# terms

id: PBO:0068556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 7, pseudogene","termid":"PBO:0068556"}


id: GO:0048472
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: O-phospho-L-threonine + H+ = (R)-1-aminopropan-2-yl phosphate + CO2.","definition_xrefs":["EC:4.1.1.81","RHEA:11492"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"threonine-phosphate decarboxylase activity","secondary_identifiers":["KEGG_REACTION:R06530","MetaCyc:4.1.1.81-RXN"],"synonyms":[{"name":"CobD","type":"related"},{"name":"L-threonine O-3-phosphate carboxy-lyase [(R)-1-aminopropan-2-yl-phosphate-forming]","type":"related"},{"name":"L-threonine O-3-phosphate carboxy-lyase activity","type":"related"},{"name":"L-threonine-O-3-phosphate decarboxylase activity","type":"exact"}],"termid":"GO:0048472"}


id: SO:0000861
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript that is capped.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"adjacent_to","term_name":"cap","termid":"SO:0000581"},{"relation_name":"has_quality","term_name":"capped","termid":"SO:0000146"},{"relation_name":"is_a","term_name":"primary_transcript","termid":"SO:0000185"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capped_primary_transcript","synonyms":[{"name":"capped primary transcript","type":"exact"}],"termid":"SO:0000861"}


id: GO:0099160
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The intermediate filament cytoskeleton that is part of a postsynapse.","definition_xrefs":["GOC:dos","PMID:25869803"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intermediate filament cytoskeleton","termid":"GO:0045111"},{"relation_name":"is_a","term_name":"postsynaptic cytoskeleton","termid":"GO:0099571"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"postsynaptic intermediate filament cytoskeleton","termid":"GO:0099160"}


id: PBO:0068803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 40, pseudogene","termid":"PBO:0068803"}


id: PBO:0072391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS27A pseudogene 17","termid":"PBO:0072391"}


id: GO:1900319
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of methane biosynthetic process from dimethylamine.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of amine metabolic process","termid":"GO:0033239"},{"relation_name":"is_a","term_name":"regulation of methane biosynthetic process from dimethylamine","termid":"GO:1900318"},{"relation_name":"is_a","term_name":"negative regulation of alkane biosynthetic process","termid":"GO:1901578"},{"relation_name":"is_a","term_name":"negative regulation of cellular respiration","termid":"GO:1901856"},{"relation_name":"negatively_regulates","term_name":"methane biosynthetic process from dimethylamine","termid":"GO:2001129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"negative regulation of methane biosynthetic process from dimethylamine","synonyms":[{"name":"down regulation of methane biosynthetic process from dimethylamine","type":"exact"},{"name":"down-regulation of methane biosynthetic process from dimethylamine","type":"exact"},{"name":"downregulation of methane biosynthetic process from dimethylamine","type":"exact"},{"name":"inhibition of methane biosynthetic process from dimethylamine","type":"narrow"}],"termid":"GO:1900319"}


id: GO:0032609
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of interferon-gamma due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Interferon-gamma is also known as type II interferon.","definition_xrefs":["PMID:15546383","GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"type II interferon production","secondary_identifiers":["GO:0042095","GO:0072643"],"synonyms":[{"name":"IFNG production","type":"exact"},{"name":"interferon-gamma biosynthetic process","type":"narrow"},{"name":"interferon-gamma production","type":"exact"},{"name":"interferon-gamma secretion","type":"narrow"},{"name":"type II IFN production","type":"exact"}],"termid":"GO:0032609"}


id: PBO:0011957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase allele types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_deletion","termid":"PBO:0011957"}


id: PATO:0002204
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Handedness where the organism exhibits no overall dominance in the use of right or left hand or foot in the performance of tasks that require one hand or foot or a dominant hand or foot.","definition_xrefs":["birnlex:2042"],"direct_ancestors":[{"relation_name":"is_a","term_name":"handedness","termid":"PATO:0002201"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ambidextrous handedness","termid":"PATO:0002204"}


id: GO:0006392
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The extension of an RNA molecule after transcription initiation and promoter clearance at mitochondrial promoter by the addition of ribonucleotides catalyzed by a mitchondrial RNA polymerase.","definition_xrefs":["GOC:mah","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial RNA metabolic process","termid":"GO:0000959"},{"relation_name":"is_a","term_name":"DNA-templated transcription elongation","termid":"GO:0006354"},{"relation_name":"part_of","term_name":"mitochondrial transcription","termid":"GO:0006390"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0140053"},{"rel_name":"part_of","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0140053","GO:0006351","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"transcription elongation by mitochondrial RNA polymerase","synonyms":[{"name":"RNA elongation from mitochondrial promoter","type":"exact"},{"name":"transcription elongation from mitochondrial promoter","type":"exact"}],"termid":"GO:0006392"}


id: PBO:0052381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member 23","termid":"PBO:0052381"}


id: PR:O94341
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1271.08c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94341"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1271.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1271.08c","synonyms":[{"name":"Spom972h-SPBC1271.08c","type":"exact"}],"termid":"PR:O94341"}


id: GO:0003328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of a cell to a pancreatic D cell fate and its capacity to differentiate into a pancreatic D cell. A delta cell is a cell of the pancreas that produces somatostatin.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell fate commitment","termid":"GO:0072148"},{"relation_name":"part_of","term_name":"pancreatic D cell differentiation","termid":"GO:0003311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pancreatic D cell fate commitment","termid":"GO:0003328"}


id: PBO:0053167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukocyte cell derived chemotaxin 2","termid":"PBO:0053167"}


id: GO:2000168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of planar cell polarity pathway involved in neural tube closure.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of Wnt signaling pathway, planar cell polarity pathway","termid":"GO:0141113"},{"relation_name":"is_a","term_name":"regulation of planar cell polarity pathway involved in neural tube closure","termid":"GO:2000167"},{"relation_name":"negatively_regulates","term_name":"planar cell polarity pathway involved in neural tube closure","termid":"GO:0090179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of planar cell polarity pathway involved in neural tube closure","termid":"GO:2000168"}


id: PBO:0043595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type XXV alpha 1 chain","termid":"PBO:0043595"}


id: FYPO:0002826
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which gamma-tubulin complex assembly is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein complex assembly during vegetative growth","termid":"FYPO:0001215"},{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal gamma-tubulin complex assembly","synonyms":[{"name":"normal gamma-tubulin complex assembly during mitotic cell cycle","type":"related"},{"name":"normal gamma-tubulin complex assembly during vegetative growth","type":"exact"}],"termid":"FYPO:0002826"}


id: FYPO:0007551
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin is increased during a cellular response to hydroxyurea.","definition_xrefs":["PomBase:mah","PMID:19158664"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to chromatin during vegetative growth","termid":"FYPO:0003011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"increased protein localization to chromatin during cellular response to hydroxyurea","synonyms":[{"name":"increased protein localisation to chromatin during cellular response to hydroxyurea","type":"exact"},{"name":"increased protein localization to chromatin during cellular response to HU","type":"exact"},{"name":"increased protein localization to chromatin during cellular response to hydroxyurea during mitotic cell cycle","type":"related"},{"name":"increased protein localization to chromatin during cellular response to hydroxyurea during vegetative growth","type":"exact"}],"termid":"FYPO:0007551"}


id: PR:G2TRN5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC25B8.20 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRN5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C25B8.20 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25B8.20","synonyms":[{"name":"Spom972h-SPAC25B8.20","type":"exact"}],"termid":"PR:G2TRN5"}


id: PBO:0080825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YAE1 maturation factor of ABCE1","termid":"PBO:0080825"}


id: PBO:0076653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T-box transcription factor 10","termid":"PBO:0076653"}


id: GO:1904353
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of telomere capping.","definition_xrefs":["GO_REF:0000058","GOC:BHF","GOC:BHF_telomere","GOC:TermGenie","GOC:nc","PMID:23959892"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of telomere maintenance","termid":"GO:0032204"},{"relation_name":"regulates","term_name":"telomere capping","termid":"GO:0016233"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0032200"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0032200","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"regulation of telomere capping","synonyms":[{"name":"regulation of telomere end protection","type":"exact"}],"termid":"GO:1904353"}


id: PR:O74366
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A general transcription factor IIH subunit 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02813","PANTHER:PTHR12831:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II transcription factor B subunit 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC30B4.07c","secondary_identifiers":["UniProtKB:O74366"],"synonyms":[{"name":"RNA polymerase II transcription factor B 34 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNA polymerase II transcription factor B p34 subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-GTF2H3","type":"exact"}],"termid":"PR:O74366"}


id: PBO:0028651
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_rRNA_precursor_level","termid":"PBO:0028651"}


id: GO:0008018
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete structural protein of chorion (sensu Drosophila) (obsolete GO:0008018)","synonyms":[{"name":"structural protein of chorion (sensu Drosophila)","type":"exact"}],"termid":"GO:0008018"}


id: PBO:0088582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S5","termid":"PBO:0088582"}


id: PBO:0088489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal export complex protein Arx1, peptidase family","termid":"PBO:0088489"}


id: PBO:0001807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amino acid permease, unknown 3 (predicted)","termid":"PBO:0001807"}


id: GO:0102512
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: delphinidin 3-O-beta-D-glucoside + 1-O-vanilloyl-beta-D-glucose = delphinidin 3-O-beta-D-glucoside-5-O-beta-D-glucoside betaine + vanillate + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete delphinidin 3-O-glucoside 5-O-glucosyltransferase (acyl-glucose dependent) activity (obsolete GO:0102512)","termid":"GO:0102512"}


id: PBO:0042232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin Y like 4 (pseudogene)","termid":"PBO:0042232"}


id: FYPO:0004323
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at positions 5, 8, 12 and 16 of histone H4 at the centromere central core occurs to a greater extent than normal.","definition_xrefs":["PMID:18493607","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete increased histone H4-K5, H4-K8, H4-K12 and H4-K16 acetylation at centromere central core during vegetative growth (obsolete FYPO:0004323)","synonyms":[{"name":"increased histone H4 acetylation (K5, K8, K12 and K16) at centromere central core during vegetative growth","type":"exact"},{"name":"increased histone H4-K5, H4-K8, H4-K12 and H4-K16 acetylation at centromere central core during mitotic cell cycle","type":"related"},{"name":"increased histone H4-K5/8/12/16 acetylation at centromere central core during vegetative growth","type":"exact"},{"name":"increased histone H4K5, H4K8, H4K12 and H4K16 acetylation at centromere central core during vegetative growth","type":"exact"}],"termid":"FYPO:0004323"}


id: PBO:0071641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36 pseudogene 5","termid":"PBO:0071641"}


id: GO:0005962
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Mitochondrial complex that possesses isocitrate dehydrogenase (NAD+) activity.","definition_xrefs":["GOC:mah","GOC:mtg_sensu"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial isocitrate dehydrogenase complex (NAD+) (obsolete GO:0005962)","termid":"GO:0005962"}


id: GO:0048393
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into an intermediate mesoderm cell.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesodermal cell fate commitment","termid":"GO:0001710"},{"relation_name":"part_of","term_name":"intermediate mesodermal cell differentiation","termid":"GO:0048392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intermediate mesodermal cell fate commitment","synonyms":[{"name":"intermediate mesoderm cell fate commitment","type":"exact"}],"termid":"GO:0048393"}


id: FYPO:0002697
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of methylenetetrahydrofolate reductase (NADPH) activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased oxidoreductase activity","termid":"FYPO:0000690"},{"relation_name":"is_a","term_name":"abnormal methylenetetrahydrofolate reductase (NADPH) activity","termid":"FYPO:0002695"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000652","FYPO:0000661","FYPO:0001985","FYPO:0000654"],"is_obsolete":false,"name":"decreased methylenetetrahydrofolate reductase (NADPH) activity","synonyms":[{"name":"reduced methylenetetrahydrofolate reductase (NADPH) activity","type":"exact"}],"termid":"FYPO:0002697"}


id: PBO:0003109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin alpha 2","termid":"PBO:0003109"}


id: GO:0018081
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The synthesis of (2R,6R)-lanthionine, sn-(2S,6R)-lanthionine or (2S,3S,6R)-3-methyl-lanthionine, forming an intra-polypeptide cross-link between peptidyl-cysteine, and peptidyl-serine or peptidyl-threonine; dehydration of the serine or threonine residue to the alpha,beta-unsaturated amino acid is the first step; a bond then forms between the ethylene (ethene) group thus formed and the sulfur atom of a cysteine, with the inversion of the configuration of the alpha carbon of the serine or threonine occurring during the process.","definition_xrefs":["ISBN:0198547684","RESID:AA0111","RESID:AA0112","RESID:AA0110"],"gene_count":0,"genotype_count":0,"name":"obsolete peptide cross-linking via lanthionine or 3-methyl-lanthionine (obsolete GO:0018081)","synonyms":[{"name":"peptide cross-linking via the thioethers lanthionine or 3-methyl-lanthionine","type":"exact"},{"name":"peptide cross-linking via the thiolethers lanthionine or 3-methyl-lanthionine","type":"exact"}],"termid":"GO:0018081"}


id: GO:0010986
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of lipoprotein particle clearance. Lipoprotein particle clearance is the process in which a lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.","definition_xrefs":["GOC:tb","GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipoprotein particle clearance","termid":"GO:0010984"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"positively_regulates","term_name":"plasma lipoprotein particle clearance","termid":"GO:0034381"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of lipoprotein particle clearance","termid":"GO:0010986"}


id: PBO:0041269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C1q like 1 pseudogene 1","termid":"PBO:0041269"}


id: GO:0048504
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of animal organ formation at a consistent predetermined time point during development.","definition_xrefs":["GOC:bf","GOC:jid","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of animal organ formation","termid":"GO:0003156"},{"relation_name":"is_a","term_name":"regulation of development, heterochronic","termid":"GO:0040034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of timing of animal organ formation","synonyms":[{"name":"timing of organ biosynthesis","type":"related"},{"name":"timing of organ formation","type":"related"}],"termid":"GO:0048504"}


id: PBO:0085826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; FEAR network component that partially overlaps the function of SPO12 in promoting Cdc14p release from the nucleolus during early mitotic anaphase and mitotic exit; overexpression partially suppresses the meiotic defect of spo12; BNS1 has a paralog, SPO12, that arose from the whole genome duplication","termid":"PBO:0085826"}


id: FYPO:0001853
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription does not occur when the cell is subject to iron ion starvation. All genes, or a specific subset of genes, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished transcription during vegetative growth","termid":"FYPO:0001443"},{"relation_name":"is_a","term_name":"decreased transcription during iron starvation","termid":"FYPO:0001852"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0001985","FYPO:0001320","FYPO:0006551","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abolished transcription during iron starvation","synonyms":[{"name":"abolished transcription during iron depletion","type":"exact"},{"name":"abolished transcription during iron deprivation","type":"exact"},{"name":"abolished transcription during iron ion starvation","type":"exact"},{"name":"abolished transcription during iron starvation during mitotic cell cycle","type":"related"},{"name":"abolished transcription during iron starvation during vegetative growth","type":"exact"},{"name":"transcription abolished during iron starvation","type":"exact"}],"termid":"FYPO:0001853"}


id: PBO:0060047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4 pseudogene 35","termid":"PBO:0060047"}


id: FYPO:0000734
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the structure of the meiotic spindle is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal spindle","termid":"FYPO:0000120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000120"}],"interesting_parent_ids":["FYPO:0002399","FYPO:0000120","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000054"],"is_obsolete":false,"name":"abnormal meiotic spindle","termid":"FYPO:0000734"}


id: PBO:0045640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 52 (pseudogene)","termid":"PBO:0045640"}


id: SO:0001821
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An inframe non synonymous variant that inserts bases into in the coding sequence.","definition_xrefs":["EBI:gr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inframe_indel","termid":"SO:0001820"},{"relation_name":"is_a","term_name":"internal_feature_elongation","termid":"SO:0001908"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inframe_insertion","secondary_identifiers":["SO:0001651","http://snpeff.sourceforge.net/SnpEff_manual.html","http://vat.gersteinlab.org/formats.php","http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences"],"synonyms":[{"name":"ANNOVAR:nonframeshift insertion","type":"exact"},{"name":"Jannovar:inframe_insertion","type":"exact"},{"name":"VAT:insertionNFS","type":"exact"},{"name":"VEP:inframe_insertion","type":"exact"},{"name":"inframe codon gain","type":"related"},{"name":"inframe increase in CDS length","type":"exact"},{"name":"inframe insertion","type":"exact"},{"name":"inframe_codon_gain","type":"exact"},{"name":"snpEFF:CODON_INSERTION","type":"exact"}],"termid":"SO:0001821"}


id: GO:0033081
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of T cell differentiation in the thymus.","definition_xrefs":["GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T cell differentiation","termid":"GO:0045580"},{"relation_name":"regulates","term_name":"T cell differentiation in thymus","termid":"GO:0033077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of T cell differentiation in thymus","synonyms":[{"name":"regulation of T cell development in thymus","type":"related"},{"name":"regulation of thymic T cell differentiation","type":"exact"},{"name":"regulation of thymocyte cell differentiation","type":"exact"},{"name":"regulation of thymocyte differentiation","type":"exact"}],"termid":"GO:0033081"}


id: GO:0071351
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-18 stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to interleukin-18","termid":"GO:0070673"},{"relation_name":"is_a","term_name":"cellular response to cytokine stimulus","termid":"GO:0071345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to interleukin-18","synonyms":[{"name":"cellular response to IL-18","type":"exact"}],"termid":"GO:0071351"}


id: PBO:0073603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shroom family member 3","termid":"PBO:0073603"}


id: PBO:0027632
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9_acetylation_at_subtelomere","termid":"PBO:0027632"}


id: FYECO:0000038
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which magnesium ions were added to the assay buffer in excess compared to standard assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ ions","termid":"FYECO:0000030"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ Mg ions","synonyms":[{"name":"magnesium ions added","type":"exact"}],"termid":"FYECO:0000038"}


id: GO:2000131
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of tyramine signaling pathway.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of octopamine or tyramine signaling pathway","termid":"GO:2000125"},{"relation_name":"regulates","term_name":"tyramine signaling pathway","termid":"GO:0071928"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of tyramine signaling pathway","synonyms":[{"name":"regulation of tyramine signalling pathway","type":"exact"}],"termid":"GO:2000131"}


id: GO:0032485
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of Ral protein signal transduction.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of small GTPase mediated signal transduction","termid":"GO:0051056"},{"relation_name":"regulates","term_name":"Ral protein signal transduction","termid":"GO:0032484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of Ral protein signal transduction","termid":"GO:0032485"}


id: PBO:0085020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nicotinate phosphoribosyltransferase; acts in the salvage pathway of NAD+ biosynthesis; required for silencing at rDNA and telomeres and has a role in silencing at mating-type loci; localized to the nucleus","termid":"PBO:0085020"}


id: PBO:0045323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dedicator of cytokinesis 3","termid":"PBO:0045323"}


id: PBO:0076234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"surfeit 2","termid":"PBO:0076234"}


id: GO:0097354
data:
  {"annotated_genes":["SJAG_02583","SJAG_03810"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[61003,67110],"is_not":false,"summary":null,"term":"GO:0097354"}]},"cv_name":"biological_process","definition":"The covalent attachment of a prenyl group to a molecule; geranyl, farnesyl, or geranylgeranyl groups may be added.","definition_xrefs":["PMID:18029206","PMID:21351751","PMID:22642693","GOC:di","PMID:22660767","PMID:22123822"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular metabolic process","termid":"GO:0044237"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02583":null,"SJAG_03810":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"prenylation","references_by_uniquename":{"GO_REF:0000104":null},"termid":"GO:0097354","terms_by_termid":{"GO:0097354":null}}


