# terms

id: PBO:0054606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2011","termid":"PBO:0054606"}


id: PBO:0073725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLAM family member 6 pseudogene 1","termid":"PBO:0073725"}


id: PBO:0039091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alanine--glyoxylate aminotransferase 2","termid":"PBO:0039091"}


id: PBO:0081552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 471","termid":"PBO:0081552"}


id: PBO:0062437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 101 pseudogene","termid":"PBO:0062437"}


id: PBO:0028877
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cell_population_growth_on_maltose_carbon_source","termid":"PBO:0028877"}


id: FYPO:0002318
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of ergosterol measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cellular sterol level","termid":"FYPO:0002327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular ergosterol level","synonyms":[{"name":"increased cellular ergosterol level during mitotic cell cycle","type":"related"},{"name":"increased cellular ergosterol level during vegetative growth","type":"exact"},{"name":"increased ergosterol accumulation","type":"related"}],"termid":"FYPO:0002318"}


id: PBO:0011959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase allele types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial_nucleotide_deletion","termid":"PBO:0011959"}


id: PBO:0084900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial transporter repressible by thiamine; THI74 has a paralog, YML018C, that arose from the whole genome duplication; shows sequence homology to human gene SLC35F3, a thiamine transporter implicated in hypertension","termid":"PBO:0084900"}


id: GO:0048702
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the neurocranium are generated and organized during the embryonic phase. The neurocranium is the portion of the vertebrate skull surrounding the brain.","definition_xrefs":["PMID:16049113","GOC:jid","GOC:dsf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"embryonic cranial skeleton morphogenesis","termid":"GO:0048701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic neurocranium morphogenesis","synonyms":[{"name":"embryonic braincase morphogenesis","type":"exact"},{"name":"embryonic chondrocranium morphogenesis","type":"exact"}],"termid":"GO:0048702"}


id: PBO:0073302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 14 pseudogene 24","termid":"PBO:0073302"}


id: PR:P40233
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cki1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P40233"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"casein kinase I homolog 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1347.06c","synonyms":[{"name":"SPBC1347.06c","type":"related"},{"name":"Spom972h-cki1","type":"exact"}],"termid":"PR:P40233"}


id: GO:0019645
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors other than oxygen to generate a transmembrane electrochemical gradient.","definition_xrefs":["GOC:ai","GOC:mtg_electron_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory electron transport chain","termid":"GO:0022904"},{"relation_name":"part_of","term_name":"anaerobic respiration","termid":"GO:0009061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"anaerobic electron transport chain","termid":"GO:0019645"}


id: GO:0098548
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side (leaflet) of the Golgi membrane that faces the cytoplasm.","definition_xrefs":["GOC:ab","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic side of membrane","termid":"GO:0098562"},{"relation_name":"part_of","term_name":"Golgi membrane","termid":"GO:0000139"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0005794"],"is_obsolete":false,"name":"cytoplasmic side of Golgi membrane","termid":"GO:0098548"}


id: GO:1902848
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of neuronal signal transduction.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:sjp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of neuronal signal transduction","termid":"GO:1902847"},{"relation_name":"negatively_regulates","term_name":"neuronal signal transduction","termid":"GO:0023041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of neuronal signal transduction","synonyms":[{"name":"down regulation of neuronal signal transduction","type":"exact"},{"name":"down-regulation of neuronal signal transduction","type":"exact"},{"name":"downregulation of neuronal signal transduction","type":"exact"},{"name":"inhibition of neuronal signal transduction","type":"narrow"}],"termid":"GO:1902848"}


id: MOD:00187
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes an L-tyrosine residue with L-thyroxine.","definition_xrefs":["ChEBI:18332","PubMed:6704086","RESID:AA0178","Unimod:398"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iodinated tyrosine","termid":"MOD:00998"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-thyroxine","synonyms":[{"name":"(S)-2-amino-3-[4-(4-hydroxy-3,5-diiodophenoxy)-3,5-diiodophenyl]propanoic acid","type":"exact"},{"name":"3',3'',5',5''-tetraiodo-L-thyronine","type":"exact"},{"name":"3,3',5,5'-tetraiodo-L-thyronine","type":"exact"},{"name":"3,5,3',5'-tetraiodo-L-thyronine","type":"exact"},{"name":"4-(4-hydroxy-3,5-diiodophenoxy)-3,5-diiodo-L-phenylalanine","type":"exact"},{"name":"I4Thy","type":"exact"},{"name":"L-thyroxine","type":"exact"},{"name":"MOD_RES Thyroxine","type":"exact"},{"name":"O-(4-hydroxy-3,5-diiodophenyl)-3,5-diiodo-L-tyrosine","type":"exact"},{"name":"T4","type":"exact"},{"name":"Thyroxine","type":"related"},{"name":"tetraiodo","type":"related"}],"termid":"MOD:00187"}


id: PBO:0050438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein L pseudogene 2","termid":"PBO:0050438"}


id: PBO:0030204
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_elongated_multiseptate_vegetative_cell","termid":"PBO:0030204"}


id: PBO:0048255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactose-3-O-sulfotransferase 3","termid":"PBO:0048255"}


id: PBO:0000431
data:
  {"annotation_feature_type":"gene","cv_name":"ex_tools","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selectable marker","termid":"PBO:0000431"}


id: GO:0042454
data:
  {"annotated_genes":["SJAG_01673","SJAG_03771","SJAG_02580","SJAG_02959"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83718,83717],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006154"},{"annotations":[85316,104473],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009972"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoside metabolic process","termid":"GO:0009119"},{"relation_name":"is_a","term_name":"nucleoside catabolic process","termid":"GO:0009164"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01673":null,"SJAG_02580":null,"SJAG_02959":null,"SJAG_03771":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"ribonucleoside catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ribonucleoside breakdown","type":"exact"},{"name":"ribonucleoside catabolism","type":"exact"},{"name":"ribonucleoside degradation","type":"exact"}],"termid":"GO:0042454","terms_by_termid":{"GO:0006154":null,"GO:0009972":null}}


id: FYPO:0004382
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which a single kinetochore becomes attached to both spindle poles, and sister chromatids do not move towards the spindle poles at the same time during mitosis prior to completion of chromosome segregation.","definition_xrefs":["PomBase:mah","PMID:20935472"],"direct_ancestors":[{"relation_name":"has_part","term_name":"lagging mitotic chromosomes","termid":"FYPO:0000228"},{"relation_name":"has_part","term_name":"merotelic kinetochore attachment during mitosis","termid":"FYPO:0004381"},{"relation_name":"is_a","term_name":"abnormal attachment of mitotic spindle microtubules to kinetochore","termid":"FYPO:0004213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"has_part","termid":"FYPO:0000138"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000337","FYPO:0000631","FYPO:0000641","FYPO:0005447","FYPO:0000138","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"meroterically attached lagging mitotic chromosomes","synonyms":[{"name":"abnormal mitotic sister chromatid segregation, with merotelic kinetochore attachment and lagging mitotic chromosomes","type":"exact"},{"name":"lagging mitotic chromosomes with merotelic kinetochore attachment","type":"exact"},{"name":"lagging mitotic sister chromatids, with merotelic kinetochore attachment","type":"exact"},{"name":"merotelic kinetochore attachment with lagging mitotic chromosomes","type":"exact"},{"name":"meroterically attached lagging mitotic chromosomes during mitotic cell cycle","type":"related"},{"name":"meroterically attached lagging mitotic chromosomes during vegetative growth","type":"exact"}],"termid":"FYPO:0004382"}


id: GO:0002544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Inflammation of prolonged duration (weeks or months) in which active inflammation, tissue destruction, and attempts at repair are proceeding simultaneously. Although it may follow acute inflammation, chronic inflammation frequently begins insidiously, as a low-grade, smoldering, often asymptomatic response.","definition_xrefs":["GO_REF:0000022","GOC:jal","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inflammatory response","termid":"GO:0006954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chronic inflammatory response","termid":"GO:0002544"}


id: GO:0071307
data:
  {"annotated_genes":["SJAG_01162"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101304],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036245"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin K stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to vitamin K","termid":"GO:0032571"},{"relation_name":"is_a","term_name":"cellular response to vitamin","termid":"GO:0071295"},{"relation_name":"is_a","term_name":"cellular response to ketone","termid":"GO:1901655"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01162":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to vitamin K","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0071307","terms_by_termid":{"GO:0036245":null}}


id: PBO:0064987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich protein BstNI subfamily 4","termid":"PBO:0064987"}


id: PBO:0084142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"High-affinity glucose transporter; member of the major facilitator superfamily, nearly identical to Hxt7p, expressed at high basal levels relative to other HXTs, repression of expression by high glucose requires SNF3; HXT6 has a paralog, HXT1, that arose from the whole genome duplication","termid":"PBO:0084142"}


id: PATO:0000067
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000067 relative pilosity (obsolete PATO:0000067)","termid":"PATO:0000067"}


id: GO:0098618
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + L-selenomethionine + tRNA(Met) => AMP + diphosphate + selenomethionyl-tRNA(Met).","definition_xrefs":["PMID:16661668","PMID:16661782"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0140101","GO:0003824","GO:0140098","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"selenomethionine-tRNA ligase activity","secondary_identifiers":["Reactome:R-HSA-2408546"],"termid":"GO:0098618"}


id: PBO:0036367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein with a role in clearing protein aggregates (predicted)","termid":"PBO:0036367"}


id: GO:1903501
data:
  {"annotated_genes":["SJAG_00082","SJAG_04597"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86117,90517],"is_not":false,"summary":null,"term":"GO:1903501"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mitotic actomyosin contractile ring assembly.","definition_xrefs":["GOC:vw","GOC:al","GO_REF:0000058","GOC:mtg_cell_cycle","GOC:TermGenie","PMID:18256290"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of mitotic cytokinetic process","termid":"GO:1903438"},{"relation_name":"is_a","term_name":"regulation of mitotic actomyosin contractile ring assembly","termid":"GO:1903499"},{"relation_name":"is_a","term_name":"positive regulation of cytokinesis, actomyosin contractile ring assembly","termid":"GO:2000433"},{"relation_name":"positively_regulates","term_name":"mitotic actomyosin contractile ring assembly","termid":"GO:1903475"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_04597":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0030036"},{"rel_name":"regulates","termid":"GO:0000281"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007010"},{"rel_name":"positively_regulates","termid":"GO:0000281"},{"rel_name":"regulates","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0030036","GO:0044085","GO:0008150","GO:0007010","GO:0007049","GO:0000281"],"is_obsolete":false,"name":"positive regulation of mitotic actomyosin contractile ring assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of actomyosin contractile ring assembly involved in cytokinesis after mitosis","type":"narrow"},{"name":"activation of contractile ring assembly involved in mitotic cytokinesis","type":"narrow"},{"name":"activation of cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis","type":"narrow"},{"name":"activation of mitotic actomyosin contractile ring assembly","type":"narrow"},{"name":"positive regulation of actomyosin contractile ring assembly involved in cytokinesis after mitosis","type":"exact"},{"name":"positive regulation of contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"positive regulation of cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"positive regulation of mitotic cytokinesis, actomyosin contractile ring assembly","type":"exact"},{"name":"up regulation of actomyosin contractile ring assembly involved in cytokinesis after mitosis","type":"exact"},{"name":"up regulation of contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"up regulation of cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"up regulation of mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"up-regulation of actomyosin contractile ring assembly involved in cytokinesis after mitosis","type":"exact"},{"name":"up-regulation of contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"up-regulation of cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"up-regulation of mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"upregulation of actomyosin contractile ring assembly involved in cytokinesis after mitosis","type":"exact"},{"name":"upregulation of contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"upregulation of cytokinesis, actomyosin contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"upregulation of mitotic actomyosin contractile ring assembly","type":"exact"}],"termid":"GO:1903501","terms_by_termid":{"GO:1903501":null}}


id: PBO:0031148
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_beta-glucan_level","termid":"PBO:0031148"}


id: PR:O14264
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- dfg10 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14264"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C7D4.09c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC7D4.09c","synonyms":[{"name":"Spom972h-dfg10","type":"exact"}],"termid":"PR:O14264"}


id: GO:0061956
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The infiltration by sperm of the cumulus oophorus to reach the oocyte. The process involves digestive enzymes from a modified lysosome called the acrosome, situated at the head of the sperm.","definition_xrefs":["PMID:21380641"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal reproductive process","termid":"GO:0048609"},{"relation_name":"part_of","term_name":"single fertilization","termid":"GO:0007338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"penetration of cumulus oophorus","synonyms":[{"name":"penetration of cumulus cells layer","type":"exact"},{"name":"penetration of cumulus mass","type":"exact"}],"termid":"GO:0061956"}


id: GO:0045038
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The import of proteins into the chloroplast thylakoid membranes. Proteins that are destined for the thylakoid lumen require two uptake-targeting sequences: the first targets the protein to the stroma, and the second targets the protein from the stroma to the thylakoid lumen. Four separate thylakoid-import systems deal with the proteins once they are in the stroma.","definition_xrefs":["ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein import","termid":"GO:0017038"},{"relation_name":"is_a","term_name":"protein transmembrane import into intracellular organelle","termid":"GO:0044743"},{"relation_name":"is_a","term_name":"establishment of protein localization to chloroplast","termid":"GO:0072596"},{"relation_name":"is_a","term_name":"establishment of protein localization to membrane","termid":"GO:0090150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein import into chloroplast thylakoid membrane","synonyms":[{"name":"chloroplast thylakoid membrane protein import","type":"exact"},{"name":"protein transport into chloroplast thylakoid membrane","type":"exact"}],"termid":"GO:0045038"}


id: PBO:0078718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon TAA) 3-1","termid":"PBO:0078718"}


id: PBO:0058023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3973","termid":"PBO:0058023"}


id: PBO:0084732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial inner membrane transporter; transports oxaloacetate, sulfate, thiosulfate, and isopropylmalate; member of the mitochondrial carrier family","termid":"PBO:0084732"}


id: PBO:0090182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial TOM complex subunit Tom7","termid":"PBO:0090182"}


id: PR:O74836
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl101 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74836"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L1-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1183.08c","synonyms":[{"name":"L10a (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rpl101","type":"exact"}],"termid":"PR:O74836"}


id: PBO:0070415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II associated protein 1","termid":"PBO:0070415"}


id: GO:0044094
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any constituent part of a host cell's nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. The host is the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host intracellular part","termid":"GO:0033646"},{"relation_name":"part_of","term_name":"host cell nucleus","termid":"GO:0042025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell nuclear part","termid":"GO:0044094"}


id: SO:0000387
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Translational regulation of the stationary phase sigma factor RpoS is mediated by the formation of a double-stranded RNA stem-loop structure in the upstream region of the rpoS messenger RNA, occluding the translation initiation site. Clones carrying rprA (RpoS regulator RNA) increased the translation of RpoS. The rprA gene encodes a 106 nucleotide regulatory RNA. As with DsrA Rfam:RF00014, RprA is predicted to form three stem-loops. Thus, at least two small RNAs, DsrA and RprA, participate in the positive regulation of RpoS translation. Unlike DsrA, RprA does not have an extensive region of complementarity to the RpoS leader, leaving its mechanism of action unclear. RprA is non-essential.","direct_ancestors":[{"relation_name":"is_a","term_name":"small_regulatory_ncRNA","termid":"SO:0000370"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RprA_RNA","secondary_identifiers":["http://en.wikipedia.org/wiki/RprA_RNA"],"synonyms":[{"name":"RprA RNA","type":"exact"}],"termid":"SO:0000387"}


id: PBO:0053013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"late endosomal/lysosomal adaptor, MAPK and MTOR activator 3","termid":"PBO:0053013"}


id: GO:1990070
data:
  {"annotated_genes":["SJAG_04837","SJAG_04021","SJAG_02525","SJAG_04618","SJAG_01415","SJAG_03467","SJAG_02655"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[84795,85465,93421,95206,98628,100972,105918],"is_not":false,"summary":null,"term":"GO:1990070"}]},"cv_name":"cellular_component","definition":"A complex that tethers COPII vesicles at ER-Golgi intermediate compartment. Its role in this part of the vesicular transport may start at the ER exit sites. Binds to a component of the COPII coat. In yeast it includes the following subunits: Bet3 (as homodimer), Bet5, Trs20, Trs23, Trs31, Trs33 which are regarded as the core subunits of all TRAPP complexes in yeast.","definition_xrefs":["PMID:20375281","GOC:bhm","PMID:22669257"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TRAPP complex","termid":"GO:0030008"},{"relation_name":"part_of","term_name":"endoplasmic reticulum-Golgi intermediate compartment","termid":"GO:0005793"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01415":null,"SJAG_02525":null,"SJAG_02655":null,"SJAG_03467":null,"SJAG_04021":null,"SJAG_04618":null,"SJAG_04837":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"TRAPPI protein complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"TRAPP core complex","type":"exact"}],"termid":"GO:1990070","terms_by_termid":{"GO:1990070":null}}


id: PBO:0031719
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_mitochondrial_genome_maintenance","termid":"PBO:0031719"}


id: PBO:0088256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein phosphatase (Cdc14-related) Clp1/Flp1","termid":"PBO:0088256"}


id: MOD:01792
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an N-terminal O4'-phospho-L-tyrosine residue to tyrosine immonium ion.","definition_xrefs":["PubMed:18688235","PubMed:17690871"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"O4'-phospho-L-tyrosine","termid":"MOD:00048"},{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"},{"relation_name":"is_a","term_name":"residue reporter fragment","termid":"MOD:01527"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphotyrosine immonium ion","synonyms":[{"name":"2-(4-phosphonoxyphenyl)ethaniminium","type":"exact"}],"termid":"MOD:01792"}


id: FYPO:0004658
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is inviable, and has two nuclei and more than one septum.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"inviable vegetative cell","termid":"FYPO:0001489"},{"relation_name":"is_a","term_name":"binucleate multiseptate vegetative cell","termid":"FYPO:0001223"},{"relation_name":"is_a","term_name":"inviable vegetative cell","termid":"FYPO:0001489"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000002","FYPO:0005447","FYPO:0000004","FYPO:0001320","FYPO:0000032","FYPO:0001985"],"is_obsolete":false,"name":"inviable binucleate multiseptate vegetative cell","synonyms":[{"name":"inviable binucleate multiseptate cell during vegetative growth","type":"exact"},{"name":"inviable binucleate multiseptate vegetative cell during mitotic cell cycle","type":"related"},{"name":"lethal; binucleate multiseptate vegetative cell","type":"exact"}],"termid":"FYPO:0004658"}


id: GO:1901383
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of chorionic trophoblast cell proliferation.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell population proliferation","termid":"GO:0008285"},{"relation_name":"is_a","term_name":"regulation of chorionic trophoblast cell proliferation","termid":"GO:1901382"},{"relation_name":"negatively_regulates","term_name":"chorionic trophoblast cell proliferation","termid":"GO:0097360"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of chorionic trophoblast cell proliferation","synonyms":[{"name":"down regulation of chorionic trophoblast cell proliferation","type":"exact"},{"name":"down-regulation of chorionic trophoblast cell proliferation","type":"exact"},{"name":"downregulation of chorionic trophoblast cell proliferation","type":"exact"},{"name":"inhibition of chorionic trophoblast cell proliferation","type":"narrow"}],"termid":"GO:1901383"}


id: PBO:0056443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARK2 pseudogene 16","termid":"PBO:0056443"}


id: PBO:0059225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maestro heat like repeat family member 7","termid":"PBO:0059225"}


id: GO:0043245
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The environmental space outside of an organism; this may be a host organism in the case of parasitic and symbiotic organisms.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"extracellular region","termid":"GO:0005576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005576"],"is_obsolete":false,"name":"extraorganismal space","termid":"GO:0043245"}


id: PBO:0005726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannosyltransferase Imt2","termid":"PBO:0005726"}


id: FYPO:0006327
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of protein exchange in the medial cortical nodes is abnormal. Normally, myosin and other node proteins are turned over between the nodes and elsewhere at rates consistent for each protein.","definition_xrefs":["PMID:21422229","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring assembly","termid":"FYPO:0000161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000032"}],"interesting_parent_ids":["FYPO:0004803","FYPO:0000631","FYPO:0000032","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal rate of protein exchange in medial cortical node","synonyms":[{"name":"abnormal rate of protein exchange in medial cortical node during mitotic cell cycle","type":"related"},{"name":"abnormal rate of protein exchange in medial cortical node during vegetative growth","type":"exact"}],"termid":"FYPO:0006327"}


id: PBO:0083021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Deleted ORF; does not encode a protein; included in the original annotation of Chromosome III but deleted due to sequence correction","termid":"PBO:0083021"}


id: PR:Q9US36
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- klf1 gene.","definition_xrefs":["UniProtKB:Q9US36","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein klf1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1039.05c","synonyms":[{"name":"Spom972h-klf1","type":"exact"},{"name":"krueppel-like zinc finger transcription factor 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9US36"}


id: PBO:0057826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3145","termid":"PBO:0057826"}


id: PBO:0044705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDX5 pseudogene 1","termid":"PBO:0044705"}


id: PBO:0088531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uridine kinase Yfh7","termid":"PBO:0088531"}


id: PBO:0061340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NPL4 homolog, ubiquitin recognition factor","termid":"PBO:0061340"}


id: SO:0000593
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.","direct_ancestors":[{"relation_name":"derives_from","term_name":"C_D_box_snoRNA_primary_transcript","termid":"SO:0000595"},{"relation_name":"is_a","term_name":"snoRNA","termid":"SO:0000275"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C_D_box_snoRNA","synonyms":[{"name":"C D box snoRNA","type":"exact"},{"name":"C/D box snoRNA","type":"exact"},{"name":"SNORD","type":"exact"},{"name":"box C/D snoRNA","type":"exact"}],"termid":"SO:0000593"}


id: PBO:0050405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein C pseudogene 7","termid":"PBO:0050405"}


id: PBO:0042303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD14 molecule","termid":"PBO:0042303"}


