# terms

id: GO:1905654
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of artery smooth muscle contraction.","definition_xrefs":["GOC:BHF","PMID:27389411","GOC:TermGenie","GOC:BHF_miRNA","GO_REF:0000058","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vascular associated smooth muscle contraction","termid":"GO:0003056"},{"relation_name":"regulates","term_name":"artery smooth muscle contraction","termid":"GO:0014824"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of artery smooth muscle contraction","termid":"GO:1905654"}


id: GO:0019213
data:
  {"annotated_genes":["SJAG_03013","SJAG_01075","SJAG_01416","SJAG_04039","SJAG_03627","SJAG_03844","SJAG_00581","SJAG_04186"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87872],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004099"},{"annotations":[105547,108188,93327],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004407"},{"annotations":[100291,105548,108189],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031078"},{"annotations":[100292],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990162"},{"annotations":[100293,105549],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032129"},{"annotations":[105550],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140937"},{"annotations":[100294,93328,105551],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034739"},{"annotations":[105552],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180033"},{"annotations":[105553],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180032"},{"annotations":[97700],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000225"},{"annotations":[86179],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032041"},{"annotations":[86180],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140765"},{"annotations":[110493,100296],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046969"},{"annotations":[100297],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046970"},{"annotations":[110494,105554],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033558"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of an acetyl group or groups from a substrate molecule.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity","termid":"GO:0016787"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00581":null,"SJAG_01075":null,"SJAG_01416":null,"SJAG_03013":null,"SJAG_03627":null,"SJAG_03844":null,"SJAG_04039":null,"SJAG_04186":null},"genotype_count":0,"in_subsets":["mf_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"deacetylase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-5689000"],"termid":"GO:0019213","terms_by_termid":{"GO:0000225":null,"GO:0004099":null,"GO:0004407":null,"GO:0031078":null,"GO:0032041":null,"GO:0032129":null,"GO:0033558":null,"GO:0034739":null,"GO:0046969":null,"GO:0046970":null,"GO:0140765":null,"GO:0140937":null,"GO:0180032":null,"GO:0180033":null,"GO:1990162":null}}


id: GO:0070782
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A phospholipid scrambling process that results in the appearance of phosphatidylserine on the outer leaflet of the plasma membrane of an apoptotic cell, which acts as an 'eat-me' signal for engulfing cells. Phosphatidylserine is exposed on the apoptotic cell surface by a phospholipid scramblase activity.","definition_xrefs":["PMID:11536005","GOC:rk","GOC:mtg_apoptosis","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane phospholipid scrambling","termid":"GO:0017121"},{"relation_name":"part_of","term_name":"execution phase of apoptosis","termid":"GO:0097194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0061024","GO:0008150"],"is_obsolete":false,"name":"phosphatidylserine exposure on apoptotic cell surface","synonyms":[{"name":"externalization of phosphatidylserine","type":"exact"}],"termid":"GO:0070782"}


id: PBO:0090207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIIC complex subunit Sfc9","termid":"PBO:0090207"}


id: PBO:0086477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative mitochondrial protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies","termid":"PBO:0086477"}


id: PBO:0086318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with similarity to Emp24p and Erv25p; member of the p24 family involved in ER to Golgi transport","termid":"PBO:0086318"}


id: PBO:0001842
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.1.1.65","termid":"PBO:0001842"}


id: PBO:0004392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homoserine dehydrogenase (predicted)","termid":"PBO:0004392"}


id: PBO:0088575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF3245 nucleolar protein, conserved in fungi and plant family","termid":"PBO:0088575"}


id: PBO:0046913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity E5","termid":"PBO:0046913"}


id: PBO:0110324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetylcholinesterase (Yt blood group)","termid":"PBO:0110324"}


id: PR:Q9C0V7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An arylsulfatase B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02326"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized sulfatase PB10D8.02c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPB10D8.02c","secondary_identifiers":["UniProtKB:Q9C0V7"],"synonyms":[{"name":"Spom972h-ARSB","type":"exact"}],"termid":"PR:Q9C0V7"}


id: PBO:0088684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CIA machinery monothiol glutaredoxin Grx4","termid":"PBO:0088684"}


id: PBO:0044961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dehydrogenase/reductase 7","termid":"PBO:0044961"}


id: PBO:0084101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Guanylate kinase; converts GMP to GDP; required for growth and mannose outer chain elongation of cell wall N-linked glycoproteins","termid":"PBO:0084101"}


id: GO:1903448
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of geraniol.","definition_xrefs":["GO_REF:0000068","GOC:di","GOC:TermGenie","PMID:23200656"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyprenol biosynthetic process","termid":"GO:0016094"},{"relation_name":"is_a","term_name":"monoterpenoid biosynthetic process","termid":"GO:0016099"},{"relation_name":"is_a","term_name":"primary alcohol biosynthetic process","termid":"GO:0034309"},{"relation_name":"is_a","term_name":"olefinic compound biosynthetic process","termid":"GO:0120255"},{"relation_name":"is_a","term_name":"geraniol metabolic process","termid":"GO:1903446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"geraniol biosynthetic process","synonyms":[{"name":"geraniol anabolism","type":"exact"},{"name":"geraniol biosynthesis","type":"exact"},{"name":"geraniol formation","type":"exact"},{"name":"geraniol synthesis","type":"exact"}],"termid":"GO:1903448"}


id: PBO:0038719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin gamma 1 pseudogene 14","termid":"PBO:0038719"}


id: FYPO:0002387
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to heterochromatin at subtelomeres is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to heterochromatin during vegetative growth","termid":"FYPO:0002385"},{"relation_name":"is_a","term_name":"decreased protein localization to telomere","termid":"FYPO:0003803"},{"relation_name":"is_a","term_name":"decreased protein localization to subtelomeric heterochromatin","termid":"FYPO:0005918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to subtelomeric heterochromatin during vegetative growth","synonyms":[{"name":"decreased protein localisation to heterochromatin at subtelomere during vegetative growth","type":"exact"},{"name":"decreased protein localization to heterochromatin at subtelomere during vegetative growth","type":"exact"},{"name":"decreased protein localization to subtelomeric heterochromatin during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to telomeric heterochromatin during vegetative growth","type":"related"},{"name":"reduced protein localization to subtelomeric heterochromatin during vegetative growth","type":"exact"}],"termid":"FYPO:0002387"}


id: PBO:0065895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB40A like","termid":"PBO:0065895"}


id: PBO:0044294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CXXC finger protein 4","termid":"PBO:0044294"}


id: GO:0006677
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving glycosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of a monosaccharide (or derivative) by a ceramide group.","definition_xrefs":["ISBN:0198506732","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ceramide metabolic process","termid":"GO:0006672"},{"relation_name":"is_a","term_name":"glycosphingolipid metabolic process","termid":"GO:0006687"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"glycosylceramide metabolic process","synonyms":[{"name":"glycosylceramide metabolism","type":"exact"}],"termid":"GO:0006677"}


id: PBO:0064322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipid phosphatase related 4","termid":"PBO:0064322"}


id: GO:1900410
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of histone modification.","definition_xrefs":["GOC:TermGenie","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of histone modification by regulation of transcription from RNA polymerase II promoter (obsolete GO:1900410)","termid":"GO:1900410"}


id: PR:Q00619
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mam2 gene.","definition_xrefs":["UniProtKB:Q00619","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pheromone P-factor receptor (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11H11.04","synonyms":[{"name":"Spom972h-mam2","type":"exact"}],"termid":"PR:Q00619"}


id: GO:0046635
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of alpha-beta T cell activation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of alpha-beta T cell activation","termid":"GO:0046634"},{"relation_name":"is_a","term_name":"positive regulation of T cell activation","termid":"GO:0050870"},{"relation_name":"positively_regulates","term_name":"alpha-beta T cell activation","termid":"GO:0046631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"positive regulation of alpha-beta T cell activation","synonyms":[{"name":"activation of alpha-beta T cell activation","type":"narrow"},{"name":"positive regulation of alpha-beta T lymphocyte activation","type":"exact"},{"name":"positive regulation of alpha-beta T-cell activation","type":"exact"},{"name":"positive regulation of alpha-beta T-lymphocyte activation","type":"exact"},{"name":"stimulation of alpha-beta T cell activation","type":"narrow"},{"name":"up regulation of alpha-beta T cell activation","type":"exact"},{"name":"up-regulation of alpha-beta T cell activation","type":"exact"},{"name":"upregulation of alpha-beta T cell activation","type":"exact"}],"termid":"GO:0046635"}


id: PR:O13870
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- not3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13870"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general negative regulator of transcription subunit 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1B3.05","synonyms":[{"name":"Spom972h-not3","type":"exact"}],"termid":"PR:O13870"}


id: GO:0044850
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A type of ovulation cycle where the endometrium is shed if pregnancy does not occur.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"ovulation cycle","termid":"GO:0042698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"menstrual cycle","secondary_identifiers":["Wikipedia:Menstrual_cycle"],"termid":"GO:0044850"}


id: GO:0140573
data:
  {"annotated_genes":["SJAG_00302"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[115471],"is_not":false,"summary":null,"term":"GO:0140573"}]},"cv_name":"cellular_component","definition":"A complex comprised of DNA wound around a multisubunit core and associated proteins containing the histone H3, which forms the primary packing unit of DNA into higher order structures.","definition_xrefs":["PMID:33155135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleosome","termid":"GO:0000786"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00302":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005694"],"is_obsolete":false,"name":"histone H3-containing nucleosome","references_by_uniquename":{"PMID:24184107":null},"synonyms":[{"name":"histone H3 containing nucleosome","type":"exact"}],"termid":"GO:0140573","terms_by_termid":{"GO:0140573":null}}


id: PBO:0063771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHD finger protein 2 pseudogene 2","termid":"PBO:0063771"}


id: FYPO:0008246
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA transcribed from cenH measured in a cell is normal. cenH is a region located between mat2-P and mat3-M that is homologous to centromeric repeats, and that produces non-coding RNAs and small interfering RNAs.","definition_xrefs":["PomBase:pc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA level during vegetative growth","termid":"FYPO:0001317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001312","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal cenH-derived RNA level","termid":"FYPO:0008246"}


id: PBO:0049877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hephaestin","termid":"PBO:0049877"}


id: GO:0048534
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of any organ involved in hematopoiesis (also known as hemopoiesis) or lymphoid cell activation over time, from its formation to the mature structure. Such development includes differentiation of resident cell types (stromal cells) and of migratory cell types dependent on the unique microenvironment afforded by the organ for their proper differentiation.","definition_xrefs":["GOC:rl","ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"},{"relation_name":"part_of","term_name":"immune system development","termid":"GO:0002520"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hematopoietic or lymphoid organ development","synonyms":[{"name":"haematopoietic or lymphoid organ development","type":"exact"},{"name":"haemopoietic or lymphoid organ development","type":"exact"},{"name":"hemopoietic or lymphoid organ development","type":"exact"}],"termid":"GO:0048534"}


id: MOD:00151
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to L-cysteinyl molybdopterin.","definition_xrefs":["Unimod:391#C","PubMed:14527393","PubMed:9428520","RESID:AA0142","PubMed:7878465"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molybdenum pterin containing modification","termid":"MOD:00744"},{"relation_name":"is_a","term_name":"phosphorus containing modified residue","termid":"MOD:00861"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-cysteine residue","termid":"MOD:02067"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-cysteinyl molybdopterin","synonyms":[{"name":"(4R,5aR,11aR)-8-amino-2-[(2R)-2-amino-2-carboxyethyl]sulfanyl-4,5a,6,9,10,11,11a-heptahydro-4-(phosphoric acid)methyl-2,2,10-trioxo-pteridino[6,7-5,6]pyrano[3,4-4,3][1,2,5]molybdadithiolene","type":"exact"},{"name":"L-cysteinyl molybdopterin","type":"exact"},{"name":"METAL Molybdenum-pterin","type":"exact"},{"name":"MoPterCys","type":"exact"},{"name":"Molybdopterin","type":"related"},{"name":"cysteinyl Mo-molybdopterin","type":"exact"},{"name":"cysteinyl Mo-pterin","type":"exact"},{"name":"molybdoenzyme molybdenum cofactor","type":"exact"},{"name":"molybdopterin","type":"related"}],"termid":"MOD:00151"}


id: GO:0141044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The global programming of epigenetic modifications following binucleate central cell fertilization. This involves DNA methylation at the silent allele. In the endosperm, maternal genomes are hypomethylated compared with the paternal genome.","definition_xrefs":["PMID:16527743","PMID:28118754","PMID:16469697","PMID:10580004","PMID:18700816"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epigenetic programming in the zygotic pronuclei","termid":"GO:0044725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0006325"],"is_obsolete":false,"name":"epigenetic programming in the endosperm","synonyms":[{"name":"epigenetic reprogramming in the endosperm","type":"exact"}],"termid":"GO:0141044"}


id: GO:0019278
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of UDP-N-acetylgalactosamine, a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-sugar catabolic process","termid":"GO:0009227"},{"relation_name":"is_a","term_name":"UDP-N-acetylgalactosamine metabolic process","termid":"GO:0019276"},{"relation_name":"is_a","term_name":"amino sugar catabolic process","termid":"GO:0046348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"UDP-N-acetylgalactosamine catabolic process","synonyms":[{"name":"UDP-N-acetylgalactosamine breakdown","type":"exact"},{"name":"UDP-N-acetylgalactosamine catabolism","type":"exact"},{"name":"UDP-N-acetylgalactosamine degradation","type":"exact"}],"termid":"GO:0019278"}


id: GO:1990545
data:
  {"annotated_genes":["SJAG_00835"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99740],"is_not":false,"summary":null,"term":"GO:1990545"}]},"cv_name":"biological_process","definition":"The process in which thiamine pyrophosphate is transported across a mitochondrial membrane, into or out of the mitochondrion.","definition_xrefs":["PMID:12411483"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiamine pyrophosphate transmembrane transport","termid":"GO:0030974"},{"relation_name":"is_a","term_name":"mitochondrial transmembrane transport","termid":"GO:1990542"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00835":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"mitochondrial thiamine pyrophosphate transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990545","terms_by_termid":{"GO:1990545":null}}


id: PBO:0060640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor coactivator 3","termid":"PBO:0060640"}


id: PBO:0064116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polycystin 1, transient receptor potential channel interacting pseudogene 3","termid":"PBO:0064116"}


id: PBO:0050816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyaluronidase 1","termid":"PBO:0050816"}


id: PBO:0047166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 193 member B","termid":"PBO:0047166"}


id: FYPO:0003174
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleotide-excision repair is normal (i.e. indistinguishable from wild type) during a cellular response to ultraviolet light. Nucleotide-excision repair is a DNA repair process in which a small region of the strand surrounding the damage is removed as an oligonucleotide, and the resulting small gap is filled in by the sequential action of DNA polymerase and DNA ligase.","definition_xrefs":["GO:0006289","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal DNA repair","termid":"FYPO:0006569"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000298","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal nucleotide-excision repair during cellular response to UV","synonyms":[{"name":"normal NER during cellular response to UV","type":"exact"},{"name":"normal excision repair during cellular response to UV","type":"broad"},{"name":"normal nucleotide-excision repair during cellular response to UV during mitotic cell cycle","type":"related"},{"name":"normal nucleotide-excision repair during cellular response to UV during vegetative growth","type":"exact"},{"name":"normal nucleotide-excision repair during cellular response to ultraviolet light","type":"exact"}],"termid":"FYPO:0003174"}


id: PBO:0067687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5.8S ribosomal 4","termid":"PBO:0067687"}


id: PBO:0054290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1681","termid":"PBO:0054290"}


id: GO:0099579
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A G protein-coupled neurotransmitter receptor activity, occurring in the postsynaptic membrane, involved in regulation of postsynaptic membrane potential.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled neurotransmitter receptor activity","termid":"GO:0099528"},{"relation_name":"is_a","term_name":"neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential","termid":"GO:0099529"},{"relation_name":"is_a","term_name":"G protein-coupled receptor activity involved in regulation of postsynaptic membrane potential","termid":"GO:0099530"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"G protein-coupled neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential","synonyms":[{"name":"G-protein coupled neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential","type":"exact"}],"termid":"GO:0099579"}


id: GO:0071374
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a parathyroid hormone stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to hormone stimulus","termid":"GO:0032870"},{"relation_name":"is_a","term_name":"response to parathyroid hormone","termid":"GO:0071107"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to parathyroid hormone stimulus","termid":"GO:0071374"}


id: PBO:0038465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily A member 4","termid":"PBO:0038465"}


id: GO:0005559
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete ribozyme (obsolete GO:0005559)","synonyms":[{"name":"ribozyme","type":"exact"}],"termid":"GO:0005559"}


id: PBO:0046078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4A1 pseudogene 3","termid":"PBO:0046078"}


id: PBO:0035960
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_spatial_extent_of_double-strand_break_processing","termid":"PBO:0035960"}


id: PBO:0006178
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-requires_direct_regulator","termid":"PBO:0006178"}


id: GO:0018572
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3,5-dichlorocatechol + O2 = 2 H+ + 2,4-dichloro-cis,cis-muconate.","definition_xrefs":["UM-BBD_reactionID:r0276"],"gene_count":0,"genotype_count":0,"name":"obsolete 3,5-dichlorocatechol 1,2-dioxygenase activity (obsolete GO:0018572)","termid":"GO:0018572"}


id: PBO:0053305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIN28A pseudogene 2","termid":"PBO:0053305"}


id: GO:0032731
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-1 beta production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of interleukin-1 beta production","termid":"GO:0032651"},{"relation_name":"is_a","term_name":"positive regulation of interleukin-1 production","termid":"GO:0032732"},{"relation_name":"positively_regulates","term_name":"interleukin-1 beta production","termid":"GO:0032611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of interleukin-1 beta production","secondary_identifiers":["GO:0050725","GO:0050718"],"synonyms":[{"name":"activation of interleukin-1 beta production","type":"narrow"},{"name":"positive regulation of IL-1 beta production","type":"exact"},{"name":"positive regulation of interleukin-1 beta biosynthetic process","type":"narrow"},{"name":"positive regulation of interleukin-1 beta secretion","type":"narrow"},{"name":"stimulation of interleukin-1 beta production","type":"narrow"},{"name":"up regulation of interleukin-1 beta production","type":"exact"},{"name":"up-regulation of interleukin-1 beta production","type":"exact"},{"name":"upregulation of interleukin-1 beta production","type":"exact"}],"termid":"GO:0032731"}


id: MOD:00800
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue, an L-histidine residue, homocitric acid and a one-vanadium seven-iron nine-sulfur cluster to L-cysteinyl-L-histidino-homocitryl vanadium heptairon nonasulfide.","definition_xrefs":["PubMed:2345152","RESID:AA0393"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron-sulfur cluster containing modification","termid":"MOD:00739"},{"relation_name":"is_a","term_name":"vanadium containing modified residue","termid":"MOD:00772"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-cysteine residue","termid":"MOD:02067"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-histidine residue","termid":"MOD:02070"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-cysteinyl-L-histidino-homocitryl vanadium heptairon nonasulfide","synonyms":[{"name":"CysHis-[V7Fe9S]","type":"exact"},{"name":"L-cysteinyl-L-histidino-homocitryl vanadium heptairon nonasulfide carbide","type":"exact"},{"name":"nitrogenase iron-vanadium cofactor","type":"exact"}],"termid":"MOD:00800"}


id: GO:1903634
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of leucine-tRNA ligase activity.","definition_xrefs":["GO_REF:0000059","GOC:TermGenie","PMID:2280766"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of ligase activity","termid":"GO:0051352"},{"relation_name":"is_a","term_name":"regulation of aminoacyl-tRNA ligase activity","termid":"GO:1903630"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of leucine-tRNA ligase activity","synonyms":[{"name":"down regulation of L-leucine:tRNALeu ligase (AMP-forming)","type":"exact"},{"name":"down regulation of leucine translase activity","type":"exact"},{"name":"down regulation of leucine-tRNA ligase activity","type":"exact"},{"name":"down regulation of leucine-tRNA synthetase activity","type":"exact"},{"name":"down regulation of leucyl-tRNA synthetase activity","type":"exact"},{"name":"down regulation of leucyl-transfer RNA synthetase activity","type":"exact"},{"name":"down regulation of leucyl-transfer ribonucleate synthetase activity","type":"exact"},{"name":"down regulation of leucyl-transfer ribonucleic acid synthetase activity","type":"exact"},{"name":"down-regulation of L-leucine:tRNALeu ligase (AMP-forming)","type":"exact"},{"name":"down-regulation of leucine translase activity","type":"exact"},{"name":"down-regulation of leucine-tRNA ligase activity","type":"exact"},{"name":"down-regulation of leucine-tRNA synthetase activity","type":"exact"},{"name":"down-regulation of leucyl-tRNA synthetase activity","type":"exact"},{"name":"down-regulation of leucyl-transfer RNA synthetase activity","type":"exact"},{"name":"down-regulation of leucyl-transfer ribonucleate synthetase activity","type":"exact"},{"name":"down-regulation of leucyl-transfer ribonucleic acid synthetase activity","type":"exact"},{"name":"downregulation of L-leucine:tRNALeu ligase (AMP-forming)","type":"exact"},{"name":"downregulation of leucine translase activity","type":"exact"},{"name":"downregulation of leucine-tRNA ligase activity","type":"exact"},{"name":"downregulation of leucine-tRNA synthetase activity","type":"exact"},{"name":"downregulation of leucyl-tRNA synthetase activity","type":"exact"},{"name":"downregulation of leucyl-transfer RNA synthetase activity","type":"exact"},{"name":"downregulation of leucyl-transfer ribonucleate synthetase activity","type":"exact"},{"name":"downregulation of leucyl-transfer ribonucleic acid synthetase activity","type":"exact"},{"name":"inhibition of L-leucine:tRNALeu ligase (AMP-forming)","type":"narrow"},{"name":"inhibition of leucine translase activity","type":"narrow"},{"name":"inhibition of leucine-tRNA ligase activity","type":"narrow"},{"name":"inhibition of leucine-tRNA synthetase activity","type":"narrow"},{"name":"inhibition of leucyl-tRNA synthetase activity","type":"narrow"},{"name":"inhibition of leucyl-transfer RNA synthetase activity","type":"narrow"},{"name":"inhibition of leucyl-transfer ribonucleate synthetase activity","type":"narrow"},{"name":"inhibition of leucyl-transfer ribonucleic acid synthetase activity","type":"narrow"},{"name":"negative regulation of L-leucine:tRNALeu ligase (AMP-forming)","type":"exact"},{"name":"negative regulation of leucine translase activity","type":"exact"},{"name":"negative regulation of leucine-tRNA synthetase activity","type":"exact"},{"name":"negative regulation of leucyl-tRNA synthetase activity","type":"exact"},{"name":"negative regulation of leucyl-transfer RNA synthetase activity","type":"exact"},{"name":"negative regulation of leucyl-transfer ribonucleate synthetase activity","type":"exact"},{"name":"negative regulation of leucyl-transfer ribonucleic acid synthetase activity","type":"exact"}],"termid":"GO:1903634"}