id: SO:0002217
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence alteration which includes an insertion or a deletion. This describes a sequence length change when the direction of the change is unspecified or when such changes are pooled into one category.","definition_xrefs":["ZFIN:st"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_alteration","termid":"SO:0001059"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unspecified_indel","synonyms":[{"name":"insertion or deletion","type":"exact"},{"name":"unspecified indel","type":"exact"}],"termid":"SO:0002217"}


id: PBO:0070328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, Ro60-associated Y4","termid":"PBO:0070328"}


id: PBO:0031799
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_mitotic_G2/M_phase_transition","termid":"PBO:0031799"}


id: GO:0015631
data:
  {"annotated_genes":["SJAG_03540","SJAG_04074","SJAG_03073","SJAG_02270","SJAG_01546","SJAG_00851","SJAG_01613","SJAG_02656","SJAG_00930","SJAG_02336","SJAG_02040","SJAG_01760","SJAG_00773","SJAG_02795","SJAG_02624","SJAG_04841","SJAG_02814","SJAG_02848","SJAG_03835","SJAG_02045","SJAG_02384","SJAG_00723","SJAG_04745","SJAG_00042","SJAG_01297","SJAG_00332","SJAG_02609"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[66333,75724],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048487"},{"annotations":[58608,73074,74998,78628,72790,67505,60858,63412,75391,75743,59075,77648,63426,75679,65665,76052,68104,61740,75364],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008017"},{"annotations":[70749,70193],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051011"},{"annotations":[69546,64780,67637,78782],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051010"}]},"cv_name":"molecular_function","definition":"Binding to monomeric or multimeric forms of tubulin, including microtubules.","definition_xrefs":["GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeletal protein binding","termid":"GO:0008092"}],"gene_count":27,"genes_by_uniquename":{"SJAG_00042":null,"SJAG_00332":null,"SJAG_00723":null,"SJAG_00773":null,"SJAG_00851":null,"SJAG_00930":null,"SJAG_01297":null,"SJAG_01546":null,"SJAG_01613":null,"SJAG_01760":null,"SJAG_02040":null,"SJAG_02045":null,"SJAG_02270":null,"SJAG_02336":null,"SJAG_02384":null,"SJAG_02609":null,"SJAG_02624":null,"SJAG_02656":null,"SJAG_02795":null,"SJAG_02814":null,"SJAG_02848":null,"SJAG_03073":null,"SJAG_03540":null,"SJAG_03835":null,"SJAG_04074":null,"SJAG_04745":null,"SJAG_04841":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0008092"}],"interesting_parent_ids":["GO:0003674","GO:0008092","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"tubulin binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"termid":"GO:0015631","terms_by_termid":{"GO:0008017":null,"GO:0048487":null,"GO:0051010":null,"GO:0051011":null}}


id: PBO:0041614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cdk5 and Abl enzyme substrate 2","termid":"PBO:0041614"}


id: GO:1901963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell proliferation involved in outflow tract morphogenesis.","definition_xrefs":["GOC:dph","GOC:mtg_heart","PMID:21419760","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell proliferation involved in heart morphogenesis","termid":"GO:2000136"},{"relation_name":"regulates","term_name":"cell proliferation involved in outflow tract morphogenesis","termid":"GO:0061325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell proliferation involved in outflow tract morphogenesis","termid":"GO:1901963"}


id: PBO:0076880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 29","termid":"PBO:0076880"}


id: PBO:0058604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6736","termid":"PBO:0058604"}


id: PBO:0087682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the mRNA cleavage and polyadenlylation factor (CPF); required for pre-mRNA cleavage, polyadenylation and poly(A) site recognition, 43% similarity with the mammalian CPSF-100 protein.","termid":"PBO:0087682"}


id: MOD:00010
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to an L-alanine.","definition_xrefs":["DeltaMass:0","RESID:AA0001","PubMed:6692818","ChEBI:29948"],"direct_ancestors":[{"relation_name":"is_a","term_name":"residues isobaric at 71.037114 Da","termid":"MOD:00570"},{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue","termid":"MOD:01441"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-alanine residue","synonyms":[{"name":"(2S)-2-aminopropanoic acid","type":"exact"},{"name":"2-aminopropionic acid","type":"exact"},{"name":"2-azanylpropanoic acid","type":"exact"},{"name":"Ala","type":"exact"},{"name":"L-alanine","type":"exact"},{"name":"alpha-alanine","type":"exact"},{"name":"alpha-aminopropionic acid","type":"exact"}],"termid":"MOD:00010"}


id: GO:0103081
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3-(3'-methylthio)propylmalate = H+ + 2-oxo-6-methylthiohexanoate + carbon dioxide.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete methylthiopropylmalate dehydrogenase activity (obsolete GO:0103081)","termid":"GO:0103081"}


id: GO:0052508
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of symbiont salicylic acid-mediated signal transduction pathways during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway (obsolete GO:0052508)","synonyms":[{"name":"activation by organism of defense-related symbiont SA-mediated signal transduction pathway","type":"narrow"},{"name":"activation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway","type":"narrow"},{"name":"induction by organism of defense-related symbiont SA-mediated signal transduction pathway","type":"narrow"},{"name":"induction by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway","type":"narrow"},{"name":"positive regulation by organism of defense-related symbiont SA-mediated signal transduction pathway","type":"narrow"},{"name":"positive regulation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway","type":"exact"},{"name":"upregulation by organism of defense-related symbiont SA-mediated signal transduction pathway","type":"narrow"},{"name":"upregulation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway","type":"narrow"}],"termid":"GO:0052508"}


id: FYPO_EXT:1000000
data:
  {"annotation_feature_type":"gene","cv_name":"fypo_extensions","definition":"root of FYPO extension ontology","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FYPO extension","termid":"FYPO_EXT:1000000"}


id: PBO:0088455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIS12/MIND complex subunit Nnf1","termid":"PBO:0088455"}


id: GO:0021891
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of an interneuron residing in the olfactory bulb, from its initial commitment, to the fully functional differentiated cell.","definition_xrefs":["GOC:jid","PMID:12626695","GOC:cls","GOC:dgh","GOC:dph","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron development","termid":"GO:0048666"},{"relation_name":"part_of","term_name":"olfactory bulb interneuron differentiation","termid":"GO:0021889"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"olfactory bulb interneuron development","termid":"GO:0021891"}


id: GO:0015890
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of nicotinamide mononucleotide into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Nicotinamide mononucleotide is a ribonucleotide in which the nitrogenous base, nicotinamide, is in beta-n-glycosidic linkage with the c-1 position of D-ribose. It is a constituent of NAD and NADP.","definition_xrefs":["ISBN:0721662544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide transport","termid":"GO:0006862"},{"relation_name":"is_a","term_name":"carbohydrate derivative transport","termid":"GO:1901264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"nicotinamide mononucleotide transport","synonyms":[{"name":"nicotinamide ribonucleotide transport","type":"exact"}],"termid":"GO:0015890"}


id: PBO:0087264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Serine/threonine-rich protein involved in PKC1 signaling pathway; protein kinase C (PKC1) signaling pathway controls cell integrity; overproduction suppresses pkc1 mutations","termid":"PBO:0087264"}


id: GO:0035510
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of an alkyl group from one or more nucleotides within an DNA molecule.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA modification","termid":"GO:0006304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"DNA dealkylation","termid":"GO:0035510"}


id: GO:0006399
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  {"annotated_genes":["SJAG_00991","SJAG_04984","SJAG_02716","SJAG_04725","SJAG_03256","SJAG_05346","SJAG_02605","SJAG_03591","SJAG_04637","SJAG_03970","SJAG_00522","SJAG_00543","SJAG_00626","SJAG_03400","SJAG_02029","SJAG_03899"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92131],"is_not":false,"summary":null,"term":"GO:1902475"},{"annotations":[96336,94324],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904983"},{"annotations":[96458],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097638"},{"annotations":[93465],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990818"},{"annotations":[99932],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090518"},{"annotations":[94918,62681],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903826"},{"annotations":[92660],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070778"},{"annotations":[94325],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110141"},{"annotations":[99934],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090515"},{"annotations":[92661],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015813"},{"annotations":[93466],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0089708"},{"annotations":[99935],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090513"},{"annotations":[96459],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097639"},{"annotations":[98898,99936],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901482"},{"annotations":[93467],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0089707"},{"annotations":[99937,106101],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090517"},{"annotations":[99938],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090516"},{"annotations":[99939],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090514"},{"annotations":[94326,103987],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990575"},{"annotations":[84230],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1905533"},{"annotations":[94974,87842,89425,106617],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1905589"},{"annotations":[87843,89426,94975],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1905534"},{"annotations":[89427],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905626"}]},"cv_name":"biological_process","definition":"The directed movement of L-alpha-amino acid across a membrane by means of some agent such as a transporter or a pore.","definition_xrefs":["GOC:kmv","GOC:TermGenie","PMID:14668347"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane transport","termid":"GO:0003333"},{"relation_name":"is_a","term_name":"L-amino acid transport","termid":"GO:0015807"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00522":null,"SJAG_00543":null,"SJAG_00626":null,"SJAG_00991":null,"SJAG_02029":null,"SJAG_02605":null,"SJAG_02716":null,"SJAG_03256":null,"SJAG_03400":null,"SJAG_03591":null,"SJAG_03899":null,"SJAG_03970":null,"SJAG_04637":null,"SJAG_04725":null,"SJAG_04984":null,"SJAG_05346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0051179","GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"L-alpha-amino acid transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"termid":"GO:1902475","terms_by_termid":{"GO:0015813":null,"GO:0070778":null,"GO:0089707":null,"GO:0089708":null,"GO:0090513":null,"GO:0090514":null,"GO:0090515":null,"GO:0090516":null,"GO:0090517":null,"GO:0090518":null,"GO:0097638":null,"GO:0097639":null,"GO:0110141":null,"GO:1901482":null,"GO:1902475":null,"GO:1903826":null,"GO:1904983":null,"GO:1905533":null,"GO:1905534":null,"GO:1905589":null,"GO:1905626":null,"GO:1990575":null,"GO:1990818":null}}


id: PBO:0083819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential subunit of Sec63 complex; with Sec61 complex, Kar2p/BiP and Lhs1p forms a channel competent for SRP-dependent and post-translational SRP-independent protein targeting and import into the ER; other members are Sec62p, Sec66p, and Sec72p","termid":"PBO:0083819"}


id: FYPO:0004893
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of 1,3-beta-D-glucan synthase activity is normal (i.e. indistinguishable from wild type) during the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah","PMID:11069657"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal 1,3-beta-D-glucan synthase activity","termid":"FYPO:0002157"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000257"],"is_obsolete":false,"name":"normal 1,3-beta-D-glucan synthase activity during vegetative growth","synonyms":[{"name":"normal 1,3-beta-D-glucan synthase activity during vegetative growth during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004893"}


id: GO:0071371
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gonadotropin stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to hormone stimulus","termid":"GO:0032870"},{"relation_name":"is_a","term_name":"response to gonadotropin","termid":"GO:0034698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to gonadotropin stimulus","synonyms":[{"name":"cellular response to gonadotrophin stimulus","type":"exact"}],"termid":"GO:0071371"}


id: GO:0005007
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a fibroblast growth factor receptor ligand and transmitting the signal across the plasma membrane to initiate a change in cell activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane receptor protein tyrosine kinase activity","termid":"GO:0004714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0016301","GO:0003824","GO:0004672","GO:0003674","GO:0140096","GO:0038023","GO:0016740"],"is_obsolete":false,"name":"fibroblast growth factor receptor activity","synonyms":[{"name":"FGF receptor activity","type":"exact"},{"name":"FGF-activated receptor activity","type":"exact"},{"name":"FGFR","type":"exact"},{"name":"fibroblast growth factor-activated receptor activity","type":"exact"}],"termid":"GO:0005007"}


id: GO:0099124
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of dopamine from an axon.","definition_xrefs":["GOC:PARL","GOC:bf","PMID:21576241"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dopamine secretion","termid":"GO:0014046"},{"relation_name":"is_a","term_name":"establishment of localization in cell","termid":"GO:0051649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"axonal dopamine secretion","synonyms":[{"name":"axonal DA release","type":"exact"},{"name":"axonal dopamine release","type":"exact"}],"termid":"GO:0099124"}


id: PBO:0088577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chitinase Cts2","termid":"PBO:0088577"}


id: GO:0000902
data:
  {"annotated_genes":["SJAG_04522","SJAG_04666","SJAG_01017","SJAG_02989","SJAG_00661","SJAG_00216","SJAG_00610","SJAG_01799","SJAG_02536","SJAG_04461","SJAG_03705","SJAG_00596","SJAG_03486","SJAG_02864","SJAG_04322","SJAG_02169","SJAG_02700","SJAG_03581","SJAG_01993","SJAG_00845","SJAG_02838","SJAG_02392","SJAG_04724","SJAG_00333","SJAG_01456","SJAG_03637","SJAG_01894","SJAG_00028","SJAG_00236","SJAG_04509","SJAG_00244","SJAG_01943","SJAG_02022","SJAG_00514"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90683,85991,91949],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0051519"},{"annotations":[84032,90123],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042815"},{"annotations":[106839,112551,113948,99588,84196,95834,102929],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0051523"},{"annotations":[100617],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0061246"},{"annotations":[94392,88609,84399,94994,95075,110391],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1904600"},{"annotations":[86841],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0051517"},{"annotations":[112657,103696],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:2000784"},{"annotations":[89844,96272,101434,99801],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:2000247"},{"annotations":[111114],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0051516"},{"annotations":[115298,115297],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0008360"},{"annotations":[100621,90689,91769,87244,114824,101437,96275,109131],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:2000100"},{"annotations":[98943,84041,88524],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:2000769"}]},"cv_name":"biological_process","definition":"The developmental process in which the size or shape of a cell is generated and organized.","definition_xrefs":["GOC:go_curators","GOC:clt","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"}],"gene_count":34,"genes_by_uniquename":{"SJAG_00028":null,"SJAG_00216":null,"SJAG_00236":null,"SJAG_00244":null,"SJAG_00333":null,"SJAG_00514":null,"SJAG_00596":null,"SJAG_00610":null,"SJAG_00661":null,"SJAG_00845":null,"SJAG_01017":null,"SJAG_01456":null,"SJAG_01799":null,"SJAG_01894":null,"SJAG_01943":null,"SJAG_01993":null,"SJAG_02022":null,"SJAG_02169":null,"SJAG_02392":null,"SJAG_02536":null,"SJAG_02700":null,"SJAG_02838":null,"SJAG_02864":null,"SJAG_02989":null,"SJAG_03486":null,"SJAG_03581":null,"SJAG_03637":null,"SJAG_03705":null,"SJAG_04322":null,"SJAG_04461":null,"SJAG_04509":null,"SJAG_04522":null,"SJAG_04666":null,"SJAG_04724":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell morphogenesis","references_by_uniquename":{"GO_REF:0000107":null,"PMID:30664646":null},"secondary_identifiers":["GO:0007148","GO:0045790","GO:0045791"],"synonyms":[{"name":"cellular morphogenesis","type":"exact"}],"termid":"GO:0000902","terms_by_termid":{"GO:0008360":null,"GO:0042815":null,"GO:0051516":null,"GO:0051517":null,"GO:0051519":null,"GO:0051523":null,"GO:0061246":null,"GO:1904600":null,"GO:2000100":null,"GO:2000247":null,"GO:2000769":null,"GO:2000784":null}}


id: PBO:0038499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily C member 8","termid":"PBO:0038499"}


id: FYECO:0000224
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which histidine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ his","synonyms":[{"name":"histidine added","type":"exact"}],"termid":"FYECO:0000224"}


id: RO:0008503
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material","direct_ancestors":[{"relation_name":"is_a","term_name":"parasite_of","termid":"RO:0002444"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kleptoparasite_of","termid":"RO:0008503"}


id: PBO:0080208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vestigial like family member 2","termid":"PBO:0080208"}


id: GO:0035036
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The initial contact step made between the sperm plasma membrane and outer layer of the egg during fertilization.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell recognition","termid":"GO:0009988"},{"relation_name":"part_of","term_name":"single fertilization","termid":"GO:0007338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sperm-egg recognition","termid":"GO:0035036"}


id: PBO:0042128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cervical cancer associated DHX9 suppressive transcript","termid":"PBO:0042128"}


id: GO:0005669
data:
  {"annotated_genes":["SJAG_03900","SJAG_03285","SJAG_04977","SJAG_00584","SJAG_02458","SJAG_00741","SJAG_04274","SJAG_04654","SJAG_00421","SJAG_02541","SJAG_04917","SJAG_01808","SJAG_00872","SJAG_03107","SJAG_01475","SJAG_00735"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[83526,84482,84741,85404,89609,90249,91682,92134,92901,96317,99715,102976,110298,110862,111444,113612],"is_not":false,"summary":null,"term":"GO:0005669"}]},"cv_name":"cellular_component","definition":"A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters.","definition_xrefs":["GOC:mah","GOC:krc","ISBN:0879695501","ISBN:0471953393"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription regulator complex","termid":"GO:0090575"},{"relation_name":"part_of","term_name":"RNA polymerase II, holoenzyme","termid":"GO:0016591"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00421":null,"SJAG_00584":null,"SJAG_00735":null,"SJAG_00741":null,"SJAG_00872":null,"SJAG_01475":null,"SJAG_01808":null,"SJAG_02458":null,"SJAG_02541":null,"SJAG_03107":null,"SJAG_03285":null,"SJAG_03900":null,"SJAG_04274":null,"SJAG_04654":null,"SJAG_04917":null,"SJAG_04977":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005654","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"transcription factor TFIID complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0005669","terms_by_termid":{"GO:0005669":null}}


id: PR:Q9URT4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ams2 gene.","definition_xrefs":["UniProtKB:Q9URT4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-A multicopy suppressor protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC290.04","synonyms":[{"name":"Spom972h-ams2","type":"exact"}],"termid":"PR:Q9URT4"}


id: GO:0003427
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell that modulates the rate, frequency, or extent of the polarization of cytoskeletal structures in a growth plate cartilage chondrocyte. This process results in the oriented division of the cell.","definition_xrefs":["GOC:tb","GOC:ascb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of establishment or maintenance of cell polarity","termid":"GO:0032878"},{"relation_name":"is_a","term_name":"regulation of cytoskeleton organization","termid":"GO:0051493"},{"relation_name":"is_a","term_name":"Wnt signaling pathway, planar cell polarity pathway","termid":"GO:0060071"},{"relation_name":"regulates","term_name":"cytoskeleton polarization involved in growth plate cartilage chondrocyte division","termid":"GO:0003426"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007163"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007010","GO:0023052","GO:0008150","GO:0007163"],"is_obsolete":false,"name":"regulation of cytoskeleton polarization involved in growth plate cartilage chondrocyte division","synonyms":[{"name":"regulation of cytoskeleton polarization involved in growth plate cartilage chondrocyte division by planar cell polarity pathway","type":"exact"}],"termid":"GO:0003427"}


id: PBO:0031679
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_mitotic_cell_cycle_arrest_in_response_to_pheromone","termid":"PBO:0031679"}


id: PBO:0057440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 557","termid":"PBO:0057440"}


id: PBO:0108762
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ageing-Associated LncRNA","termid":"PBO:0108762"}