id: GO:0060334
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of an interferon-gamma-mediated signaling pathway.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine-mediated signaling pathway","termid":"GO:0001959"},{"relation_name":"is_a","term_name":"regulation of response to type II interferon","termid":"GO:0060330"},{"relation_name":"regulates","term_name":"type II interferon-mediated signaling pathway","termid":"GO:0060333"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of type II interferon-mediated signaling pathway","synonyms":[{"name":"regulation of gamma-interferon-mediated signaling pathway","type":"related"},{"name":"regulation of immune interferon signaling pathway","type":"exact"},{"name":"regulation of interferon-gamma-mediated signaling pathway","type":"exact"},{"name":"regulation of interferon-gamma-mediated signalling pathway","type":"exact"},{"name":"regulation of type II IFN-mediated signaling pathway","type":"broad"}],"termid":"GO:0060334"}


id: CHEBI:16027
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AMP","termid":"CHEBI:16027"}


id: PBO:0029733
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_papulacandin_D","termid":"PBO:0029733"}


id: GO:0043465
data:
  {"annotated_genes":["SJAG_05006"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92685],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001172"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of fermentation, the anaerobic enzymatic conversion of organic compounds, especially carbohydrates, to other compounds, especially to ethyl alcohol, resulting in energy in the form of adenosine triphosphate (ATP).","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of generation of precursor metabolites and energy","termid":"GO:0043467"},{"relation_name":"regulates","term_name":"fermentation","termid":"GO:0006113"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05006":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"regulation of fermentation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0043465","terms_by_termid":{"GO:2001172":null}}


id: PBO:0001945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isocitrate dehydrogenase Idp1 (predicted)","termid":"PBO:0001945"}


id: SO:0000088
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene located in mitochondrial sequence.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"mitochondrial_sequence","termid":"SO:0000737"},{"relation_name":"is_a","term_name":"gene","termid":"SO:0000704"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mt_gene","secondary_identifiers":["http://en.wikipedia.org/wiki/Mitochondrial_gene"],"synonyms":[{"name":"mitochondrial gene","type":"exact"},{"name":"mt gene","type":"exact"}],"termid":"SO:0000088"}


id: PBO:0014613
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved in Schizosaccharomyces","termid":"PBO:0014613"}


id: PBO:0084913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitotic exit network regulator; forms GTPase-activating Bfa1p-Bub2p complex that binds Tem1p and spindle pole bodies, blocks cell cycle progression before anaphase in response to spindle and kinetochore damage","termid":"PBO:0084913"}


id: GO:0008625
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals in which a signal is conveyed from the cell surface to trigger the apoptotic death of a cell. The pathway starts with a ligand binding to a death domain receptor on the cell surface, and ends when the execution phase of apoptosis is triggered.","definition_xrefs":["GOC:mah","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic apoptotic signaling pathway","termid":"GO:0097191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"extrinsic apoptotic signaling pathway via death domain receptors","synonyms":[{"name":"death receptor-mediated apoptosis","type":"narrow"},{"name":"induction of apoptosis via death domain receptors","type":"related"},{"name":"induction of apoptosis via death receptors","type":"exact"}],"termid":"GO:0008625"}


id: PBO:0038718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin gamma 1 pseudogene 13","termid":"PBO:0038718"}


id: PBO:0091408
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"assembly at damage sites is facilitated by Rad57 independently of Swi5","termid":"PBO:0091408"}


id: GO:2000627
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of miRNA catabolic process.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of catabolic process","termid":"GO:0009896"},{"relation_name":"is_a","term_name":"regulation of miRNA catabolic process","termid":"GO:2000625"},{"relation_name":"is_a","term_name":"positive regulation of miRNA metabolic process","termid":"GO:2000630"},{"relation_name":"positively_regulates","term_name":"miRNA catabolic process","termid":"GO:0010587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of miRNA catabolic process","synonyms":[{"name":"positive regulation of microRNA catabolic process","type":"exact"}],"termid":"GO:2000627"}


id: PBO:0004046
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"opposite strand to sno20","termid":"PBO:0004046"}


id: GO:0002829
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of a type 2 immune response.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of type 2 immune response","termid":"GO:0002828"},{"relation_name":"is_a","term_name":"negative regulation of immune response","termid":"GO:0050777"},{"relation_name":"negatively_regulates","term_name":"type 2 immune response","termid":"GO:0042092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of type 2 immune response","synonyms":[{"name":"down regulation of type 2 immune response","type":"exact"},{"name":"down-regulation of type 2 immune response","type":"exact"},{"name":"downregulation of type 2 immune response","type":"exact"},{"name":"inhibition of type 2 immune response","type":"narrow"},{"name":"negative regulation of T-helper 2 type immune response","type":"narrow"},{"name":"negative regulation of Th2 immune response","type":"narrow"}],"termid":"GO:0002829"}


id: PR:O60153
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC19C7.04c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60153"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C19C7.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19C7.04c","synonyms":[{"name":"Spom972h-SPBC19C7.04c","type":"exact"}],"termid":"PR:O60153"}


id: PBO:0066138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RB transcriptional corepressor 1","termid":"PBO:0066138"}


id: PBO:0035739
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_rate_of_protein_movement_within_plasma_membrane_at_cell_side","termid":"PBO:0035739"}


id: GO:0097445
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Electron dense projection extending from the cytomatrix into the cytoplasm on which synaptic vesicles are tethered.","definition_xrefs":["PMID:15381754","NIF_Subcellular:sao494258938"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"presynaptic active zone","termid":"GO:0048786"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"presynaptic active zone dense projection","synonyms":[{"name":"active zone dense projection","type":"exact"},{"name":"pre-synaptic active zone dense projection","type":"exact"}],"termid":"GO:0097445"}


id: GO:1903179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of dopamine biosynthetic process.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:bf","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biosynthetic process","termid":"GO:0009889"},{"relation_name":"is_a","term_name":"regulation of dopamine metabolic process","termid":"GO:0042053"},{"relation_name":"regulates","term_name":"dopamine biosynthetic process","termid":"GO:0042416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of dopamine biosynthetic process","synonyms":[{"name":"regulation of dopamine anabolism","type":"exact"},{"name":"regulation of dopamine biosynthesis","type":"exact"},{"name":"regulation of dopamine formation","type":"exact"},{"name":"regulation of dopamine synthesis","type":"exact"}],"termid":"GO:1903179"}


id: PBO:0040312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase F1 subunit alpha pseudogene 4","termid":"PBO:0040312"}


id: PBO:0004651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP-ribosylation factor Sar1","termid":"PBO:0004651"}


id: MOD:00955
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-serine residue and an L-histidine residue to release water and form tele- or pros-(2-amino-2-carboxyethyl)histidine.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked residues with loss of water","termid":"MOD:00954"},{"relation_name":"is_a","term_name":"crosslinked L-histidine residue","termid":"MOD:02048"},{"relation_name":"is_a","term_name":"crosslinked L-serine residue","termid":"MOD:02055"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alaninohistidine (serine crosslinked to tele or pros nitrogen of histidine)","synonyms":[{"name":"beta-alaninohistidine","type":"exact"}],"termid":"MOD:00955"}


id: GO:0006287
data:
  {"annotated_genes":["SJAG_02908","SJAG_02818"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103438,105204],"is_not":false,"summary":null,"term":"GO:0006287"}]},"cv_name":"biological_process","definition":"Repair of the damaged strand by the combined action of an apurinic endouclease that degrades a few bases on the damaged strand and a polymerase that synthesizes a 'patch' in the 5' to 3' direction, using the undamaged strand as a template.","definition_xrefs":["ISBN:1550091131"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA metabolic process","termid":"GO:0006259"},{"relation_name":"part_of","term_name":"base-excision repair","termid":"GO:0006284"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02818":null,"SJAG_02908":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006281"}],"interesting_parent_ids":["GO:0006259","GO:0008150","GO:0006281"],"is_obsolete":false,"name":"base-excision repair, gap-filling","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0006287","terms_by_termid":{"GO:0006287":null}}


id: PBO:0052505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 18","termid":"PBO:0052505"}


id: GO:0032002
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that binds interleukin-28 and interleukin-29. It is composed of an alpha and a beta receptor subunit (in human IFNLR1/IL28Ralpha & IL10RB) and either Interleukin-28 (IFNL2 or IFNL3) or Interleukin-29 (IFNL1).","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"interleukin-28 receptor complex","synonyms":[{"name":"IL-28 receptor complex","type":"exact"}],"termid":"GO:0032002"}


id: PBO:0004066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamine-fructose-6-phosphate transaminase (predicted)","termid":"PBO:0004066"}


id: PR:G2TRP0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tam7 gene.","definition_xrefs":["UniProtKB:G2TRP0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein tam7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC409.23","synonyms":[{"name":"Spom972h-tam7","type":"exact"},{"name":"transcripts altered in meiosis protein 7 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:G2TRP0"}


id: GO:0160135
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A phospholipase C-activating receptor G protein-coupled receptor signaling pathway initiated by endothelin binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:35284927"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipase C-activating G protein-coupled receptor signaling pathway","termid":"GO:0007200"},{"relation_name":"is_a","term_name":"endothelin receptor signaling pathway","termid":"GO:0086100"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"phospholipase C-activating endothelin receptor signaling pathway","termid":"GO:0160135"}


id: PBO:0017747
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IMPACT homolog, cytoplasmic translational regulator Yih1 (predicted)","termid":"PBO:0017747"}


id: PBO:0088781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit IV","termid":"PBO:0088781"}


id: PBO:0087217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-AdoMet-dependent methyltransferase involved in lipid homeostasis; mediates resistance to a drug cantharidin","termid":"PBO:0087217"}


id: PBO:0073616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SID1 transmembrane family member 2","termid":"PBO:0073616"}


id: PBO:0087922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription factor that is activated by a MAPK signaling cascade; activates genes involved in mating or pseudohyphal/invasive growth pathways; cooperates with Tec1p transcription factor to regulate genes specific for invasive growth","termid":"PBO:0087922"}


id: PBO:0051379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 6-21 (non-functional)","termid":"PBO:0051379"}


id: GO:0052838
data:
  {"annotated_genes":["SJAG_00827"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103474],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052837"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving thiazole, a five-membered heterocyclic ring structure containing a sulfur in the 1-position and a nitrogen in the 3-position.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"oxazole or thiazole metabolic process","termid":"GO:0046484"},{"relation_name":"is_a","term_name":"organonitrogen compound metabolic process","termid":"GO:1901564"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00827":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"thiazole metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"thiazole metabolism","type":"exact"}],"termid":"GO:0052838","terms_by_termid":{"GO:0052837":null}}


id: GO:1904080
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any positive regulation of transcription from RNA polymerase II promoter that is involved in neuron fate specification.","definition_xrefs":["GOC:kmv","GOC:TermGenie","PMID:11959845","GO_REF:0000060"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter involved in neuron fate specification (obsolete GO:1904080)","synonyms":[{"name":"activation of global transcription from RNA polymerase II promoter involved in neuron fate specification","type":"related"},{"name":"activation of transcription from RNA polymerase II promoter involved in neuron fate specification","type":"exact"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter involved in neuron fate specification","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter involved in neuron fate specification","type":"related"},{"name":"positive regulation of transcription from Pol II promoter involved in neuron fate specification","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter, global involved in neuron fate specification","type":"related"},{"name":"stimulation of global transcription from RNA polymerase II promoter involved in neuron fate specification","type":"narrow"},{"name":"stimulation of transcription from RNA polymerase II promoter involved in neuron fate specification","type":"exact"},{"name":"up regulation of global transcription from RNA polymerase II promoter involved in neuron fate specification","type":"related"},{"name":"up regulation of transcription from RNA polymerase II promoter involved in neuron fate specification","type":"exact"},{"name":"up-regulation of global transcription from RNA polymerase II promoter involved in neuron fate specification","type":"related"},{"name":"up-regulation of transcription from RNA polymerase II promoter involved in neuron fate specification","type":"exact"},{"name":"upregulation of global transcription from RNA polymerase II promoter involved in neuron fate specification","type":"related"},{"name":"upregulation of transcription from RNA polymerase II promoter involved in neuron fate specification","type":"exact"}],"termid":"GO:1904080"}


id: GO:0015982
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of coupled solute translocation in which two solutes equilibrate across an osmotic barrier, the translocation of solute being coupled to the translocation of the other in the opposite direction.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete antiport (obsolete GO:0015982)","synonyms":[{"name":"antiport","type":"exact"}],"termid":"GO:0015982"}


id: PR:Q9UUM2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- swi1 gene.","definition_xrefs":["UniProtKB:Q9UUM2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mating-type switching protein swi1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC216.06c","synonyms":[{"name":"Spom972h-swi1","type":"exact"},{"name":"replication fork protection complex subunit swi1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UUM2"}


id: PBO:0078360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (TTC) 5-1","termid":"PBO:0078360"}


id: PBO:0085366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphoribosylpyrophosphate amidotransferase (PRPPAT); catalyzes first step of the 'de novo' purine nucleotide biosynthetic pathway; also known as amidophosphoribosyltransferase","termid":"PBO:0085366"}


id: PBO:0042673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEA cell adhesion molecule pseudogene 7","termid":"PBO:0042673"}


id: FYECO:0000354
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which phleomycin was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ phleomycin","termid":"FYECO:0000354"}


id: PBO:0113329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; contributes to high inhibitor stress tolerance; deletion mutant is viable","termid":"PBO:0113329"}


id: GO:0072204
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that mediates the transfer of information from one cell to another and contributes to the progression of the metanephros over time, from its formation to the mature organ.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling involved in kidney development","termid":"GO:0060995"},{"relation_name":"part_of","term_name":"metanephros development","termid":"GO:0001656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"cell-cell signaling involved in metanephros development","synonyms":[{"name":"cell-cell signalling involved in metanephros development","type":"exact"}],"termid":"GO:0072204"}


id: GO:0019598
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of (R)-mandelate into other compounds, including catechol.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol-containing compound biosynthetic process","termid":"GO:0009713"},{"relation_name":"is_a","term_name":"mandelate catabolic process","termid":"GO:0019596"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"(R)-mandelate catabolic process to catechol","synonyms":[{"name":"(R)-mandelate breakdown to catechol","type":"exact"},{"name":"(R)-mandelate degradation to catechol","type":"exact"}],"termid":"GO:0019598"}


id: GO:0032453
data:
  {"annotated_genes":["SJAG_03635","SJAG_03286","SJAG_01465"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[83530],"is_not":false,"summary":null,"term":"GO:0032453"},{"annotations":[92765,83531,109164],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034647"}]},"cv_name":"molecular_function","definition":"Catalysis of the removal of a methyl group from a modified lysine residue at position 4 of the histone H3 protein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3 demethylase activity","termid":"GO:0141052"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01465":null,"SJAG_03286":null,"SJAG_03635":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0032452"}],"interesting_parent_ids":["GO:0003674","GO:0140096","GO:0003824","GO:0032452"],"is_obsolete":false,"name":"histone H3K4 demethylase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9822461","Reactome:R-HSA-9822467"],"synonyms":[{"name":"histone H3-K4 demethylase activity","type":"exact"},{"name":"histone H3-methyl-lysine-4 demethylase activity","type":"exact"},{"name":"histone demethylase activity (H3-K4 specific)","type":"exact"},{"name":"histone demethylase activity (H3K4-specific)","type":"exact"}],"termid":"GO:0032453","terms_by_termid":{"GO:0032453":null,"GO:0034647":null}}


id: PBO:0052281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine demethylase 7A","termid":"PBO:0052281"}


id: GO:0043008
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a protein or protein complex using energy from ATP hydrolysis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"ATP-dependent protein binding","termid":"GO:0043008"}


id: PR:O13834
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ptr1 gene.","definition_xrefs":["UniProtKB:O13834","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E3 ubiquitin-protein ligase ptr1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19D5.04","synonyms":[{"name":"Spom972h-ptr1","type":"exact"},{"name":"poly(A)+ RNA transport protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13834"}


id: GO:1905541
data:
  {"annotated_genes":["SJAG_05346","SJAG_03591","SJAG_02605","SJAG_00991"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87840,89422,94979,106636],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905589"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of L-arginine import across plasma membrane.","definition_xrefs":["PMID:14718525","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of amino acid import across plasma membrane","termid":"GO:0010958"},{"relation_name":"is_a","term_name":"regulation of organic acid transport","termid":"GO:0032890"},{"relation_name":"regulates","term_name":"L-arginine import across plasma membrane","termid":"GO:0097638"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00991":null,"SJAG_02605":null,"SJAG_03591":null,"SJAG_05346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of L-arginine import across plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1902826","GO:0010963"],"synonyms":[{"name":"regulation of L-arginine import","type":"broad"},{"name":"regulation of L-arginine import into cell","type":"exact"}],"termid":"GO:1905541","terms_by_termid":{"GO:1905589":null}}


id: GO:0031364
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of an amino group from the side chain of an N-terminal asparagine or glutamine residue of a protein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal protein amino acid deamination","termid":"GO:0031363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"N-terminal protein amino acid deamination, from side chain","termid":"GO:0031364"}


id: PBO:0072846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"suppressor APC domain containing 2 pseudogene 1","termid":"PBO:0072846"}


id: PBO:0044124
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTAGE family member 10, pseudogene","termid":"PBO:0044124"}


id: GO:0002022
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The neurological process in which the brain senses excessive caloric intake.","definition_xrefs":["PMID:12161655"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system process","termid":"GO:0050877"},{"relation_name":"part_of","term_name":"response to dietary excess","termid":"GO:0002021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of dietary excess","termid":"GO:0002022"}


id: PATO:0000449
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000449 increased percentage (obsolete PATO:0000449)","termid":"PATO:0000449"}


id: GO:0035379
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of carbon dioxide (CO2) from one side of a membrane to the other.","definition_xrefs":["GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter activity","termid":"GO:0022857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"carbon dioxide transmembrane transporter activity","secondary_identifiers":["Reactome:R-HSA-1237042","Reactome:R-HSA-1247645","Reactome:R-HSA-1247649","Reactome:R-HSA-1237069"],"termid":"GO:0035379"}


id: PBO:0087287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Signal transducing MEK kinase; involved in pheromone response and pseudohyphal/invasive growth pathways where it phosphorylates Ste7p, and the high osmolarity response pathway, via phosphorylation of Pbs2p; regulated by Ste20p and Ste50p; protein abundance increases in response to DNA replication stress","termid":"PBO:0087287"}


id: PBO:0028576
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_farnesyltransferase_activity","termid":"PBO:0028576"}


id: GO:0046914
data:
  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id: PBO:0039208
data:
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id: PBO:0091624
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HHE domain cation binding protein","termid":"PBO:0091624"}


id: PBO:0063446
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDE7A divergent transcript","termid":"PBO:0063446"}


id: PBO:0000266
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-coding RNA, poly(A)-bearing (predicted)","termid":"PBO:0000266"}


id: PBO:0049766
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA complex group 4 pseudogene 3","termid":"PBO:0049766"}


id: GO:0015059
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete blue-sensitive opsin (obsolete GO:0015059)","synonyms":[{"name":"blue-sensitive opsin","type":"exact"}],"termid":"GO:0015059"}


id: PBO:0053826
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1090","termid":"PBO:0053826"}


id: PBO:0060850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIMA related kinase 1","termid":"PBO:0060850"}


id: PBO:0042086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 153","termid":"PBO:0042086"}


id: PR:O59726
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fnx2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59726"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar membrane amino acid uptake transporter fnx2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3E7.06c","synonyms":[{"name":"Spom972h-fnx2","type":"exact"}],"termid":"PR:O59726"}


id: PBO:0004895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin Spn3","termid":"PBO:0004895"}


id: PR:Q9UTA3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A minor histocompatibility antigen H13 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01737","PRO:DNx","PANTHER:PTHR12174:SF23"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intramembrane protease C25B8.17 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25B8.17","secondary_identifiers":["UniProtKB:Q9UTA3"],"synonyms":[{"name":"Spom972h-HM13","type":"exact"}],"termid":"PR:Q9UTA3"}


id: GO:0042071
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a leucokinin, any of several octapeptide hormones found in insects, and transmitting the signal to initiate a change in cell activity.","definition_xrefs":["GOC:mah","PMID:2716741","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor activity","termid":"GO:0038023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"leucokinin receptor activity","termid":"GO:0042071"}


id: FYPO:0000833
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell is normal (i.e. indistinguishable from wild type). Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in cell during vegetative growth","termid":"FYPO:0001316"},{"relation_name":"is_a","term_name":"normal protein level","termid":"FYPO:0004083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal protein level during vegetative growth","synonyms":[{"name":"normal protein level during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000833"}


id: _global:has_positive_regulatory_component_activity
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole.  More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.","direct_ancestors":[{"relation_name":"is_a","term_name":"has_regulatory_component_activity","termid":"_global:has_regulatory_component_activity"},{"relation_name":"is_a","term_name":"positively_regulated_by","termid":"_global:positively_regulated_by"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_positive_regulatory_component_activity","secondary_identifiers":["RO:0002015"],"termid":"_global:has_positive_regulatory_component_activity"}


id: PBO:0049253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRTP1 antisense RNA 1","termid":"PBO:0049253"}


id: PBO:0054812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2225","termid":"PBO:0054812"}


id: PBO:0069646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 923, pseudogene","termid":"PBO:0069646"}


id: PBO:0075107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 156","termid":"PBO:0075107"}


id: PBO:0044586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-box binding PAR bZIP transcription factor","termid":"PBO:0044586"}


id: PBO:0057311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 517b","termid":"PBO:0057311"}


id: GO:0019235
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events required for an organism to receive a slow pain stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. Slow pain is often subjectively described as an aching or throbbing pain; in humans, the signals from a slow pain stimulus are perceived and relayed along unmyelinated C fibers to the central nervous system, reaching their target in about 1 second. Slow pain is often associated with tissue destruction.","definition_xrefs":["PMID:38704307"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory perception of pain","termid":"GO:0019233"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sensory perception of slow pain","termid":"GO:0019235"}


id: PBO:0046221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin C pseudogene 14","termid":"PBO:0046221"}


id: _global:translation_of
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"X is translation of Y if Y is translated by ribosome to create X.","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation_of","termid":"_global:translation_of"}