id: GO:1900178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of aflatoxin biosynthetic process.","definition_xrefs":["GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular biosynthetic process","termid":"GO:0031327"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"regulation of aflatoxin biosynthetic process","termid":"GO:1900177"},{"relation_name":"is_a","term_name":"negative regulation of secondary metabolite biosynthetic process","termid":"GO:1900377"},{"relation_name":"negatively_regulates","term_name":"aflatoxin biosynthetic process","termid":"GO:0045122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0019748"],"is_obsolete":false,"name":"negative regulation of aflatoxin biosynthetic process","synonyms":[{"name":"down regulation of aflatoxin anabolism","type":"exact"},{"name":"down regulation of aflatoxin biosynthesis","type":"exact"},{"name":"down regulation of aflatoxin biosynthetic process","type":"exact"},{"name":"down regulation of aflatoxin formation","type":"exact"},{"name":"down regulation of aflatoxin synthesis","type":"exact"},{"name":"down-regulation of aflatoxin anabolism","type":"exact"},{"name":"down-regulation of aflatoxin biosynthesis","type":"exact"},{"name":"down-regulation of aflatoxin biosynthetic process","type":"exact"},{"name":"down-regulation of aflatoxin formation","type":"exact"},{"name":"down-regulation of aflatoxin synthesis","type":"exact"},{"name":"downregulation of aflatoxin anabolism","type":"exact"},{"name":"downregulation of aflatoxin biosynthesis","type":"exact"},{"name":"downregulation of aflatoxin biosynthetic process","type":"exact"},{"name":"downregulation of aflatoxin formation","type":"exact"},{"name":"downregulation of aflatoxin synthesis","type":"exact"},{"name":"inhibition of aflatoxin anabolism","type":"narrow"},{"name":"inhibition of aflatoxin biosynthesis","type":"narrow"},{"name":"inhibition of aflatoxin biosynthetic process","type":"narrow"},{"name":"inhibition of aflatoxin formation","type":"narrow"},{"name":"inhibition of aflatoxin synthesis","type":"narrow"},{"name":"negative regulation of aflatoxin anabolism","type":"exact"},{"name":"negative regulation of aflatoxin biosynthesis","type":"exact"},{"name":"negative regulation of aflatoxin formation","type":"exact"},{"name":"negative regulation of aflatoxin synthesis","type":"exact"}],"termid":"GO:1900178"}


id: PBO:0056508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannose-binding lectin family member 3, pseudogene","termid":"PBO:0056508"}


id: GO:0015652
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: quaternary ammonium group(out) + H+(out) = quaternary ammonium group(in) + H+(in).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"},{"relation_name":"is_a","term_name":"quaternary ammonium group transmembrane transporter activity","termid":"GO:0015651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"quaternary ammonium group:proton symporter activity","synonyms":[{"name":"quaternary ammonium group:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015652"}


id: GO:0072293
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the tubules arranged along the proximal/distal axis of the metanephric nephron acquire their identity.","definition_xrefs":["GOC:mtg_kidney_jan10","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of nephron tubule identity","termid":"GO:0072081"},{"relation_name":"is_a","term_name":"pattern specification involved in metanephros development","termid":"GO:0072268"},{"relation_name":"part_of","term_name":"proximal/distal pattern formation involved in metanephric nephron development","termid":"GO:0072272"},{"relation_name":"part_of","term_name":"metanephric nephron tubule formation","termid":"GO:0072289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of metanephric nephron tubule identity","termid":"GO:0072293"}


id: SO:0000344
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Region of a transcript that regulates splicing.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"splicing_regulatory_region","termid":"SO:0001056"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splice_enhancer","synonyms":[{"name":"splice enhancer","type":"exact"}],"termid":"SO:0000344"}


id: PBO:0085823
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; expression is regulated by phosphate levels; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and vacuole; protein abundance increases in response to DNA replication stress","termid":"PBO:0085823"}


id: PBO:0074335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1","termid":"PBO:0074335"}


id: PBO:0003163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein (predicted), DUF1773 family protein 1","termid":"PBO:0003163"}


id: GO:0000812
data:
  {"annotated_genes":["SJAG_02466","SJAG_03694","SJAG_03145","SJAG_02385","SJAG_02798","SJAG_01465","SJAG_04097","SJAG_02990","SJAG_02571","SJAG_02500","SJAG_04596","SJAG_03579","SJAG_03036","SJAG_05192","SJAG_05282","SJAG_04355"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[84122,86808,88471,92753,94337,95058,97070,97785,103960,105143,108316,109225,109392,110780,113324,113504],"is_not":false,"summary":null,"term":"GO:0000812"}]},"cv_name":"cellular_component","definition":"A multisubunit protein complex that is involved in chromatin remodeling. It is required for the incorporation of the histone variant H2AZ into chromatin. In S. cerevisiae, the complex contains Swr1p, a Swi2/Snf2-related ATPase, and 12 additional subunits.","definition_xrefs":["GOC:rb","PMID:14690608","PMID:14645854","PMID:19355820"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone deacetylase complex","termid":"GO:0000118"},{"relation_name":"is_a","term_name":"INO80-type complex","termid":"GO:0097346"},{"relation_name":"part_of","term_name":"nuclear chromosome","termid":"GO:0000228"}],"gene_count":16,"genes_by_uniquename":{"SJAG_01465":null,"SJAG_02385":null,"SJAG_02466":null,"SJAG_02500":null,"SJAG_02571":null,"SJAG_02798":null,"SJAG_02990":null,"SJAG_03036":null,"SJAG_03145":null,"SJAG_03579":null,"SJAG_03694":null,"SJAG_04097":null,"SJAG_04355":null,"SJAG_04596":null,"SJAG_05192":null,"SJAG_05282":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991","GO:0005694","GO:0005654"],"is_obsolete":false,"name":"Swr1 complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"SWR-C","type":"exact"}],"termid":"GO:0000812","terms_by_termid":{"GO:0000812":null}}


id: PBO:0002171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DASH complex subunit Spc34","termid":"PBO:0002171"}


id: PBO:0062067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 3 subfamily A member 5 pseudogene","termid":"PBO:0062067"}


id: PBO:0078216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 7-9","termid":"PBO:0078216"}


id: GO:0004044
data:
  {"annotated_genes":["SJAG_01661"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[93912],"is_not":false,"summary":null,"term":"GO:0004044"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-phospho-beta-D-ribosylamine + L-glutamate + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + L-glutamine + H2O.","definition_xrefs":["RHEA:14905","EC:2.4.2.14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01661":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"amidophosphoribosyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R01072","MetaCyc:PRPPAMIDOTRANS-RXN","Reactome:R-HSA-73815"],"synonyms":[{"name":"5'-phosphoribosylpyrophosphate amidotransferase activity","type":"related"},{"name":"5-phosphoribosyl-1-pyrophosphate amidotransferase activity","type":"related"},{"name":"5-phosphoribosylamine:diphosphate phospho-alpha-D-ribosyltransferase (glutamate-amidating)","type":"related"},{"name":"5-phosphororibosyl-1-pyrophosphate amidotransferase activity","type":"related"},{"name":"alpha-5-phosphoribosyl-1-pyrophosphate amidotransferase activity","type":"related"},{"name":"glutamine 5-phosphoribosylpyrophosphate amidotransferase activity","type":"related"},{"name":"glutamine phosphoribosyldiphosphate amidotransferase activity","type":"related"},{"name":"glutamine phosphoribosylpyrophosphate amidotransferase activity","type":"related"},{"name":"glutamine ribosylpyrophosphate 5-phosphate amidotransferase activity","type":"related"},{"name":"phosphoribose pyrophosphate amidotransferase activity","type":"related"},{"name":"phosphoribosyl pyrophosphate amidotransferase activity","type":"related"},{"name":"phosphoribosyldiphosphate 5-amidotransferase activity","type":"related"},{"name":"phosphoribosylpyrophosphate glutamyl amidotransferase activity","type":"related"}],"termid":"GO:0004044","terms_by_termid":{"GO:0004044":null}}


id: GO:0015976
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbon sources and then activates genes to scavenge the last traces of the primary carbon source and to transport and metabolize alternative carbon sources such as carbon dioxide or carbonic acid. The utilization process begins when the cell or organism detects carbon levels, includes the activation of genes whose products detect, transport or metabolize carbon-containing substances, and ends when carbon is incorporated into the cell or organism's metabolism.","definition_xrefs":["GOC:mlg","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to nutrient levels","termid":"GO:0031667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"carbon utilization","secondary_identifiers":["Wikipedia:Heterotroph","GO:0015978"],"synonyms":[{"name":"carbon utilization by utilization of organic compounds","type":"exact"},{"name":"heterotrophy","type":"exact"}],"termid":"GO:0015976"}


id: PBO:0056429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARK2 pseudogene 2","termid":"PBO:0056429"}


id: GO:0097299
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile, and contributing to plant-type hypersensitive response, the rapid, localized death of plant cells in response to invasion by a pathogen.","definition_xrefs":["GOC:mtg_apoptosis"],"gene_count":0,"genotype_count":0,"name":"obsolete cysteine-type endopeptidase activity involved in plant-type hypersensitive response (obsolete GO:0097299)","synonyms":[{"name":"metacaspase activity involved in plant-type hypersensitive response","type":"narrow"}],"termid":"GO:0097299"}


id: PBO:0076896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 50","termid":"PBO:0076896"}


id: PBO:0026745
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_phosphorylation_during_glucose_starvation","termid":"PBO:0026745"}


id: PBO:0085065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-essential subunit of the NuA4 acetyltransferase complex; Esa1p-associated factor; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0085065"}


id: SO:0002135
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that rearranges at the DNA level and codes the diversity region of the variable domain of aT-cell receptor gene.","definition_xrefs":["IGMT:http://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php","GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T_cell_receptor_gene","termid":"SO:0002133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TR_D_Gene","synonyms":[{"name":"T_cell_receptor_D_gene","type":"exact"}],"termid":"SO:0002135"}


id: PBO:0062259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily D member 15 pseudogene","termid":"PBO:0062259"}


id: PBO:0048340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 51","termid":"PBO:0048340"}


id: GO:0060851
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands that contributes to the commitment of a venous endothelial cell to a lymphatic endothelial cell fate.","definition_xrefs":["GOC:dph","GOC:sdb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular endothelial growth factor receptor signaling pathway","termid":"GO:0048010"},{"relation_name":"part_of","term_name":"lymphatic endothelial cell fate commitment","termid":"GO:0060838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"vascular endothelial growth factor receptor signaling pathway involved in lymphatic endothelial cell fate commitment","synonyms":[{"name":"vascular endothelial growth factor receptor signalling pathway involved in lymphatic endothelial cell fate commitment","type":"exact"}],"termid":"GO:0060851"}


id: PBO:0031191
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_wall_thickness_during_vegetative_growth","termid":"PBO:0031191"}


id: GO:0098829
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Uptake of folic into the blood by absorption from the small intestine.","definition_xrefs":["GOC:BHF","GOC:dos","GOC:hal","PMID:19762432"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal absorption","termid":"GO:0050892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intestinal folate absorption","termid":"GO:0098829"}


id: SO:0000738
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"DNA belonging to the nuclear genome of cell.","direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_location","termid":"SO:0000735"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear_sequence","synonyms":[{"name":"nuclear sequence","type":"exact"}],"termid":"SO:0000738"}


id: PR:Q9UTS5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- zas1 gene.","definition_xrefs":["UniProtKB:Q9UTS5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein zas1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1198.04c","synonyms":[{"name":"Spom972h-zas1","type":"exact"}],"termid":"PR:Q9UTS5"}


id: GO:0018588
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: tri-n-butyltin + O2 + 2 H+ + 2 e- = H2O + beta-hydroxybutyldibutyltin.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete tri-n-butyltin dioxygenase activity (obsolete GO:0018588)","synonyms":[{"name":"TBT dioxygenase activity","type":"exact"}],"termid":"GO:0018588"}


id: PBO:0029556
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_polynucleotide_3'-phosphatase_activity","termid":"PBO:0029556"}


id: GO:2001230
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of response to gamma radiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of response to stimulus","termid":"GO:0048584"},{"relation_name":"is_a","term_name":"regulation of response to gamma radiation","termid":"GO:2001228"},{"relation_name":"positively_regulates","term_name":"response to gamma radiation","termid":"GO:0010332"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to gamma radiation","synonyms":[{"name":"positive regulation of response to gamma ray","type":"related"},{"name":"positive regulation of response to gamma-ray photon","type":"related"}],"termid":"GO:2001230"}


id: GO:0002715
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of natural killer cell mediated immunity.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lymphocyte mediated immunity","termid":"GO:0002706"},{"relation_name":"is_a","term_name":"regulation of innate immune response","termid":"GO:0045088"},{"relation_name":"regulates","term_name":"natural killer cell mediated immunity","termid":"GO:0002228"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of natural killer cell mediated immunity","secondary_identifiers":["GO:0045845"],"synonyms":[{"name":"regulation of NK cell mediated immunity","type":"exact"},{"name":"regulation of natural killer cell activity","type":"related"}],"termid":"GO:0002715"}


id: FYPO:0007542
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of double-stranded DNA binding by a gene product is normal (i.e. indistinguishable from wild type). The relevant gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal DNA binding","termid":"FYPO:0000655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000653"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000653","FYPO:0000652"],"is_obsolete":false,"name":"normal double-stranded DNA binding","synonyms":[{"name":"normal dsDNA binding","type":"exact"}],"termid":"FYPO:0007542"}


id: GO:1902032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any regulation of transcription from RNA polymerase II promoter that is involved in response to osmotic stress.","definition_xrefs":["PMID:18636113","GOC:TermGenie","GOC:kmv"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter involved in response to osmotic stress (obsolete GO:1902032)","synonyms":[{"name":"global transcription regulation from Pol II promoter involved in osmotic response","type":"related"},{"name":"global transcription regulation from Pol II promoter involved in osmotic stress response","type":"related"},{"name":"global transcription regulation from Pol II promoter involved in response to osmotic stress","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter involved in osmotic response","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter involved in osmotic stress response","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter involved in response to osmotic stress","type":"related"},{"name":"regulation of global transcription from Pol II promoter involved in osmotic response","type":"related"},{"name":"regulation of global transcription from Pol II promoter involved in osmotic stress response","type":"related"},{"name":"regulation of global transcription from Pol II promoter involved in response to osmotic stress","type":"related"},{"name":"regulation of transcription from Pol II promoter involved in osmotic response","type":"exact"},{"name":"regulation of transcription from Pol II promoter involved in osmotic stress response","type":"exact"},{"name":"regulation of transcription from Pol II promoter involved in response to osmotic stress","type":"exact"},{"name":"regulation of transcription from RNA polymerase II promoter involved in osmotic response","type":"exact"},{"name":"regulation of transcription from RNA polymerase II promoter involved in osmotic stress response","type":"exact"},{"name":"regulation of transcription from RNA polymerase II promoter involved in response to osmotic stress","type":"exact"},{"name":"regulation of transcription from RNA polymerase II promoter, global involved in osmotic response","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global involved in osmotic stress response","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global involved in response to osmotic stress","type":"related"}],"termid":"GO:1902032"}


id: PBO:0086744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; possibly involved in zinc homeostasis; Bdf1p-dependent transcription induced by salt stress; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus","termid":"PBO:0086744"}


id: PBO:0047756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"folate hydrolase 1","termid":"PBO:0047756"}


id: PBO:0003463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJ domain protein Mas5 (predicted)","termid":"PBO:0003463"}


id: GO:0023009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a signal causes activation of T cell receptor signaling.","definition_xrefs":["GOC:mtg_signal"],"gene_count":0,"genotype_count":0,"name":"obsolete initiation of T cell receptor signaling (obsolete GO:0023009)","synonyms":[{"name":"initiation of T cell receptor signaling","type":"exact"},{"name":"initiation of T cell receptor signalling","type":"exact"}],"termid":"GO:0023009"}


id: GO:0033815
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3 malonyl-CoA + benzoyl-CoA = 4 CoA + 3,5-dihydroxybiphenyl + 4 CO2.","definition_xrefs":["EC:2.3.1.177"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016746","GO:0016740"],"is_obsolete":false,"name":"biphenyl synthase activity","secondary_identifiers":["MetaCyc:2.3.1.177-RXN","RHEA:22292"],"synonyms":[{"name":"BIS","type":"related"},{"name":"malonyl-CoA:benzoyl-CoA malonyltransferase activity","type":"related"}],"termid":"GO:0033815"}


id: GO:0071502
data:
  {"annotated_genes":["SJAG_02381"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86925],"is_not":false,"summary":null,"term":"GO:0071502"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to temperature stimulus","termid":"GO:0009266"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02381":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to temperature stimulus","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cellular response to thermal stimulus","type":"exact"}],"termid":"GO:0071502","terms_by_termid":{"GO:0071502":null}}


id: PBO:0055258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2685","termid":"PBO:0055258"}


id: PBO:0085812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; exhibits genetic interactions with Rtr1p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YDR066C is not an essential gene; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress; RTR2 has a paralog, RTR1, that arose from the whole genome duplication","termid":"PBO:0085812"}


id: PBO:0031749
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K9_methylation","termid":"PBO:0031749"}


id: PBO:0054059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1402","termid":"PBO:0054059"}


id: PBO:0091725
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"this gene was called cdc2L (cdc2 left) in PMID:16453669, name not added as potentially misleading","termid":"PBO:0091725"}


id: SO:1001194
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1001194 alternatively_spliced_gene_encoding_greater_than_1_polypeptide_coding_regions_overlapping (obsolete SO:1001194)","termid":"SO:1001194"}


id: MOD:00738
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes an iron atom or a cluster containing iron for hydrogen atoms, or that coordinates an iron ion.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal or metal cluster containing modified residue","termid":"MOD:00698"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron containing modified residue","synonyms":[{"name":"FeRes","type":"exact"}],"termid":"MOD:00738"}


id: PBO:0001529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDP dissociation inhibitor Gdi1 (predicted)","termid":"PBO:0001529"}


id: GO:0015638
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a microcin from one side of a membrane to the other.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amide transmembrane transporter activity","termid":"GO:0042887"},{"relation_name":"is_a","term_name":"xenobiotic transmembrane transporter activity","termid":"GO:0042910"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"microcin transmembrane transporter activity","synonyms":[{"name":"microcin uptake permease activity","type":"exact"}],"termid":"GO:0015638"}


id: PBO:0055187
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2611","termid":"PBO:0055187"}


id: PBO:0034467
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_centromere_during_vegetative_growth","termid":"PBO:0034467"}


id: PBO:0017772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inorganic phosphate transmembrane transporter (predicted)","termid":"PBO:0017772"}


id: GO:0034579
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: fumarate + n-hexane = (1-methylpentyl)succinate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete (1-methylpentyl)succinate synthase activity (obsolete GO:0034579)","termid":"GO:0034579"}


id: PBO:0038354
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_effector_activity","termid":"PBO:0038354"}


id: PBO:0080663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WAP four-disulfide core domain 9","termid":"PBO:0080663"}


id: PBO:0003681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein trafficking protein Pga2 (predicted)","termid":"PBO:0003681"}


id: PBO:0086201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that associates with mitochondrial ribosome; likely functions in cristae junction formation; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies","termid":"PBO:0086201"}


id: GO:0032408
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a MutSbeta mismatch repair complex.","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatch repair complex binding","termid":"GO:0032404"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"MutSbeta complex binding","termid":"GO:0032408"}


id: PBO:0089572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF3e","termid":"PBO:0089572"}


id: PBO:0028584
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_cell_during_stationary_phase","termid":"PBO:0028584"}


id: PBO:0054095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1448","termid":"PBO:0054095"}


id: PBO:0000524
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STErile","termid":"PBO:0000524"}


id: PBO:0045188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJB6 pseudogene 1","termid":"PBO:0045188"}


id: PBO:0064244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase D family member 3","termid":"PBO:0064244"}


id: PBO:0066312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBPJ pseudogene 6","termid":"PBO:0066312"}


id: PBO:0059130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MPHOSPH6 pseudogene 1","termid":"PBO:0059130"}


id: PBO:0059489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MSRB3 antisense RNA 1","termid":"PBO:0059489"}


id: PBO:0056446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARK2 pseudogene 19","termid":"PBO:0056446"}


id: PBO:0065248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 20A","termid":"PBO:0065248"}


id: PBO:0027884
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_H4-K20_methylation","termid":"PBO:0027884"}


id: GO:0000319
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of sulfite ions from one side of a membrane to the other.","definition_xrefs":["GOC:as"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic anion transmembrane transporter activity","termid":"GO:0015103"},{"relation_name":"is_a","term_name":"sulfur compound transmembrane transporter activity","termid":"GO:1901682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"sulfite transmembrane transporter activity","synonyms":[{"name":"sulphite transporter activity","type":"exact"}],"termid":"GO:0000319"}


id: PBO:0003048
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.16.1.7","termid":"PBO:0003048"}


id: PBO:0043514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CNTNAP3 pseudogene 9","termid":"PBO:0043514"}


id: PBO:0043603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collectin subfamily member 12","termid":"PBO:0043603"}


id: PBO:0052711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 3","termid":"PBO:0052711"}


id: GO:0060844
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of a cell to an arterial endothelial cell fate and its capacity to differentiate into an arterial endothelial cell.","definition_xrefs":["GOC:tb","GOC:dph","GOC:sdb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"blood vessel endothelial cell fate commitment","termid":"GO:0060846"},{"relation_name":"part_of","term_name":"arterial endothelial cell differentiation","termid":"GO:0060842"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"arterial endothelial cell fate commitment","termid":"GO:0060844"}


id: GO:0048672
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of collateral sprouting.","definition_xrefs":["GOC:dph","GOC:dgh","GOC:jid","GOC:lm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell growth","termid":"GO:0030307"},{"relation_name":"is_a","term_name":"positive regulation of developmental growth","termid":"GO:0048639"},{"relation_name":"is_a","term_name":"regulation of collateral sprouting","termid":"GO:0048670"},{"relation_name":"is_a","term_name":"positive regulation of axonogenesis","termid":"GO:0050772"},{"relation_name":"positively_regulates","term_name":"collateral sprouting","termid":"GO:0048668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of collateral sprouting","synonyms":[{"name":"activation of collateral sprouting","type":"narrow"},{"name":"stimulation of collateral sprouting","type":"narrow"},{"name":"up regulation of collateral sprouting","type":"exact"},{"name":"up-regulation of collateral sprouting","type":"exact"},{"name":"upregulation of collateral sprouting","type":"exact"}],"termid":"GO:0048672"}


id: GO:0051064
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: dTTP + thioredoxin disulfide + H2O = TTP + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin.","definition_xrefs":["MetaCyc:1.17.4.2-RXN"],"gene_count":0,"genotype_count":0,"name":"obsolete TTP reductase activity (obsolete GO:0051064)","synonyms":[{"name":"TTP reduction","type":"related"}],"termid":"GO:0051064"}


id: PBO:0045848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 38","termid":"PBO:0045848"}


id: PR:P50514
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An argininosuccinate lyase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"argininosuccinate lyase ArgX (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1539.03c","secondary_identifiers":["UniProtKB:P50514"],"synonyms":[{"name":"ASAL (Schizosaccharomyces pombe 972h-)","type":"broad"},{"name":"Arginosuccinase (Schizosaccharomyces pombe 972h-)","type":"broad"},{"name":"SPBC1539.03c","type":"related"},{"name":"Spom972h-ASL","type":"exact"}],"termid":"PR:P50514"}


id: PBO:0004461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"upstream activation factor complex subunit Acr1","termid":"PBO:0004461"}


id: GO:0018500
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: trans-9R,10R-dihydrodiolphenanthrene + NAD+ = NADH + H+ + 9,10-dihydroxyphenanthrene.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete trans-9R,10R-dihydrodiolphenanthrene dehydrogenase activity (obsolete GO:0018500)","termid":"GO:0018500"}


id: PBO:0069203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 457, pseudogene","termid":"PBO:0069203"}


id: PBO:0047510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FERM domain containing kindlin 2","termid":"PBO:0047510"}


id: SO:0001763
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A physical quality which inheres to the variant by virtue of the number instances of the variant within a population.","definition_xrefs":["PMID:17597783","SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"variant_quality","termid":"SO:0001761"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"variant_frequency","synonyms":[{"name":"variant frequency","type":"exact"}],"termid":"SO:0001763"}


id: PBO:0068841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 79, pseudogene","termid":"PBO:0068841"}


id: PBO:0036402
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"not functionally complemented by A. thaliana COQ6","termid":"PBO:0036402"}