id: GO:0016251
data:
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id: PBO:0057068
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id: GO:0061198
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id: PBO:0053093
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id: GO:0031713
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id: FYPO:0000513
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id: GO:1901135
data:
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id: PBO:0031582
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id: PBO:0005404
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id: PBO:0042312
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id: GO:0098625
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id: PBO:0031113
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id: PBO:0075576
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id: GO:0047700
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id: PBO:0003520
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id: GO:0047027
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id: GO:0003693
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id: PBO:0003145
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id: GO:0042702
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id: PBO:0043380
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id: GO:1904714
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id: GO:1905346
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id: FYPO:0007335
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id: GO:0032560
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id: PBO:0088968
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id: PBO:0065247
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id: PBO:0049056
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id: PBO:0071620
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id: PBO:0054792
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id: GO:0097127
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex consisting of cyclin B3 and cyclin-dependent kinase 2 (CDK2). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner.","definition_xrefs":["PMID:15935619","GOC:so"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent protein kinase holoenzyme complex","termid":"GO:0000307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"cyclin B3-CDK2 complex","termid":"GO:0097127"}


id: GO:1903530
data:
  {"annotated_genes":["SJAG_02366","SJAG_04509","SJAG_03763","SJAG_00661"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96273],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045921"},{"annotations":[89951,84042,94505],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0017157"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of secretion by cell.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:12130530","GOC:pm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular process","termid":"GO:0050794"},{"relation_name":"is_a","term_name":"regulation of secretion","termid":"GO:0051046"},{"relation_name":"regulates","term_name":"secretion by cell","termid":"GO:0032940"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00661":null,"SJAG_02366":null,"SJAG_03763":null,"SJAG_04509":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of secretion by cell","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of cellular secretion","type":"exact"}],"termid":"GO:1903530","terms_by_termid":{"GO:0017157":null,"GO:0045921":null}}


id: GO:0097612
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cell surface furrow that occurs on the ventral side of a dinoflagellate cell. It partially houses the longitudinal flagellum. The sulcus intersects with the cingulum on the ventral side of a dinoflagellate cell.","definition_xrefs":["Wikipedia:Dinoflagellate#Morphology","GOC:at","PMID:20561119"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface furrow","termid":"GO:0097610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0009986"}],"interesting_parent_ids":["GO:0005575","GO:0009986"],"is_obsolete":false,"name":"dinoflagellate sulcus","synonyms":[{"name":"longitudinal furrow","type":"related"},{"name":"longitudinal groove","type":"related"},{"name":"sulcus","type":"broad"}],"termid":"GO:0097612"}


id: PATO:0001854
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial pattern inhering in a bearer by virtue of the bearer's being situated at right angles to the horizon.","definition_xrefs":["thefreedictionary.com:thefreedictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spatial pattern","termid":"PATO:0000060"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vertical","termid":"PATO:0001854"}


id: FYPO:0007270
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nuclear chromatin organization is abnormal, such regions containing transposons (Tf2 elements) are tethered to the centromere to a lower extent than normal.","definition_xrefs":["PomBase:mah","PMID:23084836"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin organization during vegetative growth","termid":"FYPO:0001352"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000641","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased Tf body tethering to centromere","synonyms":[{"name":"decreased Tf body tethering to centromere during mitotic cell cycle","type":"related"},{"name":"decreased Tf body tethering to centromere during vegetative growth","type":"exact"},{"name":"decreased Tf2 body tethering to centromere","type":"exact"},{"name":"decreased centromere tethering of Tf2 bodies","type":"exact"},{"name":"reduced Tf body tethering to centromere","type":"exact"}],"termid":"FYPO:0007270"}


id: GO:0039586
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a virus effects a change in host protein phosphatase-1 (PP1) activity, a serine/threonine phosphatase. Different viruses modulate host PP1 activity to remove phosphates from various cellular substrates and downregulate the host's antiviral response.","definition_xrefs":["UniProtKB-KW:KW-1126","VZ:803"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by virus of host PP1 activity (obsolete GO:0039586)","synonyms":[{"name":"modulation of host PP1 activity by virus","type":"exact"},{"name":"regulation by virus of host PP1 activity","type":"exact"}],"termid":"GO:0039586"}


id: PBO:0066639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal modification protein rimK like family member B","termid":"PBO:0066639"}


id: PBO:0056303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule associated protein 2","termid":"PBO:0056303"}


id: PBO:0076532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 46","termid":"PBO:0076532"}


id: PBO:0056152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule actin crosslinking factor 1","termid":"PBO:0056152"}


id: PBO:0084775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial outer membrane protein of unknown function; major constituent of the outer membrane, extending into the intermembrane space; interacts with porin (Por1p) and with Om14p; imported via the presequence pathway involving the TOM and TIM23 complexes, then assembled in the outer membrane by Mim1p; protein abundance increases in response to DNA replication stress","termid":"PBO:0084775"}


id: GO:0140963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A chemical homeostatic process involved in the maintenance of a steady state level of auxin within extracellular body fluids, such as the xylem or phloem of a multicellular organism. This is distinct from maintenance of cellular homeostasis, which occurs within a cell.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete multicellular organismal-level auxin homeostasis (obsolete GO:0140963)","synonyms":[{"name":"auxin homeostasis","type":"broad"},{"name":"multicellular organismal auxin homeostasis","type":"exact"}],"termid":"GO:0140963"}


id: PBO:0086075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function with 8 putative transmembrane segments; ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression","termid":"PBO:0086075"}


id: PR:Q10155
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- trz1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10155"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease Z 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1D4.10","synonyms":[{"name":"RNase Z 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-trz1","type":"exact"},{"name":"tRNA 3 endonuclease 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tRNase Z 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10155"}


id: PBO:0040616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 antagonist/killer 1 pseudogene 1","termid":"PBO:0040616"}


id: PBO:0027382
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_exit_from_mitosis","termid":"PBO:0027382"}


id: GO:0072545
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to L-tyrosine, 2-amino-3-(4-hydroxyphenyl)propanoic acid.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid binding","termid":"GO:0016597"},{"relation_name":"is_a","term_name":"carboxylic acid binding","termid":"GO:0031406"},{"relation_name":"is_a","term_name":"cation binding","termid":"GO:0043169"},{"relation_name":"is_a","term_name":"organic cyclic compound binding","termid":"GO:0097159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"L-tyrosine binding","synonyms":[{"name":"L-Tyr binding","type":"exact"},{"name":"tyrosine binding","type":"broad"}],"termid":"GO:0072545"}


id: GO:1902760
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of Mo(VI)-molybdopterin cytosine dinucleotide.","definition_xrefs":["GO_REF:0000068","GOC:dph","GOC:TermGenie","PMID:23201473"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Mo-molybdopterin cofactor biosynthetic process","termid":"GO:0006777"},{"relation_name":"is_a","term_name":"nucleotide biosynthetic process","termid":"GO:0009165"},{"relation_name":"is_a","term_name":"Mo(VI)-molybdopterin cytosine dinucleotide metabolic process","termid":"GO:1902759"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"Mo(VI)-molybdopterin cytosine dinucleotide biosynthetic process","secondary_identifiers":["MetaCyc:PWY-6476","GO:0061601"],"synonyms":[{"name":"Mo(VI)-molybdopterin cytosine dinucleotide anabolism","type":"exact"},{"name":"Mo(VI)-molybdopterin cytosine dinucleotide biosynthesis","type":"exact"},{"name":"Mo(VI)-molybdopterin cytosine dinucleotide formation","type":"exact"},{"name":"Mo(VI)-molybdopterin cytosine dinucleotide synthesis","type":"exact"},{"name":"Mo-molybdopterin-cytosine-dinucleotide cofactor biosynthetic process","type":"exact"}],"termid":"GO:1902760"}


id: PBO:0111068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fbp1 upstream regulatory lncRNA c","termid":"PBO:0111068"}


id: GO:0052822
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: DNA containing 3-methylguanine + H2O = DNA with abasic site + 3-methylguanine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the damaged DNA 3-methylguanine and the deoxyribose sugar to remove the 3-methylguanine, leaving an abasic site.","definition_xrefs":["PMID:10872450","GOC:elh","PMID:9224623","EC:3.2.2.21"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-3-methylbase glycosylase activity","termid":"GO:0043733"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0140097","GO:0016798","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"DNA-3-methylguanine glycosylase activity","synonyms":[{"name":"3-methylguanine DNA glycosylase I","type":"related"},{"name":"DNA glycosidase I activity","type":"related"},{"name":"alkylated-DNA glycohydrolase (releasing methyladenine and methylguanine)","type":"broad"},{"name":"deoxyribonucleate 3-methylguanine glycosidase I","type":"related"}],"termid":"GO:0052822"}


id: PBO:0075213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntrophin gamma 1","termid":"PBO:0075213"}


id: PBO:0060334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin VA","termid":"PBO:0060334"}


id: PBO:0048395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth arrest specific 2 like 1 pseudogene 2","termid":"PBO:0048395"}


id: GO:0045952
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of juvenile hormone.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of juvenile hormone metabolic process","termid":"GO:0007556"},{"relation_name":"is_a","term_name":"regulation of cellular catabolic process","termid":"GO:0031329"},{"relation_name":"is_a","term_name":"regulation of lipid catabolic process","termid":"GO:0050994"},{"relation_name":"regulates","term_name":"juvenile hormone catabolic process","termid":"GO:0006719"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748","GO:0044248","GO:0006629"],"is_obsolete":false,"name":"regulation of juvenile hormone catabolic process","synonyms":[{"name":"regulation of juvenile hormone breakdown","type":"exact"},{"name":"regulation of juvenile hormone catabolism","type":"exact"},{"name":"regulation of juvenile hormone degradation","type":"exact"}],"termid":"GO:0045952"}


id: PBO:0003419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP-ribose diphosphatase, NudF subfamily (predicted)","termid":"PBO:0003419"}


id: PBO:0004666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sds3-like family protein Dep1","termid":"PBO:0004666"}


id: PBO:0072541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 71","termid":"PBO:0072541"}


id: PBO:0087533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of Nup84p subcomplex of nuclear pore complex (NPC); contributes to nucleocytoplasmic transport, NPC biogenesis; is involved in establishment of a normal nucleocytoplasmic concentration gradient of GTPase Gsp1p; also plays roles in several processes that may require localization of genes or chromosomes at nuclear periphery, including double-strand break repair, transcription and chromatin silencing; relocalizes to cytosol in response to hypoxia; homolog of human NUP133","termid":"PBO:0087533"}


id: PBO:0088107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Uroporphyrinogen decarboxylase; catalyzes the fifth step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus; a hem12 mutant has phenotypes similar to patients with porphyria cutanea tarda","termid":"PBO:0088107"}


id: PBO:0052852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 4-8","termid":"PBO:0052852"}


id: PR:O14022
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cta5 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14022"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cation-transporting ATPase 5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29A4.19c","synonyms":[{"name":"Spom972h-cta5","type":"exact"}],"termid":"PR:O14022"}


id: PBO:0030722
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_cellular_phosphatidylinositol-4-phosphate_level","termid":"PBO:0030722"}


id: PR:O14177
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A charged multivesicular body protein 2a that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10476:SF4","PRO:DNx","OMA:SCHPO01120"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT-III complex subunit did4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4F8.01","secondary_identifiers":["UniProtKB:O14177"],"synonyms":[{"name":"Spom972h-CHMP2A","type":"exact"},{"name":"vacuolar protein-sorting-associated protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14177"}


id: GO:0039567
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host STAT1 (signal transducer and activator of transcription-1) activity by retaining STAT1 in the cytoplasm, so STAT1 is unable to translocate to the nucleus to activate transcription of its target genes.","definition_xrefs":["PMID:14557668","PMID:16254375","PMID:17287281"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host STAT1 activity by negative regulation of STAT protein import into nucleus (obsolete GO:0039567)","synonyms":[{"name":"cytoplasmic sequestration of STAT1","type":"broad"},{"name":"suppression by virus of host STAT1 activity by cytoplasmic sequestering of STAT1","type":"exact"}],"termid":"GO:0039567"}


id: PBO:0081358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 184","termid":"PBO:0081358"}


id: PBO:0078891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (anticodon CTG) 3-2","termid":"PBO:0078891"}


id: PBO:0000129
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence error in genomic data","termid":"PBO:0000129"}


id: GO:0014824
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the artery. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The artery is a vessel carrying blood away from the heart.","definition_xrefs":["MSH:D001158","MA:0000708","GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tonic smooth muscle contraction","termid":"GO:0014820"},{"relation_name":"is_a","term_name":"vascular associated smooth muscle contraction","termid":"GO:0014829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"artery smooth muscle contraction","termid":"GO:0014824"}


id: PBO:0049821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HDAC11 antisense RNA 1","termid":"PBO:0049821"}


id: GO:0002306
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a precursor cell type acquires the specialized features of a CD4-positive, gamma-delta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gamma-delta intraepithelial T cell differentiation","termid":"GO:0002304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CD4-positive gamma-delta intraepithelial T cell differentiation","synonyms":[{"name":"CD4-positive, gamma-delta intraepithelial T cell development","type":"related"},{"name":"CD4-positive, gamma-delta intraepithelial T lymphocyte differentiation","type":"exact"},{"name":"CD4-positive, gamma-delta intraepithelial T-cell differentiation","type":"exact"},{"name":"CD4-positive, gamma-delta intraepithelial T-lymphocyte differentiation","type":"exact"}],"termid":"GO:0002306"}


id: PBO:0064767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase H pseudogene 1","termid":"PBO:0064767"}


id: PBO:0064658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A","termid":"PBO:0064658"}


id: PR:O14262
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A haloacid dehalogenase-like hydrolase domain-containing protein 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01103"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized hydrolase C7D4.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC7D4.05","secondary_identifiers":["UniProtKB:O14262"],"synonyms":[{"name":"Spom972h-HDHD3","type":"exact"}],"termid":"PR:O14262"}


id: PBO:0072292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S24 pseudogene 10","termid":"PBO:0072292"}


id: PBO:0042834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CFAP20 domain containing","termid":"PBO:0042834"}


id: GO:0005074
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inhibitory SMAD protein (obsolete GO:0005074)","synonyms":[{"name":"inhibitory SMAD protein","type":"exact"}],"termid":"GO:0005074"}


id: SO:0000946
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region specifically recognised by a recombinase, which inserts or removes another region marked by a distinct cognate integration/excision site.","definition_xrefs":["SO:as"],"direct_ancestors":[{"relation_name":"is_a","term_name":"site_specific_recombination_target_region","termid":"SO:0000342"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integration_excision_site","synonyms":[{"name":"attachment site","type":"related"},{"name":"integration excision site","type":"exact"}],"termid":"SO:0000946"}


id: PBO:0046684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation termination factor 1 pseudogene 2","termid":"PBO:0046684"}


id: PBO:0059050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myeloid cell nuclear differentiation antigen","termid":"PBO:0059050"}


id: PBO:0090154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar protein Nop52 family Rrp1","termid":"PBO:0090154"}


id: GO:1990281
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that is capable of efflux transmembrane transporter activity.","definition_xrefs":["PMID:21556065","PMID:9417051","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter complex","termid":"GO:1902495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"efflux pump complex","synonyms":[{"name":"efflux pump","type":"exact"},{"name":"efflux transmembrane transporter complex","type":"exact"}],"termid":"GO:1990281"}


id: PBO:0012308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial transcriptional repressor protein BolA domain (predicted)","termid":"PBO:0012308"}


id: GO:0005763
data:
  {"annotated_genes":["SJAG_04173","SJAG_04494","SJAG_00513","SJAG_04378","SJAG_02643","SJAG_00782","SJAG_00944","SJAG_02452","SJAG_02324","SJAG_03053","SJAG_03584","SJAG_05320","SJAG_04281","SJAG_01767","SJAG_02359","SJAG_04753","SJAG_00148","SJAG_00860","SJAG_02067","SJAG_00060","SJAG_04164","SJAG_01468","SJAG_04918","SJAG_02201","SJAG_04788","SJAG_02777","SJAG_01734","SJAG_00628","SJAG_00889","SJAG_01520","SJAG_03065","SJAG_00105"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[86004,86056,88180,89754,90296,90582,90595,91450,92028,92733,94090,94091,94317,98409,99172,99458,100032,100099,102105,102465,104021,104164,104420,104664,105435,106211,106456,106745,108436,111648,112080,114116],"is_not":false,"summary":null,"term":"GO:0005763"}]},"cv_name":"cellular_component","definition":"The smaller of the two subunits of a mitochondrial ribosome.","definition_xrefs":["GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organellar small ribosomal subunit","termid":"GO:0000314"},{"relation_name":"is_a","term_name":"mitochondrial protein-containing complex","termid":"GO:0098798"},{"relation_name":"part_of","term_name":"mitochondrial ribosome","termid":"GO:0005761"}],"gene_count":32,"genes_by_uniquename":{"SJAG_00060":null,"SJAG_00105":null,"SJAG_00148":null,"SJAG_00513":null,"SJAG_00628":null,"SJAG_00782":null,"SJAG_00860":null,"SJAG_00889":null,"SJAG_00944":null,"SJAG_01468":null,"SJAG_01520":null,"SJAG_01734":null,"SJAG_01767":null,"SJAG_02067":null,"SJAG_02201":null,"SJAG_02324":null,"SJAG_02359":null,"SJAG_02452":null,"SJAG_02643":null,"SJAG_02777":null,"SJAG_03053":null,"SJAG_03065":null,"SJAG_03584":null,"SJAG_04164":null,"SJAG_04173":null,"SJAG_04281":null,"SJAG_04378":null,"SJAG_04494":null,"SJAG_04753":null,"SJAG_04788":null,"SJAG_04918":null,"SJAG_05320":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005739"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005739","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"mitochondrial small ribosomal subunit","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"28S ribosomal subunit, mitochondrial","type":"narrow"},{"name":"mitochondrial ribosomal SSU complex","type":"exact"},{"name":"mitochondrial ribosomal small subunit complex","type":"exact"}],"termid":"GO:0005763","terms_by_termid":{"GO:0005763":null}}


id: PBO:0002746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMN family protein Yip11","termid":"PBO:0002746"}


id: PBO:0065589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prothymosin alpha pseudogene 5","termid":"PBO:0065589"}


id: GO:0003316
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The specification and formation of the apicobasal polarity of an myocardial progenitor cell that contributes to the formation of the heart rudiment.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of epithelial cell apical/basal polarity","termid":"GO:0045198"},{"relation_name":"part_of","term_name":"heart rudiment formation","termid":"GO:0003315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007163"}],"interesting_parent_ids":["GO:0008150","GO:0007163"],"is_obsolete":false,"name":"establishment of myocardial progenitor cell apical/basal polarity","synonyms":[{"name":"myocardial progenitor epithelial polarization","type":"exact"}],"termid":"GO:0003316"}


id: PBO:0059716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO2 pseudogene 24","termid":"PBO:0059716"}


id: SO:0001660
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An element that only exists within the promoter region of a eukaryotic gene.","definition_xrefs":["GREEKC:cl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"core_promoter_element","termid":"SO:0002309"},{"relation_name":"part_of","term_name":"eukaryotic_promoter","termid":"SO:0002221"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"core_eukaryotic_promoter_element","synonyms":[{"name":"core eukaryotic promoter element","type":"exact"},{"name":"general transcription factor binding site","type":"related"}],"termid":"SO:0001660"}


id: PBO:0050252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 30","termid":"PBO:0050252"}


id: PBO:0076623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin folding cofactor E","termid":"PBO:0076623"}


id: PBO:0057212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 378b","termid":"PBO:0057212"}


id: MOD:00894
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Natural or modified resiues with a mass of 128.058578 Da.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"residues isobaric at a resolution below 0.000001 Da","termid":"MOD:00569"},{"relation_name":"is_a","term_name":"residues isobaric at 128.0-128.1","termid":"MOD:00893"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"residues isobaric at 128.058578 Da","termid":"MOD:00894"}