id: PBO:0069450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 715, pseudogene","termid":"PBO:0069450"}


id: SO:0000728
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of a peptide that is able to excise itself and rejoin the remaining portions with a peptide bond.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cleaved_peptide_region","termid":"SO:0100011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"intein","secondary_identifiers":["http://en.wikipedia.org/wiki/Intein"],"synonyms":[{"name":"protein intron","type":"related"}],"termid":"SO:0000728"}


id: PBO:0083360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps the verified gene RPS2/YGL123W","termid":"PBO:0083360"}


id: PBO:0054230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1612","termid":"PBO:0054230"}


id: PBO:0026894
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_phosphorylation_of_RNA_polymerase_II_C-terminal_domain_serine_2_residues_during_nitrogen_starvation","termid":"PBO:0026894"}


id: PBO:0070811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 41","termid":"PBO:0070811"}


id: GO:0004240
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the release of N-terminal transit peptides from precursor proteins imported into the mitochondrion, typically with Arg in position P2.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial processing peptidase activity (obsolete GO:0004240)","synonyms":[{"name":"MPP","type":"exact"},{"name":"alpha-mitochondrial processing peptidase","type":"narrow"},{"name":"beta-mitochondrial processing peptidase","type":"narrow"},{"name":"matrix peptidase","type":"related"},{"name":"matrix processing peptidase","type":"related"},{"name":"matrix processing proteinase","type":"related"},{"name":"mitochondrial processing peptidase activity","type":"exact"},{"name":"mitochondrial protein precursor-processing proteinase activity","type":"related"},{"name":"processing enhancing peptidase (for one of two subunits)","type":"related"},{"name":"processing enhancing peptidase activity","type":"narrow"}],"termid":"GO:0004240"}


id: PBO:0042363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD160 molecule","termid":"PBO:0042363"}


id: PBO:0089308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyridoxamine 5'-phosphate oxidase Pdx3","termid":"PBO:0089308"}


id: PBO:0064116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polycystin 1, transient receptor potential channel interacting pseudogene 3","termid":"PBO:0064116"}


id: GO:0051295
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which the directed movement of the meiotic spindle to a specific location in the cell occurs.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of spindle localization","termid":"GO:0051293"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0000226","GO:0007049","GO:0007010","GO:0008150"],"is_obsolete":false,"name":"establishment of meiotic spindle localization","synonyms":[{"name":"establishment of meiotic spindle localisation","type":"exact"},{"name":"meiotic spindle positioning","type":"exact"},{"name":"spindle positioning during meiosis","type":"related"},{"name":"spindle positioning involved in meiotic cell cycle","type":"exact"}],"termid":"GO:0051295"}


id: PBO:0085256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peripheral membrane protein required for autophagy and CVT; required for cytoplasm-to-vacuole targeting (Cvt) pathway and efficient macroautophagy; cycles between the phagophore assembly site (PAS) and non-PAS locations; forms a complex with Atg9p and Atg27p","termid":"PBO:0085256"}


id: GO:0007454
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures derived from the labial disc are generated and organized. This includes the transformation of a labial imaginal disc from a monolayered epithelium in the larvae of holometabolous insects into recognizable adult structures including parts of the proboscis.","definition_xrefs":["GOC:bf","ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"imaginal disc morphogenesis","termid":"GO:0007560"},{"relation_name":"part_of","term_name":"labial disc development","termid":"GO:0035217"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"labial disc morphogenesis","synonyms":[{"name":"labial disc metamorphosis","type":"exact"}],"termid":"GO:0007454"}


id: GO:0044319
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of a cell along or through a wound gap that contributes to the reestablishment of a continuous surface.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration","termid":"GO:0016477"},{"relation_name":"part_of","term_name":"epiboly involved in wound healing","termid":"GO:0090505"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"wound healing, spreading of cells","synonyms":[{"name":"cell migration involved in wound healing epiboly","type":"exact"}],"termid":"GO:0044319"}


id: GO:1902719
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of binding or confining copper ions in an extracellular area such that they are separated from other components of a biological system.","definition_xrefs":["GO_REF:0000058","PMID:3099306","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete extracellular sequestering of copper ion (obsolete GO:1902719)","synonyms":[{"name":"extracellular sequestering of copper ion","type":"exact"}],"termid":"GO:1902719"}


id: PBO:0049772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA complex group 4 pseudogene 11","termid":"PBO:0049772"}


id: FYPO:0007940
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which any process of chromatin organization is normal (i.e. indistinguishable from wild type). Chromatin organization results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.","definition_xrefs":["PomBase:val"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"},{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal chromatin organization","termid":"FYPO:0007940"}


id: PBO:0086593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; expression downregulated by treatment with 8-methoxypsoralen plus UVA irradiation; not an essential gene; YGR273C has a paralog, YMR295C, that arose from the whole genome duplication","termid":"PBO:0086593"}


id: PBO:0054205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1585","termid":"PBO:0054205"}


id: PBO:0036402
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"not functionally complemented by A. thaliana COQ6","termid":"PBO:0036402"}


id: GO:0090240
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the rate, frequency, or extent of histone H4 acetylation, the modification of histone H4 by the addition of an acetyl group.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of histone H4 acetylation (obsolete GO:0090240)","termid":"GO:0090240"}


id: PBO:0048360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde-3-phosphate dehydrogenase pseudogene 71","termid":"PBO:0048360"}


id: GO:0044202
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The outer, i.e. cytoplasm-facing, lipid bilayer of the host nuclear envelope; continuous with the endoplasmic reticulum of the host cell and sometimes studded with ribosomes.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host organelle outer membrane","termid":"GO:0039661"},{"relation_name":"is_a","term_name":"host cell nuclear membrane","termid":"GO:0044200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell nuclear outer membrane","termid":"GO:0044202"}


id: PBO:0058038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4259","termid":"PBO:0058038"}


id: PBO:0062621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 11 subfamily A member 1","termid":"PBO:0062621"}


id: FYPO:0006784
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which vacuoles tubule-shaped.","definition_xrefs":["PMID:30451685","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vacuolar morphology during vegetative growth","termid":"FYPO:0000368"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"tubular vacuole morphology during vegetative growth","synonyms":[{"name":"tubular vacuole morphology during mitotic cell cycle","type":"related"},{"name":"tubular-shaped vacuoles during vegetative growth","type":"exact"}],"termid":"FYPO:0006784"}


id: PBO:0067822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 124","termid":"PBO:0067822"}


id: FYPO:0006336
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleation of microtubules from one or more microtubule organizing centers (MTOCs) occurs to a lesser extent than normal during mitosis.","definition_xrefs":["PMID:8834801","GO:0051418","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased microtubule nucleation during vegetative growth","termid":"FYPO:0006335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"decreased mitotic microtubule nucleation","synonyms":[{"name":"decreased microtubule nucleation by microtubule organizing center during mitosis","type":"exact"},{"name":"decreased microtubule nucleation during M phase of mitotic cell cycle","type":"related"},{"name":"decreased microtubule nucleation during mitosis","type":"exact"},{"name":"decreased mitotic microtubule nucleation during vegetative growth","type":"exact"},{"name":"reduced mitotic microtubule nucleation","type":"exact"}],"termid":"FYPO:0006336"}


id: PBO:0059694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO2 pseudogene 2","termid":"PBO:0059694"}


id: MOD:01757
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a serine residue with the Proteome Sciences TMT6plex-130 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TMT6plex reporter+balance reagent O-acylated residue","termid":"MOD:01719"},{"relation_name":"is_a","term_name":"TMT6plex-130 reporter+balance reagent acylated residue","termid":"MOD:01752"},{"relation_name":"is_a","term_name":"O3-acylated L-serine","termid":"MOD:02003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"TMT6plex-130 reporter+balance reagent O3-acylated serine","synonyms":[{"name":"3-[(2,6-dimethylpiperidin-1-yl)acetyl]amino)propanoyl","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"}],"termid":"MOD:01757"}


id: GO:0018901
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 2,4-dichlorophenoxyacetic acid, a chlorinated phenoxy compound which functions as a systemic herbicide and is used to control many types of broadleaf weeds.","definition_xrefs":["UM-BBD_pathwayID:2,4d"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"2,4-dichlorophenoxyacetic acid metabolic process","secondary_identifiers":["UM-BBD_pathwayID:2\\,4-d"],"synonyms":[{"name":"2,4-D metabolic process","type":"exact"},{"name":"2,4-D metabolism","type":"exact"},{"name":"2,4-dichlorophenoxyacetic acid metabolism","type":"exact"}],"termid":"GO:0018901"}


id: FYPO:0002187
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is inviable, is shaped in the form of a spheroid, and has a normal volume.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal volume spheroid vegetative cell","termid":"FYPO:0000946"},{"relation_name":"is_a","term_name":"inviable vegetative cell, abnormal cell shape, normal cell size","termid":"FYPO:0001511"},{"relation_name":"is_a","term_name":"inviable spheroid vegetative cell","termid":"FYPO:0002482"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0000005","FYPO:0000004","FYPO:0001985","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"inviable normal volume spheroid vegetative cell","synonyms":[{"name":"inviable normal volume rounded vegetative cell","type":"exact"},{"name":"inviable normal volume spheroid cell during vegetative growth","type":"exact"},{"name":"inviable normal volume spheroid vegetative cell during mitotic cell cycle","type":"related"},{"name":"lethal; normal volume spheroid vegetative cell","type":"exact"}],"termid":"FYPO:0002187"}


id: GO:1903648
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of chlorophyll catabolic process.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:24719469"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of chlorophyll catabolic process","termid":"GO:0010271"},{"relation_name":"is_a","term_name":"positive regulation of tetrapyrrole catabolic process","termid":"GO:1901406"},{"relation_name":"positively_regulates","term_name":"chlorophyll catabolic process","termid":"GO:0015996"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"positive regulation of chlorophyll catabolic process","synonyms":[{"name":"activation of chlorophyll breakdown","type":"narrow"},{"name":"activation of chlorophyll catabolic process","type":"narrow"},{"name":"activation of chlorophyll catabolism","type":"narrow"},{"name":"activation of chlorophyll degradation","type":"narrow"},{"name":"positive regulation of chlorophyll breakdown","type":"exact"},{"name":"positive regulation of chlorophyll catabolism","type":"exact"},{"name":"positive regulation of chlorophyll degradation","type":"exact"},{"name":"up regulation of chlorophyll breakdown","type":"exact"},{"name":"up regulation of chlorophyll catabolic process","type":"exact"},{"name":"up regulation of chlorophyll catabolism","type":"exact"},{"name":"up regulation of chlorophyll degradation","type":"exact"},{"name":"up-regulation of chlorophyll breakdown","type":"exact"},{"name":"up-regulation of chlorophyll catabolic process","type":"exact"},{"name":"up-regulation of chlorophyll catabolism","type":"exact"},{"name":"up-regulation of chlorophyll degradation","type":"exact"},{"name":"upregulation of chlorophyll breakdown","type":"exact"},{"name":"upregulation of chlorophyll catabolic process","type":"exact"},{"name":"upregulation of chlorophyll catabolism","type":"exact"},{"name":"upregulation of chlorophyll degradation","type":"exact"}],"termid":"GO:1903648"}


id: PBO:0086214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that binds to DNA mismatches; forms heterodimers with Msh3p and Msh6p that bind to DNA mismatches to initiate the mismatch repair process; contains a Walker ATP-binding motif required for repair activity and involved in interstrand cross-link repair; Msh2p-Msh6p binds to and hydrolyzes ATP; required for silencing at the silent mating-type loci and telomeres","termid":"PBO:0086214"}


id: SO:0001466
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An UST located in the 5'UTR of a protein-coding transcript.","definition_xrefs":["SO:nlw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UST","termid":"SO:0001464"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_prime_UST","synonyms":[{"name":"5' UST","type":"related"}],"termid":"SO:0001466"}


id: PBO:0028729
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_hercynylcysteine_sulfoxide_level","termid":"PBO:0028729"}


id: PBO:0082254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha subunit of Type II geranylgeranyltransferase; required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p","termid":"PBO:0082254"}


id: FYPO:0001739
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of pantothenate into the cell occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal pantothenate import","termid":"FYPO:0001737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"increased pantothenate import","synonyms":[{"name":"increased pantothenate import during mitotic cell cycle","type":"related"},{"name":"increased pantothenate import during vegetative growth","type":"exact"},{"name":"increased pantothenate import into cell","type":"exact"},{"name":"increased pantothenate uptake","type":"exact"},{"name":"increased pantothenic acid import","type":"related"}],"termid":"FYPO:0001739"}


id: PBO:0071926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S4X pseudogene 3","termid":"PBO:0071926"}


id: GO:0140033
data:
  {"annotated_genes":["SJAG_02500","SJAG_00837","SJAG_00591","SJAG_02701","SJAG_05252","SJAG_02625"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78966,74179,75774,69863,77816,77482],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070577"}]},"cv_name":"molecular_function","definition":"Binding to a protein upon acetylation of the target protein.","definition_xrefs":["PMID:26060076"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modification-dependent protein binding","termid":"GO:0140030"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00591":null,"SJAG_00837":null,"SJAG_02500":null,"SJAG_02625":null,"SJAG_02701":null,"SJAG_05252":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"acetylation-dependent protein binding","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0140033","terms_by_termid":{"GO:0070577":null}}


id: GO:0047124
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (3S,5S)-3,5-diaminohexanoate + H2O + NAD+ = (S)-5-amino-3-oxo-hexanoate + H+ + NADH + NH4.","definition_xrefs":["EC:1.4.1.11","RHEA:19633"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor","termid":"GO:0016639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"L-erythro-3,5-diaminohexanoate dehydrogenase activity","secondary_identifiers":["MetaCyc:1.4.1.11-RXN","KEGG_REACTION:R03349"],"synonyms":[{"name":"L-3,5-diaminohexanoate dehydrogenase activity","type":"related"},{"name":"L-erythro-3,5-diaminohexanoate:NAD+ oxidoreductase (deaminating)","type":"related"}],"termid":"GO:0047124"}


id: GO:0099174
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the physical form of a presynapse.","definition_xrefs":["GOC:tb","GOC:ai","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of synapse organization","termid":"GO:0050807"},{"relation_name":"regulates","term_name":"presynapse organization","termid":"GO:0099172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of presynapse organization","synonyms":[{"name":"regulation of presynapse organisation","type":"exact"},{"name":"regulation of presynapse organization and biogenesis","type":"related"},{"name":"regulation of presynapse structure","type":"exact"}],"termid":"GO:0099174"}


id: GO:0060593
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of a cell in the epidermis resulting in the formation of the mammary line. The mammary line is a ridge of epidermal cells that will form the mammary placodes.","definition_xrefs":["GOC:dph","PMID:16168142"],"gene_count":0,"genotype_count":0,"name":"obsolete Wnt signaling pathway involved in mammary gland specification (obsolete GO:0060593)","synonyms":[{"name":"Wnt receptor signaling pathway involved in mammary gland specification","type":"exact"},{"name":"Wnt receptor signalling pathway involved in mammary gland specification","type":"exact"},{"name":"Wnt-activated signaling pathway involved in mammary gland specification","type":"exact"}],"termid":"GO:0060593"}


id: GO:0044433
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of cytoplasmic vesicle, a vesicle formed of membrane or protein, found in the cytoplasm of a cell.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cytoplasmic vesicle part (obsolete GO:0044433)","termid":"GO:0044433"}


id: PBO:0066742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 39","termid":"PBO:0066742"}


id: GO:0086057
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a calcium ion by a voltage-gated channel across the plasma membrane of a bundle of His cardiac muscle cell that contributes to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated calcium channel activity involved in cardiac muscle cell action potential","termid":"GO:0086007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"voltage-gated calcium channel activity involved in bundle of His cell action potential","synonyms":[{"name":"voltage-gated calcium channel activity involved in bundle of His cardiac muscle cell action potential","type":"exact"}],"termid":"GO:0086057"}


id: PBO:0030684
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-tapered_vegetative_cell","termid":"PBO:0030684"}


id: PBO:0035708
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K14_acetylation_during_vegetative_growth","termid":"PBO:0035708"}


id: GO:0098970
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which diffusing neurotransmitter receptor becomes trapped at the postsynaptic specialization membrane. This is typically due to interaction with components of the post-synaptic specialization.","definition_xrefs":["PMID:18832033"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor localization to synapse","termid":"GO:0097120"},{"relation_name":"is_a","term_name":"regulation of postsynaptic membrane neurotransmitter receptor levels","termid":"GO:0099072"},{"relation_name":"is_a","term_name":"neurotransmitter receptor diffusion trapping","termid":"GO:0099628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"postsynaptic neurotransmitter receptor diffusion trapping","termid":"GO:0098970"}


id: FYPO:0006820
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the rate of cell growth is abnormal. Cell growth is the irreversible increase in size over time by accretion and biosynthetic production of matter similar to that already present.","definition_xrefs":["GO:0016049","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell growth","termid":"FYPO:0002862"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal cell growth rate","termid":"FYPO:0006820"}


id: PBO:0078262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Cys (anticodon GCA) 1-1","termid":"PBO:0078262"}


id: PBO:0070595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 62","termid":"PBO:0070595"}


id: PBO:0079075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-iMet (anticodon CAT) 1-3","termid":"PBO:0079075"}


id: GO:0002528
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the extent to which blood vessels can be pervaded by fluid contributing to an acute inflammatory response.","definition_xrefs":["GOC:jal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vascular permeability","termid":"GO:0043114"},{"relation_name":"part_of","term_name":"acute inflammatory response","termid":"GO:0002526"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of vascular permeability involved in acute inflammatory response","synonyms":[{"name":"regulation of vascular permeability during acute inflammatory response","type":"related"}],"termid":"GO:0002528"}


id: PBO:0039763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenine phosphoribosyltransferase","termid":"PBO:0039763"}


id: GO:0071901
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of protein serine/threonine kinase activity.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein kinase activity","termid":"GO:0006469"},{"relation_name":"is_a","term_name":"regulation of protein serine/threonine kinase activity","termid":"GO:0071900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein serine/threonine kinase activity","termid":"GO:0071901"}


id: PBO:0028720
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_peroxisome_size","termid":"PBO:0028720"}


id: GO:0097279
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Histamine release triggered by the binding of an antigen to an IgE immunoglobulin bound to the cell surface. An example is mast cell histamine degranulation as a result of exposure of mast cell-bound IgE to alder tree pollen.","definition_xrefs":["GOC:rv","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histamine secretion mediated by immunoglobulin","termid":"GO:0097280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0023052","GO:0008150"],"is_obsolete":false,"name":"histamine secretion mediated by IgE immunoglobulin","synonyms":[{"name":"Ig-mediated histamine release","type":"broad"},{"name":"histamine secretion mediated by IgE antibody","type":"exact"}],"termid":"GO:0097279"}


id: FYPO:0008026
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed during mitotic M-phase in which the localization of a protein to CENP-A containing chromatin is increased.","definition_xrefs":["PMID:35970865","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to CENP-A containing chromatin","termid":"FYPO:0007295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased protein localization to CENP-A containing chromatin during mitosis","synonyms":[{"name":"increased protein localisation to CENP-A containing chromatin during mitosis","type":"exact"},{"name":"increased protein localisation to CENP-A containing chromatin during mitotic M-phase","type":"exact"},{"name":"increased protein localization to centromeric core region chromatin during mitosis","type":"exact"}],"termid":"FYPO:0008026"}


id: PR:Q10100
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nuclear transport factor 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear transport factor 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC15F9.03c","secondary_identifiers":["UniProtKB:Q10100"],"synonyms":[{"name":"NTF-2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-NUTF2","type":"exact"}],"termid":"PR:Q10100"}


id: PBO:0081771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 703","termid":"PBO:0081771"}


id: GO:0070906
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: aspartate(out) + alanine(in) = aspartate(in) + alanine(out).","definition_xrefs":["GOC:dh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid transmembrane transporter activity","termid":"GO:0005310"},{"relation_name":"is_a","term_name":"antiporter activity","termid":"GO:0015297"},{"relation_name":"is_a","term_name":"C4-dicarboxylate transmembrane transporter activity","termid":"GO:0015556"},{"relation_name":"is_a","term_name":"alanine transmembrane transporter activity","termid":"GO:0022858"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"aspartate:alanine antiporter activity","secondary_identifiers":["RHEA:33139"],"synonyms":[{"name":"aspartate-alanine antiporter activity","type":"exact"},{"name":"aspartate/alanine antiporter activity","type":"exact"}],"termid":"GO:0070906"}


id: MOD:00564
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Modification from Unimod Isotopic label. The Unimod term was extracted when it had not been approved. OBSOLETE because redundant to MOD:01505. Remap to MOD:01505, or one of the child terms MOD:01493 or MOD:01497.","definition_xrefs":["URL:http://docs.appliedbiosystems.com/pebiodocs/04351918.pdf","Unimod:214"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00564 Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry (obsolete MOD:00564)","synonyms":[{"name":"Representative mass and accurate mass for 116 & 117","type":"related"},{"name":"iTRAQ4plex","type":"related"}],"termid":"MOD:00564"}


id: PBO:0054111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1476","termid":"PBO:0054111"}


id: PBO:0080053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 24 pseudogene 1","termid":"PBO:0080053"}


id: PBO:0079665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBE2V1 pseudogene 13","termid":"PBO:0079665"}


id: PBO:0082479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Carbon source-responsive zinc-finger transcription factor; required for transcription of the glucose-repressed gene ADH2, of peroxisomal protein genes, and of genes required for ethanol, glycerol, and fatty acid utilization","termid":"PBO:0082479"}


id: PBO:0078737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA methyltransferase 1","termid":"PBO:0078737"}


id: PATO:0002465
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's resembling a prism.","direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prism shaped","synonyms":[{"name":"tent shaped","type":"related"}],"termid":"PATO:0002465"}


id: GO:1905539
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of postsynapse to nucleus signaling pathway.","definition_xrefs":["GOC:TermGenie","ISBN:9780071120005","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signal transduction","termid":"GO:0009966"},{"relation_name":"regulates","term_name":"postsynapse to nucleus signaling pathway","termid":"GO:0099527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of postsynapse to nucleus signaling pathway","synonyms":[{"name":"regulation of postsynaptic signaling to nucleus","type":"exact"}],"termid":"GO:1905539"}