id: GO:0019638
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 6-hydroxycineole (6-hydroxy-1,8-epoxy-p-menthane), a hydrocarbon with the formula C10H18O2.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoterpenoid metabolic process","termid":"GO:0016098"},{"relation_name":"is_a","term_name":"epoxide metabolic process","termid":"GO:0097176"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"6-hydroxycineole metabolic process","synonyms":[{"name":"6-endo-hydroxycineole metabolic process","type":"exact"},{"name":"6-endo-hydroxycineole metabolism","type":"exact"},{"name":"6-hydroxycineole metabolism","type":"exact"},{"name":"hydroxycineol metabolic process","type":"exact"},{"name":"hydroxycineol metabolism","type":"exact"}],"termid":"GO:0019638"}


id: GO:0017018
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: phosphomyosin + H2O = myosin + phosphate.","definition_xrefs":["EC:3.1.3.16"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine phosphatase activity","termid":"GO:0004722"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0004721"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0004721","GO:0003674","GO:0016788","GO:0140096","GO:0003824"],"is_obsolete":false,"name":"myosin phosphatase activity","secondary_identifiers":["Reactome:R-HSA-445699","GO:0017019","Reactome:R-HSA-390593"],"synonyms":[{"name":"myosin phosphatase myosin binding","type":"related"},{"name":"myosin phosphatase, intrinsic catalyst activity","type":"exact"}],"termid":"GO:0017018"}


id: PBO:0076948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transforming growth factor alpha","termid":"PBO:0076948"}


id: GO:0007189
data:
  {"annotated_genes":["SJAG_02481","SJAG_00574","SJAG_01245","SJAG_01754","SJAG_01699","SJAG_04026","SJAG_00472","SJAG_04312","SJAG_02444","SJAG_02426","SJAG_02311","SJAG_00266","SJAG_03081","SJAG_01254"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96535,97940],"is_not":false,"summary":null,"term":"GO:0007189"},{"annotations":[102564,97941,105597,90333,105091,111590,112634,101977,102921],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010619"},{"annotations":[112453],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0106072"},{"annotations":[96537,88846,104048,88190,112454],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0110034"}]},"cv_name":"biological_process","definition":"A G protein-coupled receptor signaling pathway in which the signal is transmitted via the activation of adenylyl cyclase activity which results in an increase in the intracellular concentration of cyclic AMP (cAMP). This pathway is negatively regulated by phosphodiesterase, which cleaves cAMP and terminates the signaling.","definition_xrefs":["ISBN:0815316194","GOC:dph","GOC:mah","GOC:tb","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylate cyclase-modulating G protein-coupled receptor signaling pathway","termid":"GO:0007188"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_00472":null,"SJAG_00574":null,"SJAG_01245":null,"SJAG_01254":null,"SJAG_01699":null,"SJAG_01754":null,"SJAG_02311":null,"SJAG_02426":null,"SJAG_02444":null,"SJAG_02481":null,"SJAG_03081":null,"SJAG_04026":null,"SJAG_04312":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"adenylate cyclase-activating G protein-coupled receptor signaling pathway","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0010579","GO:0010580"],"synonyms":[{"name":"G protein signaling, adenylate cyclase activating pathway","type":"exact"},{"name":"G protein signaling, adenylyl cyclase activating pathway","type":"exact"},{"name":"G protein signalling, adenylate cyclase activating pathway","type":"exact"},{"name":"G protein signalling, adenylyl cyclase activating pathway","type":"exact"},{"name":"G-protein signaling, adenylate cyclase activating pathway","type":"exact"},{"name":"G-protein signaling, adenylyl cyclase activating pathway","type":"exact"},{"name":"G-protein signalling, adenylate cyclase activating pathway","type":"exact"},{"name":"G-protein signalling, adenylyl cyclase activating pathway","type":"exact"},{"name":"GPCR signaling pathway via activation of adenylate cyclase","type":"exact"},{"name":"GPCR signaling pathway via activation of adenylate cyclase activity","type":"exact"},{"name":"activation of adenylate cyclase activity by G-protein signaling pathway","type":"related"},{"name":"activation of adenylate cyclase activity involved in G-protein signaling","type":"related"},{"name":"adenylate cyclase-activating GPCR signaling pathway","type":"exact"},{"name":"positive regulation of adenylate cyclase activity by G-protein signaling pathway","type":"related"},{"name":"positive regulation of adenylate cyclase activity by G-protein signalling pathway","type":"related"},{"name":"positive regulation of adenylate cyclase activity involved in G-protein coupled receptor signaling pathway","type":"exact"}],"termid":"GO:0007189","terms_by_termid":{"GO:0007189":null,"GO:0010619":null,"GO:0106072":null,"GO:0110034":null}}


id: GO:0045623
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of T-helper cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune effector process","termid":"GO:0002698"},{"relation_name":"is_a","term_name":"negative regulation of CD4-positive, alpha-beta T cell differentiation","termid":"GO:0043371"},{"relation_name":"is_a","term_name":"regulation of T-helper cell differentiation","termid":"GO:0045622"},{"relation_name":"is_a","term_name":"negative regulation of immune response","termid":"GO:0050777"},{"relation_name":"negatively_regulates","term_name":"T-helper cell differentiation","termid":"GO:0042093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of T-helper cell differentiation","synonyms":[{"name":"down regulation of T-helper cell differentiation","type":"exact"},{"name":"down-regulation of T-helper cell differentiation","type":"exact"},{"name":"downregulation of T-helper cell differentiation","type":"exact"},{"name":"inhibition of T-helper cell differentiation","type":"narrow"},{"name":"negative regulation of T-helper cell development","type":"related"}],"termid":"GO:0045623"}


id: PBO:0070755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10 pseudogene 11","termid":"PBO:0070755"}


id: PBO:0017415
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-derived_into","termid":"PBO:0017415"}


id: MOD:01666
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that is produced by formation of an adduct with epicocconone.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epicocconone derivatized residue","synonyms":[{"name":"(6S,9aS)-6-(hydroxymethyl)-3-[(1Z,4E,6E,8E)-1-hydroxy-3-oxodeca-1,4,6,8-tetraen-1-yl]-9a-methyl-5,6-dihydro-2H-furo[3,2-g]isochromene-2,9(9aH)-dione","type":"exact"},{"name":"Deep Purple","type":"exact"},{"name":"LavaPurple","type":"exact"},{"name":"Lightning Fast","type":"exact"}],"termid":"MOD:01666"}


id: GO:0003260
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of a cardiac progenitor cell to form the heart field. Cardiac progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into cells of the heart. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration involved in heart formation","termid":"GO:0060974"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardioblast migration","termid":"GO:0003260"}


id: GO:1900526
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of phosphatidylserine biosynthetic process by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["PMID:8056324","GOC:dgf","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of phosphatidylserine biosynthetic process by negative regulation of transcription from RNA polymerase II promoter (obsolete GO:1900526)","synonyms":[{"name":"negative regulation of phosphatidylserine anabolism by negative regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of phosphatidylserine biosynthesis by negative regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of phosphatidylserine formation by negative regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of phosphatidylserine synthesis by negative regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:1900526"}


id: GO:1990342
data:
  {"annotated_genes":["SJAG_03745","SJAG_03844","SJAG_03916","SJAG_04768","SJAG_01067","SJAG_02621","SJAG_01601","SJAG_03664","SJAG_00796","SJAG_02382","SJAG_02622","SJAG_01867","SJAG_00961","SJAG_03982","SJAG_02119"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[83627,86901,87369,87959,88333,89540,92335,95212,108173,109360,112926,113794,114123,114144,114846],"is_not":false,"summary":null,"term":"GO:1990342"}]},"cv_name":"cellular_component","definition":"A region of facultative heterochromatin formed dynamically at specific loci in response to environmental signals, independently of RNAi.","definition_xrefs":["PMID:24210919","PMID:22144463"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterochromatin","termid":"GO:0000792"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00796":null,"SJAG_00961":null,"SJAG_01067":null,"SJAG_01601":null,"SJAG_01867":null,"SJAG_02119":null,"SJAG_02382":null,"SJAG_02621":null,"SJAG_02622":null,"SJAG_03664":null,"SJAG_03745":null,"SJAG_03844":null,"SJAG_03916":null,"SJAG_03982":null,"SJAG_04768":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005694"],"is_obsolete":false,"name":"heterochromatin island","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990342","terms_by_termid":{"GO:1990342":null}}


id: PBO:0069091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 338, pseudogene","termid":"PBO:0069091"}


id: PBO:0072797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spalt like transcription factor 4 pseudogene 3","termid":"PBO:0072797"}


id: PBO:0045935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongation factor like GTPase 1 pseudogene 2","termid":"PBO:0045935"}


id: GO:0010400
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving the side chains of the pectin, rhamnogalacturonan I.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhamnogalacturonan I metabolic process","termid":"GO:0010395"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975","GO:0071554"],"is_obsolete":false,"name":"rhamnogalacturonan I side chain metabolic process","synonyms":[{"name":"rhamnogalacturonan I side chain metabolism","type":"exact"}],"termid":"GO:0010400"}


id: SO:0000837
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of UTR.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA_region","termid":"SO:0000836"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UTR_region","synonyms":[{"name":"UTR region","type":"exact"}],"termid":"SO:0000837"}


id: PBO:0067632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 804, pseudogene","termid":"PBO:0067632"}


id: GO:0039572
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host STAT2 (signal transducer and activator of transcription-2) activity by stopping, preventing, or reducing the frequency, rate or extent of the introduction of a phosphate group to a tyrosine residue of a STAT2 protein. For example, the measles virus V protein inhibits tyrosine phosphorylation of STAT2, thereby preventing STAT2 activation.","definition_xrefs":["PMID:12804771"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host STAT2 activity by negative regulation of STAT2 tyrosine phosphorylation (obsolete GO:0039572)","synonyms":[{"name":"inhibition by virus of tyrosine phosphorylation of STAT2","type":"exact"}],"termid":"GO:0039572"}


id: PBO:0056249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAK16 homolog","termid":"PBO:0056249"}


id: PBO:0013068
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not functionally complement S. cerevisiae CDC28","termid":"PBO:0013068"}


id: FYPO:0003775
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of DNA recombination between cDNAs derived from transposon-encoded genes is decreased.","definition_xrefs":["PomBase:mah","PMID:10022921"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased DNA recombination","termid":"FYPO:0002712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000293","FYPO:0000002"],"is_obsolete":false,"name":"decreased transposon-derived cDNA recombination","synonyms":[{"name":"decreased recombination of transposon-derived cDNAs","type":"exact"},{"name":"decreased transposon-derived cDNA recombination frequency","type":"exact"},{"name":"decreased transposon-derived cDNA recombination rate","type":"related"},{"name":"reduced transposon-derived cDNA recombination","type":"exact"}],"termid":"FYPO:0003775"}


id: PBO:0085394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane Na+/Pi cotransporter; active in early growth phase; similar to phosphate transporters of Neurospora crassa; transcription regulated by inorganic phosphate concentrations and Pho4p; mutations in related human transporter genes hPit1 and hPit2 are associated with hyperphosphatemia-induced calcification of vascular tissue and familial idiopathic basal ganglia calcification","termid":"PBO:0085394"}


id: PBO:0039324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arachidonate 12-lipoxygenase pseudogene 1","termid":"PBO:0039324"}


id: GO:0003210
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of a cardiac atrium from unspecified parts. A cardiac atrium receives blood from a vein and pumps it to a cardiac ventricle.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac chamber formation","termid":"GO:0003207"},{"relation_name":"part_of","term_name":"cardiac atrium morphogenesis","termid":"GO:0003209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac atrium formation","termid":"GO:0003210"}


id: FYPO:0001398
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patches are localized to only one end of a cell following cell division; patches may localize to either the old or the new end. A population of cells with this phenotype has a 1:1 mix of cells with actin patches at the old end and cells with patches at the new end.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monopolar actin cortical patch localization during vegetative growth","termid":"FYPO:0001019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0004803"}],"interesting_parent_ids":["FYPO:0004803","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"monopolar actin cortical patch localization to either end","synonyms":[{"name":"monopolar F-actin patch localization to either end","type":"exact"},{"name":"monopolar actin cortical patch localisation to either end","type":"exact"},{"name":"monopolar actin cortical patch localization to either end during mitotic cell cycle","type":"related"},{"name":"monopolar actin cortical patch localization to either end during vegetative growth","type":"exact"},{"name":"monopolar actin cortical patch location at either end","type":"related"},{"name":"monopolar actin patch localization to either end","type":"exact"}],"termid":"FYPO:0001398"}


id: PR:O60106
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC14F5.10c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60106"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LON peptidase N-terminal domain and RING finger protein C14F5.10c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC14F5.10c","synonyms":[{"name":"Spom972h-SPBC14F5.10c","type":"exact"}],"termid":"PR:O60106"}


id: PBO:0077157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC/LysM-associated domain containing 2","termid":"PBO:0077157"}


id: PBO:0043655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPI coat complex subunit zeta 1","termid":"PBO:0043655"}


id: PR:O74345
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ucp3 gene.","definition_xrefs":["UniProtKB:O74345","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBA domain-containing protein 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21D10.05c","synonyms":[{"name":"Spom972h-ucp3","type":"exact"}],"termid":"PR:O74345"}


id: PBO:0072914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scavenger receptor class A member 3","termid":"PBO:0072914"}


id: PBO:0002354
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.1.3.12","termid":"PBO:0002354"}


id: PBO:0044021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"casein kinase 1 gamma 3","termid":"PBO:0044021"}


id: PBO:0064677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 13","termid":"PBO:0064677"}


id: PBO:0109620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain Y-linked 14 pseudogene","termid":"PBO:0109620"}


id: FYPO:0003223
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 9 of histone H3 is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone acetylation during vegetative growth","termid":"FYPO:0003221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal histone H3-K9 acetylation during vegetative growth","synonyms":[{"name":"normal histone H3 K9 acetylation during vegetative growth","type":"exact"},{"name":"normal histone H3-K9 acetylation during mitotic cell cycle","type":"related"},{"name":"normal histone H3K9 acetylation during vegetative growth","type":"exact"},{"name":"normal histone lysine H3 K9 acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0003223"}


id: PBO:0078600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 60 pseudogene 13","termid":"PBO:0078600"}


id: GO:0000407
data:
  {"annotated_genes":["SJAG_02414","SJAG_01283","SJAG_06309","SJAG_04655","SJAG_04991","SJAG_01783","SJAG_00114","SJAG_04860","SJAG_04963","SJAG_01876","SJAG_04502","SJAG_04219","SJAG_02640","SJAG_03136","SJAG_00115","SJAG_00763","SJAG_05017","SJAG_00645","SJAG_02441","SJAG_01135","SJAG_01561","SJAG_02699","SJAG_03100","SJAG_00059","SJAG_00724","SJAG_01382","SJAG_01274","SJAG_01251","SJAG_03851","SJAG_04232"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[83972,85739,87716,88715,90730,90916,93687,93705,93978,94701,95495,95790,96071,96377,99685,100907,104723,105845,106350,106740,107591,109719,111225,111286,113858],"is_not":false,"summary":null,"term":"GO:0000407"},{"annotations":[90728],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0097632"},{"annotations":[104724,93706,83973,71641,96378,107764,111226,96072,88716,94702,106351,100683,90917,111287,89003,106741,86201,95791,113859,99686],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034045"}]},"cv_name":"cellular_component","definition":"Punctate structures proximal to the endoplasmic reticulum which are the sites where the Atg machinery assembles upon autophagy induction.","definition_xrefs":["PMID:12048214","GOC:elh","PMID:11689437","PMID:12554655"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":30,"genes_by_uniquename":{"SJAG_00059":null,"SJAG_00114":null,"SJAG_00115":null,"SJAG_00645":null,"SJAG_00724":null,"SJAG_00763":null,"SJAG_01135":null,"SJAG_01251":null,"SJAG_01274":null,"SJAG_01283":null,"SJAG_01382":null,"SJAG_01561":null,"SJAG_01783":null,"SJAG_01876":null,"SJAG_02414":null,"SJAG_02441":null,"SJAG_02640":null,"SJAG_02699":null,"SJAG_03100":null,"SJAG_03136":null,"SJAG_03851":null,"SJAG_04219":null,"SJAG_04232":null,"SJAG_04502":null,"SJAG_04655":null,"SJAG_04860":null,"SJAG_04963":null,"SJAG_04991":null,"SJAG_05017":null,"SJAG_06309":null},"genotype_count":0,"in_subsets":["cc_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"phagophore assembly site","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"PAS","type":"exact"},{"name":"perivacuolar space","type":"narrow"},{"name":"pre-autophagosomal structure","type":"narrow"}],"termid":"GO:0000407","terms_by_termid":{"GO:0000407":null,"GO:0034045":null,"GO:0097632":null}}


id: PR:O36028
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC4F10.16c gene.","definition_xrefs":["UniProtKB:O36028","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipid-transporting ATPase C4F10.16c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4F10.16c","synonyms":[{"name":"Spom972h-SPAC4F10.16c","type":"exact"}],"termid":"PR:O36028"}


id: GO:0003179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the structure of a heart valve is generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"heart valve development","termid":"GO:0003170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"heart valve morphogenesis","synonyms":[{"name":"heart valve remodeling","type":"narrow"},{"name":"heart valve remodelling","type":"narrow"}],"termid":"GO:0003179"}


id: GO:0042496
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a diacylated bacterial lipopeptide stimulus is received by a cell and converted into a molecular signal. Diacylated bacterial lipoproteins are lipopeptides of bacterial origin containing a nonprotein moiety consisting of two acyl groups.","definition_xrefs":["PMID:2757794","GOC:add","PMID:12077222","PMID:12524386"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of bacterial lipopeptide","termid":"GO:0070340"},{"relation_name":"is_a","term_name":"response to diacyl bacterial lipopeptide","termid":"GO:0071724"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of diacyl bacterial lipopeptide","synonyms":[{"name":"detection of diacylated bacterial lipoprotein","type":"exact"},{"name":"perception of diacylated bacterial lipopeptide","type":"related"},{"name":"perception of diacylated bacterial lipoprotein","type":"related"}],"termid":"GO:0042496"}


id: GO:0071644
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of production of chemokine (C-C motif) ligand 4.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of chemokine production","termid":"GO:0032682"},{"relation_name":"is_a","term_name":"regulation of chemokine (C-C motif) ligand 4 production","termid":"GO:0071643"},{"relation_name":"negatively_regulates","term_name":"chemokine (C-C motif) ligand 4 production","termid":"GO:0071606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of chemokine (C-C motif) ligand 4 production","synonyms":[{"name":"negative regulation of CCL4 production","type":"exact"},{"name":"negative regulation of MIP-1b production","type":"exact"},{"name":"negative regulation of macrophage inflammatory protein production","type":"broad"}],"termid":"GO:0071644"}


id: PBO:0045796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EDIL3 divergent transcript","termid":"PBO:0045796"}


id: PR:O59829
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC965.09 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59829"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nitrilase C965.09 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC965.09","synonyms":[{"name":"Spom972h-SPCC965.09","type":"exact"}],"termid":"PR:O59829"}


id: SO:0001056
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A regulatory_region that modulates splicing.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcriptional_cis_regulatory_region","termid":"SO:0001055"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing_regulatory_region","synonyms":[{"name":"splicing regulatory region","type":"exact"}],"termid":"SO:0001056"}


id: GO:0006212
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleobase catabolic process","termid":"GO:0006208"},{"relation_name":"is_a","term_name":"uracil metabolic process","termid":"GO:0019860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"uracil catabolic process","synonyms":[{"name":"uracil breakdown","type":"exact"},{"name":"uracil catabolism","type":"exact"},{"name":"uracil degradation","type":"exact"}],"termid":"GO:0006212"}


id: GO:0034386
data:
  {"annotated_genes":["SJAG_03434"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87807],"is_not":false,"summary":null,"term":"GO:0034386"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-aminobutanoate + 2-oxoglutarate = succinate semialdehyde + L-glutamate.","definition_xrefs":["EC:2.6.1.19","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"4-aminobutyrate transaminase activity","termid":"GO:0003867"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03434":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016769"}],"interesting_parent_ids":["GO:0016769","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"4-aminobutyrate:2-oxoglutarate transaminase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:23352","MetaCyc:GABATRANSAM-RXN"],"synonyms":[{"name":"4-aminobutanoate:2-oxoglutarate aminotransferase activity","type":"related"},{"name":"4-aminobutyrate-2-ketoglutarate aminotransferase activity","type":"related"},{"name":"4-aminobutyrate-2-oxoglutarate aminotransferase activity","type":"related"},{"name":"4-aminobutyrate-2-oxoglutarate transaminase activity","type":"related"},{"name":"4-aminobutyric acid 2-ketoglutaric acid aminotransferase activity","type":"related"},{"name":"GABA-2-oxoglutarate aminotransferase activity","type":"related"},{"name":"GABA-2-oxoglutarate transaminase activity","type":"related"},{"name":"GABA-alpha-ketoglutarate aminotransferase activity","type":"related"},{"name":"GABA-alpha-ketoglutarate transaminase activity","type":"related"},{"name":"GABA-alpha-ketoglutaric acid transaminase activity","type":"related"},{"name":"GABA-alpha-oxoglutarate aminotransferase activity","type":"related"},{"name":"GABA-oxoglutarate aminotransferase activity","type":"related"},{"name":"GABA-oxoglutarate transaminase activity","type":"related"},{"name":"gamma-aminobutyrate-alpha-ketoglutarate aminotransferase activity","type":"related"},{"name":"gamma-aminobutyrate-alpha-ketoglutarate transaminase activity","type":"related"},{"name":"gamma-aminobutyrate:alpha-oxoglutarate aminotransferase activity","type":"related"},{"name":"gamma-aminobutyric acid-2-oxoglutarate transaminase activity","type":"related"},{"name":"gamma-aminobutyric acid-alpha-ketoglutarate transaminase activity","type":"related"},{"name":"gamma-aminobutyric acid-alpha-ketoglutaric acid aminotransferase activity","type":"related"}],"termid":"GO:0034386","terms_by_termid":{"GO:0034386":null}}


id: PBO:0030321
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_palmitoyl-CoA_ligase_activity","termid":"PBO:0030321"}


id: RO:HOM0000000
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Relation between biological objects that resemble or are related to each other sufficiently to warrant a comparison.","definition_xrefs":["BGEE:curator"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_similarity_relationship_with","synonyms":[{"name":"correspondence","type":"related"},{"name":"resemblance","type":"related"},{"name":"sameness","type":"exact"},{"name":"similar to","type":"exact"}],"termid":"RO:HOM0000000"}


id: PBO:0003951
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"target of APC complex","termid":"PBO:0003951"}


id: PBO:0054876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2290","termid":"PBO:0054876"}


id: GO:0043046
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The covalent transfer of a methyl group to C-5 of cytosine that contributes to the establishment of DNA methylation patterns in the gamete.","definition_xrefs":["GOC:go_curators","PMID:12138111"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA methylation involved in gamete generation (obsolete GO:0043046)","synonyms":[{"name":"de novo DNA methylation","type":"related"}],"termid":"GO:0043046"}


id: PBO:0058701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6829","termid":"PBO:0058701"}


id: GO:0060622
data:
  {"annotated_genes":["SJAG_04666","SJAG_04771"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83657,88519],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140748"}]},"cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of ascospore wall beta-glucan biosynthetic process, the chemical reactions and pathways resulting in the formation of beta-glucans, compounds composed of glucose residues linked by beta-D-glucosidic bonds, found in the walls of ascospores.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"is_a","term_name":"regulation of fungal-type cell wall beta-glucan biosynthetic process","termid":"GO:0090093"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"ascospore wall beta-glucan biosynthetic process","termid":"GO:0034412"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04666":null,"SJAG_04771":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0071554"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0071554","GO:0044085","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"regulation of ascospore wall beta-glucan biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0060622","terms_by_termid":{"GO:0140748":null}}