id: GO:0030922
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The oxidation of the C alpha-C beta bond of peptidyl-tyrosine to form peptidyl-(E)-2,3-didehydrotyrosine coupled with cyclization of neighboring residues.","definition_xrefs":["RESID:AA0365","PMID:12623015"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-tyrosine dehydrogenation","termid":"GO:0018251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-tyrosine dehydrogenation to form (E)-2,3-didehydrotyrosine","termid":"GO:0030922"}


id: PBO:0073855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 9 member A4","termid":"PBO:0073855"}


id: PBO:0081715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 641","termid":"PBO:0081715"}


id: FYPO:0002437
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form actin cables that are thicker than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cable morphology","termid":"FYPO:0002031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0004803","FYPO:0001985"],"is_obsolete":false,"name":"thick actin cables","synonyms":[{"name":"increased actin cable thickness","type":"exact"},{"name":"thick actin cables during mitotic cell cycle","type":"related"},{"name":"thick actin cables during vegetative growth","type":"exact"},{"name":"thick formin-nucleated actin cables","type":"exact"}],"termid":"FYPO:0002437"}


id: PBO:0035857
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K4_dimethylation_during_vegetative_growth","termid":"PBO:0035857"}


id: PBO:0074741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 101A","termid":"PBO:0074741"}


id: GO:0097295
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of morphine, 17-methyl-7,8-didehydro-4,5alpha-epoxymorphinan-3,6alpha-diol. Morphine is a highly potent opiate analgesic psychoactive drug obtained form the opium poppy, Papaver somniferum.","definition_xrefs":["PMID:19567876","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoquinoline alkaloid biosynthetic process","termid":"GO:0033075"},{"relation_name":"is_a","term_name":"morphine metabolic process","termid":"GO:0071272"},{"relation_name":"is_a","term_name":"organic heteropentacyclic compound biosynthetic process","termid":"GO:1901378"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"morphine biosynthetic process","synonyms":[{"name":"morphine anabolism","type":"exact"},{"name":"morphine biosynthesis","type":"exact"},{"name":"morphine formation","type":"exact"},{"name":"morphine synthesis","type":"exact"}],"termid":"GO:0097295"}


id: GO:0044574
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of the starch utilization system complex, a complex of cell envelope-associated proteins that degrades glycan.","definition_xrefs":["PMID:21219452","PMID:19553672","GOC:mengo_curators","GOC:tt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"starch utilization system complex assembly","synonyms":[{"name":"SUS complex assembly","type":"exact"},{"name":"assembly of starch utilization system complex","type":"exact"}],"termid":"GO:0044574"}


id: PBO:0062216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily AM member 1 pseudogene","termid":"PBO:0062216"}


id: SO:0001202
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A ambisense_RNA_virus is a ss_RNA_viral_sequence that is the sequence of a single stranded RNA virus with both messenger and anti messenger polarity.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ss_RNA_viral_sequence","termid":"SO:0001199"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ambisense_ssRNA_viral_sequence","synonyms":[{"name":"ambisense single stranded RNA virus","type":"exact"},{"name":"ambisense ssRNA viral sequence","type":"exact"}],"termid":"SO:0001202"}


id: PBO:0073955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 22 member 4","termid":"PBO:0073955"}


id: GO:0001403
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A growth pattern exhibited by budding haploid cells under certain growth conditions, in which cells retain the typical axial budding pattern of haploids, but become elongated and fail to separate after division; during growth on a solid substrate, this results in penetration of cells into the agar medium. An example of this process is found in Saccharomyces cerevisiae.","definition_xrefs":["PMID:9728395","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"invasive filamentous growth","termid":"GO:0036267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"invasive growth in response to glucose limitation","synonyms":[{"name":"colony morphology","type":"related"}],"termid":"GO:0001403"}


id: PBO:0091236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Con-6 family conserved fungal protein","termid":"PBO:0091236"}


id: GO:0035010
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Events resulting in the formation of a multilayered cellular sheath surrounding an invader and thus preventing its development. This defense mechanism is often seen in insects in response to nematodes or parasitoids, which are too large to be phagocytosed by individual hemocytes. In some organisms the capsule is blackened due to melanization.","definition_xrefs":["PMID:12225920","GO_REF:0000022","GOC:bf","PMID:11846478"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune effector process","termid":"GO:0002252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"encapsulation of foreign target","termid":"GO:0035010"}


id: PBO:0005094
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human hAGO2","termid":"PBO:0005094"}


id: PBO:0057554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 670","termid":"PBO:0057554"}


id: PBO:0030099
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_ornithine_level","termid":"PBO:0030099"}


id: PBO:0061168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear-encoded mitochondrial tRNA-Leu (TAA) 6-1","termid":"PBO:0061168"}


id: PBO:0068065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 370","termid":"PBO:0068065"}


id: PBO:0091547
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae SPT15","termid":"PBO:0091547"}


id: PBO:0061176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear-encoded mitochondrial tRNA-Gln (TTG) 6-1","termid":"PBO:0061176"}


id: PBO:0042941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromatin assembly factor 1 subunit B","termid":"PBO:0042941"}


id: PBO:0087769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of tRNA-specific adenosine-34 deaminase; forms a heterodimer with Tad3p that converts adenosine to inosine at the wobble position of several tRNAs","termid":"PBO:0087769"}


id: GO:0018704
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 5-chloro-2-hydroxymuconic semialdehyde + H+ + 2 e- = Cl- + 2-hydroxymuconic semialdehyde.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 5-chloro-2-hydroxymuconic semialdehyde dehalogenase activity (obsolete GO:0018704)","synonyms":[{"name":"5-chloro-2-hydroxymuconic semialdehyde dehalogenase activity","type":"exact"}],"termid":"GO:0018704"}


id: PR:Q8TFH7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tRNA-splicing endonuclease subunit Sen2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR21227:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-splicing endonuclease subunit sen2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB17E12.07c","secondary_identifiers":["UniProtKB:Q8TFH7"],"synonyms":[{"name":"SPAPB17E12.07c","type":"related"},{"name":"Spom972h-TSEN2","type":"exact"},{"name":"tRNA-intron endonuclease sen2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q8TFH7"}


id: PBO:0040006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARL14EP pseudogene 1","termid":"PBO:0040006"}


id: PR:O13811
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pdi2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13811"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein disulfide-isomerase C17H9.14c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17H9.14c","synonyms":[{"name":"Spom972h-pdi2","type":"exact"}],"termid":"PR:O13811"}


id: PBO:0005358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic spindle checkpoint protein Mad3","termid":"PBO:0005358"}


id: GO:1990567
data:
  {"annotated_genes":["SJAG_03126","SJAG_03500","SJAG_01599"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[96395,108028,114254],"is_not":false,"summary":null,"term":"GO:1990567"}]},"cv_name":"cellular_component","definition":"A protein serine/threonine phosphatase complex that in S. pombe consists of the proteins Dis2, Ppn1, and Swd22.","definition_xrefs":["PMID:24945319"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine phosphatase complex","termid":"GO:0008287"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01599":null,"SJAG_03126":null,"SJAG_03500":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"DPS complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990567","terms_by_termid":{"GO:1990567":null}}


id: PBO:0049544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B clustered histone 7","termid":"PBO:0049544"}


id: GO:0015796
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of galactitol across a membrane. Galactitol is the hexitol derived by the reduction of the aldehyde group of either D- or L-galactose.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyol transmembrane transport","termid":"GO:0015791"},{"relation_name":"is_a","term_name":"carbohydrate transmembrane transport","termid":"GO:0034219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"galactitol transmembrane transport","synonyms":[{"name":"galactitol transport","type":"broad"}],"termid":"GO:0015796"}


id: FYPO:0001375
data:
  {"alleles_by_uniquename":{"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115240],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007177"}],"single_locus_phenotype":[{"annotations":[115553],"is_not":false,"summary":null,"term":"FYPO:0001375"},{"annotations":[115241,115237,115229,115230],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007177"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a protein does not localize to, and is therefore absent from, a place where it is normally found.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization","termid":"FYPO:0001370"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01143":null,"SJAG_01665":null,"SJAG_01745":null,"SJAG_02392":null,"SJAG_03596":null,"SJAG_03703":null,"SJAG_04498":null,"SJAG_05207":null},"genotype_count":3,"genotypes_by_uniquename":{"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]},"mid1delta":{"display_name":"mid1delta","display_uniquename":"mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},"mid1delta__pom1delta":{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_02392","SJAG_01143"],"name":"abolished protein localization","references_by_uniquename":{"PMID:25866389":null,"PMID:32243490":null},"single_locus_annotated_genes":["SJAG_01143","SJAG_01745"],"single_locus_genotype_uniquenames":["lem2delta","mid1delta"],"synonyms":[{"name":"protein absent from specific location in cell","type":"related"},{"name":"protein localisation abolished","type":"exact"},{"name":"protein localization abolished","type":"exact"}],"termid":"FYPO:0001375","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0001375":null,"FYPO:0007177":null}}


id: PBO:0085069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-functional protein with homology IMP dehydrogenase; YAR073W/IMD1 and YAR075W comprise a continuous reading frame in most strains of S. cerevisiae; YAR073W/YAR075W together have a paralog, IMD2, that arose from a segmental duplication","termid":"PBO:0085069"}


id: FYPO:0004839
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in which the localization of a protein to the plasma membrane is abolished when the cell is subject to glucose starvation, and the protein is present in the cytoplasm instead.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"protein mislocalized to cytoplasm","termid":"FYPO:0004842"},{"relation_name":"is_a","term_name":"abnormal protein localization to plasma membrane","termid":"FYPO:0004838"},{"relation_name":"is_a","term_name":"protein mislocalized to cytoplasm","termid":"FYPO:0004842"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to plasma membrane, with protein mislocalized to cytoplasm, during glucose starvation","synonyms":[{"name":"abolished protein localisation to plasma membrane, with protein mislocalised to cytoplasm, during glucose starvation","type":"exact"},{"name":"abolished protein localization in plasma membrane, with protein mislocalized to cytoplasm, during glucose starvation","type":"exact"},{"name":"abolished protein localization to cell membrane, with protein mislocalized to cytoplasm, during glucose starvation","type":"exact"},{"name":"abolished protein localization to plasma membrane, with protein mislocalized to cytoplasm, during glucose depletion","type":"exact"},{"name":"abolished protein localization to plasma membrane, with protein mislocalized to cytoplasm, during glucose deprivation","type":"exact"},{"name":"abolished protein localization to plasma membrane, with protein mislocalized to cytoplasm, during glucose limitation","type":"related"},{"name":"protein localization to plasma membrane abolished, with protein mislocalized to cytoplasm, during glucose starvation","type":"exact"}],"termid":"FYPO:0004839"}


id: PBO:0082517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of the oligosaccharyltransferase complex of the ER lumen; complex catalyzes asparagine-linked glycosylation of newly synthesized proteins; forms a subcomplex with Ost3p and Ost4p","termid":"PBO:0082517"}


id: GO:0100045
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates arginine catabolic process.","definition_xrefs":["GOC:obol","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of arginine catabolic process by transcription from RNA polymerase II promoter (obsolete GO:0100045)","termid":"GO:0100045"}


id: PBO:0091664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane mannan endo-1,6-alpha-mannosidase Dfg502","termid":"PBO:0091664"}


id: PBO:0081014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZBTB46 antisense RNA 2","termid":"PBO:0081014"}


id: GO:1902176
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of an oxidative stress-induced intrinsic apoptotic signaling pathway.","definition_xrefs":["GOC:BHF","GOC:mtg_apoptosis","GOC:TermGenie","PMID:11672522"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of oxidative stress-induced intrinsic apoptotic signaling pathway","termid":"GO:1902175"},{"relation_name":"is_a","term_name":"negative regulation of intrinsic apoptotic signaling pathway","termid":"GO:2001243"},{"relation_name":"negatively_regulates","term_name":"intrinsic apoptotic signaling pathway in response to oxidative stress","termid":"GO:0008631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway","synonyms":[{"name":"down regulation of intrinsic apoptotic signaling pathway in response to oxidative stress","type":"exact"},{"name":"down-regulation of intrinsic apoptotic signaling pathway in response to oxidative stress","type":"exact"},{"name":"downregulation of intrinsic apoptotic signaling pathway in response to oxidative stress","type":"exact"},{"name":"inhibition of intrinsic apoptotic signaling pathway in response to oxidative stress","type":"narrow"},{"name":"negative regulation of intrinsic apoptotic signaling pathway in response to oxidative stress","type":"exact"}],"termid":"GO:1902176"}


id: GO:1901073
data:
  {"annotated_genes":["SJAG_04868","SJAG_04728","SJAG_00442","SJAG_03723","SJAG_00978"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84672,84844,100743,98880,84332],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006031"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glucosamine-containing compounds (glucosamines).","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino sugar biosynthetic process","termid":"GO:0046349"},{"relation_name":"is_a","term_name":"glucosamine-containing compound metabolic process","termid":"GO:1901071"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00442":null,"SJAG_00978":null,"SJAG_03723":null,"SJAG_04728":null,"SJAG_04868":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glucosamine-containing compound biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"glucosamine-containing compound anabolism","type":"exact"},{"name":"glucosamine-containing compound biosynthesis","type":"exact"},{"name":"glucosamine-containing compound formation","type":"exact"},{"name":"glucosamine-containing compound synthesis","type":"exact"},{"name":"glucosamines anabolism","type":"exact"},{"name":"glucosamines biosynthesis","type":"exact"},{"name":"glucosamines biosynthetic process","type":"exact"},{"name":"glucosamines formation","type":"exact"},{"name":"glucosamines synthesis","type":"exact"}],"termid":"GO:1901073","terms_by_termid":{"GO:0006031":null}}


id: GO:0030518
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A nuclear receptor-mediated signaling pathway initiated by a steroid binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:mah","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid hormone receptor signaling pathway","termid":"GO:0043401"},{"relation_name":"is_a","term_name":"nuclear receptor-mediated signaling pathway","termid":"GO:0141193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"nuclear receptor-mediated steroid hormone signaling pathway","synonyms":[{"name":"intracellular steroid hormone receptor signaling pathway","type":"exact"},{"name":"steroid hormone receptor signaling pathway","type":"broad"},{"name":"steroid hormone receptor signalling pathway","type":"broad"}],"termid":"GO:0030518"}


id: PR:Q09191
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA-directed RNA polymerases I, II, and III subunit RPABC1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR10535:SF0","OMA:SCHPO00420"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerases I, II, and III subunit RPABC1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23C4.15","secondary_identifiers":["UniProtKB:Q09191"],"synonyms":[{"name":"RNA polymerases I, II, and III subunit ABC1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RPC24B (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-POLR2E","type":"exact"}],"termid":"PR:Q09191"}


id: PATO:0000490
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000490 rhythym value (obsolete PATO:0000490)","termid":"PATO:0000490"}


id: PBO:0051160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-41 (pseudogene)","termid":"PBO:0051160"}


id: FYPO:0007841
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of peptide alpha-N-acetyltransferase activity is decreased.","definition_xrefs":["PomBase:mah","PMID:34019809"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal peptide alpha-N-acetyltransferase activity","termid":"FYPO:0007839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000661","FYPO:0000652","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"decreased peptide alpha-N-acetyltransferase activity","synonyms":[{"name":"decreased NAT activity","type":"related"},{"name":"decreased protein N-terminal acetyltransferase activity","type":"exact"},{"name":"reduced peptide alpha-N-acetyltransferase activity","type":"exact"}],"termid":"FYPO:0007841"}


id: GO:0031017
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the exocrine pancreas over time, from its formation to the mature structure. The exocrine pancreas produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells.","definition_xrefs":["GOC:cvs"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gland development","termid":"GO:0048732"},{"relation_name":"part_of","term_name":"pancreas development","termid":"GO:0031016"},{"relation_name":"part_of","term_name":"exocrine system development","termid":"GO:0035272"},{"relation_name":"part_of","term_name":"digestive system development","termid":"GO:0055123"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"exocrine pancreas development","termid":"GO:0031017"}


id: PBO:0111681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PARG pseudogene 1","termid":"PBO:0111681"}


id: PBO:0087411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit (17 kDa) of TFIID and SAGA complexes; involved in RNA polymerase II transcription initiation and in chromatin modification, similar to histone H3","termid":"PBO:0087411"}


id: GO:0007042
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces the pH of the lysosomal lumen, measured by the concentration of the hydrogen ion.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vacuolar acidification","termid":"GO:0007035"},{"relation_name":"is_a","term_name":"regulation of lysosomal lumen pH","termid":"GO:0035751"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lysosomal lumen acidification","synonyms":[{"name":"lysosome pH reduction","type":"exact"}],"termid":"GO:0007042"}


id: PBO:0087758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the tRNA splicing endonuclease; tRNA splicing endonuclease (Sen complex) is composed of Sen2p, Sen15p, Sen34p, and Sen54p; Sen complex also cleaves the CBP1 mRNA at the mitochondrial surface; Sen34p contains the active site for tRNA 3' splice site cleavage and has similarity to Sen2p and to Archaeal tRNA splicing endonuclease","termid":"PBO:0087758"}


id: FYPO:0007356
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which Smp focus formation is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:31811152","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein complex assembly","termid":"FYPO:0006839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal Smp focus formation","synonyms":[{"name":"normal Sme2 focus formation","type":"narrow"},{"name":"normal Smp dot formation","type":"exact"},{"name":"normal Smp focus assembly","type":"exact"}],"termid":"FYPO:0007356"}


id: PBO:0044408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily F member 1","termid":"PBO:0044408"}


id: GO:0120204
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: methylcytosine + L-ascorbate + O2 = 5-glyceryl-methylcytosine + glyoxylate + CO2.","definition_xrefs":["PMID:31043749"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"methylcytosine to 5-glyceryl-methylcytosine dioxygenase activity","termid":"GO:0120204"}


id: GO:0055095
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals mediated by the detection of a lipoprotein particle.","definition_xrefs":["GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal transduction","termid":"GO:0007165"},{"relation_name":"part_of","term_name":"cellular response to lipoprotein particle stimulus","termid":"GO:0071402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"lipoprotein particle mediated signaling","synonyms":[{"name":"lipoprotein mediated signalling","type":"exact"},{"name":"lipoprotein particle mediated signal transduction","type":"exact"},{"name":"lipoprotein particle-mediated signaling","type":"exact"}],"termid":"GO:0055095"}


id: PBO:0041041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRCA2 DNA repair associated","termid":"PBO:0041041"}


id: PBO:0049368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTF2I repeat domain containing 2B","termid":"PBO:0049368"}


id: GO:0034967
data:
  {"annotated_genes":["SJAG_04389","SJAG_04186","SJAG_01926","SJAG_04396","SJAG_03627"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89295,89330,93324,100282,110214],"is_not":false,"summary":null,"term":"GO:0034967"}]},"cv_name":"cellular_component","definition":"A histone deacetylase complex that is involved in transcriptional regulation. In S. cerevisiae, this complex consists of Set3p, Snt1p, Hos4p, Sif2p, Cpr1p, Hos2p, and Hst1p.","definition_xrefs":["GOC:ds","PMID:11711434"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone deacetylase complex","termid":"GO:0000118"},{"relation_name":"part_of","term_name":"nuclear chromosome","termid":"GO:0000228"},{"relation_name":"part_of","term_name":"chromatin","termid":"GO:0000785"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01926":null,"SJAG_03627":null,"SJAG_04186":null,"SJAG_04389":null,"SJAG_04396":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0005654","GO:0032991","GO:0005694"],"is_obsolete":false,"name":"Set3 complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"HDAC3 complex","type":"exact"},{"name":"SET3C","type":"exact"}],"termid":"GO:0034967","terms_by_termid":{"GO:0034967":null}}