id: PBO:0087322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Snf2p family member with ATP-dependent chromatin remodeling activity; has a role in silencing at the mating type locus, telomeres and centromeres; enriched at centromeres and is required for correct chromatin structure around centromeres, as well as at the boundary element of the silent HMR; recruited to DNA double-strand breaks (DSBs) where it promotes 5' strand resection of DSBs; potential Cdc28p substrate","termid":"PBO:0087322"}


id: GO:0102477
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 6C-glucosyl-2,5,7-trihydroxyflavanone = H+ + 6C-hexosyl chrysin + H2O.","definition_xrefs":["EC:4.2.1.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2,5,7-trihydroxyflavanone 6C-glucoside dehydratase activity","secondary_identifiers":["MetaCyc:RXN-14088"],"termid":"GO:0102477"}


id: GO:0014740
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of muscle hyperplasia.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle hyperplasia","termid":"GO:0014738"},{"relation_name":"is_a","term_name":"negative regulation of muscle adaptation","termid":"GO:0014745"},{"relation_name":"negatively_regulates","term_name":"muscle hyperplasia","termid":"GO:0014900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of muscle hyperplasia","termid":"GO:0014740"}


id: PBO:0064701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 37","termid":"PBO:0064701"}


id: PBO:0003848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperonin-containing T-complex gamma subunit Cct3","termid":"PBO:0003848"}


id: PBO:0049827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HDGF like 2","termid":"PBO:0049827"}


id: GO:0090064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that starts the inactive process of microtubule nucleation. Microtubule nucleation is the 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. Microtubule nucleation usually occurs from a specific site within a cell.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of microtubule nucleation","termid":"GO:0090063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"positively_regulates","termid":"GO:0000226"},{"rel_name":"positively_regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0000226"}],"interesting_parent_ids":["GO:0065003","GO:0007010","GO:0000226","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"activation of microtubule nucleation","termid":"GO:0090064"}


id: GO:0061591
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of a population of galactosylceramide molecules from one leaflet of the plasma membrane bilayer to the opposite leaflet as a result of a calcium stimulus.","definition_xrefs":["GOC:krc","PMID:23532839"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium activated phospholipid scrambling","termid":"GO:0061588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0061024","GO:0051179"],"is_obsolete":false,"name":"calcium activated galactosylceramide scrambling","termid":"GO:0061591"}


id: FYPO:0007320
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which stress granule assembly occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal stress granule assembly during vegetative growth","termid":"FYPO:0002347"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased stress granule assembly during vegetative growth","synonyms":[{"name":"increased cytoplasmic stress granule assembly during vegetative growth","type":"exact"},{"name":"increased stress granule assembly during mitotic cell cycle","type":"related"},{"name":"increased stress granule formation during vegetative growth","type":"exact"}],"termid":"FYPO:0007320"}


id: PBO:0031031
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_plasma_membrane_organization","termid":"PBO:0031031"}


id: PBO:0050999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intraflagellar transport associated protein","termid":"PBO:0050999"}


id: PBO:0073095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase complex subunit C pseudogene 4","termid":"PBO:0073095"}


id: PBO:0087439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit F of the V1 peripheral membrane domain of V-ATPase; part of the electrogenic proton pump found throughout the endomembrane system; required for the V1 domain to assemble onto the vacuolar membrane; the V1 peripheral membrane domain of vacuolar H+-ATPase (V-ATPase) has eight subunits","termid":"PBO:0087439"}


id: PATO:0001650
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A resistance to a stimulus which is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"resistant to","termid":"PATO:0001178"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased resistance to","synonyms":[{"name":"high resistance to","type":"exact"},{"name":"increased resistance","type":"exact"}],"termid":"PATO:0001650"}


id: GO:0052125
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism on or near its host organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete energy taxis on or near host (obsolete GO:0052125)","termid":"GO:0052125"}


id: PBO:0064787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase, Mg2+/Mn2+ dependent 1G","termid":"PBO:0064787"}


id: PBO:0040633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BarH like homeobox 2","termid":"PBO:0040633"}


id: PBO:0077769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOMM22 pseudogene 5","termid":"PBO:0077769"}


id: GO:1900176
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of a nodal signaling pathway, where the nodal signaling pathway is involved in determination of left/right asymmetry in the lateral mesoderm.","definition_xrefs":["GOC:TermGenie","GOC:vk","GOC:BHF","PMID:15084459"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry (obsolete GO:1900176)","synonyms":[{"name":"down-regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"},{"name":"downregulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"},{"name":"inhibition of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"narrow"},{"name":"negative regulation of nodal signalling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"}],"termid":"GO:1900176"}


id: PBO:0085102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclear protein putative transcription factor; required for growth of superficial pseudohyphae (which do not invade the agar substrate) but not for invasive pseudohyphal growth; may act together with Phd1p; potential Cdc28p substrate","termid":"PBO:0085102"}


id: PBO:0062420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 62 pseudogene","termid":"PBO:0062420"}


id: GO:0102513
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: delphinidin 3-O-beta-D-glucoside + 1-O-vanilloyl-beta-D-glucose = delphinidin 3,7-di O-beta-D-glucoside + vanillate + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete delphinidin 3-O-glucoside 5-O-glucosyltransferase (vanilloyl-glucose dependent) activity (obsolete GO:0102513)","termid":"GO:0102513"}


id: PBO:0058252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4539","termid":"PBO:0058252"}


id: PBO:0049748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HBS1 like translational GTPase","termid":"PBO:0049748"}


id: PBO:0043989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colony stimulating factor 3","termid":"PBO:0043989"}


id: PBO:0030092
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_cell_population_growth_on_dipeptide_nitrogen_source","termid":"PBO:0030092"}


id: FYPO:0001061
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of glutamine into the cell is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal amino acid import during vegetative growth","termid":"FYPO:0001361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abnormal glutamine import","synonyms":[{"name":"abnormal L-glutamine import","type":"narrow"},{"name":"abnormal L-glutamine import across plasma membrane","type":"exact"},{"name":"abnormal glutamine import during mitotic cell cycle","type":"related"},{"name":"abnormal glutamine import during vegetative growth","type":"exact"},{"name":"abnormal glutamine import into cell","type":"exact"},{"name":"abnormal glutamine uptake","type":"exact"}],"termid":"FYPO:0001061"}


id: PBO:0067349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 446, pseudogene","termid":"PBO:0067349"}


id: GO:0042171
data:
  {"annotated_genes":["SJAG_04041","SJAG_04792","SJAG_04323","SJAG_01957"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95848],"is_not":false,"summary":null,"term":"GO:0042171"},{"annotations":[86155,100080,87280],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003841"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of acyl groups from an acyl-CoA to lysophosphatidic acid to form phosphatidic acid.","definition_xrefs":["GOC:ab","PMID:16369050"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysophospholipid acyltransferase activity","termid":"GO:0071617"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01957":null,"SJAG_04041":null,"SJAG_04323":null,"SJAG_04792":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"lysophosphatidic acid acyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"LPAAT activity","type":"exact"}],"termid":"GO:0042171","terms_by_termid":{"GO:0003841":null,"GO:0042171":null}}


id: PATO:0000858
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000858 ocular reflex value (obsolete PATO:0000858)","termid":"PATO:0000858"}


id: PBO:0090298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Ppk33","termid":"PBO:0090298"}


id: GO:1904887
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a Wnt signalosome.","definition_xrefs":["GOC:bf","GO_REF:0000079","GOC:PARL","PMID:22899650","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"Wnt signalosome assembly","synonyms":[{"name":"LRP5/6 signalosome assembly","type":"exact"},{"name":"LRP5/6 signalosome formation","type":"exact"},{"name":"LRP6 signalosome assembly","type":"narrow"},{"name":"LRP6 signalosome formation","type":"narrow"},{"name":"Wnt signalosome complex assembly","type":"exact"},{"name":"Wnt signalosome complex formation","type":"exact"},{"name":"Wnt signalosome formation","type":"exact"},{"name":"Wnt-LRP5/6 signalosome assembly","type":"exact"},{"name":"Wnt-LRP5/6 signalosome formation","type":"exact"}],"termid":"GO:1904887"}


id: GO:2000588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of platelet-derived growth factor receptor-beta signaling pathway.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of platelet-derived growth factor receptor signaling pathway","termid":"GO:0010641"},{"relation_name":"is_a","term_name":"regulation of platelet-derived growth factor receptor-beta signaling pathway","termid":"GO:2000586"},{"relation_name":"positively_regulates","term_name":"platelet-derived growth factor receptor-beta signaling pathway","termid":"GO:0035791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of platelet-derived growth factor receptor-beta signaling pathway","synonyms":[{"name":"positive regulation of PDGF receptor-beta signaling pathway","type":"exact"},{"name":"positive regulation of PDGFR-beta signaling pathway","type":"exact"},{"name":"positive regulation of betaPDGF receptor signaling pathway","type":"exact"},{"name":"positive regulation of platelet-derived growth factor receptor-beta signalling pathway","type":"exact"}],"termid":"GO:2000588"}


id: GO:0033662
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The alternation by a symbiont of the levels of defense-related proteins in its host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by symbiont of host defense-related protein level (obsolete GO:0033662)","termid":"GO:0033662"}


id: GO:0004307
data:
  {"annotated_genes":["SJAG_04319"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[89150],"is_not":false,"summary":null,"term":"GO:0004307"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: CDP-ethanolamine + 1,2-diacylglycerol = CMP + a phosphatidylethanolamine.","definition_xrefs":["EC:2.7.8.1","RHEA:32943"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CDP-alcohol phosphatidyltransferase activity","termid":"GO:0017169"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04319":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016780"}],"interesting_parent_ids":["GO:0016780","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"ethanolaminephosphotransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-1482962","MetaCyc:ETHANOLAMINEPHOSPHOTRANSFERASE-RXN"],"synonyms":[{"name":"CDP-ethanolamine:1,2-diacylglycerol ethanolaminephosphotransferase activity","type":"related"},{"name":"CDPethanolamine diglyceride phosphotransferase activity","type":"related"},{"name":"EPT","type":"related"},{"name":"diacylglycerol ethanolaminephosphotransferase activity","type":"related"},{"name":"phosphorylethanolamine-glyceride transferase activity","type":"related"}],"termid":"GO:0004307","terms_by_termid":{"GO:0004307":null}}


id: PBO:0036193
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_centromeric_chromatin,_with_protein_mislocalized_to_nucleoplasm","termid":"PBO:0036193"}


id: GO:0010183
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the growth of pollen tube is directed towards the female gametophyte.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive chemotaxis","termid":"GO:0050918"},{"relation_name":"part_of","term_name":"pollen tube development","termid":"GO:0048868"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pollen tube guidance","termid":"GO:0010183"}


id: GO:0045254
data:
  {"annotated_genes":["SJAG_02158","SJAG_01402","SJAG_03290","SJAG_02006","SJAG_03064","SJAG_00866"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[83561,91109,95130,104686,110332,114525],"is_not":false,"summary":null,"term":"GO:0045254"}]},"cv_name":"cellular_component","definition":"A multi-enzyme complex that catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA. The complex comprises multiple copies of three enzymes referred to as E1, E2 and E3: pyruvate dehydrogenase (E1, which may be a homodimer or a heterotetramer of two alpha and two beta subunits, depending on species), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3). Additional proteins may also be present.","definition_xrefs":["PMID:36863425"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-ketoacid dehydrogenase complex","termid":"GO:0045240"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00866":null,"SJAG_01402":null,"SJAG_02006":null,"SJAG_02158":null,"SJAG_03064":null,"SJAG_03290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"pyruvate dehydrogenase complex","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0009364","Wikipedia:Pyruvate_dehydrogenase_complex"],"synonyms":[{"name":"pyruvate dehydrogenase complex (lipoamide)","type":"exact"}],"termid":"GO:0045254","terms_by_termid":{"GO:0045254":null}}


id: GO:0010040
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron(II) ion stimulus.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to iron ion","termid":"GO:0010039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to iron(II) ion","synonyms":[{"name":"response to iron(II)","type":"exact"}],"termid":"GO:0010040"}


id: GO:0008508
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in).","definition_xrefs":["TC:2.A.28.-.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bile acid transmembrane transporter activity","termid":"GO:0015125"},{"relation_name":"is_a","term_name":"monocarboxylate:sodium symporter activity","termid":"GO:0140161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"bile acid:sodium symporter activity","secondary_identifiers":["Reactome:R-HSA-194121","Reactome:R-HSA-194187","Reactome:R-HSA-433089"],"synonyms":[{"name":"sodium/bile acid symporter activity","type":"exact"}],"termid":"GO:0008508"}


id: PBO:0048121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fucosyltransferase 2","termid":"PBO:0048121"}


id: PBO:0067764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 64","termid":"PBO:0067764"}


id: PBO:0058382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4754","termid":"PBO:0058382"}


id: PBO:0058172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4467","termid":"PBO:0058172"}


id: GO:0010178
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the cleavage of the amide bond between IAA (auxin) and the conjugated amino acid.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds","termid":"GO:0016810"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016810","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"IAA-amino acid conjugate hydrolase activity","termid":"GO:0010178"}


id: PBO:0064182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group XI, pseudogene","termid":"PBO:0064182"}


id: PBO:0090061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial conserved fungal membrane protein Mug99","termid":"PBO:0090061"}


id: FYPO:0001745
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of biotin into the cell occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal biotin import","termid":"FYPO:0001744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased biotin import","synonyms":[{"name":"increased biotin import across plasma membrane","type":"exact"},{"name":"increased biotin import during mitotic cell cycle","type":"related"},{"name":"increased biotin import during vegetative growth","type":"exact"},{"name":"increased biotin import into cell","type":"exact"},{"name":"increased biotin uptake","type":"exact"}],"termid":"FYPO:0001745"}


id: PBO:0073034
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretin receptor","termid":"PBO:0073034"}


id: SO:0000268
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tRNA sequence that has a proline anticodon, and a 3' proline binding region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"proline_tRNA_primary_transcript","termid":"SO:0000225"},{"relation_name":"is_a","term_name":"tRNA","termid":"SO:0000253"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prolyl_tRNA","synonyms":[{"name":"prolyl tRNA","type":"exact"},{"name":"prolyl-transfer RNA","type":"exact"},{"name":"prolyl-transfer ribonucleic acid","type":"exact"}],"termid":"SO:0000268"}


id: PBO:0001256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phytochelatin synthetase","termid":"PBO:0001256"}


id: PBO:0001504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase epsilon subunit Dpb3","termid":"PBO:0001504"}


id: PBO:0050039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class II, DR beta 7 (pseudogene)","termid":"PBO:0050039"}


id: GO:0032967
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"positive regulation of collagen metabolic process","termid":"GO:0010714"},{"relation_name":"is_a","term_name":"regulation of collagen biosynthetic process","termid":"GO:0032965"},{"relation_name":"positively_regulates","term_name":"collagen biosynthetic process","termid":"GO:0032964"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of collagen biosynthetic process","synonyms":[{"name":"positive regulation of collagen anabolism","type":"exact"},{"name":"positive regulation of collagen biosynthesis","type":"exact"},{"name":"positive regulation of collagen formation","type":"exact"},{"name":"positive regulation of collagen synthesis","type":"exact"}],"termid":"GO:0032967"}


id: PBO:0002639
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.2.3.4","termid":"PBO:0002639"}


id: GO:0047955
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: A + glycerol = AH(2) + glycerone.","definition_xrefs":["EC:1.1.99.22","RHEA:17493"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"glycerol dehydrogenase (acceptor) activity","secondary_identifiers":["MetaCyc:GLYCEROL-DEHYDROGENASE-ACCEPTOR-RXN","KEGG_REACTION:R01045"],"synonyms":[{"name":"glycerol:(acceptor) 1-oxidoreductase activity","type":"related"},{"name":"glycerol:acceptor 1-oxidoreductase activity","type":"related"}],"termid":"GO:0047955"}


id: PBO:0035728
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K9_methylation_at_subtelomeric_heterochromatin_during_vegetative_growth","termid":"PBO:0035728"}


id: SO:0000090
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene from plastid sequence.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"plastid_sequence","termid":"SO:0000740"},{"relation_name":"is_a","term_name":"gene","termid":"SO:0000704"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plastid_gene","synonyms":[{"name":"plastid gene","type":"exact"}],"termid":"SO:0000090"}


id: GO:1900700
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of o-orsellinic acid biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular biosynthetic process","termid":"GO:0031328"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"positive regulation of secondary metabolite biosynthetic process","termid":"GO:1900378"},{"relation_name":"is_a","term_name":"regulation of o-orsellinic acid biosynthetic process","termid":"GO:1900698"},{"relation_name":"positively_regulates","term_name":"o-orsellinic acid biosynthetic process","termid":"GO:1900584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"positively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0019748","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"positive regulation of o-orsellinic acid biosynthetic process","synonyms":[{"name":"activation of o-orsellinic acid anabolism","type":"exact"},{"name":"activation of o-orsellinic acid biosynthesis","type":"exact"},{"name":"activation of o-orsellinic acid biosynthetic process","type":"narrow"},{"name":"activation of o-orsellinic acid formation","type":"exact"},{"name":"activation of o-orsellinic acid synthesis","type":"exact"},{"name":"positive regulation of o-orsellinic acid anabolism","type":"exact"},{"name":"positive regulation of o-orsellinic acid biosynthesis","type":"exact"},{"name":"positive regulation of o-orsellinic acid formation","type":"exact"},{"name":"positive regulation of o-orsellinic acid synthesis","type":"exact"},{"name":"up regulation of o-orsellinic acid anabolism","type":"exact"},{"name":"up regulation of o-orsellinic acid biosynthesis","type":"exact"},{"name":"up regulation of o-orsellinic acid biosynthetic process","type":"exact"},{"name":"up regulation of o-orsellinic acid formation","type":"exact"},{"name":"up regulation of o-orsellinic acid synthesis","type":"exact"},{"name":"up-regulation of o-orsellinic acid anabolism","type":"exact"},{"name":"up-regulation of o-orsellinic acid biosynthesis","type":"exact"},{"name":"up-regulation of o-orsellinic acid biosynthetic process","type":"exact"},{"name":"up-regulation of o-orsellinic acid formation","type":"exact"},{"name":"up-regulation of o-orsellinic acid synthesis","type":"exact"},{"name":"upregulation of o-orsellinic acid anabolism","type":"exact"},{"name":"upregulation of o-orsellinic acid biosynthesis","type":"exact"},{"name":"upregulation of o-orsellinic acid biosynthetic process","type":"exact"},{"name":"upregulation of o-orsellinic acid formation","type":"exact"},{"name":"upregulation of o-orsellinic acid synthesis","type":"exact"}],"termid":"GO:1900700"}


id: PBO:0060615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neutrophil cytosolic factor 1B pseudogene","termid":"PBO:0060615"}


id: PBO:0066025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAN binding protein 6","termid":"PBO:0066025"}


id: PBO:0083875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein that regulates pheromone-dependent morphogenesis; interacts with Sgt1p via a Leucine-Rich Repeat (LRR) domain","termid":"PBO:0083875"}


id: PBO:0089555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII-coated vesicle component Sfb3","termid":"PBO:0089555"}


id: PBO:0078949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Arg (anticodon TCT) 1-1","termid":"PBO:0078949"}


id: FYPO:0000107
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115410,115411,115639,115640],"is_not":false,"summary":null,"term":"FYPO:0000107"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to latrunculin A. Cells stop growing (and may die) at a concentration of latrunculin A that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_02592":null},"genotype_count":2,"genotypes_by_uniquename":{"atf1delta":{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002683","FYPO:0000003","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to latrunculin A","references_by_uniquename":{"PMID:32915139":null,"PMID:33791858":null},"single_locus_annotated_genes":["SJAG_00266","SJAG_02592"],"single_locus_genotype_uniquenames":["atf1delta","sty1delta"],"synonyms":[{"name":"hypersensitive to latrunculin A","type":"exact"},{"name":"sensitive to LAT-A","type":"exact"},{"name":"sensitive to LatA","type":"exact"},{"name":"sensitive to latrunculin A during mitotic cell cycle","type":"related"},{"name":"sensitive to latrunculin A during vegetative growth","type":"exact"}],"termid":"FYPO:0000107","terms_by_termid":{"FYECO:0000137":null,"FYPO:0000107":null,"FYPO_EXT:0000001":null}}


id: PBO:0061689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin 188","termid":"PBO:0061689"}


id: GO:0007028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cytoplasm. The cytoplasm is all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.","definition_xrefs":["GOC:dph","GOC:curators","GOC:jl","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component organization","termid":"GO:0016043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cytoplasm organization","synonyms":[{"name":"cytoplasm organisation","type":"exact"},{"name":"cytoplasm organization and biogenesis","type":"related"}],"termid":"GO:0007028"}


id: PBO:0004043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L35a (predicted)","termid":"PBO:0004043"}


id: PBO:0051045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy diversity 1-14 (non-functional)","termid":"PBO:0051045"}


id: PBO:0002968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyridoxine biosynthesis protein","termid":"PBO:0002968"}


id: GO:0098603
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: R + Se-Adenosylselenomethionine => CH3-R + Se-Adenosyl-L-selenohomocysteine.","definition_xrefs":["PMID:1711890"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016741","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"selenol Se-methyltransferase activity","secondary_identifiers":["Reactome:R-HSA-2408544"],"termid":"GO:0098603"}


id: PBO:0042483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDH8 antisense RNA 1","termid":"PBO:0042483"}


id: GO:0016919
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of polypeptides, preferably at the first bond of Xaa-Arg-Lys, and less commonly at the first bond of Arg-Arg-Xaa, in which Xaa is not Arg or Lys.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete nardilysin activity (obsolete GO:0016919)","synonyms":[{"name":"N-arginine dibasic convertase activity","type":"related"},{"name":"NRD convertase activity","type":"related"},{"name":"NRD-convertase activity","type":"related"},{"name":"nardilysin activity","type":"exact"}],"termid":"GO:0016919"}