id: PBO:0071279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 2","termid":"PBO:0071279"}


id: GO:0060442
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the branching structure of the prostate gland is generated and organized. A branch is a division or offshoot from a main stem.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prostate gland epithelium morphogenesis","termid":"GO:0060740"},{"relation_name":"is_a","term_name":"morphogenesis of a branching epithelium","termid":"GO:0061138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"branching involved in prostate gland morphogenesis","synonyms":[{"name":"prostate branching","type":"related"},{"name":"prostate gland branching morphogenesis","type":"exact"}],"termid":"GO:0060442"}


id: GO:1901058
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving p-hydroxyphenyl lignin.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lignin metabolic process","termid":"GO:0009808"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"p-hydroxyphenyl lignin metabolic process","synonyms":[{"name":"H-lignin metabolic process","type":"exact"},{"name":"p-hydroxyphenyl lignin metabolism","type":"exact"}],"termid":"GO:1901058"}


id: PBO:0054740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2149","termid":"PBO:0054740"}


id: PBO:0005129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylyl cyclase-associated protein Cap1","termid":"PBO:0005129"}


id: PR:000027558
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H2A that is a translation product of the Schizosaccharomyces pombe 972h- hta1 gene or a 1:1 ortholog thereof.","definition_xrefs":["PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A-alpha","synonyms":[{"name":"H2A.1","type":"broad"},{"name":"hta1","type":"exact"}],"termid":"PR:000027558"}


id: PBO:0086876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative targeting subunit for type-1 protein phosphatase Glc7p; tethers Glc7p to Gsy2p glycogen synthase; PIG1 has a paralog, GAC1, that arose from the whole genome duplication","termid":"PBO:0086876"}


id: PBO:0088360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyridoxine-pyridoxal-pyridoxamine kinase","termid":"PBO:0088360"}


id: GO:0000739
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Facilitates the base-pairing of complementary single-stranded DNA.","definition_xrefs":["GOC:elh"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA strand annealing activity (obsolete GO:0000739)","synonyms":[{"name":"DNA strand annealing activity","type":"exact"}],"termid":"GO:0000739"}


id: FYPO:0003907
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to okadaic acid. Cells stop growing (and may die) at a concentration of okadaic acid that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0005447","FYPO:0002683","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to okadaic acid","synonyms":[{"name":"hypersensitive to okadaic acid","type":"exact"},{"name":"sensitive to okadaic acid during mitotic cell cycle","type":"related"},{"name":"sensitive to okadaic acid during vegetative growth","type":"exact"}],"termid":"FYPO:0003907"}


id: PBO:0015272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shuttle craft like transcriptional regulator/ ubiquitin-protein ligase E3 (predicted)","termid":"PBO:0015272"}


id: GO:0014879
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events by which an electrical stimulus is received and converted into a molecular signal. This occurs as part of the regulation of muscle adaptation.","definition_xrefs":["GOC:ef","GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to electrical stimulus involved in regulation of muscle adaptation","termid":"GO:0014878"},{"relation_name":"is_a","term_name":"detection of electrical stimulus","termid":"GO:0050981"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of electrical stimulus involved in regulation of muscle adaptation","termid":"GO:0014879"}


id: GO:0038019
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that results in the return of a Wnt receptor to an active state at the plasma membrane. An active state is when the receptor is ready to receive a Wnt signal. Internalized Wnt receptors can be recycled to the plasma membrane or sorted to lysosomes for protein degradation.","definition_xrefs":["GOC:bf","GOC:signaling","PMID:19643732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor recycling","termid":"GO:0001881"},{"relation_name":"part_of","term_name":"positive regulation of Wnt signaling pathway","termid":"GO:0030177"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Wnt receptor recycling","synonyms":[{"name":"Frizzled recycling","type":"narrow"}],"termid":"GO:0038019"}


id: PATO:0000194
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000194 spontaneous_activity (obsolete PATO:0000194)","termid":"PATO:0000194"}


id: GO:0045622
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of T-helper cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of immune effector process","termid":"GO:0002697"},{"relation_name":"is_a","term_name":"regulation of CD4-positive, alpha-beta T cell differentiation","termid":"GO:0043370"},{"relation_name":"is_a","term_name":"regulation of immune response","termid":"GO:0050776"},{"relation_name":"regulates","term_name":"T-helper cell differentiation","termid":"GO:0042093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of T-helper cell differentiation","synonyms":[{"name":"regulation of T-helper cell development","type":"related"}],"termid":"GO:0045622"}


id: GO:0140858
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a ubiquitin molecule to histone 2A at the lysine-15 residue.","definition_xrefs":["PMID:22980979","PMID:28624371"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2A ubiquitin ligase activity","termid":"GO:0141053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0004842"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0004842","GO:0016740","GO:0003674","GO:0003824","GO:0019787","GO:0140096","GO:0016746"],"is_obsolete":false,"name":"histone H2AK15 ubiquitin ligase activity","synonyms":[{"name":"histone ubiquitin ligase activity (H2A-K15 specific)","type":"exact"}],"termid":"GO:0140858"}


id: PBO:0074120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 30 member 5","termid":"PBO:0074120"}


id: GO:0048766
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a protrusion or bulge is formed at the site of plant root hair outgrowth.","definition_xrefs":["PMID:12468740","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell morphogenesis","termid":"GO:0000902"},{"relation_name":"part_of","term_name":"root hair cell differentiation","termid":"GO:0048765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"root hair initiation","termid":"GO:0048766"}


id: PBO:0004801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hexaprenyldihydroxybenzoate methyltransferase (predicted)","termid":"PBO:0004801"}


id: PBO:0061107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NLR family CARD domain containing 5","termid":"PBO:0061107"}


id: GO:2000857
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mineralocorticoid secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of corticosteroid hormone secretion","termid":"GO:2000848"},{"relation_name":"is_a","term_name":"regulation of mineralocorticoid secretion","termid":"GO:2000855"},{"relation_name":"positively_regulates","term_name":"mineralocorticoid secretion","termid":"GO:0035931"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of mineralocorticoid secretion","termid":"GO:2000857"}


id: GO:0003265
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cardioblast proliferation in the primary heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. In mammals the primary heart field gives rise to the left ventricle.","definition_xrefs":["GOC:mtg_heart","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cardioblast proliferation","termid":"GO:0003264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of primary heart field cardioblast proliferation","synonyms":[{"name":"regulation of FHF cardioblast proliferation","type":"exact"},{"name":"regulation of first heart field cardiac proliferation","type":"related"},{"name":"regulation of first heart field cardioblast proliferation","type":"exact"}],"termid":"GO:0003265"}


id: GO:0043150
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The synthesis of DNA that contributes to the process of double-strand break repair via homologous recombination.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA synthesis involved in DNA repair","termid":"GO:0000731"},{"relation_name":"part_of","term_name":"double-strand break repair via homologous recombination","termid":"GO:0000724"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006281"},{"rel_name":"part_of","termid":"GO:0006310"}],"interesting_parent_ids":["GO:0006259","GO:0008150","GO:0006310","GO:0006281"],"is_obsolete":false,"name":"DNA synthesis involved in double-strand break repair via homologous recombination","synonyms":[{"name":"DNA synthesis during double-strand break repair via homologous recombination","type":"related"}],"termid":"GO:0043150"}


id: PBO:0040492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATXN8 opposite strand lncRNA","termid":"PBO:0040492"}


id: PBO:0052546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"killer cell lectin like receptor A1, pseudogene","termid":"PBO:0052546"}


id: PBO:0060479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nanog homeobox pseudogene 1","termid":"PBO:0060479"}


id: GO:1990968
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a host organism modulates the frequency, rate or extent of a viral gene product binding to RNA.","definition_xrefs":["GOC:bf","PMID:25116364","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of molecular function","termid":"GO:0044092"},{"relation_name":"is_a","term_name":"modulation by host of viral molecular function","termid":"GO:0044868"},{"relation_name":"is_a","term_name":"regulation of RNA binding","termid":"GO:1905214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation by host of RNA binding by virus","synonyms":[{"name":"modulation by host of viral protein:RNA interaction","type":"related"}],"termid":"GO:1990968"}


id: SO:0001986
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A feature variant, where the alteration occurs upstream of the transcript TSS.","definition_xrefs":["EBI:gr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intergenic_variant","termid":"SO:0001628"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"upstream_transcript_variant","synonyms":[{"name":"upstream transcript variant","type":"exact"}],"termid":"SO:0001986"}


id: PBO:0063063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PANK2 antisense RNA 1","termid":"PBO:0063063"}


id: PBO:0050826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxypyruvate isomerase (putative)","termid":"PBO:0050826"}


id: GO:1903564
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein localization to cilium.","definition_xrefs":["GO_REF:0000058","GOC:cilia","GOC:TermGenie","PMID:22072986","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization","termid":"GO:0032880"},{"relation_name":"regulates","term_name":"protein localization to cilium","termid":"GO:0061512"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of protein localization to cilium","termid":"GO:1903564"}


id: GO:0009017
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-succinyl-L-glutamate + H2O = L-glutamate + succinate.","definition_xrefs":["RHEA:15169","EC:3.5.1.96"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016810","GO:0016787"],"is_obsolete":false,"name":"succinylglutamate desuccinylase activity","secondary_identifiers":["KEGG_REACTION:R00411","MetaCyc:SUCCGLUDESUCC-RXN"],"synonyms":[{"name":"AstE","type":"related"},{"name":"N-succinyl-L-glutamate amidohydrolase activity","type":"related"},{"name":"N2-succinylglutamate desuccinylase activity","type":"exact"},{"name":"SGDS","type":"related"}],"termid":"GO:0009017"}


id: GO:0004960
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a thromboxane (TXA) to initiate a change in cell activity.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prostanoid receptor activity","termid":"GO:0004954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"thromboxane receptor activity","synonyms":[{"name":"TXA receptor activity","type":"exact"}],"termid":"GO:0004960"}


id: GO:0031929
data:
  {"annotated_genes":["SJAG_00561","SJAG_00875","SJAG_04496","SJAG_04235","SJAG_01032","SJAG_02605","SJAG_00167","SJAG_01703","SJAG_04394","SJAG_04460","SJAG_05346","SJAG_01047","SJAG_04987","SJAG_03355","SJAG_03501","SJAG_00289","SJAG_04910","SJAG_03720","SJAG_00143","SJAG_00756","SJAG_03371","SJAG_03486","SJAG_00688","SJAG_01142","SJAG_02231","SJAG_03799","SJAG_02765","SJAG_02424","SJAG_03907","SJAG_03405","SJAG_03529","SJAG_06588","SJAG_01187","SJAG_03928","SJAG_02723","SJAG_02426","SJAG_01509","SJAG_01020","SJAG_03067","SJAG_00117","SJAG_01320","SJAG_03678","SJAG_05030","SJAG_00209","SJAG_00824","SJAG_01184","SJAG_01983","SJAG_00991","SJAG_03089","SJAG_03072","SJAG_04249","SJAG_00169","SJAG_00457","SJAG_05184","SJAG_04206","SJAG_04383"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[62035,100059,100401],"is_not":false,"summary":null,"term":"GO:0031929"},{"annotations":[87366],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0032007"},{"annotations":[110056,94972,97545,95666,84163,101207,105342,112554,113106,114266,109236,92202,90278,110644,112304,105754,112198,103479,99104,89424,103228,107034],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1904262"},{"annotations":[112345],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1903940"},{"annotations":[101208,102646],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0032008"},{"annotations":[105343,106618,108937,114407,85546,90425,84454,92203,94113,103229,84164],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1904263"},{"annotations":[87299,93851,103072],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1904515"},{"annotations":[111540,88990,113844,90161,101209,103931],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1903432"},{"annotations":[102760,88192,102735,109104,113188,94660,110991,89309],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0038202"},{"annotations":[114422,104655,102761,95475,98821,97855],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0038203"}]},"cv_name":"biological_process","definition":"The series of molecular signals mediated by TOR (Target of rapamycin) proteins, members of the phosphoinositide (PI) 3-kinase related kinase (PIKK) family that act as serine/threonine kinases in response to nutrient availability or growth factors.","definition_xrefs":["PMID:12372295"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular signal transduction","termid":"GO:0035556"}],"gene_count":56,"genes_by_uniquename":{"SJAG_00117":null,"SJAG_00143":null,"SJAG_00167":null,"SJAG_00169":null,"SJAG_00209":null,"SJAG_00289":null,"SJAG_00457":null,"SJAG_00561":null,"SJAG_00688":null,"SJAG_00756":null,"SJAG_00824":null,"SJAG_00875":null,"SJAG_00991":null,"SJAG_01020":null,"SJAG_01032":null,"SJAG_01047":null,"SJAG_01142":null,"SJAG_01184":null,"SJAG_01187":null,"SJAG_01320":null,"SJAG_01509":null,"SJAG_01703":null,"SJAG_01983":null,"SJAG_02231":null,"SJAG_02424":null,"SJAG_02426":null,"SJAG_02605":null,"SJAG_02723":null,"SJAG_02765":null,"SJAG_03067":null,"SJAG_03072":null,"SJAG_03089":null,"SJAG_03355":null,"SJAG_03371":null,"SJAG_03405":null,"SJAG_03486":null,"SJAG_03501":null,"SJAG_03529":null,"SJAG_03678":null,"SJAG_03720":null,"SJAG_03799":null,"SJAG_03907":null,"SJAG_03928":null,"SJAG_04206":null,"SJAG_04235":null,"SJAG_04249":null,"SJAG_04383":null,"SJAG_04394":null,"SJAG_04460":null,"SJAG_04496":null,"SJAG_04910":null,"SJAG_04987":null,"SJAG_05030":null,"SJAG_05184":null,"SJAG_05346":null,"SJAG_06588":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"TOR signaling","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"synonyms":[{"name":"TOR signal transduction","type":"exact"},{"name":"TOR signaling cascade","type":"related"},{"name":"TOR signaling pathway","type":"exact"},{"name":"TOR signalling pathway","type":"exact"},{"name":"target of rapamycin signaling pathway","type":"exact"},{"name":"target of rapamycin signalling pathway","type":"exact"}],"termid":"GO:0031929","terms_by_termid":{"GO:0031929":null,"GO:0032007":null,"GO:0032008":null,"GO:0038202":null,"GO:0038203":null,"GO:1903432":null,"GO:1903940":null,"GO:1904262":null,"GO:1904263":null,"GO:1904515":null}}


id: GO:0007120
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of defining the next site of bud emergence adjacent to the last site of bud emergence on a budding cell.","definition_xrefs":["GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular bud site selection","termid":"GO:0000282"},{"relation_name":"is_a","term_name":"cell budding","termid":"GO:0007114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0000281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0007163"}],"interesting_parent_ids":["GO:0007049","GO:0007163","GO:0008150","GO:0000281"],"is_obsolete":false,"name":"axial cellular bud site selection","synonyms":[{"name":"axial bud site selection","type":"exact"},{"name":"axial budding","type":"broad"}],"termid":"GO:0007120"}


id: PBO:0005430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L37 (predicted)","termid":"PBO:0005430"}


id: PBO:0052093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KBTBD11 antisense RNA 1","termid":"PBO:0052093"}


id: GO:0036077
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Ossification wherein bone tissue forms within tendonous tissue.","definition_xrefs":["GO_REF:0000034"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ossification","termid":"GO:0001503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intratendonous ossification","termid":"GO:0036077"}


id: PBO:0113437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Squalene epoxidase; catalyzes epoxidation of squalene to 2,3-oxidosqualene; plays essential role in ergosterol-biosynthesis pathway and is specific target of antifungal drug terbinafine; directed to ER via guided entry of tail-anchored proteins (GET) pathway; degradation by ERAD triggered by membrane lipid saturation; human SQLE functionally complements the lethality of the erg1 null mutation","termid":"PBO:0113437"}


id: GO:0070450
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that is formed by the association of a heterodimeric interleukin-4 receptor complex with an interleukin-4 molecule.","definition_xrefs":["GOC:mah","PMID:10358772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005886"],"is_obsolete":false,"name":"interleukin4-interleukin-4 receptor complex","synonyms":[{"name":"IL4-IL4 receptor complex","type":"exact"},{"name":"IL4-IL4R-IL2RG complex","type":"narrow"}],"termid":"GO:0070450"}


id: PBO:0089942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi transport complex subunit Cog8","termid":"PBO:0089942"}


id: SO:0002352
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non-coding RNA typically derived from intronic sequence of the sense strand of a cognate host gene, that is not rapidly degraded. It may contain exonic sequences, 5′ caps, and/or polyA tails.","definition_xrefs":["PMID:29397203","PMID:27147469","PMID:30391089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ncRNA","termid":"SO:0000655"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sisRNA","synonyms":[{"name":"Stable intronic sequence RNA","type":"exact"},{"name":"stable_intronic_sequence_RNA","type":"exact"}],"termid":"SO:0002352"}


id: GO:1900697
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of N',N'',N'''-triacetylfusarinine C biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of secondary metabolite biosynthetic process","termid":"GO:1900378"},{"relation_name":"is_a","term_name":"regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process","termid":"GO:1900695"},{"relation_name":"positively_regulates","term_name":"N',N'',N'''-triacetylfusarinine C biosynthetic process","termid":"GO:1900551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"positive regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process","synonyms":[{"name":"activation of N',N'',N'''-triacetylfusarinine C anabolism","type":"exact"},{"name":"activation of N',N'',N'''-triacetylfusarinine C biosynthesis","type":"exact"},{"name":"activation of N',N'',N'''-triacetylfusarinine C biosynthetic process","type":"narrow"},{"name":"activation of N',N'',N'''-triacetylfusarinine C formation","type":"exact"},{"name":"activation of N',N'',N'''-triacetylfusarinine C synthesis","type":"exact"},{"name":"positive regulation of N',N'',N'''-triacetylfusarinine C anabolism","type":"exact"},{"name":"positive regulation of N',N'',N'''-triacetylfusarinine C biosynthesis","type":"exact"},{"name":"positive regulation of N',N'',N'''-triacetylfusarinine C formation","type":"exact"},{"name":"positive regulation of N',N'',N'''-triacetylfusarinine C synthesis","type":"exact"},{"name":"up regulation of N',N'',N'''-triacetylfusarinine C anabolism","type":"exact"},{"name":"up regulation of N',N'',N'''-triacetylfusarinine C biosynthesis","type":"exact"},{"name":"up regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process","type":"exact"},{"name":"up regulation of N',N'',N'''-triacetylfusarinine C formation","type":"exact"},{"name":"up regulation of N',N'',N'''-triacetylfusarinine C synthesis","type":"exact"},{"name":"up-regulation of N',N'',N'''-triacetylfusarinine C anabolism","type":"exact"},{"name":"up-regulation of N',N'',N'''-triacetylfusarinine C biosynthesis","type":"exact"},{"name":"up-regulation of N',N'',N'''-triacetylfusarinine C biosynthetic process","type":"exact"},{"name":"up-regulation of N',N'',N'''-triacetylfusarinine C formation","type":"exact"},{"name":"up-regulation of N',N'',N'''-triacetylfusarinine C synthesis","type":"exact"},{"name":"upregulation of N',N'',N'''-triacetylfusarinine C anabolism","type":"exact"},{"name":"upregulation of N',N'',N'''-triacetylfusarinine C biosynthesis","type":"exact"},{"name":"upregulation of N',N'',N'''-triacetylfusarinine C biosynthetic process","type":"exact"},{"name":"upregulation of N',N'',N'''-triacetylfusarinine C formation","type":"exact"},{"name":"upregulation of N',N'',N'''-triacetylfusarinine C synthesis","type":"exact"}],"termid":"GO:1900697"}


id: PBO:0052538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kallikrein related peptidase 11","termid":"PBO:0052538"}


id: GO:0097306
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus.","definition_xrefs":["GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to alcohol","termid":"GO:0097305"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to alcohol","termid":"GO:0097306"}


id: PBO:0057475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 593","termid":"PBO:0057475"}


id: FYPO:0002937
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of any unspliced or incompletely spliced mRNA precursor measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"decreased pre-mRNA level","synonyms":[{"name":"decreased accumulation of pre-mRNA transcripts","type":"related"},{"name":"decreased pre-mRNA accumulation","type":"related"},{"name":"decreased pre-mRNA level during mitotic cell cycle","type":"related"},{"name":"decreased pre-mRNA level during vegetative growth","type":"exact"},{"name":"decreased pre-mRNA transcript level","type":"exact"},{"name":"reduced pre-mRNA level","type":"exact"}],"termid":"FYPO:0002937"}


id: PBO:0071085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 87","termid":"PBO:0071085"}


id: PBO:0045676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein cytoplasmic 2 heavy chain 1","termid":"PBO:0045676"}


id: GO:0004955
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a prostaglandin (PG) to initiate a change in cell activity.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prostanoid receptor activity","termid":"GO:0004954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"prostaglandin receptor activity","termid":"GO:0004955"}


id: GO:0019099
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The determination of sex and sexual phenotype in a female organism's germ line.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary sex determination, germ-line","termid":"GO:0007542"},{"relation_name":"is_a","term_name":"germ-line sex determination","termid":"GO:0018992"},{"relation_name":"is_a","term_name":"female sex determination","termid":"GO:0030237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"female germ-line sex determination","secondary_identifiers":["GO:0007544"],"synonyms":[{"name":"sex determination, female germ-line determination","type":"exact"}],"termid":"GO:0019099"}


id: PBO:0084526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the DRG family of GTP-binding proteins; associates with translating ribosomes; interacts with Tma46p, Ygr250cp, Gir2p and Yap1p via two-hybrid","termid":"PBO:0084526"}


id: GO:0000345
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The eubacterial DNA-directed RNA polymerase is a multisubunit complex with a core composed of the essential subunits beta-prime, beta, and two copies of alpha and a fifth nonessential subunit called omega. An additional subunit, a sigma factor, is required for promoter recognition and specificity.","definition_xrefs":["PMID:11158566"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-directed RNA polymerase complex","termid":"GO:0000428"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005829","GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"cytosolic DNA-directed RNA polymerase complex","termid":"GO:0000345"}


id: PBO:0041780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell cycle associated protein 1","termid":"PBO:0041780"}


id: GO:0046425
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of receptor signaling via JAK-STAT.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of receptor signaling pathway via STAT","termid":"GO:1904892"},{"relation_name":"regulates","term_name":"cell surface receptor signaling pathway via JAK-STAT","termid":"GO:0007259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of receptor signaling pathway via JAK-STAT","secondary_identifiers":["GO:0007262","GO:2000364"],"synonyms":[{"name":"STAT protein import into nucleus","type":"narrow"},{"name":"regulation of STAT protein import into nucleus","type":"narrow"},{"name":"regulation of STAT protein nuclear translocation","type":"narrow"}],"termid":"GO:0046425"}


id: PATO:0000471
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000471 low (obsolete PATO:0000471)","termid":"PATO:0000471"}


id: GO:0072074
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The biological process whose specific outcome is the progression of a kidney mesenchyme from an initial condition to its mature state. This process begins with the formation of kidney mesenchyme and ends with the mature structure. Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchyme development","termid":"GO:0060485"},{"relation_name":"part_of","term_name":"kidney development","termid":"GO:0001822"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"kidney mesenchyme development","termid":"GO:0072074"}


id: PBO:0043740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 7A1","termid":"PBO:0043740"}


id: PBO:0065362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoserine aminotransferase 1 pseudogene 3","termid":"PBO:0065362"}


id: PBO:0072309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S25 pseudogene 6","termid":"PBO:0072309"}