id: GO:0033567
data:
  {"annotated_genes":["SJAG_02690","SJAG_00618","SJAG_02199","SJAG_04183","SJAG_00198","SJAG_05232","SJAG_02294"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100250,96741,88658,91164,88744,96705,97597],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903461"}]},"cv_name":"biological_process","definition":"The DNA metabolic process, occurring during lagging strand synthesis, by which RNA primers are removed from Okazaki fragments, the resulting gaps filled by DNA polymerization, and the ends ligated to form a continuous strand.","definition_xrefs":["ISBN:0716720094","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA metabolic process","termid":"GO:0006259"},{"relation_name":"part_of","term_name":"lagging strand elongation","termid":"GO:0006273"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00198":null,"SJAG_00618":null,"SJAG_02199":null,"SJAG_02294":null,"SJAG_02690":null,"SJAG_04183":null,"SJAG_05232":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0006260","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"DNA replication, Okazaki fragment processing","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0033567","terms_by_termid":{"GO:1903461":null}}


id: PBO:0066000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RALBP1 pseudogene 2","termid":"PBO:0066000"}


id: PBO:0042759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 41","termid":"PBO:0042759"}


id: PBO:0109018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD13C divergent transcript","termid":"PBO:0109018"}


id: PBO:0053929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1228","termid":"PBO:0053929"}


id: PBO:0048564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgi associated, gamma adaptin ear containing, ARF binding protein 2","termid":"PBO:0048564"}


id: PBO:0060582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NBPF member 19","termid":"PBO:0060582"}


id: GO:0009341
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that possesses beta-galactosidase activity, i.e. catalyzes the hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. In E. coli, the complex is a homotetramer; dimeric and hexameric beta-galactosidase complexes have been observed in other species.","definition_xrefs":["PMID:15950161"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"beta-galactosidase complex","termid":"GO:0009341"}


id: GO:0047560
data:
  {"annotated_genes":["SJAG_02488"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110855],"is_not":false,"summary":null,"term":"GO:0047560"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NADP+ + sphinganine = 3-dehydrosphinganine + H+ + NADPH.","definition_xrefs":["RHEA:22640","EC:1.1.1.102"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02488":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"3-dehydrosphinganine reductase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:3-DEHYDROSPHINGANINE-REDUCTASE-RXN","KEGG_REACTION:R02978","Reactome:R-HSA-428123"],"synonyms":[{"name":"3-ketosphinganine reductase activity","type":"related"},{"name":"3-oxosphinganine reductase activity","type":"related"},{"name":"3-oxosphinganine:NADPH oxidoreductase activity","type":"related"},{"name":"D-3-dehydrosphinganine reductase activity","type":"related"},{"name":"D-3-oxosphinganine reductase activity","type":"related"},{"name":"D-3-oxosphinganine:B-NADPH oxidoreductase activity","type":"related"},{"name":"D-erythro-dihydrosphingosine:NADP+ 3-oxidoreductase activity","type":"related"},{"name":"DSR activity","type":"related"},{"name":"KTS reductase activity","type":"related"}],"termid":"GO:0047560","terms_by_termid":{"GO:0047560":null}}


id: PBO:0070542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 8","termid":"PBO:0070542"}


id: PBO:0072267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S21 pseudogene 5","termid":"PBO:0072267"}


id: GO:0003818
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the inactivation of complement subcomponents C3b, iC3b and C4b by proteolytic cleavage.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete complement factor I activity (obsolete GO:0003818)","synonyms":[{"name":"C3b inactivator activity","type":"narrow"},{"name":"C3b/C4b inactivator activity","type":"related"},{"name":"C3bINA","type":"related"},{"name":"complement C3b inactivator","type":"related"},{"name":"complement C3b/C4b inactivator","type":"related"},{"name":"complement C4b inactivator","type":"related"},{"name":"complement C4bi","type":"related"},{"name":"complement component C3b inactivator activity","type":"related"},{"name":"complement factor I activity","type":"exact"},{"name":"conglutinogen-activating factor C","type":"related"},{"name":"factor I","type":"related"}],"termid":"GO:0003818"}


id: PBO:0052275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine demethylase 5C","termid":"PBO:0052275"}


id: PBO:0060961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear factor related to kappaB binding protein","termid":"PBO:0060961"}


id: PBO:0080617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WDR53 pseudogene 1","termid":"PBO:0080617"}


id: PBO:0088204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zn2-Cys6 zinc-finger transcription factor; activates genes involved in multidrug resistance; paralog of Yrm1p, acting on an overlapping set of target genes; YRR1 has a paralog, PDR8, that arose from the whole genome duplication","termid":"PBO:0088204"}


id: PR:Q10101
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 40S ribosomal protein S7 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11278:SF0","OMA:SCHPO00924","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC18G6.14c","secondary_identifiers":["UniProtKB:Q10101"],"synonyms":[{"name":"Spom972h-RPS7","type":"exact"}],"termid":"PR:Q10101"}


id: PBO:0028986
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-overlapping_meiosis_I_spindles","termid":"PBO:0028986"}


id: GO:0140956
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-lysyl79-[histone H3] + 3 S-adenosyl-L-methionine = 3 H+ + N6,N6,N6-trimethyl-L-lysyl79-[histone H3] + 3 S-adenosyl-L-homocysteine. This reaction is the successive addition of up to three methyl group to the lysine residue at position 79 of the histone H3 protein, producing H3K79me3.","definition_xrefs":["RHEA:60328","PMID:15371351"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3K79 methyltransferase activity","termid":"GO:0031151"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0140096","GO:0016741","GO:0008276","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"histone H3K79 trimethyltransferase activity","secondary_identifiers":["EC:2.1.1.360"],"synonyms":[{"name":"histone H3-K79 trimethylation","type":"broad"},{"name":"histone H3K79 trimethylase activity","type":"exact"},{"name":"histone H3K79 trimethylation","type":"broad"},{"name":"histone lysine N-trimethyltransferase activity (H3-K79 specific)","type":"exact"},{"name":"histone trimethylase activity (H3-K79 specific)","type":"exact"},{"name":"histone trimethyltransferase activity (H3-K79 specific)","type":"exact"},{"name":"histone-H3K79 trimethyltransferase activity","type":"exact"}],"termid":"GO:0140956"}


id: PBO:0065187
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prospero homeobox 1","termid":"PBO:0065187"}


id: GO:0061882
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of mitochondria along microtubules in axons away from the cell body and towards the presynapse.","definition_xrefs":["PMID:24302729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of intracellular transport","termid":"GO:0032387"},{"relation_name":"is_a","term_name":"regulation of anterograde axonal transport of mitochondrion","termid":"GO:0061880"},{"relation_name":"negatively_regulates","term_name":"anterograde axonal transport of mitochondrion","termid":"GO:0098957"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of anterograde axonal transport of mitochondrion","synonyms":[{"name":"negative regulation of anterograde axon transport of mitochondria","type":"exact"}],"termid":"GO:0061882"}


id: PBO:0070999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 1","termid":"PBO:0070999"}


id: PBO:0035972
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_invertase_activity","termid":"PBO:0035972"}


id: PBO:0073804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 6 member 10, pseudogene","termid":"PBO:0073804"}


id: PBO:0046263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein complex subunit 2","termid":"PBO:0046263"}


id: PBO:0075203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide G pseudogene 15","termid":"PBO:0075203"}


id: GO:0018281
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a C-terminal peptidyl-serine ethanolamide-linked glycosylsphingolipidinositol (GSI) anchor following hydrolysis of a seryl-peptide bond in the carboxy-terminal region of a membrane-associated protein.","definition_xrefs":["RESID:AA0166"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-serine modification","termid":"GO:0018209"},{"relation_name":"is_a","term_name":"GSI anchor biosynthetic process","termid":"GO:0042082"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"part_of","termid":"GO:0042158"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0042158","GO:0008150"],"is_obsolete":false,"name":"GSI anchor biosynthetic process via N-seryl-glycosylsphingolipidinositolethanolamine","synonyms":[{"name":"GSI anchor anabolism via N-seryl-glycosylsphingolipidinositolethanolamine","type":"exact"},{"name":"GSI anchor formation via N-seryl-glycosylsphingolipidinositolethanolamine","type":"exact"},{"name":"GSI anchor synthesis via N-seryl-glycosylsphingolipidinositolethanolamine","type":"exact"}],"termid":"GO:0018281"}


id: GO:0004283
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the preferential cleavage of Lys-Xaa > Arg-Xaa; higher selectivity than trypsin. Converts fibrin into soluble products.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete plasmin activity (obsolete GO:0004283)","synonyms":[{"name":"actase activity","type":"related"},{"name":"fibrinase activity","type":"related"},{"name":"fibrinolysin activity","type":"related"},{"name":"plasmin activity","type":"exact"},{"name":"serum tryptase activity","type":"related"},{"name":"thrombolysin","type":"related"}],"termid":"GO:0004283"}


id: GO:2000320
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of T-helper 17 cell differentiation.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of T-helper cell differentiation","termid":"GO:0045623"},{"relation_name":"is_a","term_name":"negative regulation of T-helper 17 type immune response","termid":"GO:2000317"},{"relation_name":"is_a","term_name":"regulation of T-helper 17 cell differentiation","termid":"GO:2000319"},{"relation_name":"negatively_regulates","term_name":"T-helper 17 cell differentiation","termid":"GO:0072539"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of T-helper 17 cell differentiation","synonyms":[{"name":"negative regulation of T-helper 17 cell development","type":"related"}],"termid":"GO:2000320"}


id: PBO:0005679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CBF1/Su(H)/LAG-1 family transcription factor Cbf12","termid":"PBO:0005679"}


id: GO:0098946
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the presynaptic endocytic zone membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:mah","GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of presynaptic endocytic zone membrane (obsolete GO:0098946)","synonyms":[{"name":"intrinsic to presynaptic active zone membrane","type":"narrow"}],"termid":"GO:0098946"}


id: PBO:0040113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with SH3 domain, ankyrin repeat and PH domain 3","termid":"PBO:0040113"}


id: PBO:0076691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor A like 8","termid":"PBO:0076691"}


id: PBO:0039526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD33B pseudogene 7","termid":"PBO:0039526"}


id: PBO:0004036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E/phosphatidylinositol(3)-phosphate binding protein (predicted)","termid":"PBO:0004036"}


id: GO:1990971
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Glycoprotein complex of the C1q/TNF superfamily found in the extracellular matrix (ECM) where it is an important component of the elastic fiber system. A homotrimer that will combine to form supramolecular EMILIN structures.","definition_xrefs":["PMID:10821830","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein complex involved in cell-matrix adhesion","termid":"GO:0098637"},{"relation_name":"part_of","term_name":"collagen-containing extracellular matrix","termid":"GO:0062023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"EMILIN complex","synonyms":[{"name":"EMILIN-1 complex","type":"narrow"},{"name":"EMILIN-2 complex","type":"narrow"},{"name":"Elastic microfibrillar interface 1 complex","type":"narrow"},{"name":"Elastic microfibrillar interface 2 complex","type":"narrow"}],"termid":"GO:1990971"}


id: GO:0042267
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed killing of a target cell by a natural killer cell through the release of granules containing cytotoxic mediators or through the engagement of death receptors.","definition_xrefs":["GOC:pr","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte mediated cytotoxicity","termid":"GO:0001909"},{"relation_name":"is_a","term_name":"natural killer cell mediated immunity","termid":"GO:0002228"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"natural killer cell mediated cytotoxicity","synonyms":[{"name":"NK cell mediated cell death","type":"exact"},{"name":"NK cell mediated cell killing","type":"exact"},{"name":"NK cell mediated cytolysis","type":"related"},{"name":"NK cell mediated cytotoxicity","type":"exact"},{"name":"killer activity","type":"related"},{"name":"natural killer cell mediated cell death","type":"exact"},{"name":"natural killer cell mediated cell killing","type":"exact"},{"name":"natural killer cell mediated cytolysis","type":"related"},{"name":"natural killer-cell mediated cytolysis","type":"related"}],"termid":"GO:0042267"}


id: FYPO:0006937
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which lipid binding by a gene product does not occur. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished molecular function","termid":"FYPO:0005446"},{"relation_name":"is_a","term_name":"abnormal lipid binding","termid":"FYPO:0007250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"abolished lipid binding","synonyms":[{"name":"lipid binding abolished","type":"exact"}],"termid":"FYPO:0006937"}


id: PBO:0033777
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_chromatin_organization_resulting_in_peripheral_chromatin_distribution","termid":"PBO:0033777"}


id: PBO:0060333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYO3B antisense RNA 1","termid":"PBO:0060333"}


id: FYPO:0008198
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the plasma membrane is decreased.","definition_xrefs":["PMID:15572668"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to plasma membrane during vegetative growth","termid":"FYPO:0002125"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to plasma membrane during vegetative growth","termid":"FYPO:0008198"}


id: PBO:0108972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ciliary microtubule inner protein 3","termid":"PBO:0108972"}


id: PBO:0052426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KISS1 receptor","termid":"PBO:0052426"}


id: GO:0051655
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a vesicle is maintained in a specific location within a cell and prevented from moving elsewhere.","definition_xrefs":["GOC:ai","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle localization","termid":"GO:0051648"},{"relation_name":"is_a","term_name":"maintenance of organelle location","termid":"GO:0051657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"maintenance of vesicle location","synonyms":[{"name":"maintenance of vesicle localization","type":"related"}],"termid":"GO:0051655"}


id: GO:0045897
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription that occurs during the mitotic cell cycle.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription during mitotic cell cycle (obsolete GO:0045897)","synonyms":[{"name":"activation of transcription during mitosis","type":"narrow"},{"name":"mitotic activation of transcription","type":"exact"},{"name":"positive regulation of transcription, mitotic","type":"exact"},{"name":"stimulation of transcription during mitosis","type":"narrow"},{"name":"up regulation of transcription during mitosis","type":"exact"},{"name":"up-regulation of transcription during mitosis","type":"exact"},{"name":"upregulation of transcription during mitosis","type":"exact"}],"termid":"GO:0045897"}


id: GO:0071987
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a WD40 repeat domain of a protein. The WD40 repeat is a short structural motif of approximately 40 amino acids, often terminating in a tryptophan-aspartic acid (W-D) dipeptide. Several of these repeats are combined to form a type of protein domain called the WD domain.","definition_xrefs":["GOC:yaf","InterPro:IPR017986"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"WD40-repeat domain binding","synonyms":[{"name":"WD domain binding","type":"exact"},{"name":"beta-transducin repeat domain binding","type":"exact"}],"termid":"GO:0071987"}


id: PBO:0002856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E4","termid":"PBO:0002856"}


id: GO:0005799
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete coatomer (obsolete GO:0005799)","synonyms":[{"name":"COPI vesicle","type":"related"},{"name":"coatomer","type":"exact"}],"termid":"GO:0005799"}


id: GO:0008317
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a gurken growth factor receptor.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete gurken receptor binding (obsolete GO:0008317)","synonyms":[{"name":"gurken receptor ligand","type":"narrow"}],"termid":"GO:0008317"}


id: GO:1902561
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an origin recognition complex.","definition_xrefs":["GOC:TermGenie","PMID:11717425"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"origin recognition complex assembly","synonyms":[{"name":"ORC assembly","type":"exact"},{"name":"ORC formation","type":"exact"},{"name":"origin of replication recognition complex assembly","type":"exact"},{"name":"origin of replication recognition complex formation","type":"exact"},{"name":"origin recognition complex formation","type":"exact"}],"termid":"GO:1902561"}


id: PBO:0026716
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_level_of_ubiquitinated_protein_in_cell","termid":"PBO:0026716"}


id: GO:0043879
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of glycolate from one side of a membrane to the other. Glycolate is the smallest alpha-hydroxy acid (AHA).","definition_xrefs":["RHEA:29447","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transmembrane transporter activity","termid":"GO:0008028"},{"relation_name":"is_a","term_name":"alcohol transmembrane transporter activity","termid":"GO:0015665"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"glycolate transmembrane transporter activity","synonyms":[{"name":"glcA","type":"related"},{"name":"glycolate permease","type":"related"},{"name":"glycolic acid transmembrane transporter activity","type":"exact"},{"name":"hydroxyacetic acid transmembrane transporter activity","type":"exact"}],"termid":"GO:0043879"}


id: GO:0098992
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A dense core vesicle (granule) that is part of a neuron. These vesicles typically contain neuropeptides. They can be found in all parts of neurons, including the soma, dendrites, axonal swellings (varicosities) and synaptic terminals.","definition_xrefs":["GOC:dos","ISBN:978-0-07-181001-2","Wikipedia:Neuropeptide&oldid=713905176"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dense core granule","termid":"GO:0031045"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0031410","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"neuronal dense core vesicle","termid":"GO:0098992"}


id: GO:0002308
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a precursor cell type acquires the specialized features of a CD8-positive, alpha-beta cytotoxic T cell.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CD8-positive, alpha-beta T cell differentiation","termid":"GO:0043374"},{"relation_name":"is_a","term_name":"cytotoxic T cell differentiation","termid":"GO:0045065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CD8-positive, alpha-beta cytotoxic T cell differentiation","synonyms":[{"name":"CD8-positive, alpha-beta cytotoxic T cell development","type":"related"},{"name":"CD8-positive, alpha-beta cytotoxic T lymphocyte differentiation","type":"exact"},{"name":"CD8-positive, alpha-beta cytotoxic T-cell differentiation","type":"exact"},{"name":"CD8-positive, alpha-beta cytotoxic T-lymphocyte differentiation","type":"exact"}],"termid":"GO:0002308"}


id: GO:0070794
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of conidiophore development, a process that leads to the formation of a conidiophore. The conidiophore is a specialized hypha that extends aerially from the growth substrate and bears conidia, or asexual spores.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of conidiophore development","termid":"GO:0070793"},{"relation_name":"is_a","term_name":"negative regulation of spore-bearing organ development","termid":"GO:0075262"},{"relation_name":"negatively_regulates","term_name":"conidiophore development","termid":"GO:0070787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of conidiophore development","termid":"GO:0070794"}


id: PBO:0028714
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_rate_of_premeiotic_DNA_replication","termid":"PBO:0028714"}


id: PBO:0050307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 9","termid":"PBO:0050307"}


id: GO:1901878
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of calcium ion binding.","definition_xrefs":["GOC:rl","GOC:TermGenie","PMID:16432188","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of binding","termid":"GO:0051099"},{"relation_name":"is_a","term_name":"regulation of calcium ion binding","termid":"GO:1901876"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of calcium ion binding","synonyms":[{"name":"activation of calcium ion binding","type":"narrow"},{"name":"activation of calcium ion storage activity","type":"related"},{"name":"positive regulation of calcium ion storage activity","type":"related"},{"name":"up regulation of calcium ion binding","type":"exact"},{"name":"up regulation of calcium ion storage activity","type":"related"},{"name":"up-regulation of calcium ion binding","type":"exact"},{"name":"up-regulation of calcium ion storage activity","type":"related"},{"name":"upregulation of calcium ion binding","type":"exact"},{"name":"upregulation of calcium ion storage activity","type":"related"}],"termid":"GO:1901878"}