id: GO:0061290
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes that contribute to the progression of the metanephric kidney over time. In this pathway, the activated receptor signals via downstream effectors that result in the inhibition of beta-catenin phosphorylation, thereby preventing degradation of beta-catenin. Stabilized beta-catenin can then accumulate and travel to the nucleus to trigger changes in transcription of target genes.","definition_xrefs":["GOC:mtg_kidney_jan10"],"gene_count":0,"genotype_count":0,"name":"obsolete canonical Wnt signaling pathway involved in metanephric kidney development (obsolete GO:0061290)","synonyms":[{"name":"canonical Wnt receptor signaling pathway involved in metanephric kidney development","type":"exact"},{"name":"canonical Wnt receptor signalling pathway involved in metanephric kidney development","type":"exact"},{"name":"canonical Wnt-activated signaling pathway involved in metanephric kidney development","type":"exact"}],"termid":"GO:0061290"}


id: PBO:0031104
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_microtubule_depolymerizing_drugs","termid":"PBO:0031104"}


id: GO:2000459
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of astrocyte chemotaxis.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of chemotaxis","termid":"GO:0050922"},{"relation_name":"is_a","term_name":"negative regulation of glial cell migration","termid":"GO:1903976"},{"relation_name":"is_a","term_name":"regulation of astrocyte chemotaxis","termid":"GO:2000458"},{"relation_name":"negatively_regulates","term_name":"astrocyte chemotaxis","termid":"GO:0035700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of astrocyte chemotaxis","termid":"GO:2000459"}


id: PBO:0049891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HERC2 pseudogene 10","termid":"PBO:0049891"}


id: PBO:0018191
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Neuromyotonia","termid":"PBO:0018191"}


id: PBO:0083023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Deleted ORF; does not encode a protein; included in the original annotation of Chromosome III but later withdrawn","termid":"PBO:0083023"}


id: GO:0009945
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The establishment, maintenance and elaboration of an axis that initiates at a point and radiates outward from the point.","definition_xrefs":["GOC:go_curators","GOC:dph","GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axis specification","termid":"GO:0009798"},{"relation_name":"part_of","term_name":"radial pattern formation","termid":"GO:0009956"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"radial axis specification","termid":"GO:0009945"}


id: GO:0090483
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: phosphatidylglycerol + phosphatidylethanolamine = cardiolipin + ethanolamine.","definition_xrefs":["PMID:22988102"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidyltransferase activity","termid":"GO:0030572"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016780"],"is_obsolete":false,"name":"phosphatidylglycerol-phosphatidylethanolamine phosphatidyltransferase activity","synonyms":[{"name":"cardiolipin synthase","type":"related"}],"termid":"GO:0090483"}


id: GO:0051142
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of natural killer T cell proliferation.","definition_xrefs":["PMID:9133426","PMID:12154375","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of alpha-beta T cell proliferation","termid":"GO:0046641"},{"relation_name":"is_a","term_name":"positive regulation of NK T cell activation","termid":"GO:0051135"},{"relation_name":"is_a","term_name":"regulation of NK T cell proliferation","termid":"GO:0051140"},{"relation_name":"positively_regulates","term_name":"NK T cell proliferation","termid":"GO:0001866"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"positive regulation of NK T cell proliferation","synonyms":[{"name":"activation of NK T cell proliferation","type":"narrow"},{"name":"positive regulation of NK T lymphocyte proliferation","type":"exact"},{"name":"positive regulation of NK T-cell proliferation","type":"exact"},{"name":"positive regulation of NK T-lymphocyte proliferation","type":"exact"},{"name":"positive regulation of NKT cell proliferation","type":"exact"},{"name":"positive regulation of NT cell proliferation","type":"exact"},{"name":"positive regulation of natural T cell proliferation","type":"exact"},{"name":"positive regulation of natural killer T cell proliferation","type":"exact"},{"name":"stimulation of NK T cell proliferation","type":"narrow"},{"name":"up regulation of NK T cell proliferation","type":"exact"},{"name":"up-regulation of NK T cell proliferation","type":"exact"},{"name":"upregulation of NK T cell proliferation","type":"exact"}],"termid":"GO:0051142"}


id: PR:Q9P7U7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fub2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7U7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein P4G3.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP4G3.03","synonyms":[{"name":"Spom972h-fub2","type":"exact"}],"termid":"PR:Q9P7U7"}


id: GO:0033535
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ajugose, the hexasaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside.","definition_xrefs":["GOC:mah","MetaCyc:CPD-8066"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide metabolic process","termid":"GO:0009311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"ajugose metabolic process","synonyms":[{"name":"ajugose metabolism","type":"exact"}],"termid":"GO:0033535"}


id: PBO:0036024
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K9_acetylation_during_vegetative_growth","termid":"PBO:0036024"}


id: PR:Q10359
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gmh3 gene.","definition_xrefs":["UniProtKB:Q10359","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-1,2-galactosyltransferase gmh3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22E12.06c","synonyms":[{"name":"Spom972h-gmh3","type":"exact"}],"termid":"PR:Q10359"}


id: SO:1000156
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An interchromosomal transposition whereby a copy of the segment between the first two breaks listed is inserted at the third break; the insertion is in cytologically inverted orientation with respect to its flanking segment.","definition_xrefs":["FB:reference_manual"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interchromosomal_transposition","termid":"SO:1000155"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inverted_interchromosomal_transposition","synonyms":[{"name":"(Drosophila)iTp","type":"related"},{"name":"inverted interchromosomal transposition","type":"exact"}],"termid":"SO:1000156"}


id: GO:0110149
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of biomineralization, the formation and deposition of mineral crystals by living organisms.","definition_xrefs":["PMID:22992051"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of biomineralization (obsolete GO:0110149)","synonyms":[{"name":"regulation of biomineral formation","type":"narrow"},{"name":"regulation of biomineralisation","type":"exact"},{"name":"regulation of mineralisation","type":"exact"},{"name":"regulation of mineralization","type":"exact"}],"termid":"GO:0110149"}


id: GO:0030161
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Stops, prevents or reduces the activity of the enzyme calpain, which catalyzes of the preferential cleavage of Tyr-Xaa, Met-Xaa or Arg-Xaa with Leu or Val as the P2 residue.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete calpain inhibitor activity (obsolete GO:0030161)","synonyms":[{"name":"calpain inhibitor activity","type":"exact"}],"termid":"GO:0030161"}


id: GO:0060142
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"is_a","term_name":"regulation of cellular component organization","termid":"GO:0051128"},{"relation_name":"regulates","term_name":"syncytium formation by plasma membrane fusion","termid":"GO:0000768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of syncytium formation by plasma membrane fusion","termid":"GO:0060142"}


id: PBO:0089069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Swr1 complex histone demethylase subunit Msc1","termid":"PBO:0089069"}


id: GO:0000020
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of genetic recombination within the DNA of the genes coding for ribosomal RNA.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of recombination within rDNA repeats (obsolete GO:0000020)","synonyms":[{"name":"negative regulation of recombination within rDNA repeats","type":"exact"}],"termid":"GO:0000020"}


id: PBO:0041208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BZW1 antisense RNA 1","termid":"PBO:0041208"}


id: PBO:0044089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer/testis antigen family 45 member A9","termid":"PBO:0044089"}


id: PBO:0049676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha","termid":"PBO:0049676"}


id: PBO:0072377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS27A pseudogene 3","termid":"PBO:0072377"}


id: GO:0002291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The change in morphology and behavior of a mature or immature T cell resulting from exposure to an antigen for which its T cell receptor is specific bound to an MHC molecule on an antigen presenting cell, leading to the initiation or perpetuation of an immune response.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell activation involved in immune response","termid":"GO:0002286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell","synonyms":[{"name":"T lymphocyte activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell","type":"exact"},{"name":"T-cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell","type":"exact"},{"name":"T-lymphocyte activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell","type":"exact"}],"termid":"GO:0002291"}


id: PBO:0046941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 66 member C","termid":"PBO:0046941"}


id: PBO:0012860
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hsk1 Interacting Molecule","termid":"PBO:0012860"}


id: PBO:0001051
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteome hyperlink","termid":"PBO:0001051"}


id: GO:0052855
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (6S)-6beta-hydroxy-1,4,5,6-tetrahydronicotinamide adenine dinucleotide + ADP = AMP + H+ + NAD(P)H + phosphate.","definition_xrefs":["EC:4.2.1.136","PMID:21994945"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"ADP-dependent NAD(P)H-hydrate dehydratase activity","synonyms":[{"name":"(6S)-beta-6-hydroxy-1,4,5,6-tetrahydronicotinamide-adenine-dinucleotide hydro-lyase (ADP-hydrolysing)","type":"related"},{"name":"(6S)-beta-6-hydroxy-1,4,5,6-tetrahydronicotinamide-adenine-dinucleotide hydro-lyase(ADP-hydrolysing; NADH-forming)","type":"related"},{"name":"ADP-dependent H(4)NAD(P)OH dehydratase activity","type":"exact"},{"name":"ADP-dependent H4NAD(P)OH dehydratase activity","type":"exact"}],"termid":"GO:0052855"}


id: GO:0002913
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of lymphocyte anergy.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of tolerance induction","termid":"GO:0002645"},{"relation_name":"is_a","term_name":"regulation of lymphocyte anergy","termid":"GO:0002911"},{"relation_name":"positively_regulates","term_name":"lymphocyte anergy","termid":"GO:0002249"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of lymphocyte anergy","synonyms":[{"name":"activation of lymphocyte anergy","type":"narrow"},{"name":"stimulation of lymphocyte anergy","type":"narrow"},{"name":"up regulation of lymphocyte anergy","type":"exact"},{"name":"up-regulation of lymphocyte anergy","type":"exact"},{"name":"upregulation of lymphocyte anergy","type":"exact"}],"termid":"GO:0002913"}


id: GO:0061373
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the mammillary axonal complex over time, from its formation to the mature structure. The mammillary axonal complex is formed by the axons from the lateral, medial mammillary and the dorsal premammillary nuclei which share a branching pattern. Every neuron gives off one axonal stem that bifurcates into 2 branches. One of the branches is directed dorsally to the thalamus and another caudally to the midbrain.","definition_xrefs":["PMID:10662642","GOC:yaf","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"mammillary body development","termid":"GO:0021767"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mammillary axonal complex development","termid":"GO:0061373"}


id: PBO:0035734
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_cytoplasmic_microtubule_plus-end_during_mitotic_interphase","termid":"PBO:0035734"}


id: RO:0002371
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"a is attached to b if and only if a and b are discrete objects or object parts, and there are physical connections between a and b such that a force pulling a will move b, or a force pulling b will move a","direct_ancestors":[{"relation_name":"is_a","term_name":"connected_to","termid":"RO:0002170"},{"relation_name":"is_a","term_name":"attached_to_part_of","termid":"RO:0002177"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"attached_to","termid":"RO:0002371"}


id: PBO:0080375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting 4 homolog B","termid":"PBO:0080375"}


id: PBO:0052062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine acetyltransferase 2B","termid":"PBO:0052062"}


id: PBO:0068336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 44","termid":"PBO:0068336"}


id: PBO:0029824
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_curved_vegetative_cell_population_(obsolete_FYPO:0002413)","termid":"PBO:0029824"}


id: PBO:0078897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (CTG) 8-1","termid":"PBO:0078897"}


id: PBO:0002687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pheromone p-factor receptor","termid":"PBO:0002687"}


id: SO:0000883
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A stop codon redefined to be a new amino acid.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"recoded_codon","termid":"SO:0000145"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stop_codon_read_through","synonyms":[{"name":"stop codon read through","type":"exact"},{"name":"stop codon readthrough","type":"related"}],"termid":"SO:0000883"}


id: GO:0018953
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving p-cymene, 1-methyl-4-isopropylbenzene, one of the alkyl-substituted aromatic hydrocarbons found in volatile oils from over 100 plants.","definition_xrefs":["UM-BBD_pathwayID:pcy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoterpene metabolic process","termid":"GO:0043692"},{"relation_name":"is_a","term_name":"toluene-containing compound metabolic process","termid":"GO:0072490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"p-cymene metabolic process","synonyms":[{"name":"p-cymene metabolism","type":"exact"}],"termid":"GO:0018953"}


id: PBO:0005437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATM checkpoint kinase","termid":"PBO:0005437"}


id: PBO:0026918
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_rRNA_modification","termid":"PBO:0026918"}


id: PBO:0035936
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K9_dimethylation_at_centromere_inner_repeat_during_vegetative_growth","termid":"PBO:0035936"}


id: GO:0071809
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate or extent of fever generation via regulation of the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of prostaglandin.","definition_xrefs":["GOC:mah","GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of prostaglandin biosynthetic process","termid":"GO:0031392"},{"relation_name":"is_a","term_name":"regulation of fever generation","termid":"GO:0031620"},{"relation_name":"regulates","term_name":"regulation of fever generation by prostaglandin biosynthetic process","termid":"GO:0100008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"regulation of fever generation by regulation of prostaglandin biosynthesis","termid":"GO:0071809"}


id: GO:0043526
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the occurrence or rate of cell death by apoptosis in the nervous system. It may stop or prevent or reduce the rate of cell death by apoptosis and it is activated by stress to counteract death signals in central nervous systems. Different neuroprotective mechanisms may be activated to combat distinct types of cellular stress, ERK pathway is one of several neuroprotective mechanisms and it is a model system to study neuronal apoptosis, which may contribute to several neurodegenerative diseases and aging-related neuron loss.","definition_xrefs":["MSH:D017209","PMID:11909981","PMID:15905876","GOC:mtg_apoptosis","PMID:10208444"],"gene_count":0,"genotype_count":0,"name":"obsolete neuroprotection (obsolete GO:0043526)","secondary_identifiers":["Wikipedia:Neuroprotection"],"synonyms":[{"name":"neuroprotection","type":"exact"}],"termid":"GO:0043526"}


id: PBO:0034703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clr6 histone deacetylase associated PHD protein Cph2","termid":"PBO:0034703"}


id: PBO:0025462
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate-CoA ligase deficiency","termid":"PBO:0025462"}


id: PBO:0080587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WDR11 divergent transcript","termid":"PBO:0080587"}


id: PBO:0055191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2615","termid":"PBO:0055191"}


id: PBO:0027835
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_septum_disassembly","termid":"PBO:0027835"}


id: PBO:0040252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy related 9A","termid":"PBO:0040252"}


id: GO:0030785
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + [ribulose-1,5-bisphosphate carboxylase]-lysine = S-adenosyl-L-homocysteine + [ribulose-1,5-bisphosphate carboxylase]-N6-methyl-L-lysine.","definition_xrefs":["EC:2.1.1.127"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016741","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity","secondary_identifiers":["RHEA:50996","MetaCyc:2.1.1.127-RXN"],"synonyms":[{"name":"RuBisCO LSMT activity","type":"related"},{"name":"RuBisCO methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:3-phospho-D-glycerate-carboxy-lyase (dimerizing)-lysine 6-N-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:3-phospho-D-glycerate-carboxy-lyase (dimerizing)-lysine N6-methyltransferase activity","type":"related"},{"name":"ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit epsilonN-methyltransferase activity","type":"related"},{"name":"ribulose-bisphosphate carboxylase-lysine N-methyltransferase activity","type":"related"},{"name":"ribulose-bisphosphate-carboxylase/oxygenase N-methyltransferase activity","type":"related"}],"termid":"GO:0030785"}


id: MOD:01686
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces two alpha amino hydrogen atoms with two methyl group.","definition_xrefs":["Unimod:36#N-term","OMSSA:38"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dimethylated residue","termid":"MOD:00429"},{"relation_name":"is_a","term_name":"alpha-amino methylated residue","termid":"MOD:01460"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"alpha-amino dimethylated residue","synonyms":[{"name":"Dimethyl","type":"related"},{"name":"N2Me2Res","type":"exact"},{"name":"di-Methylation","type":"related"},{"name":"ntermpepdimethyl","type":"exact"}],"termid":"MOD:01686"}


id: PR:Q9UUF0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peroxisome biogenesis factor 10 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR23350:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxisome biogenesis factor 10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17A3.10","secondary_identifiers":["UniProtKB:Q9UUF0"],"synonyms":[{"name":"Spom972h-PEX10","type":"exact"},{"name":"peroxin-10 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"peroxisomal biogenesis factor 10 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"peroxisome assembly protein 10 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"pi036","type":"related"}],"termid":"PR:Q9UUF0"}


id: GO:1900996
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of benzene.","definition_xrefs":["UniPathway:UPA00272","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benzene metabolic process","termid":"GO:0018910"},{"relation_name":"is_a","term_name":"hydrocarbon catabolic process","termid":"GO:0120253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"benzene catabolic process","synonyms":[{"name":"benzene breakdown","type":"exact"},{"name":"benzene catabolism","type":"exact"},{"name":"benzene degradation","type":"exact"}],"termid":"GO:1900996"}


id: PBO:0048793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit alpha L","termid":"PBO:0048793"}


id: PBO:0001967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coenzyme A diphosphatase (predicted)","termid":"PBO:0001967"}


id: PBO:0065992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAI1 antisense RNA 1","termid":"PBO:0065992"}


id: PBO:0028230
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_trehalose_level_during_cellular_response_to_oxidative_stress","termid":"PBO:0028230"}


id: FYPO:0006363
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the spindle forms with microtubules emanating from only one pole during the first meiotic nuclear division.","definition_xrefs":["PMID:24954111","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal spindle morphology during meiosis I","termid":"FYPO:0005652"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002399","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000054","FYPO:0000120"],"is_obsolete":false,"name":"monopolar spindle during meiosis I","synonyms":[{"name":"V-shaped spindle during meiosis I","type":"related"},{"name":"fan-shaped spindle during meiosis I","type":"exact"},{"name":"monopolar spindle during first meiotic nuclear division","type":"exact"}],"termid":"FYPO:0006363"}


id: GO:0007000
data:
  {"annotated_genes":["SJAG_03844","SJAG_01579","SJAG_03982","SJAG_00934","SJAG_01075","SJAG_00883","SJAG_02778"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100196,109397,103330,88174,104260,108205,110516],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000183"}]},"cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleolus.","definition_xrefs":["GOC:dph","GOC:jid","GOC:mah","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus organization","termid":"GO:0006997"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00883":null,"SJAG_00934":null,"SJAG_01075":null,"SJAG_01579":null,"SJAG_02778":null,"SJAG_03844":null,"SJAG_03982":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nucleolus organization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"nucleolus organisation","type":"exact"},{"name":"nucleolus organization and biogenesis","type":"related"}],"termid":"GO:0007000","terms_by_termid":{"GO:0000183":null}}


id: PBO:0040882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bone morphogenetic protein 6 pseudogene 1","termid":"PBO:0040882"}


id: GO:1905899
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of smooth muscle tissue development.","definition_xrefs":["GO_REF:0000058","GOC:bhm","GOC:TermGenie","PMID:14709716"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle tissue development","termid":"GO:1901861"},{"relation_name":"regulates","term_name":"smooth muscle tissue development","termid":"GO:0048745"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of smooth muscle tissue development","termid":"GO:1905899"}


id: GO:0097354
data:
  {"annotated_genes":["SJAG_02583","SJAG_03810"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[60997,67104],"is_not":false,"summary":null,"term":"GO:0097354"}]},"cv_name":"biological_process","definition":"The covalent attachment of a prenyl group to a molecule; geranyl, farnesyl, or geranylgeranyl groups may be added.","definition_xrefs":["PMID:22660767","PMID:22642693","PMID:22123822","PMID:18029206","PMID:21351751","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular metabolic process","termid":"GO:0044237"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02583":null,"SJAG_03810":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"prenylation","references_by_uniquename":{"GO_REF:0000104":null},"termid":"GO:0097354","terms_by_termid":{"GO:0097354":null}}


id: PBO:0055697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LLLL and CFNLAS motif containing 1","termid":"PBO:0055697"}


id: PBO:0000206
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deletion mutant expression profiling","termid":"PBO:0000206"}


id: PBO:0058748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6872","termid":"PBO:0058748"}


id: PBO:0003042
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.5.4.2","termid":"PBO:0003042"}


id: GO:0016161
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains.","definition_xrefs":["PMID:18390594"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amylase activity","termid":"GO:0016160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0016798","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"beta-amylase activity","secondary_identifiers":["EC:3.2.1.2","MetaCyc:RXN-1827","MetaCyc:RXN-12279"],"synonyms":[{"name":"4-alpha-D-glucan maltohydrolase activity","type":"related"},{"name":"beta amylase activity","type":"related"},{"name":"glycogenase activity","type":"broad"},{"name":"saccharogen amylase activity","type":"related"}],"termid":"GO:0016161"}


id: PBO:0071332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L27 pseudogene 9","termid":"PBO:0071332"}


id: PBO:0043776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxypeptidase A2","termid":"PBO:0043776"}


id: GO:0046449
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving creatinine, 2-amino-1,5-dihydro-1-methyl-4H-imidazol-4-one, an end product of creatine metabolism and a normal constituent of urine.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lactam metabolic process","termid":"GO:0072338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"creatinine metabolic process","synonyms":[{"name":"creatinine metabolism","type":"exact"}],"termid":"GO:0046449"}


id: FYPO:0001043
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A biological process phenotype in which the observed mating efficiency, as determined by counting zygotes, asci, and sometimes spores, is higher than normal.","definition_xrefs":["PomBase:mah","PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population phenotype","termid":"FYPO:0000003"},{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"increased mating efficiency","synonyms":[{"name":"mating efficiency: increased","type":"related"}],"termid":"FYPO:0001043"}


id: MOD:01015
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that inserts or replaces a residue with an isovaline.","definition_xrefs":["DeltaMass:110"],"direct_ancestors":[{"relation_name":"is_a","term_name":"unnatural residue","termid":"MOD:00850"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isovaline residue (Iva)","synonyms":[{"name":"2-amino-2-methylbutanoic acid","type":"exact"},{"name":"Isovalyl (-I-,-Iva-)","type":"exact"},{"name":"Iva","type":"exact"}],"termid":"MOD:01015"}