id: GO:0061672
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Enzyme complex that in S. cerevisiae has components Dug2/Dug3 and is able to catalyze the cleavage of glutathione into glutamate and Cys-Gly.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidase complex","termid":"GO:1905368"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"glutathione hydrolase complex","synonyms":[{"name":"gamma-glutamyltranspeptidase complex","type":"exact"},{"name":"glutamine amidotransferase II complex","type":"narrow"},{"name":"glutathionase complex","type":"exact"}],"termid":"GO:0061672"}


id: PATO:0002386
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A concave 3-D shape that inheres in the bearer by virtue of the bearer's shape that is wider at one end and narrow in the middle.","definition_xrefs":["PATOC:AD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"concave 3-D shape","termid":"PATO:0002008"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anvil","synonyms":[{"name":"anvil shaped","type":"exact"}],"termid":"PATO:0002386"}


id: GO:0070116
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A thylakoid located in an organellar chromatophore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thylakoid","termid":"GO:0009579"},{"relation_name":"part_of","term_name":"organellar chromatophore","termid":"GO:0070111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005575","GO:0031410","GO:0005737"],"is_obsolete":false,"name":"organellar chromatophore thylakoid","synonyms":[{"name":"Paulinella-type chromatophore thylakoid","type":"exact"}],"termid":"GO:0070116"}


id: GO:0032729
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon.","definition_xrefs":["PMID:15546383","GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of type II interferon production","termid":"GO:0032649"},{"relation_name":"positively_regulates","term_name":"type II interferon production","termid":"GO:0032609"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of type II interferon production","secondary_identifiers":["GO:1902715","GO:0045078"],"synonyms":[{"name":"activation of interferon-gamma production","type":"narrow"},{"name":"positive regulation of interferon-gamma biosynthetic process","type":"narrow"},{"name":"positive regulation of interferon-gamma production","type":"exact"},{"name":"positive regulation of interferon-gamma secretion","type":"narrow"},{"name":"stimulation of interferon-gamma production","type":"narrow"},{"name":"up regulation of interferon-gamma production","type":"exact"},{"name":"up-regulation of interferon-gamma production","type":"exact"},{"name":"upregulation of interferon-gamma production","type":"exact"}],"termid":"GO:0032729"}


id: PR:O14100
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- zds1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14100"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein zds1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31F12.01","synonyms":[{"name":"Spom972h-zds1","type":"exact"},{"name":"meiotically up-regulated gene 88 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14100"}


id: PBO:0085502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein co-chaperone with a zinc finger motif; essential for protein import into mitochondria; may act with Pam18p to facilitate recognition and folding of imported proteins by Ssc1p (mtHSP70) in the mitochondrial matrix; required for the maintenance of Ssc1p solubility and assists in the functional interaction of Ssc1p with substrate proteins","termid":"PBO:0085502"}


id: GO:0039723
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a symbiont stops, prevents, or reduces a cytoplasmic pattern recognition receptor signaling pathway in a host organism by reducing the activity of a host serine/threonine kinase TBK1.","definition_xrefs":["PMID:22171259","PMID:34084167"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of TBK1 activity","secondary_identifiers":["VZ:4477"],"synonyms":[{"name":"inhibition of host TBK1 by virus","type":"related"},{"name":"suppression by virus of host TBK1 activity","type":"related"},{"name":"suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of TBK1 activity","type":"narrow"},{"name":"symbiont-mediated suppression of host TKB signaling","type":"related"}],"termid":"GO:0039723"}


id: GO:0097504
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Nuclear bodies frequently found near or associated with Cajal bodies (also called coiled bodies or CBs). Gemini of coiled bodies, or 'gems', are similar in size and shape to CBs, and often indistinguishable under the microscope. Unlike CBs, gems do not contain small nuclear ribonucleoproteins (snRNPs); they contain a protein called survivor of motor neurons (SMN) whose function relates to snRNP biogenesis. Gems are believed to assist CBs in snRNP biogenesis, and to play a role in the etiology of spinal muscular atrophy (SMA).","definition_xrefs":["GOC:pr","PMID:9683623","PMID:11031238","Wikipedia:Cell_nucleus#Cajal_bodies_and_gems"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear body","termid":"GO:0016604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0005654"}],"interesting_parent_ids":["GO:0005654","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"Gemini of coiled bodies","synonyms":[{"name":"Gems","type":"exact"}],"termid":"GO:0097504"}


id: PBO:0087326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sorbitol dehydrogenase; protein sequence is 99% identical to the Sor1p sorbitol dehydrogenase","termid":"PBO:0087326"}


id: FYPO:0000884
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 in centromere inner repeat regions occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K9 trimethylation at centromere inner repeat during vegetative growth","termid":"FYPO:0000865"},{"relation_name":"is_a","term_name":"decreased histone H3-K9 trimethylation at centromere during vegetative growth","termid":"FYPO:0000883"},{"relation_name":"is_a","term_name":"decreased histone H3-K9 methylation at centromere inner repeat during vegetative growth","termid":"FYPO:0008200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002494","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0002274"],"is_obsolete":false,"name":"decreased histone H3-K9 trimethylation at centromere inner repeat during vegetative growth","synonyms":[{"name":"decreased histone H3 K9 trimethylation at centromere inner repeat during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 trimethylation at centromere imr during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 trimethylation at centromere inner repeat during mitotic cell cycle","type":"related"},{"name":"decreased histone H3K9 trimethylation at centromere inner repeat during vegetative growth","type":"exact"},{"name":"decreased histone H3K9me3 at centromere inner repeat during vegetative growth","type":"exact"},{"name":"decreased histone lysine H3 K9 trimethylation at centromere inner repeat during vegetative growth","type":"exact"},{"name":"reduced histone H3-K9 trimethylation at centromere inner repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0000884"}


id: PBO:0071786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribophorin II","termid":"PBO:0071786"}


id: PBO:0085691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in regulation of phospholipid metabolism; one of 6 proteins (Ist2p, Scs2p, Scs22p, Tcb1p, Tcb2p, Tcb3p) that connect the ER and plasma membrane (PM); regulates PM PI4P levels by controlling access of the Sac1p phosphatase to its substrate, PI4P; human VAP homolog; similar to D. melanogaster inturned protein; SWAT-GFP and mCherry fusion proteins localize to the cytosol; SCS22 has a paralog, SCS2, that arose from the whole genome duplication","termid":"PBO:0085691"}


id: PBO:0055541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2977","termid":"PBO:0055541"}


id: GO:0036334
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any biological process involved in the maintenance of the steady-state number of epidermal stem cells within a population of cells.","definition_xrefs":["CL:1000428","GOC:nhn","PMID:17666529"],"direct_ancestors":[{"relation_name":"is_a","term_name":"homeostasis of number of cells","termid":"GO:0048872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epidermal stem cell homeostasis","termid":"GO:0036334"}


id: PBO:0091417
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human ELOVL1","termid":"PBO:0091417"}


id: GO:0050955
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events required for an organism to receive a temperature stimulus, convert it to a molecular signal, and recognize and characterize the signal. Thermoception in larger animals is mainly done in the skin; mammals have at least two types of sensor, for detecting heat (temperatures above body temperature) and cold (temperatures below body temperature).","definition_xrefs":["Wikipedia:Thermoception","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory perception of temperature stimulus","termid":"GO:0050951"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"thermoception","synonyms":[{"name":"thermoreception","type":"exact"}],"termid":"GO:0050955"}


id: PBO:0046431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epoxide hydrolase 1","termid":"PBO:0046431"}


id: PBO:0085598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in calcium homeostasis and exit from quiescence; required for proper trehalose levels during quiescence; may play a role in cell wall biosynthesis, mutants are hypersensitive to antifungal, Papulacandin B; null mutants have increased plasmid loss; interacts with Pdr5p","termid":"PBO:0085598"}


id: GO:0009060
data:
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id: CHEBI:28939
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetyl-L-cysteine","termid":"CHEBI:28939"}


id: GO:0016573
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of a histone by the addition of an acetyl group.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete histone acetylation (obsolete GO:0016573)","termid":"GO:0016573"}


id: GO:0004322
data:
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id: PBO:0003427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF1A-like (predicted)","termid":"PBO:0003427"}


id: FYPO:0000550
data:
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id: GO:0001720
data:
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id: FYPO:0007790
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id: PBO:0060696
data:
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id: PBO:0091307
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human Rab6","termid":"PBO:0091307"}


id: PBO:0064926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 6 catalytic subunit pseudogene","termid":"PBO:0064926"}


id: FYPO:0000047
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id: PBO:0060476
data:
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id: PR:Q9US25
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hrp1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9US25"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain helicase hrp1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1783.05","synonyms":[{"name":"ATP-dependent helicase hrp1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-hrp1","type":"exact"}],"termid":"PR:Q9US25"}


id: PBO:0077960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon AGC) 14-1","termid":"PBO:0077960"}


id: GO:0009536
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.","definition_xrefs":["GOC:jl","ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"plastid","secondary_identifiers":["Wikipedia:Plastid"],"termid":"GO:0009536"}


id: FYPO:0004395
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A spindle phenotype in which the mitotic spindle is shorter than normal during metaphase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"short bipolar mitotic spindle","termid":"FYPO:0000732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002399","FYPO:0001320","FYPO:0000120","FYPO:0005447","FYPO:0000054","FYPO:0001985"],"is_obsolete":false,"name":"short bipolar mitotic spindle during metaphase","synonyms":[{"name":"decreased mitotic spindle length during metaphase","type":"exact"},{"name":"short mitotic spindle during metaphase","type":"exact"},{"name":"short mitotic spindle during metaphase during vegetative growth","type":"exact"},{"name":"short mitotic spindles during metaphase","type":"exact"},{"name":"short spindle during mitotic metaphase","type":"exact"}],"termid":"FYPO:0004395"}


id: PBO:0026974
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_level_of_substance_in_mitochondrion","termid":"PBO:0026974"}


id: PBO:0087137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein that activates mRNA decapping directly; binds to mRNA substrate and enhances activity of decapping proteins Dcp1p and Dcp2p; has a role in translation during heat stress; protein becomes more abundant and forms cytoplasmic foci in response to DNA replication stress; EDC1 has a paralog, EDC2, that arose from the whole genome duplication","termid":"PBO:0087137"}


id: GO:0005006
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with an epidermal growth factor receptor ligand and transmitting the signal across the plasma membrane to initiate a change in cell activity.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane receptor protein tyrosine kinase activity","termid":"GO:0004714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016301","GO:0004672","GO:0003824","GO:0016740","GO:0003674","GO:0038023","GO:0140096"],"is_obsolete":false,"name":"epidermal growth factor receptor activity","secondary_identifiers":["GO:0005023"],"synonyms":[{"name":"EGF receptor activity","type":"exact"},{"name":"EGFR","type":"exact"},{"name":"TGF-alpha receptor activity","type":"exact"},{"name":"epidermal growth factor-activated receptor activity","type":"exact"},{"name":"transforming growth factor-alpha receptor activity","type":"exact"}],"termid":"GO:0005006"}


id: PBO:0029502
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_vegetative_cell_population_after_spore_germination,_elongated_curved_germ_tubes_(obsolete_FYPO:0002213)","termid":"PBO:0029502"}


id: SO:0001982
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A plant regulatory promoter motif, composed of a highly conserved hexamer GATAAG (I-box core).","definition_xrefs":["PMID:2347304","SO:ml","PMID:2902624"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory_promoter_element","termid":"SO:0001678"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"I-box","synonyms":[{"name":"I-box promoter motif","type":"exact"}],"termid":"SO:0001982"}


id: GO:1901562
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a paraquat stimulus.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to paraquat","termid":"GO:1901562"}


id: GO:0005995
data:
  {"annotated_genes":["SJAG_02949"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96446],"is_not":false,"summary":null,"term":"GO:0005995"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of melibiose, the disaccharide 6-O-alpha-D-galactopyranosyl-D-glucose.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"melibiose metabolic process","termid":"GO:0005994"},{"relation_name":"is_a","term_name":"disaccharide catabolic process","termid":"GO:0046352"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02949":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"melibiose catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"melibiose breakdown","type":"exact"},{"name":"melibiose catabolism","type":"exact"},{"name":"melibiose degradation","type":"exact"}],"termid":"GO:0005995","terms_by_termid":{"GO:0005995":null}}


id: GO:0005345
data:
  {"annotated_genes":["SJAG_03777","SJAG_04717"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[108622],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015207"},{"annotations":[108623],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015208"},{"annotations":[84577],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042907"}]},"cv_name":"molecular_function","definition":"Enables the transfer of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, from one side of a membrane to the other.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleobase transmembrane transporter activity","termid":"GO:0015205"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03777":null,"SJAG_04717":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"purine nucleobase transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"purine base transmembrane transporter activity","type":"exact"},{"name":"purine transmembrane transporter activity","type":"related"}],"termid":"GO:0005345","terms_by_termid":{"GO:0015207":null,"GO:0015208":null,"GO:0042907":null}}


id: FYPO:0003518
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of hercynine (N(alpha),N(alpha),N(alpha)-trimethyl-L-histidine) measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cellular amino acid level","termid":"FYPO:0003986"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular hercynine level during vegetative growth","synonyms":[{"name":"increased cellular N(alpha),N(alpha),N(alpha)-trimethyl-L-histidine level","type":"exact"},{"name":"increased cellular hercynine level during mitotic cell cycle","type":"related"},{"name":"increased cellular trimethyl-histidine level during vegetative growth","type":"exact"},{"name":"increased cellular trimethylhistidine level during vegetative growth","type":"exact"},{"name":"increased hercynine level during vegetative growth","type":"exact"}],"termid":"FYPO:0003518"}


id: PBO:0054629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2034","termid":"PBO:0054629"}


id: PBO:0035797
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_acetylation_during_vegetative_growth","termid":"PBO:0035797"}


id: PBO:0028113
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_G418","termid":"PBO:0028113"}


id: PBO:0087762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of TORC1 (Tor1p or Tor2p-Kog1p-Lst8p-Tco89p); regulates global H3K56ac; TORC1 complex regulates growth in response to nutrient availability; cooperates with Ssd1p in the maintenance of cellular integrity; deletion strains are hypersensitive to rapamycin","termid":"PBO:0087762"}


id: PBO:0039617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annexin A2 receptor","termid":"PBO:0039617"}


id: GO:0005569
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete small nucleolar RNA (obsolete GO:0005569)","synonyms":[{"name":"small nucleolar RNA","type":"exact"}],"termid":"GO:0005569"}


id: PBO:0000131
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.1.1.1","termid":"PBO:0000131"}


id: GO:0003245
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental growth of cardiac muscle tissue that contributes to the shaping of the heart.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth involved in heart morphogenesis","termid":"GO:0003241"},{"relation_name":"is_a","term_name":"cardiac muscle tissue growth","termid":"GO:0055017"},{"relation_name":"part_of","term_name":"cardiac muscle tissue morphogenesis","termid":"GO:0055008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac muscle tissue growth involved in heart morphogenesis","termid":"GO:0003245"}


id: GO:1902796
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of snoRNA processing.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:24210919"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gene expression","termid":"GO:0010468"},{"relation_name":"is_a","term_name":"regulation of snoRNA metabolic process","termid":"GO:1903323"},{"relation_name":"regulates","term_name":"sno(s)RNA processing","termid":"GO:0043144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016074"}],"interesting_parent_ids":["GO:0008150","GO:0016074","GO:0010467"],"is_obsolete":false,"name":"regulation of snoRNA processing","termid":"GO:1902796"}


id: GO:0048519
data:
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id: PBO:0089119
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id: MOD:01909
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id: GO:0014031
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id: PBO:0090195
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id: PR:Q09815
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pom2 gene.","definition_xrefs":["UniProtKB:Q09815","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase ppk5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC16C9.07","synonyms":[{"name":"Spom972h-pom2","type":"exact"},{"name":"meiotically up-regulated gene 189 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09815"}


id: GO:0072680
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id: FYPO:0003236
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id: SO:0000378
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id: GO:0170020
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id: PBO:0041963
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id: PBO:0005103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Set1C PHD Finger protein Spf1","termid":"PBO:0005103"}


id: FYPO:0007437
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the mitotic spindle assembly checkpoint is activated continuously. The mitotic spindle assembly checkpoint normally delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle.","definition_xrefs":["PomBase:mah","PMID:28017606"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle assembly checkpoint","termid":"FYPO:0000168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0000631","FYPO:0001985","FYPO:0000298"],"is_obsolete":false,"name":"constitutive activation of mitotic spindle assembly checkpoint","synonyms":[{"name":"constitutive activation of mitotic cell cycle spindle assembly checkpoint","type":"exact"},{"name":"constitutively activated of mitotic spindle assembly checkpoint","type":"exact"}],"termid":"FYPO:0007437"}


id: PBO:0087607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the cohesin complex; which is required for sister chromatid cohesion during mitosis and meiosis and interacts with centromeres and chromosome arms; relocalizes to the cytosol in response to hypoxia; essential for viability","termid":"PBO:0087607"}


id: PBO:0031496
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_methyl_methanesulfonate","termid":"PBO:0031496"}


id: PBO:0078673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon TTT) 6-1","termid":"PBO:0078673"}


id: GO:0046268
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of toluene-4-sulfonate, 4-methylbenzenesulfonate, the anion of sulfonic acid attached to a methylbenzene molecule.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete toluene-4-sulfonate biosynthetic process (obsolete GO:0046268)","synonyms":[{"name":"4-toluenesulfonate biosynthesis","type":"exact"},{"name":"4-toluenesulfonate biosynthetic process","type":"exact"},{"name":"toluene-4-sulfonate anabolism","type":"exact"},{"name":"toluene-4-sulfonate biosynthesis","type":"exact"},{"name":"toluene-4-sulfonate biosynthetic process","type":"exact"},{"name":"toluene-4-sulfonate formation","type":"exact"},{"name":"toluene-4-sulfonate synthesis","type":"exact"},{"name":"toluene-4-sulphonate biosynthesis","type":"exact"},{"name":"toluene-4-sulphonate biosynthetic process","type":"exact"}],"termid":"GO:0046268"}


id: PBO:0063473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein disulfide isomerase family A member 3","termid":"PBO:0063473"}


id: PBO:0000105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-asparaginase (predicted)","termid":"PBO:0000105"}


id: PR:Q09735
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cytosol aminopeptidase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00229","PRO:DNx","PANTHER:PTHR11963:SF3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aminopeptidase C13A11.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13A11.05","secondary_identifiers":["UniProtKB:Q09735"],"synonyms":[{"name":"Spom972h-LAP3","type":"exact"}],"termid":"PR:Q09735"}


id: PBO:0088651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"19S proteasome regulatory subunit Rpn8","termid":"PBO:0088651"}


id: PBO:0046413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epithelial mitogen","termid":"PBO:0046413"}


id: PBO:0041248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 1 open reading frame 146","termid":"PBO:0041248"}


id: PBO:0084242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Initiator methionine 2'-O-ribosyl phosphate transferase; modifies the initiator methionine tRNA at position 64 to distinguish it from elongator methionine tRNA","termid":"PBO:0084242"}


id: PBO:0034481
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_level_during_cellular_response_to_hydroxyurea","termid":"PBO:0034481"}


id: GO:0006363
data:
  {"annotated_genes":["SJAG_02922","SJAG_04855","SJAG_04106","SJAG_03689"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92485,98377,110285,112054],"is_not":false,"summary":null,"term":"GO:0006363"}]},"cv_name":"biological_process","definition":"A transcription termination process that completes the production of a ribosomal RNA transcript. RNAP I termination requires binding of a terminator protein to specific sequences downstream of the transcription unit.","definition_xrefs":["GOC:mah","GOC:txnOH","PMID:10684922","PMID:27371117"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated transcription termination","termid":"GO:0006353"},{"relation_name":"part_of","term_name":"transcription by RNA polymerase I","termid":"GO:0006360"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02922":null,"SJAG_03689":null,"SJAG_04106":null,"SJAG_04855":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0006351","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"termination of RNA polymerase I transcription","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0001185","GO:0019223"],"synonyms":[{"name":"RNA polymerase I transcription termination","type":"exact"},{"name":"RNA polymerase I transcription termination factor activity","type":"related"},{"name":"termination of RNA polymerase I transcription from promoter for nuclear large rRNA transcript","type":"narrow"},{"name":"transcription termination from Pol I promoter","type":"exact"},{"name":"transcription termination from RNA polymerase I promoter","type":"exact"}],"termid":"GO:0006363","terms_by_termid":{"GO:0006363":null}}


id: PBO:0062378
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily C member 2","termid":"PBO:0062378"}


id: PBO:0043762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase copper chaperone COX11","termid":"PBO:0043762"}


id: PBO:0005392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complexed with Cdc5 protein Cwf20","termid":"PBO:0005392"}


id: PBO:0025440
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetylcytidine at positions 1297 & 1815","termid":"PBO:0025440"}


id: GO:0015517
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: galactose(out) + H+(out) = galactose(in) + H+(in).","definition_xrefs":["TC:2.A.1.1.1","TC:2.A.1.1.9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactose transmembrane transporter activity","termid":"GO:0005354"},{"relation_name":"is_a","term_name":"hexose:proton symporter activity","termid":"GO:0009679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"galactose:proton symporter activity","synonyms":[{"name":"galactose:hydrogen symporter activity","type":"exact"},{"name":"lactose, galactose:hydrogen symporter activity","type":"broad"}],"termid":"GO:0015517"}


id: PBO:0034582
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_without_cell_division,_lysed_cell","termid":"PBO:0034582"}


id: PBO:0031821
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_frequency_of_apoptosis","termid":"PBO:0031821"}


id: FYPO:0003850
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing an oligomycin antibiotic.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0000257","FYPO:0002060","FYPO:0000139","FYPO:0002058"],"is_obsolete":false,"name":"normal growth on oligomycin","synonyms":[{"name":"normal cell population growth in presence of oligomycin","type":"exact"},{"name":"normal cell population growth on oligomycin","type":"exact"},{"name":"normal cellular response to oligomycin","type":"related"},{"name":"normal vegetative cell population growth on oligomycin","type":"exact"}],"termid":"FYPO:0003850"}


id: PBO:0058282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4659a","termid":"PBO:0058282"}


id: GO:0019884
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses antigen (peptide or lipid) of exogenous origin on its cell surface in association with an MHC protein complex.","definition_xrefs":["ISBN:0781735149","PMID:15771591","GOC:add","PMID:15928678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation","termid":"GO:0019882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of exogenous antigen","synonyms":[{"name":"antigen presentation, exogenous antigen","type":"exact"}],"termid":"GO:0019884"}


id: PBO:0090043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER oxidoreductase Pbr1, implicated in lipid metabolism","termid":"PBO:0090043"}


id: FYPO:0002639
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the distance between sister kinetochores is greater than normal before the onset of mitotic anaphase.","definition_xrefs":["PMID:22065639","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"output_of","term_name":"abnormal centromere localization","termid":"FYPO:0001778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"increased interkinetochore distance before mitotic anaphase","synonyms":[{"name":"increased distance between mitotic kinetochores","type":"related"},{"name":"increased interkinetochore distance before anaphase during mitotic cell cycle","type":"related"},{"name":"increased interkinetochore distance before anaphase onset","type":"exact"},{"name":"increased interkinetochore distance before mitotic anaphase during vegetative growth","type":"exact"},{"name":"increased kinetochore stretching before mitotic anaphase","type":"related"},{"name":"increased sister kinetochore distance before mitotic anaphase","type":"exact"}],"termid":"FYPO:0002639"}


id: GO:0060314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the activity of a ryanodine-sensitive calcium-release channel. The ryanodine-sensitive calcium-release channel catalyzes the transmembrane transfer of a calcium ion by a channel that opens when a ryanodine class ligand has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["GOC:dph","GOC:tb","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of release of sequestered calcium ion into cytosol","termid":"GO:0051279"},{"relation_name":"is_a","term_name":"regulation of calcium ion transmembrane transporter activity","termid":"GO:1901019"},{"relation_name":"is_a","term_name":"regulation of cation channel activity","termid":"GO:2001257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"regulation of ryanodine-sensitive calcium-release channel activity","termid":"GO:0060314"}