id: GO:0018755
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-chloro-4-hydroxy-6-amino-1,3,5-triazine + OH- = 2,4-dihydroxy-6-amino-1,3,5-triazine + Cl-.","definition_xrefs":["UM-BBD_reactionID:r1414"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016810","GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"2-chloro-4-hydroxy-6-amino-1,3,5-triazine aminohydrolase activity","termid":"GO:0018755"}


id: PR:P09627
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pma1 gene.","definition_xrefs":["UniProtKB:P09627","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane ATPase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1071.10c","synonyms":[{"name":"Spom972h-pma1","type":"exact"},{"name":"proton pump 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P09627"}


id: GO:0034146
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to toll-like receptor 5.","definition_xrefs":["PMID:16551253","PMID:17328678","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface toll-like receptor signaling pathway","termid":"GO:0140895"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"toll-like receptor 5 signaling pathway","synonyms":[{"name":"TLR5 signaling pathway","type":"exact"},{"name":"toll-like receptor 5 signalling pathway","type":"exact"}],"termid":"GO:0034146"}


id: GO:2000982
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of inner ear receptor cell differentiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of mechanoreceptor differentiation","termid":"GO:0045633"},{"relation_name":"is_a","term_name":"regulation of inner ear receptor cell differentiation","termid":"GO:2000980"},{"relation_name":"positively_regulates","term_name":"inner ear receptor cell differentiation","termid":"GO:0060113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of inner ear receptor cell differentiation","synonyms":[{"name":"positive regulation of inner ear hair cell differentiation","type":"exact"}],"termid":"GO:2000982"}


id: PBO:0045161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein axonemal intermediate chain 1","termid":"PBO:0045161"}


id: PBO:0090584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichol kinase Sec59","termid":"PBO:0090584"}


id: GO:0018508
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. OBSOLETE. Catalysis of the reaction: cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate + NAD+ = catechol + CO2 + NADH + H+.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete obsolete cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase activity (obsolete GO:0018508)","synonyms":[{"name":"benzoate cis-diol dehydrogenase activity","type":"exact"}],"termid":"GO:0018508"}


id: PBO:0060420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetylated alpha-linked acidic dipeptidase like 1","termid":"PBO:0060420"}


id: PBO:0031841
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_endoplasmic_reticulum_morphology","termid":"PBO:0031841"}


id: RO:HOM0000044
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Homocracy that involves morphologically and phylogenetically disparate structures that are the result of parallel evolution.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_homocracy_relationship_with","termid":"RO:HOM0000003"},{"relation_name":"is_a","term_name":"in_parallelism_relationship_with","termid":"RO:HOM0000005"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_deep_homology_relationship_with","synonyms":[{"name":"deep genetic homology","type":"exact"},{"name":"deep homologous to","type":"exact"},{"name":"generative homology","type":"related"},{"name":"homoiology","type":"related"}],"termid":"RO:HOM0000044"}


id: PBO:0046951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 74 member A6","termid":"PBO:0046951"}


id: PBO:0088816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-acyldihydroxyacetone phosphate reductase Ayr1","termid":"PBO:0088816"}


id: PBO:0091916
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae CWC23","termid":"PBO:0091916"}


id: GO:0061813
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a ARID domain. The AT-rich interaction domain (ARID) is an ~100-amino acid DNA-binding module found in a large number of eukaryotic transcription factors.","definition_xrefs":["InterPro:IPR001606","PMID:18270511","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete ARID domain binding (obsolete GO:0061813)","termid":"GO:0061813"}


id: PBO:0051615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 37","termid":"PBO:0051615"}


id: PBO:0046439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EPM2A interacting protein 1","termid":"PBO:0046439"}


id: GO:0050815
data:
  {"annotated_genes":["SJAG_04933","SJAG_03118"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71491,76883],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990269"}]},"cv_name":"molecular_function","definition":"Binding to a phosphorylated serine residue within a protein.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein phosphorylated amino acid binding","termid":"GO:0045309"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03118":null,"SJAG_04933":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"phosphoserine residue binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"phosphoserine binding","type":"related"}],"termid":"GO:0050815","terms_by_termid":{"GO:1990269":null}}


id: PBO:0011503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron-sulfur ATPase involved in ribosome biogenesis and translation Rli1 (predicted)","termid":"PBO:0011503"}


id: PBO:0081819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 736 pseudogene 12, Y-linked","termid":"PBO:0081819"}


id: PBO:0052424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KIRREL3 antisense RNA 3","termid":"PBO:0052424"}


id: PATO:0001735
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of liquids.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"quality of a liquid","termid":"PATO:0001548"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"liquid configuration","synonyms":[{"name":"liquid","type":"exact"}],"termid":"PATO:0001735"}


id: GO:0043368
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of sparing immature T cells which react with self-MHC protein complexes with low affinity levels from apoptotic death.","definition_xrefs":["PMID:12414722","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell selection","termid":"GO:0045058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive T cell selection","synonyms":[{"name":"positive T lymphocyte selection","type":"exact"},{"name":"positive T-cell selection","type":"exact"},{"name":"positive T-lymphocyte selection","type":"exact"}],"termid":"GO:0043368"}


id: GO:0002868
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of B cell deletion.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of B cell tolerance induction","termid":"GO:0002662"},{"relation_name":"is_a","term_name":"regulation of acute inflammatory response","termid":"GO:0002673"},{"relation_name":"is_a","term_name":"regulation of B cell deletion","termid":"GO:0002867"},{"relation_name":"is_a","term_name":"negative regulation of B cell apoptotic process","termid":"GO:0002903"},{"relation_name":"is_a","term_name":"negative regulation of apoptotic process involved in development","termid":"GO:1904746"},{"relation_name":"negatively_regulates","term_name":"B cell deletion","termid":"GO:0002516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of B cell deletion","synonyms":[{"name":"down regulation of B cell deletion","type":"exact"},{"name":"down-regulation of B cell deletion","type":"exact"},{"name":"downregulation of B cell deletion","type":"exact"},{"name":"inhibition of B cell deletion","type":"narrow"},{"name":"negative regulation of B lymphocyte deletion","type":"exact"},{"name":"negative regulation of B-cell deletion","type":"exact"},{"name":"negative regulation of B-lymphocyte deletion","type":"exact"}],"termid":"GO:0002868"}


id: PR:Q9USY2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A squamous cell carcinoma antigen recognized by T-cells 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04004","PANTHER:PTHR23269:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized RNA-binding protein C1861.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1861.04c","secondary_identifiers":["UniProtKB:Q9USY2"],"synonyms":[{"name":"Spom972h-SART3","type":"exact"}],"termid":"PR:Q9USY2"}


id: PBO:0089650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CIA machinery iron hydrogenase Nar1","termid":"PBO:0089650"}


id: GO:0061229
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a mesonephric juxtaglomerulus cell over time, from its formation to the mature structure.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"juxtaglomerulus cell development","termid":"GO:0072142"},{"relation_name":"part_of","term_name":"mesonephric juxtaglomerulus cell differentiation","termid":"GO:0061207"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric juxtaglomerulus cell development","termid":"GO:0061229"}


id: GO:0052217
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The movement of a motile cell or organism in response to environmental oxygen on, within or near a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete aerotaxis in environment of other organism involved in symbiotic interaction (obsolete GO:0052217)","synonyms":[{"name":"aerotaxis in environment of other organism during symbiotic interaction","type":"related"},{"name":"aerotaxis in response to environment of other organism","type":"exact"}],"termid":"GO:0052217"}


id: PBO:0002880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine phosphatase Pyp2","termid":"PBO:0002880"}


id: SO:0000023
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The kink turn (K-turn) is an RNA structural motif that creates a sharp (~120 degree) bend between two continuous helices.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asymmetric_RNA_internal_loop","termid":"SO:0000021"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"K_turn_RNA_motif","secondary_identifiers":["http://en.wikipedia.org/wiki/K-turn"],"synonyms":[{"name":"K turn RNA motif","type":"exact"},{"name":"K-turn","type":"exact"},{"name":"kink turn","type":"exact"},{"name":"kink-turn motif","type":"exact"}],"termid":"SO:0000023"}


id: PBO:0079167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSPEAR antisense RNA 2","termid":"PBO:0079167"}


id: PBO:0049039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 31","termid":"PBO:0049039"}


id: SO:0001223
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing an epigenetic process where a gene is inactivated by histone deacetylation.","definition_xrefs":["RSC:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"silenced_by_histone_modification","termid":"SO:0001221"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"silenced_by_histone_deacetylation","synonyms":[{"name":"silenced by histone deacetylation","type":"exact"}],"termid":"SO:0001223"}


id: PBO:0064801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP1CB divergent transcript","termid":"PBO:0064801"}


id: GO:0110038
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of nematode male tail tip morphogenesis.","definition_xrefs":["PMID:28068334","GOC:rz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of nematode male tail tip morphogenesis","termid":"GO:0110037"},{"relation_name":"negatively_regulates","term_name":"nematode male tail tip morphogenesis","termid":"GO:0045138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of nematode male tail tip morphogenesis","termid":"GO:0110038"}


id: PBO:0083834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Evolutionarily conserved 19S regulatory particle assembly-chaperone; involved in assembly of the base subcomplex of the 19S proteasomal regulatory particle (RP); non-essential gene; interacts with Rpn4p; protein abundance increases in response to DNA replication stress; ortholog of human p27","termid":"PBO:0083834"}


id: PBO:0087765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p); TORC2 is a membrane-associated complex that regulates actin cytoskeletal dynamics during polarized growth and cell wall integrity; involved in sphingolipid metabolism; contains a RasGEFN domain","termid":"PBO:0087765"}


id: PBO:0088374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication factor C complex subunit Rfc5","termid":"PBO:0088374"}


id: PBO:0040346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase membrane subunit f pseudogene 3","termid":"PBO:0040346"}


id: GO:1903921
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein processing in phagocytic vesicle.","definition_xrefs":["GO_REF:0000058","PMID:23325791","GOC:TermGenie","GOC:als"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein processing","termid":"GO:0070613"},{"relation_name":"regulates","term_name":"protein processing in phagocytic vesicle","termid":"GO:1900756"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0051604"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0051604"],"is_obsolete":false,"name":"regulation of protein processing in phagocytic vesicle","synonyms":[{"name":"regulation of peptidolysis during protein maturation in phagocytic vesicle","type":"related"},{"name":"regulation of peptidolysis during protein maturation in phagosome","type":"related"},{"name":"regulation of protein maturation by peptide bond cleavage in phagocytic vesicle","type":"exact"},{"name":"regulation of protein maturation by peptide bond cleavage in phagosome","type":"exact"},{"name":"regulation of protein maturation by peptide bond hydrolysis in phagocytic vesicle","type":"exact"},{"name":"regulation of protein maturation by peptide bond hydrolysis in phagosome","type":"exact"},{"name":"regulation of protein maturation by proteolysis in phagocytic vesicle","type":"related"},{"name":"regulation of protein maturation by proteolysis in phagosome","type":"related"},{"name":"regulation of protein processing in phagosome","type":"exact"}],"termid":"GO:1903921"}


id: PBO:0053454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 404","termid":"PBO:0053454"}


id: GO:0016594
data:
  {"annotated_genes":["SJAG_03861"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84811],"is_not":false,"summary":null,"term":"GO:0016594"}]},"cv_name":"molecular_function","definition":"Binding to glycine, aminoethanoic acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid binding","termid":"GO:0016597"},{"relation_name":"is_a","term_name":"carboxylic acid binding","termid":"GO:0031406"},{"relation_name":"is_a","term_name":"cation binding","termid":"GO:0043169"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03861":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"glycine binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Gly binding","type":"exact"},{"name":"aminoacetic acid binding","type":"exact"},{"name":"aminoethanoic acid binding","type":"exact"}],"termid":"GO:0016594","terms_by_termid":{"GO:0016594":null}}


id: PBO:0056950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 16-2","termid":"PBO:0056950"}


id: GO:0098683
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ribbon synpase of an auditory hair cell of the cochlear. These ribbon synapses contain spherical synaptic ribbons and lack and arciform density.","definition_xrefs":["PMID:15626493"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribbon synapse","termid":"GO:0097470"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cochlear hair cell ribbon synapse","termid":"GO:0098683"}


id: FYPO:0001257
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to the level of oxygen is normal (i.e. indistinguishable from wild type). Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein level during vegetative growth","termid":"FYPO:0000833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal protein level during cellular response to oxygen","synonyms":[{"name":"normal protein accumulation during cellular response to oxygen","type":"related"},{"name":"normal protein level during cellular response to oxygen during mitotic cell cycle","type":"related"},{"name":"normal protein level during cellular response to oxygen during vegetative growth","type":"exact"},{"name":"normal protein level during cellular response to oxygen levels","type":"exact"}],"termid":"FYPO:0001257"}


id: GO:0017061
data:
  {"annotated_genes":["SJAG_03881"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[85905],"is_not":false,"summary":null,"term":"GO:0017061"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 5'-methylthioadenosine + phosphate = adenine + 5-methylthio-D-ribose 1-phosphate.","definition_xrefs":["EC:2.4.2.28"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine-nucleoside phosphorylase activity","termid":"GO:0004731"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03881":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016740","GO:0016757","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"S-methyl-5-thioadenosine phosphorylase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:5-METHYLTHIOADENOSINE-PHOSPHORYLASE-RXN","RHEA:11852","Reactome:R-HSA-1237160"],"synonyms":[{"name":"5'-deoxy-5'-methylthioadenosine phosphorylase activity","type":"related"},{"name":"5'-methylthioadenosine phosphorylase activity","type":"exact"},{"name":"5'-methylthioadenosine:phosphate methylthio-D-ribosyl-transferase activity","type":"related"},{"name":"MTA phosphorylase activity","type":"related"},{"name":"MTAPase activity","type":"related"},{"name":"MeSAdo phosphorylase activity","type":"related"},{"name":"MeSAdo/Ado phosphorylase activity","type":"related"},{"name":"S-methyl-5-thioadenosine:phosphate S-methyl-5-thio-alpha-D-ribosyl-transferase activity","type":"related"},{"name":"methylthioadenosine nucleoside phosphorylase activity","type":"related"},{"name":"methylthioadenosine phosphorylase activity","type":"related"}],"termid":"GO:0017061","terms_by_termid":{"GO:0017061":null}}


id: GO:0080047
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-beta-L-galactose + phosphate = beta-L-galactose-1-phosphate + GDP.","definition_xrefs":["PMID:18463094","RHEA:27698","PMID:17462988"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanylyltransferase activity","termid":"GO:0070568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016779"],"is_obsolete":false,"name":"GDP-L-galactose phosphorylase activity","secondary_identifiers":["GO:0010475","EC:2.7.7.69","MetaCyc:RXNQT-4141"],"synonyms":[{"name":"GDP:galactose-1-phosphate guanyltransferase activity","type":"exact"},{"name":"galactose-1-phosphate guanylyltransferase (GDP) activity","type":"exact"}],"termid":"GO:0080047"}


id: PBO:0061890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligophrenin 1","termid":"PBO:0061890"}


id: GO:0019532
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of oxalate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oxalate, or ethanedioic acid, occurs in many plants and is highly toxic to animals.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid transport","termid":"GO:0006835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"oxalate transport","synonyms":[{"name":"ethanedioate transport","type":"exact"},{"name":"ethanedioic acid transport","type":"exact"},{"name":"oxalic acid transport","type":"exact"}],"termid":"GO:0019532"}


id: GO:0033518
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of removing one or more phosphate group from myo-inositol hexakisphosphate.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete myo-inositol hexakisphosphate dephosphorylation (obsolete GO:0033518)","synonyms":[{"name":"phytate dephosphorylation","type":"exact"}],"termid":"GO:0033518"}


id: GO:0160023
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A reflex process that expels air forcibly from the mouth and nose in an explosive, spasmodic involuntary action resulting chiefly from irritation of the nasal mucous membrane.","definition_xrefs":["PMID:34133943"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reflex","termid":"GO:0060004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sneeze reflex","synonyms":[{"name":"sternutation","type":"exact"}],"termid":"GO:0160023"}


id: PBO:0060095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 42","termid":"PBO:0060095"}


id: GO:0033865
data:
  {"annotated_genes":["SJAG_00866","SJAG_00982","SJAG_04895","SJAG_03349","SJAG_03731","SJAG_04865","SJAG_03290","SJAG_02769","SJAG_03471","SJAG_04288","SJAG_04007","SJAG_01402","SJAG_02006","SJAG_01474","SJAG_03909","SJAG_03313","SJAG_02380","SJAG_01524","SJAG_03064","SJAG_02158","SJAG_00947","SJAG_04627","SJAG_00902","SJAG_05277","SJAG_02741","SJAG_03715","SJAG_01187","SJAG_03813","SJAG_01139","SJAG_01989","SJAG_02247","SJAG_04499","SJAG_00427"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89351,94481],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006085"},{"annotations":[112165],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019427"},{"annotations":[113112],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990181"},{"annotations":[110308,83568,114500,104670,95127,91110],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006086"},{"annotations":[87544,110414,111821,94144],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006084"},{"annotations":[92920,104789],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006637"},{"annotations":[88322,85502,106680,110905,113113],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015937"},{"annotations":[95938],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015938"},{"annotations":[92695,84838,110969,90551],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019287"},{"annotations":[103554],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035338"},{"annotations":[109493,101675],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035336"},{"annotations":[94460],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001295"},{"annotations":[111539,107447],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:2001211"},{"annotations":[86041,111036],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006104"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving a nucleoside bisphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar.","definition_xrefs":["GOC:pde","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside phosphate metabolic process","termid":"GO:0006753"}],"gene_count":33,"genes_by_uniquename":{"SJAG_00427":null,"SJAG_00866":null,"SJAG_00902":null,"SJAG_00947":null,"SJAG_00982":null,"SJAG_01139":null,"SJAG_01187":null,"SJAG_01402":null,"SJAG_01474":null,"SJAG_01524":null,"SJAG_01989":null,"SJAG_02006":null,"SJAG_02158":null,"SJAG_02247":null,"SJAG_02380":null,"SJAG_02741":null,"SJAG_02769":null,"SJAG_03064":null,"SJAG_03290":null,"SJAG_03313":null,"SJAG_03349":null,"SJAG_03471":null,"SJAG_03715":null,"SJAG_03731":null,"SJAG_03813":null,"SJAG_03909":null,"SJAG_04007":null,"SJAG_04288":null,"SJAG_04499":null,"SJAG_04627":null,"SJAG_04865":null,"SJAG_04895":null,"SJAG_05277":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"nucleoside bisphosphate metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"nucleoside bisphosphate metabolism","type":"exact"}],"termid":"GO:0033865","terms_by_termid":{"GO:0006084":null,"GO:0006085":null,"GO:0006086":null,"GO:0006104":null,"GO:0006637":null,"GO:0015937":null,"GO:0015938":null,"GO:0019287":null,"GO:0019427":null,"GO:0035336":null,"GO:0035338":null,"GO:1990181":null,"GO:2001211":null,"GO:2001295":null}}


id: PR:O13965
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug70 gene.","definition_xrefs":["UniProtKB:O13965","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 70 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC24C9.05c","synonyms":[{"name":"Spom972h-mug70","type":"exact"}],"termid":"PR:O13965"}


id: PBO:0049567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B histone pseudogene 3","termid":"PBO:0049567"}


id: PBO:0054507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1907","termid":"PBO:0054507"}