id: SO:0000623
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region that can be transcribed into a small nuclear RNA (snRNA).","direct_ancestors":[{"relation_name":"is_a","term_name":"non_protein_coding","termid":"SO:0000011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snRNA_encoding","synonyms":[{"name":"snRNA encoding","type":"exact"}],"termid":"SO:0000623"}


id: PBO:0001431
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Helix-Extension-Helix domain protein","termid":"PBO:0001431"}


id: PBO:0063876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class F pseudogene 2","termid":"PBO:0063876"}


id: PBO:0073197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selectin P ligand","termid":"PBO:0073197"}


id: SO:0001479
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An enhancer trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when the expression from a basic minimal promoter is enhanced by genomic enhancer elements. Enhancer traps contain promoter elements and are not usually mutagenic.","definition_xrefs":["ZFIN:dh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"engineered_plasmid","termid":"SO:0000637"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enhancer_trap_construct","synonyms":[{"name":"enhancer trap construct","type":"exact"}],"termid":"SO:0001479"}


id: GO:0003755
data:
  {"annotated_genes":["SJAG_01005","SJAG_02308","SJAG_01270","SJAG_03601","SJAG_00950","SJAG_00078","SJAG_03238","SJAG_01714","SJAG_04155","SJAG_02620","SJAG_04352","SJAG_03905","SJAG_02551","SJAG_00470","SJAG_02413","SJAG_01246","SJAG_00602"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[57542,76791,86086,88082,88860,91425,93971,94554,99015,100579,100764,101474,103739,108522,109758,111389,113393],"is_not":false,"summary":null,"term":"GO:0003755"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).","definition_xrefs":["EC:5.2.1.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cis-trans isomerase activity","termid":"GO:0016859"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00078":null,"SJAG_00470":null,"SJAG_00602":null,"SJAG_00950":null,"SJAG_01005":null,"SJAG_01246":null,"SJAG_01270":null,"SJAG_01714":null,"SJAG_02308":null,"SJAG_02413":null,"SJAG_02551":null,"SJAG_02620":null,"SJAG_03238":null,"SJAG_03601":null,"SJAG_03905":null,"SJAG_04155":null,"SJAG_04352":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674","GO:0140096"],"is_obsolete":false,"name":"peptidyl-prolyl cis-trans isomerase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PEPTIDYLPROLYL-ISOMERASE-RXN","GO:0004752","GO:0042028","Reactome:R-HSA-9626816","Reactome:R-HSA-2022073","RHEA:16237"],"synonyms":[{"name":"FK506-sensitive peptidyl-prolyl cis-trans isomerase","type":"narrow"},{"name":"PPIase activity","type":"related"},{"name":"cis-trans proline isomerase activity","type":"exact"},{"name":"cyclophilin activity","type":"related"},{"name":"cyclophilin-type peptidyl-prolyl cis-trans isomerase activity","type":"narrow"},{"name":"immunophilin","type":"related"},{"name":"juglone-sensitive cis-trans proline isomerase activity","type":"narrow"},{"name":"juglone-sensitive peptidyl-prolyl cis-trans isomerase activity","type":"narrow"},{"name":"parvulin","type":"related"},{"name":"peptide bond isomerase activity","type":"related"},{"name":"peptidyl-prolyl isomerase B reaction","type":"related"},{"name":"peptidylproline cis-trans-isomerase activity","type":"related"},{"name":"peptidylprolyl cis-trans isomerase activity","type":"related"},{"name":"peptidylprolyl isomerase activity","type":"related"},{"name":"rotamase activity","type":"related"}],"termid":"GO:0003755","terms_by_termid":{"GO:0003755":null}}


id: PBO:0000089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S. pombe specific DUF999 family protein 3","termid":"PBO:0000089"}


id: PBO:0070213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 143 pseudogene","termid":"PBO:0070213"}


id: PBO:0073337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family A member 13, pseudogene","termid":"PBO:0073337"}


id: PBO:0079921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase","termid":"PBO:0079921"}


id: PBO:0070346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY4 pseudogene 19","termid":"PBO:0070346"}


id: GO:1990064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regionalization process that gives rise to the patterning of the ground tissue.","definition_xrefs":["PMID:23444357"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regionalization","termid":"GO:0003002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ground tissue pattern formation","synonyms":[{"name":"ground tissue patterning","type":"exact"}],"termid":"GO:1990064"}


id: GO:0043294
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex, found in the mitochondria, that in yeast consists of a large and a small subunit. Possesses glutamate synthase (NADH) activity.","definition_xrefs":["GOC:jl","PMID:7047525"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate synthase complex (NADH)","termid":"GO:0031027"},{"relation_name":"is_a","term_name":"mitochondrial protein-containing complex","termid":"GO:0098798"},{"relation_name":"part_of","term_name":"mitochondrial matrix","termid":"GO:0005759"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005739"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005739","GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"mitochondrial glutamate synthase complex (NADH)","termid":"GO:0043294"}


id: GO:0050867
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of activation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"regulation of cell activation","termid":"GO:0050865"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"positively_regulates","term_name":"cell activation","termid":"GO:0001775"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell activation","synonyms":[{"name":"activation of cell activation","type":"narrow"},{"name":"stimulation of cell activation","type":"narrow"},{"name":"up regulation of cell activation","type":"exact"},{"name":"up-regulation of cell activation","type":"exact"},{"name":"upregulation of cell activation","type":"exact"}],"termid":"GO:0050867"}


id: PBO:0043962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crystallin gamma G, pseudogene","termid":"PBO:0043962"}


id: PBO:0044749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 28","termid":"PBO:0044749"}


id: PBO:0029749
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cytosolic_calcium_level","termid":"PBO:0029749"}


id: PBO:0060545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NAV2 antisense RNA 5","termid":"PBO:0060545"}


id: GO:0010259
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An aging process that has as participant a whole multicellular organism. Multicellular organism aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Multicellular organisms aging includes processes like cellular senescence and organ senescence, but is more inclusive. May precede death (GO:0016265) of an organism and may succeed developmental maturation (GO:0021700).","definition_xrefs":["GOC:PO_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete multicellular organism aging (obsolete GO:0010259)","termid":"GO:0010259"}


id: PBO:0045533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deltex E3 ubiquitin ligase 3L","termid":"PBO:0045533"}


id: GO:0103071
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: a 2-hydroxy-3-methyl-branched 2,3,4-saturated fatty acyl-CoA = formyl-CoA + a 2-methyl branched 2,3,4-saturated fatty aldehyde.","definition_xrefs":["EC:4.1.-.-","GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-hydroxy-3-methyl-branched 2,3,4-saturated fatty acyl-CoA lyase activity (obsolete GO:0103071)","termid":"GO:0103071"}


id: PBO:0065019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxiredoxin 2 pseudogene 3","termid":"PBO:0065019"}


id: GO:0002723
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of B cell cytokine production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of B cell mediated immunity","termid":"GO:0002714"},{"relation_name":"is_a","term_name":"positive regulation of cytokine production involved in immune response","termid":"GO:0002720"},{"relation_name":"is_a","term_name":"regulation of B cell cytokine production","termid":"GO:0002721"},{"relation_name":"positively_regulates","term_name":"B cell cytokine production","termid":"GO:0002368"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of B cell cytokine production","synonyms":[{"name":"activation of B cell cytokine production","type":"narrow"},{"name":"positive regulation of B lymphocyte cytokine production","type":"exact"},{"name":"positive regulation of B-cell cytokine production","type":"exact"},{"name":"positive regulation of B-lymphocyte cytokine production","type":"exact"},{"name":"stimulation of B cell cytokine production","type":"narrow"},{"name":"up regulation of B cell cytokine production","type":"exact"},{"name":"up-regulation of B cell cytokine production","type":"exact"},{"name":"upregulation of B cell cytokine production","type":"exact"}],"termid":"GO:0002723"}


id: PBO:0063354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"procollagen C-endopeptidase enhancer 2","termid":"PBO:0063354"}


id: GO:0034969
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of a histone by addition of a methyl group to an arginine residue.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete histone arginine methylation (obsolete GO:0034969)","termid":"GO:0034969"}


id: GO:0043534
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of an endothelial cell into the extracellular matrix in order to form new blood vessels during angiogenesis.","definition_xrefs":["PMID:11166264"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endothelial cell migration","termid":"GO:0043542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"blood vessel endothelial cell migration","termid":"GO:0043534"}


id: PBO:0076283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SYF2 pre-mRNA splicing factor","termid":"PBO:0076283"}


id: PBO:0064327
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PLS1 antisense RNA 1","termid":"PBO:0064327"}


id: FYPO:0000630
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which biofilm formation is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal biofilm formation","termid":"FYPO:0000630"}


id: GO:0090398
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cell aging process stimulated in response to cellular stress, whereby normal cells lose the ability to divide through irreversible cell cycle arrest.","definition_xrefs":["GOC:BHF","PMID:28682291"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular metabolic process","termid":"GO:0044237"},{"relation_name":"part_of","term_name":"cellular response to stress","termid":"GO:0033554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular senescence","termid":"GO:0090398"}


id: GO:0007506
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the gonadal mesoderm over time, from its formation to the mature structure. The gonadal mesoderm is the middle layer of the three primary germ layers of the embryo which will go on to form the gonads of the organism.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"mesoderm development","termid":"GO:0007498"},{"relation_name":"is_a","term_name":"mesenchyme development","termid":"GO:0060485"},{"relation_name":"part_of","term_name":"gonad development","termid":"GO:0008406"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"gonadal mesoderm development","termid":"GO:0007506"}


id: PBO:0087119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RING-finger peroxin and E3 ubiquitin ligase; peroxisomal membrane protein with a C-terminal zinc-binding RING domain, forms translocation subcomplex with Pex10p and Pex12p which functions in peroxisomal matrix protein import","termid":"PBO:0087119"}


id: PATO:0015004
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A increase in the ability of a process to produce its output.","definition_xrefs":["PATOC:PortlandMeetingFeb2015"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"increased process quality","termid":"PATO:0002304"},{"relation_name":"is_a","term_name":"process efficacy","termid":"PATO:0015002"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased efficacy","termid":"PATO:0015004"}


id: GO:0005105
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 1 fibroblast growth factor receptor (FGFR1).","definition_xrefs":["GOC:ceb","GOC:fb_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblast growth factor receptor binding","termid":"GO:0005104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"type 1 fibroblast growth factor receptor binding","synonyms":[{"name":"FGFR1 binding","type":"broad"},{"name":"FGFR1 ligand","type":"narrow"},{"name":"breathless binding","type":"narrow"},{"name":"breathless ligand","type":"narrow"},{"name":"type 1 fibroblast growth factor receptor ligand","type":"narrow"}],"termid":"GO:0005105"}


id: PBO:0026830
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_Lys63-specific_deubiquitinase_activity","termid":"PBO:0026830"}


id: PBO:0083681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endosomal Rab family GTPase; required for endocytic transport and sorting of vacuolar hydrolases; required for endosomal localization of the CORVET complex; required with YPT52 for MVB biogenesis and sorting; involved in autophagy and ionic stress tolerance; geranylgeranylation required for membrane association; protein abundance increases in response to DNA replication stress; mammalian Rab5 homolog; VPS21 has a paralog, YPT53, that arose from the whole genome duplication","termid":"PBO:0083681"}


id: PR:Q92375
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A thioredoxin reductase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04025"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin reductase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3F6.03","secondary_identifiers":["UniProtKB:Q92375"],"synonyms":[{"name":"Spom972h-trxB","type":"exact"},{"name":"caffeine resistance protein 4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q92375"}


id: FYPO:0003707
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing valinomycin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0002060","FYPO:0002057","FYPO:0002058","FYPO:0000139","FYPO:0000257","FYPO:0000003"],"is_obsolete":false,"name":"normal growth on valinomycin","synonyms":[{"name":"normal cell population growth in presence of valinomycin","type":"exact"},{"name":"normal cell population growth on valinomycin","type":"exact"},{"name":"normal cellular response to valinomycin","type":"related"},{"name":"normal vegetative cell population growth on valinomycin","type":"exact"}],"termid":"FYPO:0003707"}


id: GO:0106273
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of proteins from the cystosol to the endoplasmic reticulum-Golgi intermediate compartment (ERGIC).","definition_xrefs":["PMID:32272059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein transport","termid":"GO:0015031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"cytosol to ERGIC protein transport","termid":"GO:0106273"}


id: FYPO:0001601
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a specific substance measured in the vacuole differs from normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell during vegetative growth","termid":"FYPO:0001323"},{"relation_name":"is_a","term_name":"abnormal vacuole","termid":"FYPO:0002794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"altered level of substance in vacuole","synonyms":[{"name":"abnormal level of substance in vacuole","type":"exact"},{"name":"abnormal level of substance in vacuole during vegetative growth","type":"exact"},{"name":"abnormal vacuolar level of substance","type":"exact"},{"name":"altered level of substance in vacuole during mitotic cell cycle","type":"related"},{"name":"altered vacuolar level of substance","type":"exact"}],"termid":"FYPO:0001601"}


id: PBO:0003088
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"expressed during S phase","termid":"PBO:0003088"}


id: GO:0099071
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A microtubule bundle that undergoes changes in length, and in which microtubule sliding takes place.","definition_xrefs":["PMID:26124291","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule bundle","termid":"GO:0097427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"dynamic microtubule bundle","termid":"GO:0099071"}


id: GO:0035590
data:
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id: GO:1902494
data:
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id: PBO:0034202
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-results_in_organization_of","termid":"PBO:0034202"}


id: PR:O43029
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An N-methyl-L-tryptophan oxidase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02514"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-pipecolate oxidase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC354.15","secondary_identifiers":["UniProtKB:O43029"],"synonyms":[{"name":"L-pipecolic acid oxidase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-solA","type":"exact"}],"termid":"PR:O43029"}


id: GO:0046013
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of resting T cell proliferation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T cell proliferation","termid":"GO:0042129"},{"relation_name":"regulates","term_name":"T cell homeostatic proliferation","termid":"GO:0001777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of T cell homeostatic proliferation","synonyms":[{"name":"regulation of T lymphocyte homeostatic proliferation","type":"exact"},{"name":"regulation of T-cell homeostatic proliferation","type":"exact"},{"name":"regulation of T-lymphocyte homeostatic proliferation","type":"exact"},{"name":"regulation of resting T cell proliferation","type":"exact"}],"termid":"GO:0046013"}


id: GO:0090465
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  {"annotated_genes":["SJAG_01471"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92722],"is_not":false,"summary":null,"term":"GO:0090465"}]},"cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of arginine within a cell.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular amino acid homeostasis","termid":"GO:0080144"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01471":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intracellular arginine homeostasis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"arginine homeostasis","type":"exact"},{"name":"cellular arginine homeostasis","type":"exact"}],"termid":"GO:0090465","terms_by_termid":{"GO:0090465":null}}


id: GO:0010774
data:
  {"annotated_genes":["SJAG_03751","SJAG_02267","SJAG_04950"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84617,88972,96647],"is_not":false,"summary":null,"term":"GO:0010774"}]},"cv_name":"biological_process","definition":"The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate resulting in meiotic recombination. Meiotic recombination is the cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic strand invasion","termid":"GO:0000708"},{"relation_name":"part_of","term_name":"reciprocal meiotic recombination","termid":"GO:0007131"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02267":null,"SJAG_03751":null,"SJAG_04950":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006310"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0140013","GO:0008150","GO:0006310","GO:0006259","GO:0007049"],"is_obsolete":false,"name":"meiotic strand invasion involved in reciprocal meiotic recombination","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010774","terms_by_termid":{"GO:0010774":null}}


id: GO:0010291
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a carotene + a reduced electron acceptor + O2 = C3-hydroxylated carotene + an oxidized electron acceptor + H2O. This is a general reaction to represent the C3 hydroxylation of the beta ring of a carotene.","definition_xrefs":["MetaCyc:MONOMER-12386","PMID:16492736"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"carotene beta-ring hydroxylase activity","secondary_identifiers":["GO:0042411"],"synonyms":[{"name":"beta-carotene hydroxylase activity","type":"narrow"}],"termid":"GO:0010291"}


id: PBO:0089081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation machinery associated protein ortholog Tma22","termid":"PBO:0089081"}


id: PBO:0033812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic fizzy-related APC coactivator Fzr2 (predicted)","termid":"PBO:0033812"}


id: PBO:0000597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"export adaptor Nmd3 (predicted)","termid":"PBO:0000597"}


id: GO:0050831
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A set of reactions, specific to males, that are triggered in response to the presence of a bacterium that act to protect the cell or organism.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"defense response to bacterium","termid":"GO:0042742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"male-specific defense response to bacterium","synonyms":[{"name":"male-specific antibacterial peptide activity","type":"related"},{"name":"male-specific defence response to bacteria","type":"exact"},{"name":"male-specific defence response to bacterium","type":"exact"},{"name":"male-specific defense response to bacteria","type":"exact"}],"termid":"GO:0050831"}


id: PBO:0042525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 2 associated protein 2 pseudogene 3","termid":"PBO:0042525"}


id: PBO:0072910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SCAN domain containing 3","termid":"PBO:0072910"}


id: PBO:0076842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TERF2 interacting protein","termid":"PBO:0076842"}


id: PBO:0033797
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-progressively_decreasing_vegetative_cell_population_growth_rate_followed_by_return_to_normal_growth_rate","termid":"PBO:0033797"}


id: PBO:0087115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosome-associated protein; required for global translational elongation after recovery from stationary phase due to starvation; crosslinks to the 25S rRNA near the A site that overlaps the GTPase activation center, and to tRNAs; possible role in the iron deprivation response; localizes to the nucleus and cytoplasm, with enhanced nuclear localization under iron-replete conditions; null mutant exhibits slow growth during iron deprivation; orthologous to human CCDC124","termid":"PBO:0087115"}


id: PBO:0081634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 562","termid":"PBO:0081634"}


id: GO:0033189
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin A stimulus.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to vitamin","termid":"GO:0033273"},{"relation_name":"is_a","term_name":"response to lipid","termid":"GO:0033993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to vitamin A","synonyms":[{"name":"response to retinol","type":"narrow"}],"termid":"GO:0033189"}


id: PBO:0038883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylate cyclase 9","termid":"PBO:0038883"}


id: PBO:0003501
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.3.2.6","termid":"PBO:0003501"}


id: GO:0052451
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the inflammatory response of a symbiont organism; the inflammatory response is the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by organism of symbiont inflammatory response (obsolete GO:0052451)","synonyms":[{"name":"modulation by organism of symbiont inflammatory response","type":"exact"}],"termid":"GO:0052451"}


id: PBO:0069499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 766, pseudogene","termid":"PBO:0069499"}


id: PBO:0048717
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GLRX5 pseudogene 3","termid":"PBO:0048717"}


id: GO:0033771
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a flavanone + O2 + reduced [NADPH--hemoprotein reductase] = a 2-hydroxyflavanone + H+ + H2O + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["EC:1.14.14.162","RHEA:57584"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"flavanone 2-hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-19645","KEGG_REACTION:R07198"],"synonyms":[{"name":"licodione synthase activity","type":"narrow"}],"termid":"GO:0033771"}


id: GO:0070209
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A protein complex that is part of the chromatin remodeling machinery; the acronym stands for ASsembly of Tel, Rvb and Atm-like kinase. In Saccharomyces cerevisiae this complex includes Rvb1p, Rvb2p, Tra1p, Tel2p, Asa1p, Ttilp and Tti2p.","definition_xrefs":["GOC:rb","PMID:19040720","PMID:22505622"],"gene_count":0,"genotype_count":0,"name":"obsolete ASTRA complex (obsolete GO:0070209)","termid":"GO:0070209"}


id: PBO:0066211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 22 pseudogene 4","termid":"PBO:0066211"}


id: GO:0060169
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of G protein-coupled receptor signaling pathway","termid":"GO:0045744"},{"relation_name":"is_a","term_name":"regulation of adenosine receptor signaling pathway","termid":"GO:0060167"},{"relation_name":"negatively_regulates","term_name":"G protein-coupled adenosine receptor signaling pathway","termid":"GO:0001973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of adenosine receptor signaling pathway","synonyms":[{"name":"negative regulation of adenosine receptor signalling pathway","type":"exact"}],"termid":"GO:0060169"}


id: PBO:0011990
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orthologous to S. cerevisiae YKR022C","termid":"PBO:0011990"}


id: PBO:0042144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine ligand 4","termid":"PBO:0042144"}


id: GO:0015897
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organomercurial compound is transported across a membrane. Organomercurial substances are any organic compound containing a mercury atom.","definition_xrefs":["PMID:18793329","GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete organomercurial transport (obsolete GO:0015897)","termid":"GO:0015897"}


id: GO:0009225
data:
  {"annotated_genes":["SJAG_02648","SJAG_02951","SJAG_02950","SJAG_03818","SJAG_00519","SJAG_04728","SJAG_02954","SJAG_03188","SJAG_00978","SJAG_01089","SJAG_02783","SJAG_03723","SJAG_00890","SJAG_01443","SJAG_01209","SJAG_01784","SJAG_02178"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85324,112178,99187,104483],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009298"},{"annotations":[109814,109821,105693,109832,109822],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052574"},{"annotations":[104999,110534,114557],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006011"},{"annotations":[98789,57570,98890,84668,84327],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006048"}]},"cv_name":"biological_process","definition":"The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleobase-containing small molecule metabolic process","termid":"GO:0055086"},{"relation_name":"is_a","term_name":"carbohydrate derivative metabolic process","termid":"GO:1901135"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00519":null,"SJAG_00890":null,"SJAG_00978":null,"SJAG_01089":null,"SJAG_01209":null,"SJAG_01443":null,"SJAG_01784":null,"SJAG_02178":null,"SJAG_02648":null,"SJAG_02783":null,"SJAG_02950":null,"SJAG_02951":null,"SJAG_02954":null,"SJAG_03188":null,"SJAG_03723":null,"SJAG_03818":null,"SJAG_04728":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"nucleotide-sugar metabolic process","references_by_uniquename":{"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"nucleotide-sugar metabolism","type":"exact"}],"termid":"GO:0009225","terms_by_termid":{"GO:0006011":null,"GO:0006048":null,"GO:0009298":null,"GO:0052574":null}}


