO:0003674"],"is_obsolete":false,"name":"asialoglycoprotein receptor activity","termid":"GO:0004873"}


id: PR:Q9P6J7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1683.03c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P6J7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized MFS-type transporter C1683.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1683.03c","synonyms":[{"name":"Spom972h-SPBC1683.03c","type":"exact"}],"termid":"PR:Q9P6J7"}


id: PBO:0084596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Merged open reading frame; does not encode a discrete protein; YJL018W was originally annotated as an independent ORF, but as a result of a sequence change, it was merged with an adjacent ORF into a single reading frame, designated YJL019W","termid":"PBO:0084596"}


id: PBO:0028842
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-heterochromatin_assembly_beyond_boundary_element_IRC1R","termid":"PBO:0028842"}


id: PATO:0001369
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a colony by virtue of the bearer's appearing above the medium surface with terraced edges.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"raised","termid":"PATO:0001369"}


id: GO:0140859
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + medicarpin = 4'-methoxyisoflavan-2',4,7-triol.","definition_xrefs":["RHEA:35811","PMID:7805842"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"pterocarpan synthase activity","secondary_identifiers":["RHEA:35407","EC:4.2.1.139"],"synonyms":[{"name":"2',7-dihydroxy-4'-methoxyisoflavanol dehydratase activity","type":"exact"},{"name":"2'-hydroxyisoflavanol 4,2'-dehydratase activity","type":"exact"},{"name":"7,2'-dihydroxy-4'-methoxyisoflavanol dehydratase activity","type":"exact"},{"name":"medicarpan synthase activity","type":"exact"},{"name":"medicarpin synthase activity","type":"exact"}],"termid":"GO:0140859"}


id: PATO:0000177
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000177 physiological function (obsolete PATO:0000177)","termid":"PATO:0000177"}


id: SO:0000868
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A frameshift caused by inserting one base.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"frameshift","termid":"SO:0000865"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plus_1_frameshift","synonyms":[{"name":"plus 1 frameshift","type":"exact"}],"termid":"SO:0000868"}


id: FYPO:0004848
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein transport is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"},{"relation_name":"is_a","term_name":"normal transport","termid":"FYPO:0001071"},{"relation_name":"is_a","term_name":"normal protein transport","termid":"FYPO:0005747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0000002","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal protein transport during vegetative growth","synonyms":[{"name":"normal protein transport during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004848"}


id: PBO:0049501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A clustered histone 8","termid":"PBO:0049501"}