id: GO:0030515
data:
  {"annotated_genes":["SJAG_00744","SJAG_04942","SJAG_00897","SJAG_02608","SJAG_00566","SJAG_04224","SJAG_00945","SJAG_02372","SJAG_02702","SJAG_03125","SJAG_00572","SJAG_01234","SJAG_04069","SJAG_03341","SJAG_02025","SJAG_01907","SJAG_03654","SJAG_00559","SJAG_02530","SJAG_00879","SJAG_02300","SJAG_05186","SJAG_03569","SJAG_03252","SJAG_02377","SJAG_00344","SJAG_03028","SJAG_00083","SJAG_04424","SJAG_01764","SJAG_05187","SJAG_04339","SJAG_03846","SJAG_04754","SJAG_03156","SJAG_04908","SJAG_02662"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[85362,87421,87621,87791,88150,88730,88932,90235,94624,96857,97666,99218,102053,102292,103046,103184,104118,104684,105801,106053,106176,106648,107135,107423,107854,108073,109614,109985],"is_not":false,"summary":null,"term":"GO:0030515"},{"annotations":[97261,102363,91461,86136],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034513"},{"annotations":[104786,111812,90437,91833,111264],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034511"}]},"cv_name":"molecular_function","definition":"Binding to a small nucleolar RNA.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA binding","termid":"GO:0003723"}],"gene_count":37,"genes_by_uniquename":{"SJAG_00083":null,"SJAG_00344":null,"SJAG_00559":null,"SJAG_00566":null,"SJAG_00572":null,"SJAG_00744":null,"SJAG_00879":null,"SJAG_00897":null,"SJAG_00945":null,"SJAG_01234":null,"SJAG_01764":null,"SJAG_01907":null,"SJAG_02025":null,"SJAG_02300":null,"SJAG_02372":null,"SJAG_02377":null,"SJAG_02530":null,"SJAG_02608":null,"SJAG_02662":null,"SJAG_02702":null,"SJAG_03028":null,"SJAG_03125":null,"SJAG_03156":null,"SJAG_03252":null,"SJAG_03341":null,"SJAG_03569":null,"SJAG_03654":null,"SJAG_03846":null,"SJAG_04069":null,"SJAG_04224":null,"SJAG_04339":null,"SJAG_04424":null,"SJAG_04754":null,"SJAG_04908":null,"SJAG_04942":null,"SJAG_05186":null,"SJAG_05187":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003723"],"is_obsolete":false,"name":"snoRNA binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0030515","terms_by_termid":{"GO:0030515":null,"GO:0034511":null,"GO:0034513":null}}


id: GO:0001051
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a single subunit plastid RNA polymerase enzyme, which is composed of a single catalytic subunit similar to the RNA polymerase enzymes from phages T3, T7, and SP6.","definition_xrefs":["GOC:txnOH","PMID:20701995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"single-subunit type RNA polymerase binding","termid":"GO:0001050"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"plastid single-subunit type RNA polymerase binding","termid":"GO:0001051"}


id: PBO:0086428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative high affinity iron transporter; involved in transport of intravacuolar stores of iron; forms complex with Fet5p; expression is regulated by iron; proposed to play indirect role in endocytosis; protein abundance increases in response to DNA replication stress","termid":"PBO:0086428"}


id: PBO:0062869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OTU deubiquitinase 6A","termid":"PBO:0062869"}


id: PBO:0031006
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_elongated_mononucleate_aseptate_cell","termid":"PBO:0031006"}


id: PBO:0057803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3125","termid":"PBO:0057803"}


id: PBO:0036231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein, flocculin Pfl8","termid":"PBO:0036231"}


id: PR:Q9UUG3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- dph4 gene.","definition_xrefs":["UniProtKB:Q9UUG3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diphthamide biosynthesis protein 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC926.05c","synonyms":[{"name":"Spom972h-dph4","type":"exact"}],"termid":"PR:Q9UUG3"}


id: GO:0050462
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: phosphoenolpyruvate + N-acetyl-D-mannosamine + H2O = phosphate + N-acetylneuraminate.","definition_xrefs":["MetaCyc:N-ACETYLNEURAMINATE-SYNTHASE-RXN","EC:2.5.1.56"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016765","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"N-acetylneuraminate synthase activity","secondary_identifiers":["RHEA:19273"],"synonyms":[{"name":"(NANA)condensing enzyme activity","type":"related"},{"name":"N-acetylneuraminate pyruvate-lyase (pyruvate-phosphorylating) activity","type":"related"},{"name":"N-acetylneuraminic acid synthase activity","type":"related"},{"name":"NeuAc synthase activity","type":"related"},{"name":"phosphoenolpyruvate:N-acetyl-D-mannosamine C-(1-carboxyvinyl)transferase (phosphate-hydrolysing, 2-carboxy-2-oxoethyl-forming)","type":"related"}],"termid":"GO:0050462"}


id: PBO:0086819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; YMR084W and adjacent ORF YMR085W are merged in related strains, and together are paralogous to glutamine-fructose-6-phosphate amidotransferase GFA1","termid":"PBO:0086819"}


id: PBO:0074673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 58B","termid":"PBO:0074673"}


id: GO:1905118
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ribonucleoside-diphosphate reductase activity.","definition_xrefs":["GOC:bhm","GOC:TermGenie","GO_REF:0000059","PMID:24733891"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of oxidoreductase activity","termid":"GO:0051353"},{"relation_name":"is_a","term_name":"regulation of ribonucleoside-diphosphate reductase activity","termid":"GO:1905117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of ribonucleoside-diphosphate reductase activity","synonyms":[{"name":"activation of RNR","type":"related"},{"name":"activation of adenosylcobalamin-dependent ribonucleotide reductase activity","type":"related"},{"name":"activation of aerobic non-heme iron-dependent ribonucleotide reductase activity","type":"related"},{"name":"activation of anaerobic iron-sulfur-dependent ribonucleotide reductase activity","type":"related"},{"name":"activation of class I ribonucleotide reductase activity","type":"related"},{"name":"activation of class II ribonucleoside-diphosphate reductase activity","type":"related"},{"name":"activation of class II ribonucleotide reductase activity","type":"related"},{"name":"activation of class III ribonucleotide reductase activity","type":"related"},{"name":"activation of nucleoside diphosphate reductase activity","type":"related"},{"name":"activation of purine/pyrimidine nucleoside diphosphate reduction","type":"related"},{"name":"activation of ribonucleoside 5'-diphosphate reductase activity","type":"related"},{"name":"activation of ribonucleoside-diphosphate reductase activity","type":"related"},{"name":"activation of ribonucleotide diphosphate reductase activity","type":"related"},{"name":"positive regulation of RNR","type":"related"},{"name":"positive regulation of adenosylcobalamin-dependent ribonucleotide reductase activity","type":"related"},{"name":"positive regulation of aerobic non-heme iron-dependent ribonucleotide reductase activity","type":"related"},{"name":"positive regulation of anaerobic iron-sulfur-dependent ribonucleotide reductase activity","type":"related"},{"name":"positive regulation of class I ribonucleotide reductase activity","type":"related"},{"name":"positive regulation of class II ribonucleoside-diphosphate reductase activity","type":"related"},{"name":"positive regulation of class II ribonucleotide reductase activity","type":"related"},{"name":"positive regulation of class III ribonucleotide reductase activity","type":"related"},{"name":"positive regulation of nucleoside diphosphate reductase activity","type":"related"},{"name":"positive regulation of purine/pyrimidine nucleoside diphosphate reduction","type":"related"},{"name":"positive regulation of ribonucleoside 5'-diphosphate reductase activity","type":"related"},{"name":"positive regulation of ribonucleotide diphosphate reductase activity","type":"related"},{"name":"up regulation of RNR","type":"related"},{"name":"up regulation of adenosylcobalamin-dependent ribonucleotide reductase activity","type":"related"},{"name":"up regulation of aerobic non-heme iron-dependent ribonucleotide reductase activity","type":"related"},{"name":"up regulation of anaerobic iron-sulfur-dependent ribonucleotide reductase activity","type":"related"},{"name":"up regulation of class I ribonucleotide reductase activity","type":"related"},{"name":"up regulation of class II ribonucleoside-diphosphate reductase activity","type":"related"},{"name":"up regulation of class II ribonucleotide reductase activity","type":"related"},{"name":"up regulation of class III ribonucleotide reductase activity","type":"related"},{"name":"up regulation of nucleoside diphosphate reductase activity","type":"related"},{"name":"up regulation of purine/pyrimidine nucleoside diphosphate reduction","type":"related"},{"name":"up regulation of ribonucleoside 5'-diphosphate reductase activity","type":"related"},{"name":"up regulation of ribonucleoside-diphosphate reductase activity","type":"related"},{"name":"up regulation of ribonucleotide diphosphate reductase activity","type":"related"},{"name":"up-regulation of RNR","type":"related"},{"name":"up-regulation of adenosylcobalamin-dependent ribonucleotide reductase activity","type":"related"},{"name":"up-regulation of aerobic non-heme iron-dependent ribonucleotide reductase activity","type":"related"},{"name":"up-regulation of anaerobic iron-sulfur-dependent ribonucleotide reductase activity","type":"related"},{"name":"up-regulation of class I ribonucleotide reductase activity","type":"related"},{"name":"up-regulation of class II ribonucleoside-diphosphate reductase activity","type":"related"},{"name":"up-regulation of class II ribonucleotide reductase activity","type":"related"},{"name":"up-regulation of class III ribonucleotide reductase activity","type":"related"},{"name":"up-regulation of nucleoside diphosphate reductase activity","type":"related"},{"name":"up-regulation of purine/pyrimidine nucleoside diphosphate reduction","type":"related"},{"name":"up-regulation of ribonucleoside 5'-diphosphate reductase activity","type":"related"},{"name":"up-regulation of ribonucleoside-diphosphate reductase activity","type":"related"},{"name":"up-regulation of ribonucleotide diphosphate reductase activity","type":"related"},{"name":"upregulation of RNR","type":"related"},{"name":"upregulation of adenosylcobalamin-dependent ribonucleotide reductase activity","type":"related"},{"name":"upregulation of aerobic non-heme iron-dependent ribonucleotide reductase activity","type":"related"},{"name":"upregulation of anaerobic iron-sulfur-dependent ribonucleotide reductase activity","type":"related"},{"name":"upregulation of class I ribonucleotide reductase activity","type":"related"},{"name":"upregulation of class II ribonucleoside-diphosphate reductase activity","type":"related"},{"name":"upregulation of class II ribonucleotide reductase activity","type":"related"},{"name":"upregulation of class III ribonucleotide reductase activity","type":"related"},{"name":"upregulation of nucleoside diphosphate reductase activity","type":"related"},{"name":"upregulation of purine/pyrimidine nucleoside diphosphate reduction","type":"related"},{"name":"upregulation of ribonucleoside 5'-diphosphate reductase activity","type":"related"},{"name":"upregulation of ribonucleoside-diphosphate reductase activity","type":"related"},{"name":"upregulation of ribonucleotide diphosphate reductase activity","type":"related"}],"termid":"GO:1905118"}


id: GO:1900561
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving dehydroaustinol.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolic process","termid":"GO:0019748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"dehydroaustinol metabolic process","synonyms":[{"name":"dehydroaustinol metabolism","type":"exact"}],"termid":"GO:1900561"}


id: GO:0004591
data:
  {"annotated_genes":["SJAG_02464"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[106207],"is_not":false,"summary":null,"term":"GO:0004591"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + lipoamide + H+ = S-succinyldihydrolipoamide + CO2.","definition_xrefs":["EC:1.2.4.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor","termid":"GO:0016624"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02464":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"oxoglutarate dehydrogenase (succinyl-transferring) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:2OXOGLUTDECARB-RXN","RHEA:12188"],"synonyms":[{"name":"2-ketoglutarate dehydrogenase activity","type":"related"},{"name":"2-oxoglutarate dehydrogenase activity","type":"related"},{"name":"2-oxoglutarate: lipoate oxidoreductase activity","type":"related"},{"name":"2-oxoglutarate:dihydrolipoyllysine-residue succinyltransferase-lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-succinylating)","type":"related"},{"name":"2-oxoglutarate:lipoamide 2-oxidoreductase (decarboxylating and acceptor-succinylating) activity","type":"related"},{"name":"AKGDH activity","type":"related"},{"name":"OGDC activity","type":"related"},{"name":"alpha-ketoglutarate dehydrogenase activity","type":"related"},{"name":"alpha-ketoglutaric acid dehydrogenase activity","type":"related"},{"name":"alpha-ketoglutaric dehydrogenase activity","type":"related"},{"name":"alpha-oxoglutarate dehydrogenase activity","type":"related"},{"name":"ketoglutaric dehydrogenase activity","type":"related"},{"name":"oxoglutarate decarboxylase activity","type":"related"},{"name":"oxoglutarate dehydrogenase (lipoamide) activity","type":"exact"},{"name":"oxoglutarate dehydrogenase activity","type":"related"}],"termid":"GO:0004591","terms_by_termid":{"GO:0004591":null}}


id: PBO:0029783
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_vegetative_cell_population_with_abnormal_cell_morphology_(obsolete_FYPO:0002454)","termid":"PBO:0029783"}


id: PBO:0088061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-protein ligase (E3); interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; involved in K29-linked ubiquitin-dependent protein catabolism, including ubiquitin fusion proteins; relative distribution to the nucleus increases upon DNA replication stress","termid":"PBO:0088061"}


id: GO:0106283
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD+ + ursodeoxycholate = 7-oxolithocholate + H+ + NADH.","definition_xrefs":["PMID:12917011","RHEA:42028"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0033764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"ursodeoxycholate 7-beta-dehydrogenase (NAD+) activity","termid":"GO:0106283"}


id: GO:0044841
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The membrane of a gut granule, a lysosome-related organelle contained within the intestinal cells of the nematode C. elegans.","definition_xrefs":["GOC:kmv","PMID:22916203","PMID:24204312"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle membrane","termid":"GO:0030659"},{"relation_name":"part_of","term_name":"gut granule","termid":"GO:0044840"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005575","GO:0031410","GO:0005737"],"is_obsolete":false,"name":"gut granule membrane","termid":"GO:0044841"}


id: FYPO:0007044
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of alkaline phosphatase activity is decreased during a cellular stress response to zinc ions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased alkaline phosphatase activity","termid":"FYPO:0007042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0000661","FYPO:0001985","FYPO:0000654"],"is_obsolete":false,"name":"decreased alkaline phosphatase activity during stress response to zinc ion","synonyms":[{"name":"decreased alkaline phosphatase activity during cellular response to excess zinc","type":"exact"},{"name":"decreased alkaline phosphatase activity during cellular response to high zinc level","type":"exact"},{"name":"decreased alkaline phosphatase activity during cellular response to replete zinc","type":"related"},{"name":"decreased alkaline phosphatase activity during cellular stress response to zinc ion","type":"exact"},{"name":"decreased alkaline phosphatase activity during response to zinc ion stress","type":"exact"},{"name":"decreased alkaline phosphatase activity during response to zinc toxicity","type":"related"},{"name":"decreased alkaline phosphatase activity during stress response to zinc","type":"broad"},{"name":"reduced alkaline phosphatase activity during stress response to zinc ion","type":"exact"}],"termid":"FYPO:0007044"}


id: PBO:0026971
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_chromatin_at_replication_origin","termid":"PBO:0026971"}


id: GO:0140936
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A histone deubiquitinase that cleaves ubiquitin from a histone H2B protein to which it is conjugated.","definition_xrefs":["PMID:18206972","PMID:29352077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone deubiquitinase activity","termid":"GO:0140934"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0008233","GO:0140096","GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"histone H2B deubiquitinase activity","synonyms":[{"name":"histone H2B deubiquitination","type":"related"}],"termid":"GO:0140936"}


id: GO:0045879
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of smoothened signaling.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of smoothened signaling pathway","termid":"GO:0008589"},{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"negatively_regulates","term_name":"smoothened signaling pathway","termid":"GO:0007224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of smoothened signaling pathway","secondary_identifiers":["GO:0045877"],"synonyms":[{"name":"down regulation of smoothened signaling pathway","type":"exact"},{"name":"down-regulation of smoothened signaling pathway","type":"exact"},{"name":"downregulation of smoothened signaling pathway","type":"exact"},{"name":"inhibition of smoothened signaling pathway","type":"narrow"},{"name":"negative regulation of hedgehog signaling pathway","type":"exact"},{"name":"negative regulation of hh signaling pathway","type":"exact"},{"name":"negative regulation of smoothened activity","type":"related"},{"name":"negative regulation of smoothened by patched","type":"narrow"},{"name":"negative regulation of smoothened receptor activity by patched","type":"related"},{"name":"negative regulation of smoothened signalling pathway","type":"exact"}],"termid":"GO:0045879"}


id: FYPO:0006241
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of the initiation of mitotic DNA replication is abnormal during a cellular response to DNA damage. May result in re-replication of all or part of the genome.","definition_xrefs":["PMID:28806726","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal negative regulation of mitotic DNA replication initiation","termid":"FYPO:0000216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal negative regulation of mitotic DNA replication initiation during cellular response to DNA damage","synonyms":[{"name":"abnormal negative regulation of DNA replication initiation during cellular response to DNA damage during mitotic cell cycle","type":"related"},{"name":"abnormal negative regulation of mitotic DNA replication initiation during cellular response to DNA damage during vegetative growth","type":"exact"}],"termid":"FYPO:0006241"}


id: SO:1000073
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence_variant_effect that changes the splice acceptor sequence.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000073 sequence_variant_affecting_splice_acceptor (obsolete SO:1000073)","synonyms":[{"name":"mutation affecting splicing","type":"related"},{"name":"sequence variant affecting splice acceptor","type":"related"},{"name":"splice acceptor mutation","type":"exact"}],"termid":"SO:1000073"}


id: PBO:0080698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Wnt family member 4","termid":"PBO:0080698"}


id: GO:0051139
data:
  {"annotated_genes":["SJAG_01541","SJAG_04028","SJAG_04698","SJAG_04096","SJAG_04616"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87307,94430,111623,86819],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015369"},{"annotations":[87308],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010486"},{"annotations":[85444],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015386"},{"annotations":[85445,92844],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015385"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: metal ion(in) + H+(out) = metal ion(out) + H+(in).","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton transmembrane transporter activity","termid":"GO:0015078"},{"relation_name":"is_a","term_name":"metal cation:monoatomic cation antiporter activity","termid":"GO:0140828"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01541":null,"SJAG_04028":null,"SJAG_04096":null,"SJAG_04616":null,"SJAG_04698":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"metal cation:proton antiporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-435171"],"synonyms":[{"name":"metal ion:hydrogen antiporter activity","type":"exact"},{"name":"metal ion:proton antiporter activity","type":"exact"}],"termid":"GO:0051139","terms_by_termid":{"GO:0010486":null,"GO:0015369":null,"GO:0015385":null,"GO:0015386":null}}


id: PBO:0029812
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actin_cable_organization_during_mitosis","termid":"PBO:0029812"}


id: GO:1990027
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Synaptic bouton found in the ventral horn of the spinal cord. S boutons range in diameter from 0.5 to 8 um and contain spherical synaptic vesicles.","definition_xrefs":["NIF_Subcellular:nlx_subcell_100207"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terminal bouton","termid":"GO:0043195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"S bouton","termid":"GO:1990027"}


id: PBO:0079973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP9Y pseudogene 11","termid":"PBO:0079973"}


id: PBO:0079691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin like 4B","termid":"PBO:0079691"}


id: FYPO:0001898
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which cells contain fewer cytoplasmic mRNA processing bodies (P-bodies) than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component","termid":"FYPO:0000287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"P-bodies present in decreased numbers","synonyms":[{"name":"P bodies present in decreased numbers","type":"exact"},{"name":"P-bodies present in reduced numbers","type":"exact"},{"name":"cytoplasmic mRNA processing bodies present in decreased numbers","type":"exact"},{"name":"decreased P-body formation","type":"related"},{"name":"decreased P-body number","type":"exact"},{"name":"decreased number of P-bodies present","type":"exact"},{"name":"fewer P-bodies present","type":"exact"}],"termid":"FYPO:0001898"}


id: PBO:0063988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 22","termid":"PBO:0063988"}


id: PBO:0041525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 16 open reading frame 86","termid":"PBO:0041525"}


id: GO:1903993
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of protein stabilization.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:18573880"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of protein stabilization (obsolete GO:1903993)","synonyms":[{"name":"down regulation of lysosomal protein stabilization","type":"narrow"},{"name":"down regulation of positive regulation of protein stability","type":"exact"},{"name":"down regulation of protein sequestering","type":"related"},{"name":"down regulation of protein stabilization","type":"exact"},{"name":"down regulation of protein stabilization activity","type":"related"},{"name":"down-regulation of lysosomal protein stabilization","type":"narrow"},{"name":"down-regulation of positive regulation of protein stability","type":"exact"},{"name":"down-regulation of protein sequestering","type":"related"},{"name":"down-regulation of protein stabilization","type":"exact"},{"name":"down-regulation of protein stabilization activity","type":"related"},{"name":"downregulation of lysosomal protein stabilization","type":"narrow"},{"name":"downregulation of positive regulation of protein stability","type":"exact"},{"name":"downregulation of protein sequestering","type":"related"},{"name":"downregulation of protein stabilization","type":"exact"},{"name":"downregulation of protein stabilization activity","type":"related"},{"name":"inhibition of lysosomal protein stabilization","type":"narrow"},{"name":"inhibition of positive regulation of protein stability","type":"narrow"},{"name":"inhibition of protein sequestering","type":"related"},{"name":"inhibition of protein stabilization","type":"narrow"},{"name":"inhibition of protein stabilization activity","type":"related"},{"name":"negative regulation of lysosomal protein stabilization","type":"narrow"},{"name":"negative regulation of positive regulation of protein stability","type":"exact"},{"name":"negative regulation of protein sequestering","type":"related"},{"name":"negative regulation of protein stabilization","type":"exact"},{"name":"negative regulation of protein stabilization activity","type":"related"}],"termid":"GO:1903993"}


id: GO:0033098
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The inner, i.e. lumen-facing, lipid bilayer of the amyloplast envelope; also faces the amyloplast stroma.","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid inner membrane","termid":"GO:0009528"},{"relation_name":"is_a","term_name":"amyloplast membrane","termid":"GO:0033097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"amyloplast inner membrane","termid":"GO:0033098"}


id: PR:O94685
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A RalBP1-associated Eps domain-containing protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02896","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBA domain-containing protein 8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC83.01","secondary_identifiers":["UniProtKB:O94685"],"synonyms":[{"name":"Spom972h-REPS1","type":"exact"}],"termid":"PR:O94685"}


id: PBO:0086890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative transmembrane polyol transporter; supports growth on and uptake of sorbitol with moderate affinity and mannitol with lower affinity when overexpressed in a strain deleted for hexose family members; minor hexose transport activity when overexpressed in a similar strain; similarity to hexose transporters; expression is repressed by high levels of glucose","termid":"PBO:0086890"}


id: PBO:0004993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein that suppresses calcineurin deletion Rnc1","termid":"PBO:0004993"}


id: FYPO:0004635
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to microtubule cytoskeleton during vegetative growth","termid":"FYPO:0000932"},{"relation_name":"is_a","term_name":"abnormal protein localization to mitotic spindle","termid":"FYPO:0002824"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"increased protein localization to mitotic spindle","synonyms":[{"name":"increased protein localisation to mitotic spindle","type":"exact"},{"name":"increased protein localization to mitotic spindle during mitotic cell cycle","type":"related"},{"name":"increased protein localization to spindle during mitosis","type":"exact"},{"name":"increased protein localization to spindle during vegetative growth","type":"exact"}],"termid":"FYPO:0004635"}