id: PBO:0069924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1216, pseudogene","termid":"PBO:0069924"}


id: PBO:0049633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 36","termid":"PBO:0049633"}


id: PBO:0087495
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of E3 ubiquitin ligase complex involved in replication repair; stabilizes protein components of replication fork, such as fork-pausing complex and leading strand polymerase, preventing fork collapse and promoting efficient recovery during replication stress; Rtt101p-Mms22p ligase associates with replisome complex during S phase via Ctf4p; required for accurate meiotic chromosome segregation","termid":"PBO:0087495"}


id: GO:1905056
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A calcium-transporting P-type ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration.","definition_xrefs":["GO_REF:0000061","PMID:22972962","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"P-type calcium transporter activity","termid":"GO:0005388"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"P-type calcium transporter activity involved in regulation of presynaptic cytosolic calcium ion concentration","synonyms":[{"name":"ATP phosphohydrolase (Ca2+-transporting) involved in regulation of presynaptic cytosolic calcium ion concentration","type":"exact"},{"name":"ATPase-coupled calcium ion transmembrane transporter activity involved in regulation of presynaptic cytosolic calcium levels","type":"exact"},{"name":"Ca(2+)-transporting ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration","type":"exact"},{"name":"Ca2+-pumping ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration","type":"exact"},{"name":"Ca2+-transporting ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration","type":"exact"},{"name":"calcium ABC transporter involved in regulation of presynaptic cytosolic calcium ion concentration","type":"narrow"},{"name":"calcium efflux ATPase involved in regulation of presynaptic cytosolic calcium ion concentration","type":"narrow"},{"name":"calcium transporting ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration","type":"exact"},{"name":"calcium-translocating P-type ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration","type":"narrow"},{"name":"calcium-transporting ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration","type":"exact"},{"name":"plasma membrane Ca-ATPase involved in regulation of presynaptic cytosolic calcium ion concentration","type":"narrow"}],"termid":"GO:1905056"}


id: FYPO:0001593
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of valine into the cell occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased amino acid import during vegetative growth","termid":"FYPO:0001360"},{"relation_name":"is_a","term_name":"abnormal valine import","termid":"FYPO:0001658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"decreased valine import","synonyms":[{"name":"decreased L-valine import","type":"exact"},{"name":"decreased L-valine import across plasma membrane","type":"exact"},{"name":"decreased valine import during mitotic cell cycle","type":"related"},{"name":"decreased valine import during vegetative growth","type":"exact"},{"name":"decreased valine import into cell","type":"exact"},{"name":"decreased valine uptake","type":"exact"},{"name":"reduced valine import","type":"exact"}],"termid":"FYPO:0001593"}


id: PATO:0001175
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001175 urine composition (obsolete PATO:0001175)","termid":"PATO:0001175"}


id: PBO:0079132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSKU antisense RNA 1","termid":"PBO:0079132"}


id: PBO:0040318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase F1 subunit gamma","termid":"PBO:0040318"}


id: PBO:0072624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"radial spoke head 10 homolog B2","termid":"PBO:0072624"}


id: GO:0043033
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex whose composition varies amongst species; in rice it probably exists in a homo-tetramer to homo-hexamer form and in Gram-negative bacteria as a dimer. Functions in the hydrolysis of alpha-(1,6)-D-glucosidic branch linkages.","definition_xrefs":["PMID:10333591","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"isoamylase complex","synonyms":[{"name":"debranching enzyme complex","type":"broad"}],"termid":"GO:0043033"}


id: GO:0072762
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbendazim stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"cellular response to organonitrogen compound","termid":"GO:0071417"},{"relation_name":"is_a","term_name":"response to carbendazim","termid":"GO:1901597"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to carbendazim","termid":"GO:0072762"}


id: PBO:0071805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2","termid":"PBO:0071805"}


id: PATO:0001637
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of single process inhering in a bearer by virtue of whether the bearer is essential or indispensable.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"process quality","termid":"PATO:0001236"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"necessity of occurrent","termid":"PATO:0001637"}


id: PBO:0030215
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_alpha,alpha-trehalase_activity_increase_during_cellular_response_to_oxidative_stress","termid":"PBO:0030215"}


id: PBO:0045308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA methyltransferase 3A pseudogene 1","termid":"PBO:0045308"}


id: GO:0036378
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Conversion of vitamin D3 from its largely inactive form (calciol, also called cholecalciferol) into a hormonally active form (calcitriol). Conversion requires 25-hydroxylation of calciol in the liver to form calcidiol, and subsequent 1,alpha-hydroxylation of calcidiol in the kidney to form calcitriol.","definition_xrefs":["GOC:BHF","PMID:17426122","PMID:20511049","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin D biosynthetic process","termid":"GO:0042368"},{"relation_name":"is_a","term_name":"polyol biosynthetic process","termid":"GO:0046173"},{"relation_name":"is_a","term_name":"vitamin D3 metabolic process","termid":"GO:0070640"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629","GO:0006766"],"is_obsolete":false,"name":"calcitriol biosynthetic process from calciol","synonyms":[{"name":"1alpha,25(OH)2D3 biosynthesis","type":"broad"},{"name":"1alpha,25-dihydroxycholecalciferol biosynthesis","type":"broad"},{"name":"1alpha,25-dihydroxyvitamin D3 biosynthesis","type":"broad"},{"name":"calcitriol biosynthesis from calciol","type":"exact"},{"name":"vitamin D3 activation","type":"exact"}],"termid":"GO:0036378"}


id: PBO:0026993
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_chloroacetaldehyde","termid":"PBO:0026993"}


id: GO:0110114
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate, or extent of lipid transporter activity.","definition_xrefs":["GOC:BHF_miRNA","PMID:27365390","GOC:BHF","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of lipid transport","termid":"GO:0032369"},{"relation_name":"is_a","term_name":"negative regulation of transporter activity","termid":"GO:0032410"},{"relation_name":"is_a","term_name":"regulation of lipid transporter activity","termid":"GO:0110112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of lipid transporter activity","termid":"GO:0110114"}


id: GO:0033825
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of the non-reducing terminal alpha-D-glucose residue from a 1,4-alpha-D-glucan to the 4-position of an alpha-D-glucan, thus bringing about the hydrolysis of oligosaccharides.","definition_xrefs":["EC:2.4.1.161"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosyltransferase activity","termid":"GO:0046527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"oligosaccharide 4-alpha-D-glucosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.161-RXN"],"synonyms":[{"name":"1,4-alpha-D-glucan:1,4-alpha-D-glucan 4-alpha-D-glucosyltransferase activity","type":"related"},{"name":"1,4-alpha-glucan:1,4-alpha-glucan 4-alpha-glucosyltransferase activity","type":"related"},{"name":"amylase III activity","type":"related"}],"termid":"GO:0033825"}


id: PBO:0036540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DENN domain Rab GDP-GTP exchange factor, unknown biological role (predicted)","termid":"PBO:0036540"}


id: PBO:0089387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MS ion channel protein 2","termid":"PBO:0089387"}


id: PBO:0047733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"formin binding protein 1 pseudogene 2","termid":"PBO:0047733"}


id: PBO:0091905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi alpha-1,2-galactosyltransferase Gma12","termid":"PBO:0091905"}


id: FYPO:0002698
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of methylenetetrahydrofolate reductase (NADPH) activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal methylenetetrahydrofolate reductase (NADPH) activity","termid":"FYPO:0002695"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000661","FYPO:0000654","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"increased methylenetetrahydrofolate reductase (NADPH) activity","termid":"FYPO:0002698"}


id: GO:0006280
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process by which genetic material undergoes a detectable and heritable structural change. There are three categories of mutation: genome mutations, involving addition or subtraction of one or more whole chromosomes; chromosome mutations, which alter the structure of chromosomes; and gene mutations, where the structure of a gene is altered at the molecular level.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete mutagenesis (obsolete GO:0006280)","synonyms":[{"name":"mutagenesis","type":"exact"}],"termid":"GO:0006280"}


id: PBO:0079486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin domain containing 2","termid":"PBO:0079486"}


id: GO:0042069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving catecholamines.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of amine metabolic process","termid":"GO:0033238"},{"relation_name":"is_a","term_name":"regulation of primary metabolic process","termid":"GO:0080090"},{"relation_name":"regulates","term_name":"catecholamine metabolic process","termid":"GO:0006584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of catecholamine metabolic process","synonyms":[{"name":"regulation of catecholamine metabolism","type":"exact"}],"termid":"GO:0042069"}


id: GO:2000542
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of gastrulation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gastrulation","termid":"GO:0010470"},{"relation_name":"is_a","term_name":"negative regulation of embryonic development","termid":"GO:0045992"},{"relation_name":"negatively_regulates","term_name":"gastrulation","termid":"GO:0007369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of gastrulation","termid":"GO:2000542"}


id: PBO:0082067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-methyl-adenine DNA glycosylase; initiates base excision repair (BER) by removing damaged bases to create abasic sites that are subsequently repaired; expansion of BER repair removes alkylated bases resulting from alkylating agent-induced DNA damage, compensating for the lack of DNA repair by oxidative dealkylation; protein abundance increases in response to DNA replication stress","termid":"PBO:0082067"}


id: GO:0120510
data:
  {"annotated_genes":["SJAG_04016","SJAG_03701","SJAG_02306","SJAG_03222"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[88869,100848,105957,113925],"is_not":false,"summary":null,"term":"GO:0120510"}]},"cv_name":"cellular_component","definition":"A protein complex capable of condensing two 2Fe-2S clusters into one 4Fe-4S center in mitochondria. In S. cerevisiae, it consists of Isa1 and Isa2. In humans it consists of ISCA1 and ISCA2. Additional proteins may be present.","definition_xrefs":["PMID:29079644","PMID:33711344","PMID:25347204","PMID:34660592"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial protein-containing complex","termid":"GO:0098798"},{"relation_name":"is_a","term_name":"iron-sulfur cluster assembly complex","termid":"GO:1990229"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02306":null,"SJAG_03222":null,"SJAG_03701":null,"SJAG_04016":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005739"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005829","GO:0005575","GO:0005739"],"is_obsolete":false,"name":"mitochondrial [4Fe-4S] assembly complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ISA complex","type":"exact"},{"name":"iron-sulfur assembly complex","type":"related"}],"termid":"GO:0120510","terms_by_termid":{"GO:0120510":null}}


id: GO:0042951
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of arbutin, a glycoside found in the bearberry and related plants which has been used to treat urinary-tract diseases, from one side of a membrane to the other.","definition_xrefs":["GOC:jl","GOC:mtg_transport","PMID:19965875"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucoside transmembrane transporter activity","termid":"GO:0015573"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"arbutin transmembrane transporter activity","termid":"GO:0042951"}


id: PBO:0014605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sm snRNP core protein Smg1","termid":"PBO:0014605"}


id: GO:0009399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which nitrogen is taken from its relatively inert molecular form (N2) in the atmosphere and converted into nitrogen compounds useful for other chemical processes, such as ammonia, nitrate and nitrogen dioxide.","definition_xrefs":["Wikipedia:Nitrogen_fixation"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrogen cycle metabolic process","termid":"GO:0071941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0071941"}],"interesting_parent_ids":["GO:0071941","GO:0008150"],"is_obsolete":false,"name":"nitrogen fixation","secondary_identifiers":["MetaCyc:N2FIX-PWY"],"termid":"GO:0009399"}


id: GO:0051340
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of ligase activity, the catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of catalytic activity","termid":"GO:0050790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of ligase activity","synonyms":[{"name":"ligase regulator","type":"exact"}],"termid":"GO:0051340"}


id: PBO:0041850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caspase 1","termid":"PBO:0041850"}


id: PBO:0038525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily G member 5","termid":"PBO:0038525"}


id: GO:1990776
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an angiotensin stimulus. Angiotensin is any of three physiologically active peptides (angiotensin II, III, or IV) processed from angiotensinogen.","definition_xrefs":["PMID:22982863"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to peptide hormone","termid":"GO:0043434"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to angiotensin","termid":"GO:1990776"}


id: PBO:0002695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein Rrp16 (predicted)","termid":"PBO:0002695"}


id: PBO:0052586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine rich nucleolar protein 1 pseudogene 4","termid":"PBO:0052586"}


id: PBO:0062757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily N member 2","termid":"PBO:0062757"}


id: PBO:0029971
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_cycle_regulation_during_cellular_response_to_ionizing_radiation","termid":"PBO:0029971"}


id: PBO:0076376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TGF-beta activated kinase 1 (MAP3K7) binding protein 3","termid":"PBO:0076376"}


id: PBO:0063864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piezo type mechanosensitive ion channel component 2","termid":"PBO:0063864"}


id: FYPO:0000067
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of brefeldin A than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002682"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002682","FYPO:0005447","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"resistance to brefeldin A","synonyms":[{"name":"resistance to BFA","type":"exact"},{"name":"resistance to brefeldin A during mitotic cell cycle","type":"related"},{"name":"resistance to brefeldin A during vegetative growth","type":"exact"},{"name":"resistant to Brefeldin A","type":"exact"}],"termid":"FYPO:0000067"}


id: PBO:0071532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L34 pseudogene 35","termid":"PBO:0071532"}


id: PBO:0050972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon omega 1 pseudogene 15","termid":"PBO:0050972"}


id: PBO:0077029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-histidine guanylyltransferase 1 like","termid":"PBO:0077029"}


id: GO:0090244
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state that contributes to somitogenesis.","definition_xrefs":["GOC:ascb_2009","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Wnt signaling pathway","termid":"GO:0016055"},{"relation_name":"part_of","term_name":"somitogenesis","termid":"GO:0001756"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"Wnt signaling pathway involved in somitogenesis","synonyms":[{"name":"Wnt receptor signaling pathway involved in somitogenesis","type":"exact"},{"name":"Wnt receptor signalling","type":"exact"},{"name":"Wnt-activated signaling pathway involved in somitogenesis","type":"exact"}],"termid":"GO:0090244"}


id: GO:0035342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of inosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of purine nucleoside transport","termid":"GO:0032248"},{"relation_name":"is_a","term_name":"regulation of inosine transport","termid":"GO:0035341"},{"relation_name":"positively_regulates","term_name":"inosine transport","termid":"GO:0035340"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of inosine transport","synonyms":[{"name":"positive regulation of hypoxanthine riboside transport","type":"exact"}],"termid":"GO:0035342"}


id: PBO:0109616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 16, pseudogene","termid":"PBO:0109616"}


id: FYPO:0001156
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which cells cause the pH of their growth medium to decrease by a greater amount than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered effect on growth medium","termid":"FYPO:0001155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001155"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001155"],"is_obsolete":false,"name":"decreased pH of growth medium","synonyms":[{"name":"decreased pH level of growth medium","type":"exact"},{"name":"increased growth medium acidification","type":"exact"},{"name":"reduced pH of growth medium","type":"exact"}],"termid":"FYPO:0001156"}


id: PBO:0034469
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_mitotic_DNA_damage_checkpoint_during_cellular_response_to_methyl_methanesulfonate","termid":"PBO:0034469"}


id: PBO:0048433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucosylceramidase beta pseudogene 1","termid":"PBO:0048433"}


id: GO:0033007
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of mast cell activation as part of an immune response.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune effector process","termid":"GO:0002698"},{"relation_name":"is_a","term_name":"negative regulation of mast cell activation","termid":"GO:0033004"},{"relation_name":"is_a","term_name":"regulation of mast cell activation involved in immune response","termid":"GO:0033006"},{"relation_name":"is_a","term_name":"negative regulation of immune response","termid":"GO:0050777"},{"relation_name":"negatively_regulates","term_name":"mast cell activation involved in immune response","termid":"GO:0002279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of mast cell activation involved in immune response","synonyms":[{"name":"negative regulation of mast cell activation during immune response","type":"related"}],"termid":"GO:0033007"}


id: GO:1901960
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving isobutanol.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators","PMID:22224870"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary alcohol metabolic process","termid":"GO:0034308"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"isobutanol metabolic process","synonyms":[{"name":"isobutanol metabolism","type":"exact"}],"termid":"GO:1901960"}


id: GO:0002220
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to a cell surface receptor that leads to the activation of an innate immune response.","definition_xrefs":["ISBN:0781735149","GOC:add","PMID:15199967"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune response-activating cell surface receptor signaling pathway","termid":"GO:0002429"},{"relation_name":"is_a","term_name":"innate immune response-activating signaling pathway","termid":"GO:0002758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"innate immune response activating cell surface receptor signaling pathway","synonyms":[{"name":"activation of innate immune response by cell surface receptor signaling pathway","type":"exact"},{"name":"innate immune response activating cell surface receptor signalling pathway","type":"exact"}],"termid":"GO:0002220"}


id: GO:1902604
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of N-(4-aminobenzoyl)-L-glutamate across a membrane.","definition_xrefs":["GOC:TermGenie","GOC:pr","GO_REF:0000069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"p-aminobenzoyl-glutamate transport","termid":"GO:0015814"},{"relation_name":"is_a","term_name":"dipeptide transmembrane transport","termid":"GO:0035442"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"p-aminobenzoyl-glutamate transmembrane transport","synonyms":[{"name":"N-(4-aminobenzoyl)-L-glutamate transmembrane transport","type":"exact"}],"termid":"GO:1902604"}


id: PBO:0056825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major facilitator superfamily domain containing 14C, pseudogene","termid":"PBO:0056825"}


id: PBO:0067193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 255, pseudogene","termid":"PBO:0067193"}


id: GO:0033244
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving any antibiotic that contains the condensed beta-lactamthiazolidine ring system.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular ketone metabolic process","termid":"GO:0010565"},{"relation_name":"is_a","term_name":"regulation of amine metabolic process","termid":"GO:0033238"},{"relation_name":"is_a","term_name":"regulation of amide metabolic process","termid":"GO:0034248"},{"relation_name":"is_a","term_name":"regulation of sulfur metabolic process","termid":"GO:0042762"},{"relation_name":"is_a","term_name":"regulation of secondary metabolic process","termid":"GO:0043455"},{"relation_name":"regulates","term_name":"penicillin metabolic process","termid":"GO:0042316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0006790","GO:0019748","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"regulation of penicillin metabolic process","synonyms":[{"name":"regulation of penicillin metabolism","type":"exact"}],"termid":"GO:0033244"}


id: GO:1903086
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of sinapate ester biosynthesis.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:11080161"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of secondary metabolite biosynthetic process","termid":"GO:1900377"},{"relation_name":"is_a","term_name":"regulation of sinapate ester biosynthetic process","termid":"GO:1903085"},{"relation_name":"negatively_regulates","term_name":"sinapate ester biosynthetic process","termid":"GO:0033525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"negatively_regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"negative regulation of sinapate ester biosynthetic process","synonyms":[{"name":"down regulation of sinapate ester anabolism","type":"exact"},{"name":"down regulation of sinapate ester biosynthesis","type":"exact"},{"name":"down regulation of sinapate ester biosynthetic process","type":"exact"},{"name":"down regulation of sinapate ester formation","type":"exact"},{"name":"down regulation of sinapate ester synthesis","type":"exact"},{"name":"down-regulation of sinapate ester anabolism","type":"exact"},{"name":"down-regulation of sinapate ester biosynthesis","type":"exact"},{"name":"down-regulation of sinapate ester biosynthetic process","type":"exact"},{"name":"down-regulation of sinapate ester formation","type":"exact"},{"name":"down-regulation of sinapate ester synthesis","type":"exact"},{"name":"downregulation of sinapate ester anabolism","type":"exact"},{"name":"downregulation of sinapate ester biosynthesis","type":"exact"},{"name":"downregulation of sinapate ester biosynthetic process","type":"exact"},{"name":"downregulation of sinapate ester formation","type":"exact"},{"name":"downregulation of sinapate ester synthesis","type":"exact"},{"name":"inhibition of sinapate ester anabolism","type":"narrow"},{"name":"inhibition of sinapate ester biosynthesis","type":"narrow"},{"name":"inhibition of sinapate ester biosynthetic process","type":"narrow"},{"name":"inhibition of sinapate ester formation","type":"narrow"},{"name":"inhibition of sinapate ester synthesis","type":"narrow"},{"name":"negative regulation of sinapate ester anabolism","type":"exact"},{"name":"negative regulation of sinapate ester biosynthesis","type":"exact"},{"name":"negative regulation of sinapate ester formation","type":"exact"},{"name":"negative regulation of sinapate ester synthesis","type":"exact"}],"termid":"GO:1903086"}


id: PBO:0003800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin binding methyltransferase (predicted)","termid":"PBO:0003800"}


id: GO:0072433
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of events in which information about damage to DNA is received and converted into a molecular signal, contributing to a mitotic G2/M transition DNA damage checkpoint.","definition_xrefs":["GOC:mtg_cell_cycle"],"gene_count":0,"genotype_count":0,"name":"obsolete detection of DNA damage stimulus involved in mitotic G2 DNA damage checkpoint (obsolete GO:0072433)","synonyms":[{"name":"G2/M transition DNA damage checkpoint sensor mechanism","type":"related"},{"name":"detection of DNA damage stimulus involved in G2 DNA damage checkpoint","type":"related"},{"name":"detection of DNA damage stimulus involved in G2/M transition DNA damage checkpoint","type":"related"},{"name":"detection of DNA damage stimulus involved in mitotic G2/M transition DNA damage checkpoint","type":"exact"},{"name":"mitotic G2/M transition DNA damage checkpoint sensor mechanism","type":"related"},{"name":"mitotic G2/M transition DNA damage checkpoint sensor process","type":"related"},{"name":"sensing involved in G2/M transition DNA damage checkpoint","type":"related"},{"name":"sensing involved in mitotic G2/M transition DNA damage checkpoint","type":"related"}],"termid":"GO:0072433"}


id: PBO:0011148
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by Chinese Hamster Ovary (CHO) L-G1PT","termid":"PBO:0011148"}


id: PBO:0050550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heparanase 2 (inactive)","termid":"PBO:0050550"}