id: GO:0002857
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of natural killer cell mediated immune response to a tumor cell.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of natural killer cell mediated immunity","termid":"GO:0002717"},{"relation_name":"is_a","term_name":"positive regulation of immune response to tumor cell","termid":"GO:0002839"},{"relation_name":"is_a","term_name":"regulation of natural killer cell mediated immune response to tumor cell","termid":"GO:0002855"},{"relation_name":"positively_regulates","term_name":"natural killer cell mediated immune response to tumor cell","termid":"GO:0002423"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of natural killer cell mediated immune response to tumor cell","synonyms":[{"name":"activation of natural killer cell mediated immune response to tumor cell","type":"narrow"},{"name":"stimulation of natural killer cell mediated immune response to tumor cell","type":"narrow"},{"name":"up regulation of natural killer cell mediated immune response to tumor cell","type":"exact"},{"name":"up-regulation of natural killer cell mediated immune response to tumor cell","type":"exact"},{"name":"upregulation of natural killer cell mediated immune response to tumor cell","type":"exact"}],"termid":"GO:0002857"}


id: PBO:0081274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 37C, pseudogene","termid":"PBO:0081274"}


id: GO:0102004
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-(all-trans-octaprenyl)benzene-1,2-diol + S-adenosyl-L-methionine = H+ + 2-methoxy-6-(all-trans-octaprenyl)phenol + S-adenosyl-L-homocysteine.","definition_xrefs":["EC:2.1.1.222"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-polyprenyl-6-hydroxyphenol O-methyltransferase activity","termid":"GO:1990888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"2-octaprenyl-6-hydroxyphenol methylase activity","secondary_identifiers":["RHEA:27770","MetaCyc:2-OCTAPRENYL-6-OHPHENOL-METHY-RXN"],"termid":"GO:0102004"}


id: GO:0045624
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of T-helper cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of immune effector process","termid":"GO:0002699"},{"relation_name":"is_a","term_name":"positive regulation of CD4-positive, alpha-beta T cell differentiation","termid":"GO:0043372"},{"relation_name":"is_a","term_name":"regulation of T-helper cell differentiation","termid":"GO:0045622"},{"relation_name":"is_a","term_name":"positive regulation of immune response","termid":"GO:0050778"},{"relation_name":"positively_regulates","term_name":"T-helper cell differentiation","termid":"GO:0042093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"positive regulation of T-helper cell differentiation","synonyms":[{"name":"activation of T-helper cell differentiation","type":"narrow"},{"name":"positive regulation of T-helper cell development","type":"related"},{"name":"stimulation of T-helper cell differentiation","type":"narrow"},{"name":"up regulation of T-helper cell differentiation","type":"exact"},{"name":"up-regulation of T-helper cell differentiation","type":"exact"},{"name":"upregulation of T-helper cell differentiation","type":"exact"}],"termid":"GO:0045624"}


id: GO:0030546
data:
  {"annotated_genes":["SJAG_05000"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95547],"is_not":false,"summary":null,"term":"GO:0030546"}]},"cv_name":"molecular_function","definition":"The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased.","definition_xrefs":["GOC:ceb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor regulator activity","termid":"GO:0030545"},{"relation_name":"is_a","term_name":"molecular function activator activity","termid":"GO:0140677"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05000":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0140677"}],"interesting_parent_ids":["GO:0140677","GO:0098772","GO:0003674"],"is_obsolete":false,"name":"signaling receptor activator activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"receptor activator activity","type":"broad"},{"name":"signalling receptor activator activity","type":"exact"}],"termid":"GO:0030546","terms_by_termid":{"GO:0030546":null}}


id: PBO:0089017
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"porphobilinogen synthase Hem2","termid":"PBO:0089017"}


id: GO:0034653
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of retinoic acid, one of the three components that makes up vitamin A.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diterpenoid catabolic process","termid":"GO:0016103"},{"relation_name":"is_a","term_name":"fat-soluble vitamin catabolic process","termid":"GO:0042363"},{"relation_name":"is_a","term_name":"retinoic acid metabolic process","termid":"GO:0042573"},{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0006766"}],"interesting_parent_ids":["GO:0044248","GO:0006629","GO:0044281","GO:0008150","GO:0006766"],"is_obsolete":false,"name":"retinoic acid catabolic process","synonyms":[{"name":"retinoic acid breakdown","type":"exact"},{"name":"retinoic acid catabolism","type":"exact"},{"name":"retinoic acid degradation","type":"exact"},{"name":"vitamin A1 acid catabolic process","type":"exact"}],"termid":"GO:0034653"}


id: RO:0001022
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relation between a condition (a phenotype or disease) of a host and a material entity, in which the material entity is not part of the host, and is considered harmless to non-allergic hosts, and the condition results in pathological processes that include an abnormally strong immune response against the material entity.","direct_ancestors":[{"relation_name":"is_a","term_name":"causes_or_contributes_to_condition","termid":"RO:0003302"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_allergic_trigger","termid":"RO:0001022"}


id: PBO:0089442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane urea transmembrane transporter","termid":"PBO:0089442"}


id: GO:0071334
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a rhamnose stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to rhamnose","termid":"GO:0032149"},{"relation_name":"is_a","term_name":"cellular response to hexose stimulus","termid":"GO:0071331"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to rhamnose stimulus","synonyms":[{"name":"cellular response to L-rhamnose stimulus","type":"narrow"}],"termid":"GO:0071334"}


id: PBO:0113013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Aurora kinase of the chromosomal passenger complex; mediates release of mono-oriented kinetochores from microtubules in MI, and kinetochore release from SPB clusters during meiotic exit; maintains meiotic spindle checkpoint delay in a mek1 null; maintains condensed chromosomes in anaphase; required for SPB cohesion and preventing multipolar spindle formation; promotes telomerase release at G2/M; Iocalizes to nuclear foci that diffuse upon DNA replication stress; inhibits Pse1p upon SAC arrest","termid":"PBO:0113013"}


id: PBO:0083251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; identified by homology to a hemiascomycetous yeast protein","termid":"PBO:0083251"}


id: PBO:0029507
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_swollen_spore_with_abnormal_shape","termid":"PBO:0029507"}


id: PBO:0027006
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_prospore_membrane_formation","termid":"PBO:0027006"}


id: FYPO:0004418
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation despite abnormal chromosome segregation, and in which the export of polyadenylated mRNA from the nucleus is decreased. The daughter cells produced by septation are both inviable. Export of all polyadenylated mRNAs or a specific mRNA may be affected.","definition_xrefs":["PomBase:mah","PMID:14511667","PomBase:vw"],"direct_ancestors":[{"relation_name":"has_part","term_name":"cut","termid":"FYPO:0000229"},{"relation_name":"has_part","term_name":"decreased poly(A)+ mRNA export from nucleus","termid":"FYPO:0002522"},{"relation_name":"is_a","term_name":"abnormal vegetative cell phenotype","termid":"FYPO:0003755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000641"},{"rel_name":"has_part","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0000032"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0006551"},{"rel_name":"has_part","termid":"FYPO:0000337"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0000002","FYPO:0000631","FYPO:0006551","FYPO:0000032","FYPO:0000641","FYPO:0000337","FYPO:0001320","FYPO:0000004"],"is_obsolete":false,"name":"cut cell with decreased poly(A)+ mRNA export from nucleus","synonyms":[{"name":"cut cell with decreased poly(A)+ mRNA export from nucleus during mitotic cell cycle","type":"related"},{"name":"cut cell with decreased poly(A)+ mRNA export from nucleus during vegetative growth","type":"exact"},{"name":"cut cell with reduced poly(A)+ mRNA export from nucleus","type":"exact"},{"name":"cut with decreased poly(A)+ mRNA export from nucleus","type":"exact"},{"name":"decreased poly(A) mRNA export in cut","type":"exact"},{"name":"septation following abnormal mitotic chromosome segregation with decreased poly(A)+ mRNA export from nucleus","type":"exact"}],"termid":"FYPO:0004418"}


id: PBO:0035994
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_movement_within_plasma_membrane_during_vegetative_growth","termid":"PBO:0035994"}


id: GO:0062234
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of platelet activating factor, 2-O-acetyl-1-O-octadecyl-sn-glycero-3-phosphocholine.","definition_xrefs":["PMID:16371369"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycerol ether catabolic process","termid":"GO:0044269"},{"relation_name":"is_a","term_name":"platelet activating factor metabolic process","termid":"GO:0046469"},{"relation_name":"is_a","term_name":"glycerophospholipid catabolic process","termid":"GO:0046475"},{"relation_name":"is_a","term_name":"organonitrogen compound catabolic process","termid":"GO:1901565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044248","GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"platelet activating factor catabolic process","synonyms":[{"name":"2-O-acetyl-1-O-octadecyl-sn-glycero-3-phosphocholine catabolic process","type":"exact"},{"name":"PAF catabolic process","type":"related"}],"termid":"GO:0062234"}


id: PBO:0077411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 147","termid":"PBO:0077411"}


id: GO:0006283
data:
  {"annotated_genes":["SJAG_02116","SJAG_04540","SJAG_04778","SJAG_04114","SJAG_01540","SJAG_00119","SJAG_03206","SJAG_01480","SJAG_03454","SJAG_04353"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84315,84503,86380,86983,88077,92837,97873,105458,107225,114955],"is_not":false,"summary":null,"term":"GO:0006283"}]},"cv_name":"biological_process","definition":"The nucleotide-excision repair process that carries out preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the global genome nucleotide excision repair pathway.","definition_xrefs":["PMID:10197977","PMID:11900249"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-excision repair","termid":"GO:0006289"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00119":null,"SJAG_01480":null,"SJAG_01540":null,"SJAG_02116":null,"SJAG_03206":null,"SJAG_03454":null,"SJAG_04114":null,"SJAG_04353":null,"SJAG_04540":null,"SJAG_04778":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0006281"],"is_obsolete":false,"name":"transcription-coupled nucleotide-excision repair","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"TC-NER","type":"exact"},{"name":"TCR","type":"related"},{"name":"transcription-coupled NER","type":"exact"},{"name":"transcription-coupled repair","type":"exact"}],"termid":"GO:0006283","terms_by_termid":{"GO:0006283":null}}


id: GO:0050484
data:
  {"annotated_genes":["SJAG_01055"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[113237],"is_not":false,"summary":null,"term":"GO:0050484"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 5'-GMP + H2O = guanosine + phosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5'-nucleotidase activity","termid":"GO:0008253"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01055":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"GMP 5'-nucleotidase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN-7609","RHEA:27714"],"synonyms":[{"name":"GMP 5' nucleotidase activity","type":"exact"},{"name":"IMP-GMP specific 5'-nucleotidase activity","type":"related"}],"termid":"GO:0050484","terms_by_termid":{"GO:0050484":null}}


id: GO:0009723
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to hormone","termid":"GO:0009725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to ethylene","synonyms":[{"name":"response to ethene stimulus","type":"exact"},{"name":"response to ethylene stimulus","type":"exact"}],"termid":"GO:0009723"}


id: PBO:0030656
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mating_efficiency","termid":"PBO:0030656"}


id: FYPO:0005085
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at small nuclear RNA (snRNA) genes is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:21151114"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to chromatin at ncRNA gene","termid":"FYPO:0005083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001320","FYPO:0001312","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization to chromatin at snRNA gene","synonyms":[{"name":"normal protein localisation to chromatin at snRNA gene","type":"exact"},{"name":"normal protein localization to chromatin at snRNA gene during mitotic cell cycle","type":"related"},{"name":"normal protein localization to chromatin at snRNA gene during vegetative growth","type":"exact"}],"termid":"FYPO:0005085"}


id: PBO:0016519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi localized Arf binding gamma-adaptin ortholog Gga21","termid":"PBO:0016519"}


id: PBO:0038286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase feature property types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"average_residue_weight","termid":"PBO:0038286"}


id: PBO:0079690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin like 4A","termid":"PBO:0079690"}


id: PBO:0091656
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrolysis rate of PNPG to glucose is 20.3 (uM min-1 ml-2)","termid":"PBO:0091656"}


id: GO:0072289
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of a metanephric nephron tubule from unspecified parts. A metanephric nephron tubule is an epithelial tube that is part of a nephron in the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron tubule formation","termid":"GO:0072079"},{"relation_name":"is_a","term_name":"metanephric tubule formation","termid":"GO:0072174"},{"relation_name":"part_of","term_name":"metanephric nephron tubule morphogenesis","termid":"GO:0072282"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric nephron tubule formation","termid":"GO:0072289"}


id: PBO:0001219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingolipid biosynthesis protein (predicted)","termid":"PBO:0001219"}


id: PBO:0080251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 14 pseudogene","termid":"PBO:0080251"}


id: GO:1900242
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of synaptic vesicle endocytosis.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endocytosis","termid":"GO:0030100"},{"relation_name":"is_a","term_name":"regulation of synaptic vesicle recycling","termid":"GO:1903421"},{"relation_name":"regulates","term_name":"synaptic vesicle endocytosis","termid":"GO:0048488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of synaptic vesicle endocytosis","synonyms":[{"name":"regulation of synaptic vesicle retrieval","type":"related"}],"termid":"GO:1900242"}


id: GO:2000777
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any positive regulation of proteasomal ubiquitin-dependent protein catabolic process that is involved in a cellular response to hypoxia.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of proteasomal ubiquitin-dependent protein catabolic process","termid":"GO:0032436"},{"relation_name":"part_of","term_name":"cellular response to hypoxia","termid":"GO:0071456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0030163"},{"rel_name":"positively_regulates","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0008150","GO:0030163"],"is_obsolete":false,"name":"positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia","synonyms":[{"name":"positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxic stress","type":"exact"},{"name":"positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to lowered oxygen tension","type":"exact"}],"termid":"GO:2000777"}


id: GO:1902948
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of tau-protein kinase activity.","definition_xrefs":["GO_REF:0000059","GOC:sjp","PMID:22986780","GOC:TermGenie","PMID:15897157"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein kinase activity","termid":"GO:0006469"},{"relation_name":"is_a","term_name":"regulation of tau-protein kinase activity","termid":"GO:1902947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of tau-protein kinase activity","synonyms":[{"name":"down regulation of CDK5/p23","type":"related"},{"name":"down regulation of GSK","type":"related"},{"name":"down regulation of STK31","type":"related"},{"name":"down regulation of TPK","type":"related"},{"name":"down regulation of TPK I","type":"related"},{"name":"down regulation of TPK II","type":"related"},{"name":"down regulation of TTK","type":"related"},{"name":"down regulation of [Tau protein] kinase activity","type":"exact"},{"name":"down regulation of brain protein kinase PK40erk activity","type":"narrow"},{"name":"down regulation of cdk5/p20","type":"related"},{"name":"down regulation of glycogen synthase kinase-3beta activity","type":"exact"},{"name":"down regulation of protein tau kinase activity","type":"exact"},{"name":"down regulation of tau kinase activity","type":"exact"},{"name":"down regulation of tau protein kinase activity","type":"exact"},{"name":"down regulation of tau-protein kinase I activity","type":"narrow"},{"name":"down regulation of tau-protein kinase II activity","type":"narrow"},{"name":"down regulation of tau-protein kinase activity","type":"exact"},{"name":"down regulation of tau-tubulin kinase activity","type":"narrow"},{"name":"down-regulation of CDK5/p23","type":"related"},{"name":"down-regulation of GSK","type":"related"},{"name":"down-regulation of STK31","type":"related"},{"name":"down-regulation of TPK","type":"related"},{"name":"down-regulation of TPK I","type":"related"},{"name":"down-regulation of TPK II","type":"related"},{"name":"down-regulation of TTK","type":"related"},{"name":"down-regulation of [Tau protein] kinase activity","type":"exact"},{"name":"down-regulation of brain protein kinase PK40erk activity","type":"narrow"},{"name":"down-regulation of cdk5/p20","type":"related"},{"name":"down-regulation of glycogen synthase kinase-3beta activity","type":"exact"},{"name":"down-regulation of protein tau kinase activity","type":"exact"},{"name":"down-regulation of tau kinase activity","type":"exact"},{"name":"down-regulation of tau protein kinase activity","type":"exact"},{"name":"down-regulation of tau-protein kinase I activity","type":"narrow"},{"name":"down-regulation of tau-protein kinase II activity","type":"narrow"},{"name":"down-regulation of tau-protein kinase activity","type":"exact"},{"name":"down-regulation of tau-tubulin kinase activity","type":"narrow"},{"name":"downregulation of CDK5/p23","type":"related"},{"name":"downregulation of GSK","type":"related"},{"name":"downregulation of STK31","type":"related"},{"name":"downregulation of TPK","type":"related"},{"name":"downregulation of TPK I","type":"related"},{"name":"downregulation of TPK II","type":"related"},{"name":"downregulation of TTK","type":"related"},{"name":"downregulation of [Tau protein] kinase activity","type":"exact"},{"name":"downregulation of brain protein kinase PK40erk activity","type":"narrow"},{"name":"downregulation of cdk5/p20","type":"related"},{"name":"downregulation of glycogen synthase kinase-3beta activity","type":"exact"},{"name":"downregulation of protein tau kinase activity","type":"exact"},{"name":"downregulation of tau kinase activity","type":"exact"},{"name":"downregulation of tau protein kinase activity","type":"exact"},{"name":"downregulation of tau-protein kinase I activity","type":"narrow"},{"name":"downregulation of tau-protein kinase II activity","type":"narrow"},{"name":"downregulation of tau-protein kinase activity","type":"exact"},{"name":"downregulation of tau-tubulin kinase activity","type":"narrow"},{"name":"inhibition of CDK5/p23","type":"related"},{"name":"inhibition of GSK","type":"related"},{"name":"inhibition of STK31","type":"related"},{"name":"inhibition of TPK","type":"related"},{"name":"inhibition of TPK I","type":"related"},{"name":"inhibition of TPK II","type":"related"},{"name":"inhibition of TTK","type":"related"},{"name":"inhibition of [Tau protein] kinase activity","type":"narrow"},{"name":"inhibition of brain protein kinase PK40erk activity","type":"narrow"},{"name":"inhibition of cdk5/p20","type":"related"},{"name":"inhibition of glycogen synthase kinase-3beta activity","type":"narrow"},{"name":"inhibition of protein tau kinase activity","type":"narrow"},{"name":"inhibition of tau kinase activity","type":"narrow"},{"name":"inhibition of tau protein kinase activity","type":"narrow"},{"name":"inhibition of tau-protein kinase I activity","type":"narrow"},{"name":"inhibition of tau-protein kinase II activity","type":"narrow"},{"name":"inhibition of tau-protein kinase activity","type":"narrow"},{"name":"inhibition of tau-tubulin kinase activity","type":"narrow"},{"name":"negative regulation of CDK5/p23","type":"related"},{"name":"negative regulation of GSK","type":"related"},{"name":"negative regulation of STK31","type":"related"},{"name":"negative regulation of TPK","type":"related"},{"name":"negative regulation of TPK I","type":"related"},{"name":"negative regulation of TPK II","type":"related"},{"name":"negative regulation of TTK","type":"related"},{"name":"negative regulation of [Tau protein] kinase activity","type":"exact"},{"name":"negative regulation of brain protein kinase PK40erk activity","type":"narrow"},{"name":"negative regulation of cdk5/p20","type":"related"},{"name":"negative regulation of glycogen synthase kinase-3beta activity","type":"exact"},{"name":"negative regulation of protein tau kinase activity","type":"exact"},{"name":"negative regulation of tau kinase activity","type":"exact"},{"name":"negative regulation of tau protein kinase activity","type":"exact"},{"name":"negative regulation of tau-protein kinase I activity","type":"narrow"},{"name":"negative regulation of tau-protein kinase II activity","type":"narrow"},{"name":"negative regulation of tau-tubulin kinase activity","type":"narrow"}],"termid":"GO:1902948"}


id: PBO:0057894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3198-1","termid":"PBO:0057894"}