id: PBO:0066092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAS p21 protein activator 4","termid":"PBO:0066092"}


id: PBO:0066782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 80","termid":"PBO:0066782"}


id: PATO:0001058
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001058 absolute acceleration (obsolete PATO:0001058)","termid":"PATO:0001058"}


id: PBO:0082481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Carboxy-terminal domain (CTD) phosphatase; essential for dephosphorylation of the repeated C-terminal domain of the RNA polymerase II large subunit (Rpo21p); relocalizes to the cytosol in response to hypoxia","termid":"PBO:0082481"}


id: GO:0032968
data:
  {"annotated_genes":["SJAG_01149","SJAG_02551","SJAG_01151","SJAG_00150","SJAG_03967","SJAG_03118","SJAG_03061"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91910,99151,101444,102117,105113,111361,113060],"is_not":false,"summary":null,"term":"GO:0032968"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.","definition_xrefs":["GOC:txnOH","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of DNA-templated transcription, elongation","termid":"GO:0032786"},{"relation_name":"is_a","term_name":"regulation of transcription elongation by RNA polymerase II","termid":"GO:0034243"},{"relation_name":"is_a","term_name":"positive regulation of transcription by RNA polymerase II","termid":"GO:0045944"},{"relation_name":"positively_regulates","term_name":"transcription elongation by RNA polymerase II","termid":"GO:0006368"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00150":null,"SJAG_01149":null,"SJAG_01151":null,"SJAG_02551":null,"SJAG_03061":null,"SJAG_03118":null,"SJAG_03967":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0006355","GO:0008150","GO:0006351"],"is_obsolete":false,"name":"positive regulation of transcription elongation by RNA polymerase II","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0090040"],"synonyms":[{"name":"positive regulation of RNA elongation from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of gene-specific transcription elongation from RNA polymerase II promoter","type":"related"},{"name":"positive regulation of transcription elongation from RNA polymerase II promoter","type":"exact"}],"termid":"GO:0032968","terms_by_termid":{"GO:0032968":null}}


id: PBO:0044246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cut like homeobox 2 pseudogene 1","termid":"PBO:0044246"}


id: PBO:0049692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxyacid oxidase 2","termid":"PBO:0049692"}


id: GO:0005019
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with platelet-derived growth factor isoform PDGF-BB or PDGF-AB to initiate a change in cell activity.","definition_xrefs":["PMID:1657917"],"direct_ancestors":[{"relation_name":"is_a","term_name":"platelet-derived growth factor receptor activity","termid":"GO:0005017"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0038023","GO:0016301","GO:0004672","GO:0003674","GO:0016740","GO:0140096","GO:0003824"],"is_obsolete":false,"name":"platelet-derived growth factor beta-receptor activity","synonyms":[{"name":"PDGF beta-receptor activity","type":"exact"},{"name":"betaPDGF receptor activity","type":"related"}],"termid":"GO:0005019"}


id: PBO:0090552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongator complex subunit Elp5","termid":"PBO:0090552"}


id: PBO:0017710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase involved in depalmitoylation (predicted)","termid":"PBO:0017710"}


id: SO:0001612
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the C terminus.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated_polypeptide_C_terminal","termid":"SO:0001610"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongated_in_frame_polypeptide_C_terminal","synonyms":[{"name":"elongated in frame polypeptide C terminal","type":"exact"}],"termid":"SO:0001612"}


id: GO:2000493
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of interleukin-18-mediated signaling pathway.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine-mediated signaling pathway","termid":"GO:0001960"},{"relation_name":"is_a","term_name":"regulation of interleukin-18-mediated signaling pathway","termid":"GO:2000492"},{"relation_name":"negatively_regulates","term_name":"interleukin-18-mediated signaling pathway","termid":"GO:0035655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of interleukin-18-mediated signaling pathway","synonyms":[{"name":"negative regulation of interleukin-18-mediated signalling pathway","type":"exact"}],"termid":"GO:2000493"}


id: PBO:0060260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myelin expression factor 2","termid":"PBO:0060260"}


id: GO:0141105
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process in which a symbiont interferes with, inhibits or disrupts a toll-like receptor signaling pathway in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:18327267","PMID:15944308","PMID:17299722"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression of host toll-like receptor signal transduction (obsolete GO:0141105)","synonyms":[{"name":"symbiont-mediated disruption of host toll-like receptor signaling pathway","type":"exact"},{"name":"symbiont-mediated suppression of host toll-like receptor signal transduction","type":"related"},{"name":"symbiont-mediated suppression of host toll-like receptor signaling pathway","type":"exact"}],"termid":"GO:0141105"}


id: GO:0003307
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell, resulting a change in cell state that contributes to the progression of the heart over time.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of Wnt signaling pathway","termid":"GO:0030111"},{"relation_name":"regulates","term_name":"Wnt signaling pathway involved in heart development","termid":"GO:0003306"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of Wnt signaling pathway involved in heart development","synonyms":[{"name":"regulation of Wnt receptor signaling pathway involved in heart development","type":"exact"},{"name":"regulation of Wnt receptor signalling pathway involved in heart development","type":"exact"},{"name":"regulation of Wnt-activated signaling pathway involved in heart development","type":"exact"}],"termid":"GO:0003307"}


id: FYPO:0000574
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which gene silencing is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene expression regulation phenotype during vegetative growth","termid":"FYPO:0001333"},{"relation_name":"is_a","term_name":"abnormal gene expression","termid":"FYPO:0006551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormal gene silencing","synonyms":[{"name":"abnormal gene silencing during mitotic cell cycle","type":"related"},{"name":"abnormal gene silencing during vegetative growth","type":"exact"},{"name":"silencing: abnormal","type":"related"}],"termid":"FYPO:0000574"}


id: PBO:0000710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin Spn2","termid":"PBO:0000710"}


id: PBO:0091011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH-dependent flavin oxidoreductase, implicated in cellular detoxification from family members","termid":"PBO:0091011"}


id: PBO:0031515
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_binding","termid":"PBO:0031515"}


id: PBO:0051074
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy diversity 5/OR15-5B (non-functional)","termid":"PBO:0051074"}


id: MOD:01759
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"The protein modification reporter fragment produced by an Proteome Sciences TMT6plex-130 reagent acylated residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"TMT6plex-130 reporter+balance reagent acylated residue","termid":"MOD:01752"},{"relation_name":"is_a","term_name":"TMT6plex reporter fragment","termid":"MOD:01716"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMT6plex-130 reporter fragment","synonyms":[{"name":"2,6-dimethyl-1-methylidenepiperidinium","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"},{"name":"cysTMT6plex-130 reporter fragment","type":"exact"}],"termid":"MOD:01759"}


id: PBO:0048055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin heavy chain 1 pseudogene 4","termid":"PBO:0048055"}


id: FYPO:0006140
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of 1-eicosenoylglycerophosphocholine (20:1n9) measured in a cell is higher than normal.","definition_xrefs":["PMID:28667014","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased phospholipid level","termid":"FYPO:0001288"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular 1-eicosenoylglycerophosphocholine (20:1n9) level","synonyms":[{"name":"increased 1-eicosenoylglycerophosphocholine (20:1n9) accumulation","type":"related"},{"name":"increased cellular 1-(11Z)-icosenoyl-sn-glycero-3-phosphocholine level","type":"exact"},{"name":"increased cellular 1-eicosenoylglycerophosphocholine (20:1n9) level during mitotic cell cycle","type":"related"},{"name":"increased cellular 1-eicosenoylglycerophosphocholine (20:1n9) level during vegetative growth","type":"exact"}],"termid":"FYPO:0006140"}


id: PBO:0013773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy protein Atg101","termid":"PBO:0013773"}


id: PBO:0046548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group H member 2","termid":"PBO:0046548"}


id: GO:0043318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the rate of cytotoxic T cell degranulation.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of T cell mediated cytotoxicity","termid":"GO:0001915"},{"relation_name":"is_a","term_name":"negative regulation of leukocyte degranulation","termid":"GO:0043301"},{"relation_name":"is_a","term_name":"regulation of cytotoxic T cell degranulation","termid":"GO:0043317"},{"relation_name":"negatively_regulates","term_name":"cytotoxic T cell degranulation","termid":"GO:0043316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"negative regulation of cytotoxic T cell degranulation","synonyms":[{"name":"down regulation of cytotoxic T cell degranulation","type":"exact"},{"name":"down-regulation of cytotoxic T cell degranulation","type":"exact"},{"name":"downregulation of cytotoxic T cell degranulation","type":"exact"},{"name":"inhibition of cytotoxic T cell degranulation","type":"narrow"},{"name":"negative regulation of cytotoxic T cell granule exocytosis","type":"exact"},{"name":"negative regulation of cytotoxic T lymphocyte degranulation","type":"exact"},{"name":"negative regulation of cytotoxic T lymphocyte granule exocytosis","type":"exact"},{"name":"negative regulation of cytotoxic T-cell degranulation","type":"exact"},{"name":"negative regulation of cytotoxic T-cell granule exocytosis","type":"exact"},{"name":"negative regulation of cytotoxic T-lymphocyte degranulation","type":"exact"},{"name":"negative regulation of cytotoxic T-lymphocyte granule exocytosis","type":"exact"}],"termid":"GO:0043318"}


id: FYPO:0005309
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 5 of histone H4 occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H4 acetylation during vegetative growth","termid":"FYPO:0002365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0002494","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased histone H4-K5 acetylation during vegetative growth","synonyms":[{"name":"increased histone H4-K5 acetylation during mitotic cell cycle","type":"related"},{"name":"increased histone H4K5 acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0005309"}


id: PBO:0083549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized ORF YER067W","termid":"PBO:0083549"}


id: GO:0032828
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of natural killer cell differentiation as part of an immune response.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of immune effector process","termid":"GO:0002699"},{"relation_name":"is_a","term_name":"positive regulation of natural killer cell differentiation","termid":"GO:0032825"},{"relation_name":"is_a","term_name":"regulation of natural killer cell differentiation involved in immune response","termid":"GO:0032826"},{"relation_name":"is_a","term_name":"positive regulation of immune response","termid":"GO:0050778"},{"relation_name":"positively_regulates","term_name":"natural killer cell differentiation involved in immune response","termid":"GO:0002325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of natural killer cell differentiation involved in immune response","synonyms":[{"name":"activation of natural killer cell differentiation during immune response","type":"narrow"},{"name":"positive regulation of NK cell differentiation during immune response","type":"related"},{"name":"positive regulation of natural killer cell development involved in immune response","type":"related"},{"name":"positive regulation of natural killer cell differentiation during immune response","type":"related"},{"name":"stimulation of natural killer cell differentiation during immune response","type":"narrow"},{"name":"up regulation of natural killer cell differentiation during immune response","type":"related"},{"name":"up-regulation of natural killer cell differentiation during immune response","type":"related"},{"name":"upregulation of natural killer cell differentiation during immune response","type":"related"}],"termid":"GO:0032828"}


id: PBO:0086204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that associates with mitochondrial ribosome; SWAT-GFP and mCherry fusion proteins localize to the mitochondria; involved in maintenance of telomere length","termid":"PBO:0086204"}


id: GO:0015708
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of silicates from outside of a cell, across the plasma membrane and into the cytosol. Silicates are the salts of silicic acids, and are usually composed of silicon and oxygen (Si[x]O[y]), one or more metals, and possibly hydrogen. Types of silicate include unisilicates, metasilicates and hydrous silicates.","definition_xrefs":["PMID:16572174","GOC:ai","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic anion import across plasma membrane","termid":"GO:0098658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"silicic acid import across plasma membrane","secondary_identifiers":["GO:1902067","GO:0051207"],"synonyms":[{"name":"silicate transport","type":"broad"},{"name":"silicic acid import","type":"related"},{"name":"silicic acid transport","type":"exact"},{"name":"silicon uptake","type":"related"}],"termid":"GO:0015708"}


id: GO:0050232
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + O2 + putrescine = 4-aminobutanal + H2O2 + NH4+.","definition_xrefs":["RHEA:18273"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diamine oxidase activity","termid":"GO:0052597"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"putrescine oxidase activity","secondary_identifiers":["EC:1.4.3.10","MetaCyc:PUTRESCINE-OXIDASE-RXN"],"synonyms":[{"name":"putrescine:oxygen oxidoreductase (deaminating)","type":"exact"}],"termid":"GO:0050232"}


id: PBO:0077669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF receptor superfamily member 14","termid":"PBO:0077669"}


id: PBO:0028055
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_chromatin_silencing_at_subtelomere","termid":"PBO:0028055"}


id: FYPO:0006857
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which methylation of lysine at position 37 of histone H3 is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K37 methylation","termid":"FYPO:0006855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0002494"],"is_obsolete":false,"name":"decreased histone H3-K37 methylation","synonyms":[{"name":"decreased histone H3 K37 methylation","type":"exact"},{"name":"decreased histone H3K37me","type":"exact"},{"name":"decreased histone lysine H3 K37 methylation","type":"exact"},{"name":"reduced histone H3-K37 trimethylation","type":"exact"}],"termid":"FYPO:0006857"}


id: FYPO:0002742
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more iron transport RNAs measured in a cell is higher than normal (i.e. higher than observed in wild-type cells). Iron transport RNAs are transcribed from genes whose products are involved in iron transport.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of transport gene mRNA during vegetative growth","termid":"FYPO:0004490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0006551","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased level of iron transport gene mRNA during vegetative growth","synonyms":[{"name":"increased iron transport gene mRNA accumulation during vegetative growth","type":"related"},{"name":"increased level of iron transport gene RNA during vegetative growth","type":"exact"},{"name":"increased level of iron transport gene mRNA during mitotic cell cycle","type":"related"},{"name":"increased level of iron transport gene transcripts during vegetative growth","type":"exact"}],"termid":"FYPO:0002742"}


id: PBO:0002601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial PPR repeat protein Ppr5","termid":"PBO:0002601"}


id: GO:0010724
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of definitive erythrocyte differentiation. Definitive erythrocyte differentiation occurs as part of the process of definitive hemopoiesis.","definition_xrefs":["GOC:add","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of erythrocyte differentiation","termid":"GO:0045646"},{"relation_name":"regulates","term_name":"definitive erythrocyte differentiation","termid":"GO:0060318"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of definitive erythrocyte differentiation","synonyms":[{"name":"regulation of definitive RBC differentiation","type":"exact"},{"name":"regulation of definitive erythropoiesis","type":"exact"},{"name":"regulation of definitive red blood cell differentiation","type":"exact"}],"termid":"GO:0010724"}


id: GO:0002722
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of B cell cytokine production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of B cell mediated immunity","termid":"GO:0002713"},{"relation_name":"is_a","term_name":"negative regulation of cytokine production involved in immune response","termid":"GO:0002719"},{"relation_name":"is_a","term_name":"regulation of B cell cytokine production","termid":"GO:0002721"},{"relation_name":"negatively_regulates","term_name":"B cell cytokine production","termid":"GO:0002368"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of B cell cytokine production","synonyms":[{"name":"down regulation of B cell cytokine production","type":"exact"},{"name":"down-regulation of B cell cytokine production","type":"exact"},{"name":"downregulation of B cell cytokine production","type":"exact"},{"name":"inhibition of B cell cytokine production","type":"narrow"},{"name":"negative regulation of B lymphocyte cytokine production","type":"exact"},{"name":"negative regulation of B-cell cytokine production","type":"exact"},{"name":"negative regulation of B-lymphocyte cytokine production","type":"exact"}],"termid":"GO:0002722"}


id: PBO:0078127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 9-2","termid":"PBO:0078127"}


id: PBO:0046071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 3 subunit L pseudogene 2","termid":"PBO:0046071"}


id: PBO:0069563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 835, pseudogene","termid":"PBO:0069563"}


id: GO:0019649
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The pathways in which formaldehyde is processed and used as a carbon source for the cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formaldehyde metabolic process","termid":"GO:0046292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"formaldehyde assimilation","termid":"GO:0019649"}


id: GO:1904231
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of succinate dehydrogenase activity.","definition_xrefs":["GOC:BHF","GOC:rl","GO_REF:0000059","PMID:18160053","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of oxidoreductase activity","termid":"GO:0051353"},{"relation_name":"is_a","term_name":"regulation of succinate dehydrogenase activity","termid":"GO:1904229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of succinate dehydrogenase activity","synonyms":[{"name":"activation of fumarate dehydrogenase activity","type":"narrow"},{"name":"activation of fumarate reductase activity","type":"narrow"},{"name":"activation of fumaric hydrogenase activity","type":"narrow"},{"name":"activation of succinate dehydrogenase activity","type":"narrow"},{"name":"activation of succinate oxidoreductase activity","type":"narrow"},{"name":"activation of succinate:(acceptor) oxidoreductase activity","type":"narrow"},{"name":"activation of succinate:acceptor oxidoreductase activity","type":"narrow"},{"name":"activation of succinic acid dehydrogenase activity","type":"narrow"},{"name":"activation of succinodehydrogenase activity","type":"narrow"},{"name":"activation of succinyl dehydrogenase activity","type":"narrow"},{"name":"positive regulation of fumarate dehydrogenase activity","type":"exact"},{"name":"positive regulation of fumarate reductase activity","type":"exact"},{"name":"positive regulation of fumaric hydrogenase activity","type":"exact"},{"name":"positive regulation of succinate oxidoreductase activity","type":"exact"},{"name":"positive regulation of succinate:(acceptor) oxidoreductase activity","type":"exact"},{"name":"positive regulation of succinate:acceptor oxidoreductase activity","type":"exact"},{"name":"positive regulation of succinic acid dehydrogenase activity","type":"exact"},{"name":"positive regulation of succinodehydrogenase activity","type":"exact"},{"name":"positive regulation of succinyl dehydrogenase activity","type":"exact"},{"name":"up regulation of fumarate dehydrogenase activity","type":"exact"},{"name":"up regulation of fumarate reductase activity","type":"exact"},{"name":"up regulation of fumaric hydrogenase activity","type":"exact"},{"name":"up regulation of succinate dehydrogenase activity","type":"exact"},{"name":"up regulation of succinate oxidoreductase activity","type":"exact"},{"name":"up regulation of succinate:(acceptor) oxidoreductase activity","type":"exact"},{"name":"up regulation of succinate:acceptor oxidoreductase activity","type":"exact"},{"name":"up regulation of succinic acid dehydrogenase activity","type":"exact"},{"name":"up regulation of succinodehydrogenase activity","type":"exact"},{"name":"up regulation of succinyl dehydrogenase activity","type":"exact"},{"name":"up-regulation of fumarate dehydrogenase activity","type":"exact"},{"name":"up-regulation of fumarate reductase activity","type":"exact"},{"name":"up-regulation of fumaric hydrogenase activity","type":"exact"},{"name":"up-regulation of succinate dehydrogenase activity","type":"exact"},{"name":"up-regulation of succinate oxidoreductase activity","type":"exact"},{"name":"up-regulation of succinate:(acceptor) oxidoreductase activity","type":"exact"},{"name":"up-regulation of succinate:acceptor oxidoreductase activity","type":"exact"},{"name":"up-regulation of succinic acid dehydrogenase activity","type":"exact"},{"name":"up-regulation of succinodehydrogenase activity","type":"exact"},{"name":"up-regulation of succinyl dehydrogenase activity","type":"exact"},{"name":"upregulation of fumarate dehydrogenase activity","type":"exact"},{"name":"upregulation of fumarate reductase activity","type":"exact"},{"name":"upregulation of fumaric hydrogenase activity","type":"exact"},{"name":"upregulation of succinate dehydrogenase activity","type":"exact"},{"name":"upregulation of succinate oxidoreductase activity","type":"exact"},{"name":"upregulation of succinate:(acceptor) oxidoreductase activity","type":"exact"},{"name":"upregulation of succinate:acceptor oxidoreductase activity","type":"exact"},{"name":"upregulation of succinic acid dehydrogenase activity","type":"exact"},{"name":"upregulation of succinodehydrogenase activity","type":"exact"},{"name":"upregulation of succinyl dehydrogenase activity","type":"exact"}],"termid":"GO:1904231"}


id: GO:0071813
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a lipoprotein particle. A lipoprotein particle, also known as a lipoprotein, is a clathrate complex consisting of a lipid enwrapped in a protein host without covalent binding in such a way that the complex has a hydrophilic outer surface consisting of all the protein and the polar ends of any phospholipids.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-lipid complex binding","termid":"GO:0071814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"lipoprotein particle binding","synonyms":[{"name":"lipoprotein binding","type":"related"},{"name":"plasma lipoprotein binding","type":"related"},{"name":"plasma lipoprotein particle binding","type":"exact"}],"termid":"GO:0071813"}


id: PBO:0089250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCAAT-binding factor, Noc1 related","termid":"PBO:0089250"}


id: MOD:00204
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-leucine residue to D-leucine.","definition_xrefs":["PubMed:12135762","PubMed:1548227","PubMed:10461743","RESID:AA0197","PubMed:1358533","ChEBI:30005"],"direct_ancestors":[{"relation_name":"is_a","term_name":"residues isobaric at 113.084064 Da","termid":"MOD:00306"},{"relation_name":"is_a","term_name":"stereoisomerized residue","termid":"MOD:00664"},{"relation_name":"is_a","term_name":"modified L-leucine residue","termid":"MOD:00911"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-leucine","synonyms":[{"name":"(2R)-2-amino-4-methylpentanoic acid","type":"exact"},{"name":"D-Leu","type":"exact"},{"name":"D-leucine","type":"exact"},{"name":"MOD_RES D-leucine","type":"exact"},{"name":"alpha-aminoisocaproic acid","type":"exact"}],"termid":"MOD:00204"}


id: GO:0004354
data:
  {"annotated_genes":["SJAG_03266"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[113783],"is_not":false,"summary":null,"term":"GO:0004354"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-glutamate + H2O + NADP+ = 2-oxoglutarate + NH3 + NADPH + H+.","definition_xrefs":["EC:1.4.1.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate dehydrogenase [NAD(P)+] activity","termid":"GO:0004353"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03266":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"glutamate dehydrogenase (NADP+) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:GLUTDEHYD-RXN","MetaCyc:GLUTSYNIII-PWY","RHEA:11612"],"synonyms":[{"name":"L-glutamate dehydrogenase","type":"broad"},{"name":"L-glutamate:NADP+ oxidoreductase (deaminating)","type":"related"},{"name":"L-glutamic acid dehydrogenase activity","type":"related"},{"name":"NAD(P)-glutamate dehydrogenase activity","type":"related"},{"name":"NAD(P)H-dependent glutamate dehydrogenase activity","type":"related"},{"name":"dehydrogenase, glutamate (nicotinamide adenine dinucleotide (phosphate))","type":"related"},{"name":"glutamic acid dehydrogenase","type":"broad"},{"name":"glutamic dehydrogenase activity","type":"broad"}],"termid":"GO:0004354","terms_by_termid":{"GO:0004354":null}}


id: PBO:0017736
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae LYS2","termid":"PBO:0017736"}


id: PBO:0060342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin VIIB","termid":"PBO:0060342"}


id: GO:0046922
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of an alpha-L-fucosyl residue from GDP- beta-L-fucose to the serine hydroxy group of a protein acceptor.","definition_xrefs":["EC:2.4.1.221"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fucosyltransferase activity","termid":"GO:0008417"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016757","GO:0140096","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"peptide-O-fucosyltransferase activity","secondary_identifiers":["Reactome:R-HSA-1912349","Reactome:R-HSA-5173192","MetaCyc:2.4.1.221-RXN"],"synonyms":[{"name":"GDP-L-fucose:polypeptide fucosyltransferase activity","type":"related"},{"name":"GDP-beta-L-fucose:polypeptide O-alpha-L-fucosyltransferase activity","type":"related"},{"name":"GDP-fucose protein O-fucosyltransferase activity","type":"related"},{"name":"GDP-fucose:polypeptide fucosyltransferase activity","type":"related"}],"termid":"GO:0046922"}