id: PBO:0079372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin alpha pseudogene 7","termid":"PBO:0079372"}


id: GO:1900763
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of averantin.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyketide biosynthetic process","termid":"GO:0030639"},{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"averantin metabolic process","termid":"GO:1900761"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0019748","GO:0008150"],"is_obsolete":false,"name":"averantin biosynthetic process","synonyms":[{"name":"averantin anabolism","type":"exact"},{"name":"averantin biosynthesis","type":"exact"},{"name":"averantin formation","type":"exact"},{"name":"averantin synthesis","type":"exact"}],"termid":"GO:1900763"}


id: PBO:0034505
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_nucleosome-dependent_ATPase_activity","termid":"PBO:0034505"}


id: PBO:0074506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear RNA activating complex polypeptide 5","termid":"PBO:0074506"}


id: PBO:0088231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6-phosphofructo-2-kinase","termid":"PBO:0088231"}


id: PBO:0060868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIMA related kinase 11","termid":"PBO:0060868"}


id: PBO:0038631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aminocarboxymuconate semialdehyde decarboxylase","termid":"PBO:0038631"}


id: GO:0048784
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a pigment, contributing to the process in which a membrane-bounded organelle develops into a pigment granule. Maturation is a developmental process, independent of morphogenetic (shape) change, that is required for a cell or structure to attain its fully functional state.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pigment metabolic process involved in developmental pigmentation","termid":"GO:0043324"},{"relation_name":"is_a","term_name":"pigment biosynthetic process involved in pigment accumulation","termid":"GO:0043477"},{"relation_name":"part_of","term_name":"pigment granule maturation","termid":"GO:0048757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pigment biosynthetic process involved in pigment granule maturation","synonyms":[{"name":"pigment biosynthetic process during pigment granule maturation","type":"related"}],"termid":"GO:0048784"}


id: GO:0100017
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates single organismal cell-cell adhesion.","definition_xrefs":["GOC:cjm","GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of cell-cell adhesion by transcription from RNA polymerase II promoter (obsolete GO:0100017)","termid":"GO:0100017"}


id: PBO:0083414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the essential gene RPP0","termid":"PBO:0083414"}


id: FYPO:0004883
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle midzone is abnormal. The mitotic spindle midzone is the area in the center of the mitotic spindle where the spindle microtubules from opposite poles overlap.","definition_xrefs":["GO:1902967","PomBase:mah","GO:1990023"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to mitotic spindle","termid":"FYPO:0002824"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal protein localization to mitotic spindle midzone","synonyms":[{"name":"abnormal protein localisation to mitotic spindle midzone","type":"exact"},{"name":"abnormal protein localization to spindle midzone during mitotic cell cycle","type":"related"},{"name":"abnormal protein localization to spindle midzone during vegetative growth","type":"exact"}],"termid":"FYPO:0004883"}


id: PBO:0004857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair protein Rad9 homolog, Rhp9","termid":"PBO:0004857"}


id: PBO:0041057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bromodomain containing 8","termid":"PBO:0041057"}


id: PBO:0071531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L34 pseudogene 34","termid":"PBO:0071531"}


id: GO:0102535
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ladanein + S-adenosyl-L-methionine = H+ + S-adenosyl-L-homocysteine + salvigenin.","definition_xrefs":["RHEA:73247"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016741","GO:0016740"],"is_obsolete":false,"name":"ladanein 6-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-14752"],"termid":"GO:0102535"}


id: PBO:0038416
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-acts_upstream_of_or_within,_negative_effect","termid":"PBO:0038416"}


id: PBO:0006203
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-gene_product","termid":"PBO:0006203"}


id: PBO:0039912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho guanine nucleotide exchange factor 10 like","termid":"PBO:0039912"}


id: PBO:0040695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"branched chain keto acid dehydrogenase E1 subunit alpha","termid":"PBO:0040695"}


id: GO:0140829
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(in) + HCO3-(out) = solute(out) + HCO3-(in).","definition_xrefs":["PMID:12440690"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic anion transmembrane transporter activity","termid":"GO:0008509"},{"relation_name":"is_a","term_name":"bicarbonate transmembrane transporter activity","termid":"GO:0015106"},{"relation_name":"is_a","term_name":"antiporter activity","termid":"GO:0015297"},{"relation_name":"is_a","term_name":"active monoatomic ion transmembrane transporter activity","termid":"GO:0022853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"bicarbonate:monoatomic anion antiporter activity","secondary_identifiers":["TC:2.A.31.1.1"],"synonyms":[{"name":"bicarbonate:anion antiporter activity","type":"broad"},{"name":"hydrogencarbonate:monoatomic anion antiporter activity","type":"exact"}],"termid":"GO:0140829"}


id: PBO:0078566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 50","termid":"PBO:0078566"}


id: GO:0060863
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately modulating the rate, or extent of floral organ abscission.","definition_xrefs":["GOC:sdb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal transduction","termid":"GO:0007165"},{"relation_name":"is_a","term_name":"regulation of floral organ abscission","termid":"GO:0060860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of floral organ abscission by signal transduction","termid":"GO:0060863"}


id: GO:0072442
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of events in which information about whether DNA replication is complete is received and converted into a molecular signal, contributing to a mitotic DNA replication checkpoint.","definition_xrefs":["GOC:mtg_cell_cycle"],"gene_count":0,"genotype_count":0,"name":"obsolete detection of stimulus involved in mitotic DNA replication checkpoint (obsolete GO:0072442)","synonyms":[{"name":"S-M checkpoint sensor mechanism","type":"related"},{"name":"S-M checkpoint sensor process","type":"related"},{"name":"detection of stimulus involved in S-M checkpoint","type":"related"},{"name":"mitotic DNA replication checkpoint sensor mechanism","type":"related"},{"name":"mitotic DNA replication checkpoint sensor process","type":"related"},{"name":"sensing involved in S-M checkpoint","type":"related"},{"name":"sensing involved in mitotic DNA replication checkpoint","type":"related"}],"termid":"GO:0072442"}


id: GO:0031079
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the selective cleavage of GlnGly bond in the poliovirus polyprotein. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly.","definition_xrefs":["EC:3.4.22.28"],"gene_count":0,"genotype_count":0,"name":"obsolete picornain 3C activity (obsolete GO:0031079)","synonyms":[{"name":"3C protease activity","type":"related"},{"name":"3C proteinase activity","type":"related"},{"name":"coxsackievirus 3C proteinase activity","type":"related"},{"name":"cysteine proteinase 3C","type":"related"},{"name":"foot-and-mouth protease 3C activity","type":"narrow"},{"name":"foot-and-mouth-disease virus proteinase 3C","type":"related"},{"name":"hepatitis A virus 3C proteinase activity","type":"related"},{"name":"picornain 3C activity","type":"exact"},{"name":"picornavirus endopeptidase 3C activity","type":"narrow"},{"name":"poliovirus protease 3C activity","type":"narrow"},{"name":"poliovirus proteinase 3C","type":"related"},{"name":"protease 3C","type":"related"},{"name":"rhinovirus protease 3C activity","type":"narrow"},{"name":"rhinovirus proteinase 3C","type":"related"},{"name":"tomato ringspot nepovirus 3C-related protease","type":"related"}],"termid":"GO:0031079"}


id: _global:indirectly_regulates
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q.","direct_ancestors":[{"relation_name":"is_a","term_name":"indirectly_causally_upstream_of","termid":"_global:indirectly_causally_upstream_of"},{"relation_name":"is_a","term_name":"regulates","termid":"_global:regulates"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"indirectly_regulates","secondary_identifiers":["RO:0012012"],"termid":"_global:indirectly_regulates"}


id: PBO:0054908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2322","termid":"PBO:0054908"}


id: PBO:0056648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 15 pseudogene 9","termid":"PBO:0056648"}


id: PR:O14463
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A thioredoxin that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01101","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC7D4.07c","secondary_identifiers":["UniProtKB:O14463"],"synonyms":[{"name":"Spom972h-TXN","type":"exact"},{"name":"TR-1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Trx-1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14463"}


id: PBO:0042989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHEK2 pseudogene 2","termid":"PBO:0042989"}


id: FYPO:0004864
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is viable, is curved along the long axis, and contains interphase cytoplasmic microtubules that are longer than normal and curved. In a curved cell, the long axis follows a smooth bend rather than a straight line.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"long curved interphase microtubules","termid":"FYPO:0004511"},{"relation_name":"is_a","term_name":"viable curved vegetative cell","termid":"FYPO:0002112"},{"relation_name":"is_a","term_name":"long curved interphase microtubules","termid":"FYPO:0004511"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0002399"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000005","FYPO:0005447","FYPO:0000002","FYPO:0000004","FYPO:0002399","FYPO:0000054"],"is_obsolete":false,"name":"viable curved vegetative cell with long curved interphase microtubules","synonyms":[{"name":"curved viable cell with elongated curved interphase microtubules","type":"exact"},{"name":"viable curved cell with long curved interphase microtubules during vegetative growth","type":"exact"},{"name":"viable curved vegetative cell with long curved cytoplasmic microtubules during mitotic interphase","type":"exact"},{"name":"viable curved vegetative cell with long curved interphase cytoplasmic microtubules","type":"exact"},{"name":"viable curved vegetative cell with long curved interphase microtubules during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004864"}


id: PBO:0084527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the FLO family of cell wall flocculation proteins; not expressed in most lab strains; overproduction induces flocculation that can be inhibited by mannose, sucrose, or glucose; overproduction also promotes haploid invasive growth and diploid filamentous growth","termid":"PBO:0084527"}


id: PATO:0002053
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's being flattened along dorso-ventral axis.","definition_xrefs":["PATOC:MSP"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flattened","termid":"PATO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dorso-ventrally flattened","termid":"PATO:0002053"}


id: FYPO:0007757
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the new mitotic spindle pole body is normal (i.e. indistinguishable from wild type) during anaphase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to new mitotic spindle pole body","termid":"FYPO:0003330"},{"relation_name":"is_a","term_name":"normal protein localization to mitotic spindle pole body during anaphase","termid":"FYPO:0007568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to new mitotic spindle pole body during anaphase","synonyms":[{"name":"normal asymmetric protein localization to new mitotic spindle pole body during anaphase","type":"exact"},{"name":"normal protein localisation to new mitotic spindle pole body during anaphase","type":"exact"},{"name":"normal protein localization to new mitotic SPB during anaphase","type":"exact"},{"name":"normal protein localization to new mitotic spindle pole body during anaphase of mitotic cell cycle","type":"exact"},{"name":"normal protein localization to new spindle pole body during anaphase during vegetative growth","type":"exact"},{"name":"normal protein localization to new spindle pole body during mitotic anaphase","type":"exact"}],"termid":"FYPO:0007757"}


id: PBO:0059926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 12","termid":"PBO:0059926"}


id: GO:0006889
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the concentration of calcium in the endoplasmic reticulum.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of calcium in ER (obsolete GO:0006889)","synonyms":[{"name":"regulation of calcium in ER","type":"exact"}],"termid":"GO:0006889"}


id: GO:0009390
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An enzyme complex that catalyzes the formation of dimethyl sulfide from dimethyl sulfoxide.","definition_xrefs":["UM-BBD_enzymeID:e0188"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"dimethyl sulfoxide reductase complex","synonyms":[{"name":"dimethyl sulphoxide reductase complex","type":"exact"}],"termid":"GO:0009390"}


id: PBO:0028523
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_acetylation","termid":"PBO:0028523"}


id: PBO:0001695
data:
  {"annotation_feature_type":"gene","cv_name":"sequence_feature","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein destruction box","termid":"PBO:0001695"}


id: GO:0050941
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of pigment cell differentiation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell differentiation","termid":"GO:0045596"},{"relation_name":"is_a","term_name":"negative regulation of developmental pigmentation","termid":"GO:0048086"},{"relation_name":"is_a","term_name":"regulation of pigment cell differentiation","termid":"GO:0050932"},{"relation_name":"negatively_regulates","term_name":"pigment cell differentiation","termid":"GO:0050931"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of pigment cell differentiation","synonyms":[{"name":"down regulation of pigment cell differentiation","type":"exact"},{"name":"down-regulation of pigment cell differentiation","type":"exact"},{"name":"downregulation of pigment cell differentiation","type":"exact"},{"name":"inhibition of pigment cell differentiation","type":"narrow"}],"termid":"GO:0050941"}


id: GO:1901125
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving candicidin.","definition_xrefs":["GOC:yaf","GOC:TermGenie","UniPathway:UPA00101"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"candicidin metabolic process","synonyms":[{"name":"candicidin metabolism","type":"exact"}],"termid":"GO:1901125"}


id: PATO:0001136
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001136 ig e concentration (obsolete PATO:0001136)","termid":"PATO:0001136"}


id: PBO:0067523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 666, pseudogene","termid":"PBO:0067523"}


id: PBO:0084720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial inner membrane protein; binds to the 5' UTR of the COX3 mRNA to activate its translation together with Pet122p and Pet494p; also binds to the COX1 Group I intron AI5 beta to facilitate exon ligation during splicing; also stimulates efficient synthesis of Cox1p","termid":"PBO:0084720"}


id: PBO:0048404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth arrest specific 8","termid":"PBO:0048404"}


id: GO:0120501
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-methionyl-[F-actin] + NADPH + O2 + H+ = L-methionyl-(R)-S-oxide-[F-actin] + NADP+ + H2O.","definition_xrefs":["RHEA:51308"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"F-actin monooxygenase activity","secondary_identifiers":["EC:1.14.13.225"],"termid":"GO:0120501"}


id: GO:0085018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a host organism maintains the structure and function of a symbiont-containing vacuole. The symbiont-containing vacuole is a membrane-bounded vacuole within a host cell in which a symbiont organism resides, and can serve to reduce pathogenicity of invading symbionts by restricting them to the vacuolar compartment.","definition_xrefs":["GOC:jl","GOC:yaf","PMID:18665841"],"gene_count":0,"genotype_count":0,"name":"obsolete maintenance of symbiont-containing vacuole by host (obsolete GO:0085018)","synonyms":[{"name":"maintenance of parasitophorous vacuole","type":"exact"},{"name":"maintenance of pathogen-containing vacuole","type":"exact"},{"name":"maintenance of vacuolar integrity during bacterial infection","type":"narrow"}],"termid":"GO:0085018"}


id: GO:0045242
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Complex that possesses isocitrate dehydrogenase (NAD+) activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tricarboxylic acid cycle heteromeric enzyme complex","termid":"GO:0045239"},{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"isocitrate dehydrogenase complex (NAD+)","termid":"GO:0045242"}


id: GO:0046708
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of IDP, inosine 5'-diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide biosynthetic process","termid":"GO:0009152"},{"relation_name":"is_a","term_name":"purine ribonucleoside diphosphate biosynthetic process","termid":"GO:0009180"},{"relation_name":"is_a","term_name":"IDP metabolic process","termid":"GO:0046707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"IDP biosynthetic process","synonyms":[{"name":"IDP anabolism","type":"exact"},{"name":"IDP biosynthesis","type":"exact"},{"name":"IDP formation","type":"exact"},{"name":"IDP synthesis","type":"exact"}],"termid":"GO:0046708"}


id: FYPO:0006972
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of S-adenosyl-L-cysteine measured in the cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular S-adenosyl-L-cysteine level","synonyms":[{"name":"decreased cellular S-adenosyl-L-cysteine level during mitotic cell cycle","type":"related"},{"name":"decreased cellular S-adenosyl-L-cysteine level during vegetative growth","type":"exact"},{"name":"decreased level of S-adenosyl-L-cysteine in cell","type":"exact"},{"name":"reduced cellular S-adenosyl-L-cysteine level","type":"exact"}],"termid":"FYPO:0006972"}


id: PBO:0070501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L6","termid":"PBO:0070501"}


id: PBO:0002728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-HIT protein Hit1 (predicted)","termid":"PBO:0002728"}


id: FYPO:0001992
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a cell contains a single septum, has one nucleus, is elongated, and is inviable. The septum is in an abnormal location, and the nucleus is located in one compartment of the septated cell.","definition_xrefs":["PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable mononucleate vegetative cell with mislocalized septum and anucleate compartment","termid":"FYPO:0001226"},{"relation_name":"is_a","term_name":"inviable elongated mononucleate monoseptate vegetative cell","termid":"FYPO:0001917"},{"relation_name":"is_a","term_name":"inviable elongated vegetative cell with abnormal septum","termid":"FYPO:0002889"},{"relation_name":"output_of","term_name":"cut","termid":"FYPO:0000229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0000641"},{"rel_name":"has_part","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0000005","FYPO:0000002","FYPO:0001320","FYPO:0000337","FYPO:0000631","FYPO:0000004","FYPO:0000641","FYPO:0001985","FYPO:0000032"],"is_obsolete":false,"name":"inviable elongated mononucleate vegetative cell with mislocalized septum","secondary_identifiers":["FYPO:0001993"],"synonyms":[{"name":"inviable elongated mononucleate cell with abnormal septum location","type":"exact"},{"name":"inviable elongated mononucleate cell with abnormal septum position","type":"exact"},{"name":"inviable elongated mononucleate cell with asymmetric septum","type":"exact"},{"name":"inviable elongated mononucleate cell with asymmetrically located septum","type":"exact"},{"name":"inviable elongated mononucleate cell with mislocalised septum","type":"exact"},{"name":"inviable elongated mononucleate cell with mislocalized septum during vegetative growth","type":"exact"},{"name":"inviable elongated mononucleate monoseptate vegetative cell with mislocalized septum","type":"exact"},{"name":"inviable elongated mononucleate vegetative cell with mislocalized septum and mislocalized nucleus","type":"exact"},{"name":"inviable elongated mononucleate vegetative cell with mislocalized septum during mitotic cell cycle","type":"related"},{"name":"inviable elongated mononucleate vegetative cell with misplaced septum","type":"exact"},{"name":"inviable elongated mononucleate vegetative cell with single mislocalized septum","type":"exact"},{"name":"inviable long mononucleate cell with mislocalized septum","type":"exact"},{"name":"inviable vegetative elongated mononucleate cell with mislocalized septum","type":"exact"},{"name":"lethal; elongated mononucleate vegetative cell with mislocalized septum","type":"exact"}],"termid":"FYPO:0001992"}


id: PBO:0029090
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_microtubule_bundle_formation","termid":"PBO:0029090"}


id: GO:0031117
data:
  {"annotated_genes":["SJAG_04312"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97950],"is_not":false,"summary":null,"term":"GO:0031117"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of microtubule depolymerization.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of microtubule polymerization or depolymerization","termid":"GO:0031112"},{"relation_name":"is_a","term_name":"regulation of microtubule depolymerization","termid":"GO:0031114"},{"relation_name":"is_a","term_name":"positive regulation of protein depolymerization","termid":"GO:1901881"},{"relation_name":"is_a","term_name":"positive regulation of supramolecular fiber organization","termid":"GO:1902905"},{"relation_name":"positively_regulates","term_name":"microtubule depolymerization","termid":"GO:0007019"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04312":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0000226"},{"rel_name":"positively_regulates","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0000226","GO:0007010","GO:0008150"],"is_obsolete":false,"name":"positive regulation of microtubule depolymerization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of microtubule depolymerization","type":"narrow"},{"name":"microtubule destabilization","type":"exact"},{"name":"positive regulation of microtubule catastrophe","type":"narrow"},{"name":"positive regulation of microtubule disassembly","type":"exact"},{"name":"stimulation of microtubule depolymerization","type":"narrow"},{"name":"up regulation of microtubule depolymerization","type":"exact"},{"name":"up-regulation of microtubule depolymerization","type":"exact"},{"name":"upregulation of microtubule depolymerization","type":"exact"}],"termid":"GO:0031117","terms_by_termid":{"GO:0031117":null}}


id: GO:0071066
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events involved in the perception of wind in which a mechanical stimulus is received and converted into a molecular signal.","definition_xrefs":["PMID:19279637","GOC:dos","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system process","termid":"GO:0050877"},{"relation_name":"is_a","term_name":"detection of mechanical stimulus involved in sensory perception","termid":"GO:0050974"},{"relation_name":"part_of","term_name":"sensory perception of wind","termid":"GO:0071063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of mechanical stimulus involved in sensory perception of wind","synonyms":[{"name":"detection of mechanical stimulus involved in sensory perception of air flow","type":"exact"},{"name":"detection of wind","type":"exact"},{"name":"perception of wind, detection of mechanical stimulus","type":"exact"},{"name":"perception of wind, sensory detection of mechanical stimulus","type":"exact"},{"name":"perception of wind, sensory transduction of mechanical stimulus","type":"exact"},{"name":"sensory detection of mechanical stimulus during perception of wind","type":"exact"},{"name":"sensory transduction of mechanical stimulus during perception of wind","type":"exact"},{"name":"sensory transduction of wind","type":"exact"}],"termid":"GO:0071066"}


id: GO:0033540
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A fatty acid beta-oxidation pathway in which the initial step, which converts an acyl-CoA to a trans-2-enoyl-CoA, is catalyzed by acyl-CoA oxidase; the electrons removed by oxidation pass directly to oxygen and produce hydrogen peroxide, which is cleaved by peroxisomal catalases. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and ends when only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).","definition_xrefs":["MetaCyc:PWY-5136","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid beta-oxidation","termid":"GO:0006635"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044281","GO:0044248","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"fatty acid beta-oxidation using acyl-CoA oxidase","termid":"GO:0033540"}


id: PBO:0110456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional corepressor for ribosomal proteins via TOR signaling pathway Ifh1","termid":"PBO:0110456"}


id: GO:0061078
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the regulated release of a prostaglandin from a cell and contributes to the immune response.","definition_xrefs":["GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of prostaglandin secretion","termid":"GO:0032308"},{"relation_name":"positively_regulates","term_name":"prostaglandin secretion involved in immune response","termid":"GO:0090323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of prostaglandin secretion involved in immune response","synonyms":[{"name":"positive regulation of prostaglandin secretion during immune response","type":"related"}],"termid":"GO:0061078"}


id: PBO:0079103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSC complex subunit 1","termid":"PBO:0079103"}