id: GO:0031433
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to telethonin, a protein found in the Z disc of striated muscle and which is a substrate of the titin kinase.","definition_xrefs":["GOC:mah","PMID:10481174"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeletal protein binding","termid":"GO:0008092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0008092","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"telethonin binding","termid":"GO:0031433"}


id: GO:0046832
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of RNA from the nucleus into the cytoplasm.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of nucleobase-containing compound transport","termid":"GO:0032240"},{"relation_name":"is_a","term_name":"negative regulation of nucleocytoplasmic transport","termid":"GO:0046823"},{"relation_name":"is_a","term_name":"regulation of RNA export from nucleus","termid":"GO:0046831"},{"relation_name":"negatively_regulates","term_name":"RNA export from nucleus","termid":"GO:0006405"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006913"}],"interesting_parent_ids":["GO:0006810","GO:0006913","GO:0008150"],"is_obsolete":false,"name":"negative regulation of RNA export from nucleus","synonyms":[{"name":"down regulation of RNA export from nucleus","type":"exact"},{"name":"down-regulation of RNA export from nucleus","type":"exact"},{"name":"downregulation of RNA export from nucleus","type":"exact"},{"name":"inhibition of RNA export from nucleus","type":"narrow"},{"name":"negative regulation of RNA export from cell nucleus","type":"exact"},{"name":"negative regulation of RNA export out of nucleus","type":"exact"},{"name":"negative regulation of RNA transport from nucleus to cytoplasm","type":"exact"},{"name":"negative regulation of RNA-nucleus export","type":"exact"}],"termid":"GO:0046832"}


id: GO:1905058
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Any calcium-induced calcium release activity that is involved in regulation of postsynaptic cytosolic calcium ion concentration.","definition_xrefs":["GO_REF:0000061","GOC:TermGenie","PMID:23639769"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium-induced calcium release activity","termid":"GO:0048763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"calcium-induced calcium release activity involved in regulation of postsynaptic cytosolic calcium ion concentration","synonyms":[{"name":"calcium-induced calcium release activity involved in regulation of postsynaptic cytosolic calcium levels","type":"exact"}],"termid":"GO:1905058"}


id: PBO:0089648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial DUF3818 and PXA domain conserved fungal protein","termid":"PBO:0089648"}


id: PBO:0085158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleotide exchange factor for Gsp1p; localizes to the nucleus, required for nucleocytoplasmic trafficking of macromolecules; suppressor of the pheromone response pathway; potentially phosphorylated by Cdc28p; human homolog of the RAN GEF, RCC1, can complement a temperature sensitive point mutant","termid":"PBO:0085158"}


id: GO:2001128
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a methane from a methylamine.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methanogenesis","termid":"GO:0015948"},{"relation_name":"is_a","term_name":"methylamine metabolic process","termid":"GO:0030416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"methane biosynthetic process from methylamine","termid":"GO:2001128"}


id: GO:0003169
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of veins of the heart are generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"venous blood vessel morphogenesis","termid":"GO:0048845"},{"relation_name":"is_a","term_name":"coronary vasculature morphogenesis","termid":"GO:0060977"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"coronary vein morphogenesis","termid":"GO:0003169"}


id: PBO:0069176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 430, pseudogene","termid":"PBO:0069176"}


id: PBO:0067602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 766, pseudogene","termid":"PBO:0067602"}


id: PBO:0044705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDX5 pseudogene 1","termid":"PBO:0044705"}


id: PBO:0003269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase III complex subunit Rpc31","termid":"PBO:0003269"}


id: GO:0060574
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process, independent of morphogenetic (shape) change, that is required for a columna/cuboidal epithelial cell of the intestine to attain its fully functional state. A columnar/cuboidal epithelial cell of the intestine mature as they migrate from the intestinal crypt to the villus.","definition_xrefs":["GOC:dph","PMID:18824147"],"direct_ancestors":[{"relation_name":"is_a","term_name":"columnar/cuboidal epithelial cell maturation","termid":"GO:0002069"},{"relation_name":"part_of","term_name":"intestinal epithelial cell development","termid":"GO:0060576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intestinal epithelial cell maturation","termid":"GO:0060574"}


id: PBO:0084018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycosylated integral ER membrane protein of unknown function; forms an ER-membrane associated protein complex with Emp65p; member of the SUN-like family of proteins; genetic interactions suggest a role in folding of ER membrane proteins; required for nuclear envelope localization of Mps3p","termid":"PBO:0084018"}


id: GO:0072366
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of a cellular ketone metabolic process by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:mah","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cellular ketone metabolic process by positive regulation of transcription from RNA polymerase II promoter (obsolete GO:0072366)","synonyms":[{"name":"regulation of cellular ketone metabolic process by positive regulation of transcription from an RNA polymerase II promoter","type":"exact"},{"name":"regulation of cellular ketone metabolism by positive regulation of transcription from an RNA polymerase II promoter","type":"exact"}],"termid":"GO:0072366"}


id: FYPO:0005015
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which rRNA modification, the covalent alteration of one or more nucleotides within an rRNA molecule, is abnormal.","definition_xrefs":["GO:0000154","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal RNA modification","termid":"FYPO:0000370"},{"relation_name":"is_a","term_name":"abnormal RNA processing","termid":"FYPO:0001553"},{"relation_name":"is_a","term_name":"abnormal ribosome biogenesis","termid":"FYPO:0005017"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0006551","FYPO:0000294","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal rRNA modification","synonyms":[{"name":"abnormal rRNA modification during mitotic cell cycle","type":"related"},{"name":"abnormal rRNA modification during vegetative growth","type":"exact"}],"termid":"FYPO:0005015"}


id: FYPO:0001147
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A biological process phenotype in which the observed mating efficiency, as determined by counting zygotes, asci, and sometimes spores, is normal (i.e. the same as in wild-type cells).","definition_xrefs":["PomBase:al","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population phenotype","termid":"FYPO:0000003"},{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000003"],"is_obsolete":false,"name":"normal mating efficiency","termid":"FYPO:0001147"}


id: PBO:0049090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 146","termid":"PBO:0049090"}


id: PBO:0109459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3 Meu34, unknown biological role","termid":"PBO:0109459"}


id: GO:0014890
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process, occurring in smooth muscle, that is characterized by a decrease in protein content, fiber diameter, force production and fatigue resistance in response to different conditions such as starvation, aging and disuse.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"smooth muscle adaptation","termid":"GO:0014805"},{"relation_name":"is_a","term_name":"muscle atrophy","termid":"GO:0014889"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"smooth muscle atrophy","termid":"GO:0014890"}


id: GO:0050166
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-pantoate + NAD+ = (R)-4-dehydropantoate + H+ + NADH.","definition_xrefs":["RHEA:23000","EC:1.1.1.106"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"pantoate 4-dehydrogenase activity","secondary_identifiers":["MetaCyc:PANTOATE-4-DEHYDROGENASE-RXN","KEGG_REACTION:R02471"],"synonyms":[{"name":"(R)-pantoate:NAD+ 4-oxidoreductase activity","type":"related"},{"name":"D-pantoate:NAD+ 4-oxidoreductase activity","type":"related"},{"name":"panthothenase activity","type":"related"},{"name":"pantoate dehydrogenase activity","type":"related"}],"termid":"GO:0050166"}


id: PBO:0011147
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Homologue of Parp Zn finger","termid":"PBO:0011147"}


id: PBO:0075945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stromal antigen 3","termid":"PBO:0075945"}


id: GO:0170053
data:
  {"annotated_genes":["SJAG_00686","SJAG_05212","SJAG_01076","SJAG_04682"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[112881],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140656"},{"annotations":[100994,85828],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044692"},{"annotations":[88401],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061632"}]},"cv_name":"molecular_function","definition":"Binds to and increases the activity of a nuclease.","definition_xrefs":["PMID:24736845"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00686":null,"SJAG_01076":null,"SJAG_04682":null,"SJAG_05212":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0003674","GO:0140677","GO:0098772","GO:0030234"],"is_obsolete":false,"name":"nuclease activator activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0170053","terms_by_termid":{"GO:0044692":null,"GO:0061632":null,"GO:0140656":null}}


id: PBO:0076423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein associated factor 10","termid":"PBO:0076423"}


id: PBO:0028165
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-exon_skipping","termid":"PBO:0028165"}


id: PBO:0061467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor binding factor 2 pseudogene 2","termid":"PBO:0061467"}


id: PBO:0062251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily BR member 1 pseudogene","termid":"PBO:0062251"}


id: GO:0016995
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cholesterol + O2 = cholest-5-en-3-one + H2O2.","definition_xrefs":["RHEA:32183"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor","termid":"GO:0016899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"cholesterol oxidase activity","secondary_identifiers":["KEGG_REACTION:R01459","MetaCyc:CHOLESTEROL-OXIDASE-RXN","EC:1.1.3.6"],"synonyms":[{"name":"3beta-hydroxy steroid oxidoreductase activity","type":"related"},{"name":"3beta-hydroxysteroid:oxygen oxidoreductase activity","type":"related"},{"name":"cholesterol- O2 oxidoreductase activity","type":"related"},{"name":"cholesterol-O2 oxidoreductase activity","type":"related"},{"name":"cholesterol:oxygen oxidoreductase activity","type":"related"}],"termid":"GO:0016995"}


id: GO:0070228
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the occurrence or rate of lymphocyte death by apoptotic process.","definition_xrefs":["ISBN:0781765196","GOC:add","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte apoptotic process","termid":"GO:2000106"},{"relation_name":"regulates","term_name":"lymphocyte apoptotic process","termid":"GO:0070227"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of lymphocyte apoptotic process","synonyms":[{"name":"regulation of lymphocyte apoptosis","type":"narrow"}],"termid":"GO:0070228"}


id: PBO:0081487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 383","termid":"PBO:0081487"}


id: PBO:0080161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"variable charge X-linked 3A","termid":"PBO:0080161"}


id: PBO:0077610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMSB4X pseudogene 1","termid":"PBO:0077610"}


id: GO:0016633
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-galactono-1,4-lactone + 2 ferricytochrome c = L-ascorbate + 2 ferrocytochrome c.","definition_xrefs":["EC:1.3.2.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, cytochrome as acceptor","termid":"GO:0016632"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"galactonolactone dehydrogenase activity","secondary_identifiers":["MetaCyc:GALACTONOLACTONE-DEHYDROGENASE-RXN","RHEA:32367"],"synonyms":[{"name":"GLDHase activity","type":"related"},{"name":"GLDase activity","type":"related"},{"name":"L-galactono-1,4-lactone dehydrogenase activity","type":"exact"},{"name":"L-galactono-1,4-lactone:ferricytochrome-c oxidoreductase activity","type":"related"},{"name":"L-galactono-gamma-lactone dehydrogenase activity","type":"related"},{"name":"L-galactono-gamma-lactone:ferricytochrome-c oxidoreductase activity","type":"related"},{"name":"L-galactonolactone dehydrogenase activity","type":"related"}],"termid":"GO:0016633"}


id: RO:0009003
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"\\\"immersed in\\\" is a relation between a (physical) entity and a fluid substance in which the entity is wholely or substantially surrounded by the substance.","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immersed_in","termid":"RO:0009003"}


id: GO:0100056
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates phosphatidylserine biosynthetic process.","definition_xrefs":["GOC:cjm","GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of phosphatidylserine biosynthetic process by transcription from RNA polymerase II promoter (obsolete GO:0100056)","termid":"GO:0100056"}


id: PBO:0004855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sporulation specific 1,3-beta-glucanosyltransferase Gas4","termid":"PBO:0004855"}


id: GO:0033203
data:
  {"annotated_genes":["SJAG_03495"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[114219],"is_not":false,"summary":null,"term":"GO:0033203"}]},"cv_name":"cellular_component","definition":"A homohexameric protein complex that possesses DNA helicase activity; associates with DNA polymerase alpha-primase and translocates in the 5' to 3' direction.","definition_xrefs":["PMID:9341218"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA helicase complex","termid":"GO:0033202"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03495":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"DNA helicase A complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0033203","terms_by_termid":{"GO:0033203":null}}


id: PBO:0055571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3007","termid":"PBO:0055571"}


id: PBO:0070302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY1 pseudogene 8","termid":"PBO:0070302"}


id: GO:0000384
data:
  {"annotated_genes":["SJAG_01152"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100938],"is_not":false,"summary":null,"term":"GO:0000384"}]},"cv_name":"molecular_function","definition":"Catalysis of the first transesterification reaction of spliceosomal mRNA splicing. The intron branch site adenosine is the nucleophile attacking the 5' splice site, resulting in cleavage at this position. In cis splicing, this is the step that forms a lariat structure of the intron RNA, while it is still joined to the 3' exon.","definition_xrefs":["ISBN:0879695897","PMID:19239890","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic activity, acting on RNA","termid":"GO:0140098"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01152":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0140098"],"is_obsolete":false,"name":"first spliceosomal transesterification activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"lariat formation, 5'-splice site cleavage","type":"related"}],"termid":"GO:0000384","terms_by_termid":{"GO:0000384":null}}


id: PBO:0079414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta 8 class VIII pseudogene 8","termid":"PBO:0079414"}


id: FYPO:0006732
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to transcribed regions of chromatin is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to chromatin during vegetative growth","termid":"FYPO:0001509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000138","FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal protein localization to chromatin distal to replication origin","synonyms":[{"name":"normal protein localisation to chromatin distal to replication origin","type":"exact"},{"name":"normal protein localization to chromatin distal to replication origin during mitotic cell cycle","type":"related"},{"name":"normal protein localization to chromatin distal to replication origin during vegetative growth","type":"exact"}],"termid":"FYPO:0006732"}


id: PBO:0072916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scavenger receptor class B member 1","termid":"PBO:0072916"}


id: GO:0048931
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a glial cell in the posterior lateral line nerve.","definition_xrefs":["PMID:15832385"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lateral line nerve glial cell differentiation","termid":"GO:0048895"},{"relation_name":"part_of","term_name":"posterior lateral line nerve development","termid":"GO:0048918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"posterior lateral line nerve glial cell differentiation","termid":"GO:0048931"}


id: PBO:0002108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high-affinity import carrier for pyridoxine, pyridoxal, and pyridoxamine Bsu1","termid":"PBO:0002108"}


id: GO:2000081
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of canonical Wnt signaling pathway modulating the rate or frequency of pancreatic B cell proliferation.","definition_xrefs":["GOC:obol","GOC:yaf"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of canonical Wnt signaling pathway involved in controlling type B pancreatic cell proliferation (obsolete GO:2000081)","synonyms":[{"name":"positive regulation of canonical Wnt receptor signaling pathway involved in controlling pancreatic B cell proliferation","type":"exact"},{"name":"positive regulation of canonical Wnt receptor signaling pathway involved in controlling type B pancreatic cell proliferation","type":"exact"},{"name":"positive regulation of canonical Wnt receptor signaling pathway involved in pancreatic beta cell proliferation","type":"exact"},{"name":"positive regulation of canonical Wnt receptor signalling pathway involved in controlling pancreatic B cell proliferation","type":"exact"},{"name":"positive regulation of canonical Wnt receptor signalling pathway involved in controlling type B pancreatic cell proliferation","type":"exact"},{"name":"positive regulation of canonical Wnt-activated signaling pathway involved in controlling type B pancreatic cell proliferation","type":"exact"}],"termid":"GO:2000081"}


id: GO:0110086
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cytoskeletal structure composed of actin filaments, myosin, and myosin-associated proteins that forms beneath the plasma membrane of many cells, including animal cells and yeast cells, in a plane perpendicular to the axis of the meiotic spindle, i.e. the cell division plane. Ring contraction is associated with centripetal growth of the membrane that divides the cytoplasm of the two future daughter cells. In animal cells, the meiotic contractile ring is located inside the plasma membrane at the location of the cleavage furrow. In fungal cells, the meiotic contractile ring forms beneath the plasma membrane of the prospore envelope in preparation for completing cytokinesis.","definition_xrefs":["PMID:22526418","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actomyosin contractile ring","termid":"GO:0005826"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005938"},{"rel_name":"is_a","termid":"GO:0070938"}],"interesting_parent_ids":["GO:0005575","GO:0005938","GO:0070938","GO:0015629","GO:0005737"],"is_obsolete":false,"name":"meiotic actomyosin contractile ring","termid":"GO:0110086"}


id: PBO:0085754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein kinase; stabilizes several plasma membrane amino acid transporters by antagonizing their ubiquitin-mediated degradation; phosphorylates Aly2p; negatively regulates Ldb19p-mediated endocytosis by phosphorylating Ldb19p; positively regulates activity of the three Mep ammonium transport proteins; mediates inhibitory phosphorylation of Mep2p and Par32p; TOR complex negatively regulates Npr1p activity; NPR1 has a paralog, PRR2, that arose from the whole genome duplication","termid":"PBO:0085754"}


id: PBO:0082341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DEAD-box RNA helicase with strand-annealing activity; promotes eIF4F-dependent 48S translation preinitiation complex (PIC) assembly, stimulating recruitment of mRNAs with long, structured 5'-UTRs; cooperates with Dbp1p in PIC attachment and scanning; ATPase activity stimulated by mRNA cap-associated factor binding; directly binds eIF4G; role in spliceosomal complex disassembly; mutation in human homolog DBY associated with male infertility; human homolog DDX3X complements the null","termid":"PBO:0082341"}


id: GO:0007585
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"respiratory gaseous exchange by respiratory system","synonyms":[{"name":"breathing","type":"broad"},{"name":"respiration","type":"broad"}],"termid":"GO:0007585"}


id: GO:1905231
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a borneol stimulus.","definition_xrefs":["PMID:26593909","GOC:TermGenie","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to lipid","termid":"GO:0071396"},{"relation_name":"is_a","term_name":"response to borneol","termid":"GO:1905230"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to borneol","termid":"GO:1905231"}


id: GO:0016005
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases the activity of the enzyme phospholipase A2.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipase activator activity","termid":"GO:0016004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0030234","GO:0140677","GO:0098772","GO:0003674"],"is_obsolete":false,"name":"phospholipase A2 activator activity","termid":"GO:0016005"}


id: PBO:0057476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 595","termid":"PBO:0057476"}


id: PBO:0058241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4528","termid":"PBO:0058241"}


id: PR:O59701
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cys11 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59701"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine synthase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC36.04","synonyms":[{"name":"CSase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"O-acetylserine (thiol)-lyase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"O-acetylserine sulfhydrylase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"OAS-TL 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cys11","type":"exact"}],"termid":"PR:O59701"}


id: GO:0090347
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of the chemical reactions and pathways involving organohalogen compounds, as carried out by individual cells.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular metabolic process","termid":"GO:0031323"},{"relation_name":"regulates","term_name":"cellular organohalogen metabolic process","termid":"GO:0090345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular organohalogen metabolic process","termid":"GO:0090347"}


id: PBO:0029117
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_cycle_process","termid":"PBO:0029117"}


id: PBO:0040139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"achaete-scute family bHLH transcription factor 2","termid":"PBO:0040139"}


id: PBO:0002450
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"possible gene merge, unusual domain combination","termid":"PBO:0002450"}


id: GO:0062184
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: O2 + reduced [NADPH--hemoprotein reductase] + testosterone = 16beta,17beta-dihydroxyandrost-4-en-3-one + H+ + H2O + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["PMID:21289075","RHEA:46304"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"testosterone 16-beta-hydroxylase activity","termid":"GO:0062184"}


id: PR:Q9P7I2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cmk1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7I2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium/calmodulin-dependent protein kinase type I (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPACUNK12.02c","synonyms":[{"name":"CaMK-I (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cmk1","type":"exact"}],"termid":"PR:Q9P7I2"}


id: PBO:0050092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1 pseudogene 1","termid":"PBO:0050092"}


id: MOD:00509
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["PubMed:6273432","Unimod:141","PubMed:12643539"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amidination of lysines or N-terminal amines with methyl acetimidate","synonyms":[{"name":"Amidine","type":"related"},{"name":"amidination of lysines or N-terminal amines with methyl acetimidate","type":"related"}],"termid":"MOD:00509"}


id: FYECO:0000304
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which tert-butyl hydroperoxide was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ TBHP","synonyms":[{"name":"TBH","type":"exact"},{"name":"tert-butyl hydroperoxide","type":"exact"}],"termid":"FYECO:0000304"}


id: PBO:0085787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unconfirmed function; similar to cell surface flocculin Flo11p; ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression; in W303 strain one continuous open reading frame comprising of YDL037C, the intergenic region and YDL039C encodes the gene IMI1","termid":"PBO:0085787"}


id: GO:0160168
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=9 symmetry. The T=9 capsid is composed of 12 pentameric and 80 hexameric capsomeres.","definition_xrefs":["PMID:37138077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"icosahedral viral capsid","termid":"GO:0019030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"T=9 icosahedral viral capsid","secondary_identifiers":["VZ:5316"],"termid":"GO:0160168"}


id: GO:0016877
data:
  {"annotated_genes":["SJAG_00947","SJAG_00645","SJAG_03950","SJAG_05032","SJAG_00604","SJAG_03909","SJAG_03813","SJAG_00853","SJAG_02082","SJAG_00878","SJAG_02741","SJAG_01524","SJAG_02084","SJAG_03896","SJAG_03471"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[112166],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003987"},{"annotations":[107769],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019778"},{"annotations":[107770],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019779"},{"annotations":[111825],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031956"},{"annotations":[101678,109496],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090432"},{"annotations":[92592,90709],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019781"},{"annotations":[101679],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090434"},{"annotations":[111826],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0050203"},{"annotations":[101680],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090433"},{"annotations":[86043,111040],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004775"},{"annotations":[100566,92312,93864],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019948"},{"annotations":[99859],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004839"},{"annotations":[88012],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008641"},{"annotations":[92100],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042292"}]},"cv_name":"molecular_function","definition":"Catalysis of the joining of two molecules via a carbon-sulfur bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.","definition_xrefs":["EC:6.2.-.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity","termid":"GO:0016874"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00604":null,"SJAG_00645":null,"SJAG_00853":null,"SJAG_00878":null,"SJAG_00947":null,"SJAG_01524":null,"SJAG_02082":null,"SJAG_02084":null,"SJAG_02741":null,"SJAG_03471":null,"SJAG_03813":null,"SJAG_03896":null,"SJAG_03909":null,"SJAG_03950":null,"SJAG_05032":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"ligase activity, forming carbon-sulfur bonds","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ligase activity, forming carbon-sulphur bonds","type":"exact"}],"termid":"GO:0016877","terms_by_termid":{"GO:0003987":null,"GO:0004775":null,"GO:0004839":null,"GO:0008641":null,"GO:0019778":null,"GO:0019779":null,"GO:0019781":null,"GO:0019948":null,"GO:0031956":null,"GO:0042292":null,"GO:0050203":null,"GO:0090432":null,"GO:0090433":null,"GO:0090434":null}}


id: PBO:0043167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ciliogenesis associated kinase 1","termid":"PBO:0043167"}


id: PBO:0079176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis specific protein Y-linked 5, pseudogene","termid":"PBO:0079176"}


id: GO:1905295
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of neural crest cell fate specification.","definition_xrefs":["PMID:15073157","GOC:rl","GOC:BHF","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell fate specification","termid":"GO:0042659"},{"relation_name":"is_a","term_name":"regulation of neural crest formation","termid":"GO:0090299"},{"relation_name":"is_a","term_name":"regulation of neural crest cell differentiation","termid":"GO:1905292"},{"relation_name":"regulates","term_name":"neural crest cell fate specification","termid":"GO:0014036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of neural crest cell fate specification","termid":"GO:1905295"}


id: PBO:0029416
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_palmitoylation_during_meiosis","termid":"PBO:0029416"}