id: GO:0099703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The induction of synaptic vesicle release by any process that leads to a rise in intracellular calcium ion concentration at the presynapse. This is the first step in synaptic transmission.","definition_xrefs":["GOC:dos","ISBN:9780071120005"],"direct_ancestors":[{"relation_name":"is_a","term_name":"presynaptic modulation of chemical synaptic transmission","termid":"GO:0099171"},{"relation_name":"is_a","term_name":"positive regulation of presynaptic cytosolic calcium concentration","termid":"GO:0099533"},{"relation_name":"is_a","term_name":"positive regulation of synaptic vesicle exocytosis","termid":"GO:2000302"},{"relation_name":"part_of","term_name":"chemical synaptic transmission","termid":"GO:0007268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0023052","GO:0016192"],"is_obsolete":false,"name":"induction of synaptic vesicle exocytosis by positive regulation of presynaptic cytosolic calcium ion concentration","termid":"GO:0099703"}


id: GO:0038032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The signaling process in which G protein-coupled receptor signaling is brought to an end. For example, through the action of GTPase-activating proteins (GAPs) that act to accelerate hydrolysis of GTP to GDP on G-alpha proteins, thereby terminating the transduced signal.","definition_xrefs":["GOC:signaling","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"termination of signal transduction","termid":"GO:0023021"},{"relation_name":"is_a","term_name":"negative regulation of G protein-coupled receptor signaling pathway","termid":"GO:0045744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"termination of G protein-coupled receptor signaling pathway","synonyms":[{"name":"termination of G-protein coupled receptor signaling pathway","type":"exact"},{"name":"termination of G-protein coupled receptor signalling pathway","type":"exact"},{"name":"termination of GPCR signaling pathway","type":"exact"}],"termid":"GO:0038032"}


id: GO:0097240
data:
  {"annotated_genes":["SJAG_01263","SJAG_02737","SJAG_02698","SJAG_01745","SJAG_00727","SJAG_01777","SJAG_01538","SJAG_05196","SJAG_04142","SJAG_03449","SJAG_02837"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87446,85204,90713],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140698"},{"annotations":[85718,98914,113007,87447],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072766"},{"annotations":[92819,107292,78277],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990683"},{"annotations":[102024,85891],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070197"},{"annotations":[87453],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140464"}]},"cv_name":"biological_process","definition":"The process in which chromatin is anchored to the nuclear envelope.","definition_xrefs":["PMID:31635174","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"is_a","term_name":"chromosome localization","termid":"GO:0050000"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00727":null,"SJAG_01263":null,"SJAG_01538":null,"SJAG_01745":null,"SJAG_01777":null,"SJAG_02698":null,"SJAG_02737":null,"SJAG_02837":null,"SJAG_03449":null,"SJAG_04142":null,"SJAG_05196":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0051179"],"is_obsolete":false,"name":"chromosome attachment to the nuclear envelope","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"attachment of chromatin to nuclear envelope","type":"related"}],"termid":"GO:0097240","terms_by_termid":{"GO:0070197":null,"GO:0072766":null,"GO:0140464":null,"GO:0140698":null,"GO:1990683":null}}


id: GO:0002833
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of a response to biotic stimulus.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to biotic stimulus","termid":"GO:0002831"},{"relation_name":"is_a","term_name":"positive regulation of response to stimulus","termid":"GO:0048584"},{"relation_name":"positively_regulates","term_name":"response to biotic stimulus","termid":"GO:0009607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to biotic stimulus","synonyms":[{"name":"activation of response to biotic stimulus","type":"narrow"},{"name":"stimulation of response to biotic stimulus","type":"narrow"},{"name":"up regulation of response to biotic stimulus","type":"exact"},{"name":"up-regulation of response to biotic stimulus","type":"exact"},{"name":"upregulation of response to biotic stimulus","type":"exact"}],"termid":"GO:0002833"}


id: SO:0001216
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An intron that spliced via endonucleolytic cleavage and ligation rather than transesterification.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intron","termid":"SO:0000188"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endonuclease_spliced_intron","synonyms":[{"name":"endonuclease spliced intron","type":"exact"}],"termid":"SO:0001216"}


id: PBO:0084073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase with similarity to translation release factors; together with binding partner Dom34p, facilitates ribosomal subunit dissociation and peptidyl-tRNA release when translation is stalled, particularly in 3' UTRs; genetically implicated in mRNA no-go decay; HBS1 has a paralog, SKI7, that arose from the whole genome duplication","termid":"PBO:0084073"}


id: PBO:0025418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fluoride channel Fex1","termid":"PBO:0025418"}


id: PBO:0030373
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_RNA_level_during_cellular_response_to_thiamine_starvation","termid":"PBO:0030373"}


id: GO:0051138
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of natural killer T cell differentiation.","definition_xrefs":["ISBN:0781735149","PMID:12154375","PMID:9133426"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of alpha-beta T cell differentiation","termid":"GO:0046638"},{"relation_name":"is_a","term_name":"regulation of NK T cell differentiation","termid":"GO:0051136"},{"relation_name":"positively_regulates","term_name":"NK T cell differentiation","termid":"GO:0001865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"positive regulation of NK T cell differentiation","synonyms":[{"name":"activation of NK T cell differentiation","type":"narrow"},{"name":"positive regulation of NK T cell development","type":"related"},{"name":"positive regulation of NK T lymphocyte differentiation","type":"exact"},{"name":"positive regulation of NK T-cell differentiation","type":"exact"},{"name":"positive regulation of NK T-lymphocyte differentiation","type":"exact"},{"name":"positive regulation of NKT cell differentiation","type":"exact"},{"name":"positive regulation of NT cell differentiation","type":"exact"},{"name":"positive regulation of natural T cell differentiation","type":"exact"},{"name":"positive regulation of natural killer T cell differentiation","type":"exact"},{"name":"stimulation of NK T cell differentiation","type":"narrow"},{"name":"up regulation of NK T cell differentiation","type":"exact"},{"name":"up-regulation of NK T cell differentiation","type":"exact"},{"name":"upregulation of NK T cell differentiation","type":"exact"}],"termid":"GO:0051138"}


id: GO:0075232
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates, maintains or increases the frequency, rate or extent of spore movement on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of spore movement on or near host (obsolete GO:0075232)","termid":"GO:0075232"}


id: PR:Q9P6R9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A pre-mRNA-splicing factor CWC22 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DAN","PANTHER:PTHR18034:SF3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-splicing factor cwf22 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC13E7.01","secondary_identifiers":["UniProtKB:Q9P6R9"],"synonyms":[{"name":"SPBC13E7.01","type":"related"},{"name":"Spom972h-CWC22","type":"exact"},{"name":"complexed with cdc5 protein 22 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P6R9"}


id: GO:0047857
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5,6-dihydrouracil + O2 = H2O2 + uracil.","definition_xrefs":["EC:1.3.3.7","RHEA:12384"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor","termid":"GO:0016634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"dihydrouracil oxidase activity","secondary_identifiers":["KEGG_REACTION:R00975","MetaCyc:DIHYDROURACIL-OXIDASE-RXN"],"synonyms":[{"name":"5,6-dihydrouracil:oxygen oxidoreductase activity","type":"related"}],"termid":"GO:0047857"}


id: PBO:0051054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy diversity 2/OR15-2A (non-functional)","termid":"PBO:0051054"}


id: PBO:0111439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar transporter chaperone (VTC) complex subunit Vtc4","termid":"PBO:0111439"}


id: PR:000027503
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mitogen-activated protein kinase sty1 phosphorylated 1 in Schizosaccharomyces pombe. Phosphorylated on TxY motif by MAPK kinase (Wis1). Example: UniProtKB:Q09892-1, Thr-171, MOD:00047|Tyr-173, MOD:00048.","definition_xrefs":["PMID:9251044","PMID:7501024","PomBase:MAH","PMID:20729203"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitogen-activated protein kinase HOG1","termid":"PR:000027499"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sty1/Phos(T171,T173)","pombase_gene_id":"SPAC24B11.06c","synonyms":[{"name":"PomBase_original_PRO_term_name: mitogen-activated protein kinase sty1 phosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-HOG1/Phos:1","type":"exact"},{"name":"active PHH1","type":"exact"},{"name":"active spc1","type":"exact"},{"name":"active sty1","type":"exact"},{"name":"sty1/Phos(T171,T173)","type":"exact"}],"termid":"PR:000027503"}


id: GO:0006640
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of monoacylglycerol, any ester of glycerol in which any one of its hydroxyl groups has been acylated with a fatty acid, the other being non-esterified.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoacylglycerol metabolic process","termid":"GO:0046462"},{"relation_name":"is_a","term_name":"acylglycerol biosynthetic process","termid":"GO:0046463"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"monoacylglycerol biosynthetic process","synonyms":[{"name":"monoacylglycerol anabolism","type":"exact"},{"name":"monoacylglycerol biosynthesis","type":"exact"},{"name":"monoacylglycerol formation","type":"exact"},{"name":"monoacylglycerol synthesis","type":"exact"},{"name":"monoglyceride biosynthesis","type":"exact"},{"name":"monoglyceride biosynthetic process","type":"exact"}],"termid":"GO:0006640"}


id: PATO:0000660
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000660 angle_quantity (obsolete PATO:0000660)","termid":"PATO:0000660"}


id: PBO:0046646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group W member 27","termid":"PBO:0046646"}


id: GO:0060678
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a ureteric bud bifurcates at its end.","definition_xrefs":["PMID:16916378","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dichotomous subdivision of an epithelial terminal unit","termid":"GO:0060600"},{"relation_name":"part_of","term_name":"branching involved in ureteric bud morphogenesis","termid":"GO:0001658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dichotomous subdivision of terminal units involved in ureteric bud branching","synonyms":[{"name":"bifid subdivision of terminal units involved in ureteric bud branching","type":"exact"}],"termid":"GO:0060678"}


id: PBO:0051067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy diversity 4/OR15-4A (non-functional)","termid":"PBO:0051067"}


id: PBO:0069963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1257, pseudogene","termid":"PBO:0069963"}


id: PATO:0000496
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000496 phase value (obsolete PATO:0000496)","termid":"PATO:0000496"}


id: GO:0003957
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADPH + NAD+ = NADP+ + NADH.","definition_xrefs":["RHEA:11692"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on NAD(P)H as acceptor","termid":"GO:0016652"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"NAD(P)+ transhydrogenase (Si-specific) activity","secondary_identifiers":["KEGG_REACTION:R00112","MetaCyc:PYRNUTRANSHYDROGEN-RXN","EC:1.6.1.1"],"synonyms":[{"name":"H+-thase","type":"broad"},{"name":"NAD transhydrogenase","type":"broad"},{"name":"NAD(P) transhydrogenase (B-specific) activity","type":"exact"},{"name":"NAD(P)+ transhydrogenase (B-specific) activity","type":"exact"},{"name":"NADH transhydrogenase","type":"broad"},{"name":"NADH-NADP-transhydrogenase","type":"broad"},{"name":"NADPH-NAD oxidoreductase","type":"broad"},{"name":"NADPH-NAD transhydrogenase","type":"broad"},{"name":"NADPH:NAD+ oxidoreductase (B-specific)","type":"related"},{"name":"NADPH:NAD+ transhydrogenase","type":"broad"},{"name":"nicotinamide adenine dinucleotide (phosphate) transhydrogenase","type":"broad"},{"name":"nicotinamide nucleotide transhydrogenase activity","type":"broad"},{"name":"non-energy-linked transhydrogenase activity","type":"related"},{"name":"pyridine nucleotide transferase","type":"broad"},{"name":"pyridine nucleotide transhydrogenase activity","type":"broad"}],"termid":"GO:0003957"}


id: GO:0120508
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex capable of catalyzing the reaction of GTP and mannose-1-phosphate to form GDP-mannose. The complex is a homodimer in most bacteria and a heterodimer in most eukaryotes. In humans, it is composed of a catalytic beta subunit (GMPPB) and a regulatory alpha subunit (GMPPA).","definition_xrefs":["GOC:sjm","PMID:33986552"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex, transferring phosphorus-containing groups","termid":"GO:0061695"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"GDP-mannose pyrophosphorylase complex","synonyms":[{"name":"GMPPA-GMPPB complex","type":"exact"}],"termid":"GO:0120508"}


id: FYPO:0006651
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which an ATP-dependent protein-DNA complex displacement activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal ATP-dependent protein-DNA complex displacement activity","termid":"FYPO:0006650"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0001985","FYPO:0000654","FYPO:0000661"],"is_obsolete":false,"name":"abolished ATP-dependent protein-DNA complex displacement activity","synonyms":[{"name":"ATP-dependent protein-DNA complex displacement activity abolished","type":"exact"}],"termid":"FYPO:0006651"}


id: GO:0004491
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-methyl-3-oxopropanoate + CoA + NAD+ = propanoyl-CoA + CO2 + NADH + H+. Can also use malonate (3-oxopropanoate) as a substrate. The reaction occurs in two steps with the decarboxylation process preceding CoA-binding. Bicarbonate rather than CO2 is released as a final product.","definition_xrefs":["EC:1.2.1.27","PMID:2768248"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"methylmalonate-semialdehyde dehydrogenase (acylating, NAD) activity","secondary_identifiers":["Reactome:R-HSA-70893","MetaCyc:1.2.1.27-RXN"],"synonyms":[{"name":"MMSA dehydrogenase activity","type":"related"},{"name":"MSDH activity","type":"related"},{"name":"methylmalonate-semialdehyde dehydrogenase (acylating) activity","type":"related"}],"termid":"GO:0004491"}


id: PBO:0064504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II, I and III subunit E","termid":"PBO:0064504"}


id: PBO:0066849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 149","termid":"PBO:0066849"}


id: PBO:0049248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRPEL2 pseudogene 2","termid":"PBO:0049248"}


id: SO:0001953
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of DNA sequence formed from the ligation of two sticky ends where the palindrome is broken and no longer comprises the recognition site and thus cannot be re-cut by the restriction enzymes used to create the sticky ends.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"restriction_enzyme_region","termid":"SO:0001954"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"restriction_enzyme_assembly_scar","termid":"SO:0001953"}


id: PBO:0032762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IMP 5'-nucleotidase Isn1 (predicted)","termid":"PBO:0032762"}


id: PBO:0029184
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_trehalose_6-phosphate_level_during_heat_shock","termid":"PBO:0029184"}


id: PBO:0046358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endosulfine alpha","termid":"PBO:0046358"}


id: FYPO:0002241
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is shaped in the form of a spheroid, has one or more septa, and has a normal volume.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal volume spheroid vegetative cell","termid":"FYPO:0000946"},{"relation_name":"is_a","term_name":"septated spheroid vegetative cell","termid":"FYPO:0005149"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0001320","FYPO:0001312","FYPO:0000257","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"normal volume septated spheroid vegetative cell","synonyms":[{"name":"normal volume septated rounded vegetative cell","type":"exact"}],"termid":"FYPO:0002241"}


id: PBO:0078390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Phe (anticodon GAA) 1-5","termid":"PBO:0078390"}


id: GO:0030131
data:
  {"annotated_genes":["SJAG_00379","SJAG_01809","SJAG_04931","SJAG_01167","SJAG_02805","SJAG_00104","SJAG_04609","SJAG_04565","SJAG_00800"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[107569],"is_not":false,"summary":null,"term":"GO:0030131"},{"annotations":[109075,108857,97223,114915],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030121"},{"annotations":[107725,104411,107666,92367],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030122"}]},"cv_name":"cellular_component","definition":"A membrane coat adaptor complex that links clathrin to a membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"AP-type membrane coat adaptor complex","termid":"GO:0030119"},{"relation_name":"part_of","term_name":"clathrin coat","termid":"GO:0030118"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00104":null,"SJAG_00379":null,"SJAG_00800":null,"SJAG_01167":null,"SJAG_01809":null,"SJAG_02805":null,"SJAG_04565":null,"SJAG_04609":null,"SJAG_04931":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"clathrin adaptor complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0030131","terms_by_termid":{"GO:0030121":null,"GO:0030122":null,"GO:0030131":null}}


id: PBO:0050821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyccin PI4KA lipid kinase complex subunit 1","termid":"PBO:0050821"}


id: FYPO:0004713
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more amino acid biosynthesis RNAs measured in a cell is lower than normal (i.e. lower than observed in wild-type cells). Amino acid biosynthesis RNAs are transcribed from genes whose products are involved in amino acid biosynthetic processes.","definition_xrefs":["PomBase:mah","PMID:18203864"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"decreased level of amino acid biosynthesis gene mRNA during vegetative growth","synonyms":[{"name":"decreased amino acid biosynthesis gene mRNA accumulation during vegetative growth","type":"related"},{"name":"decreased level of amino acid biosynthesis gene RNA during vegetative growth","type":"exact"},{"name":"decreased level of amino acid biosynthesis gene mRNA during mitotic cell cycle","type":"related"},{"name":"decreased level of amino acid biosynthesis gene transcripts during vegetative growth","type":"exact"},{"name":"reduced level of amino acid biosynthesis gene mRNA during vegetative growth","type":"exact"}],"termid":"FYPO:0004713"}


id: GO:0018639
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reactions: toluene + 1/2 O2 = benzyl alcohol, and xylene + 1/2 O2 = methylbenzyl alcohol.","definition_xrefs":["UM-BBD_enzymeID:e0172"],"gene_count":0,"genotype_count":0,"name":"obsolete xylene monooxygenase activity (obsolete GO:0018639)","termid":"GO:0018639"}


id: PBO:0032738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome export GTPase Nog2 (predicted)","termid":"PBO:0032738"}


id: PATO:0001346
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A S. pombe mating type determined by the mat1-Pc and mat1-Pi on the mat1 locus.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe mating type","termid":"PATO:0001343"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"h plus","synonyms":[{"name":"P","type":"exact"},{"name":"h+","type":"exact"}],"termid":"PATO:0001346"}


id: GO:0031354
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the plastid outer membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:mah","GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of plastid outer membrane (obsolete GO:0031354)","synonyms":[{"name":"intrinsic to plastid outer membrane","type":"narrow"}],"termid":"GO:0031354"}


id: PBO:0052017
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"jumonji domain containing 7","termid":"PBO:0052017"}


id: PBO:0078913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (anticodon TTG) 3-2","termid":"PBO:0078913"}


id: MOD:01673
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with an N-acetylaminohexose group through a glycosidic bond.","definition_xrefs":["Unimod:43"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetylhexosaminylated residue","termid":"MOD:00436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"N-acetylaminohexosylated residue","synonyms":[{"name":"HexNAc","type":"related"},{"name":"HexNAcRes","type":"exact"},{"name":"N-Acetylhexosamine","type":"related"}],"termid":"MOD:01673"}


id: GO:0031348
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of a defense response.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of defense response","termid":"GO:0031347"},{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"negatively_regulates","term_name":"defense response","termid":"GO:0006952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of defense response","synonyms":[{"name":"down regulation of defense response","type":"exact"},{"name":"down-regulation of defense response","type":"exact"},{"name":"downregulation of defense response","type":"exact"},{"name":"inhibition of defense response","type":"narrow"}],"termid":"GO:0031348"}


id: PBO:0073535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain containing kinase binding protein 1","termid":"PBO:0073535"}


id: GO:0051568
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by addition of one or more methyl groups to lysine at position 4 of the histone.","definition_xrefs":["GOC:pr","GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K4 methylation (obsolete GO:0051568)","synonyms":[{"name":"histone H3 K4 methylation","type":"exact"},{"name":"histone H3K4me","type":"exact"},{"name":"histone lysine H3 K4 methylation","type":"exact"}],"termid":"GO:0051568"}


id: PBO:0036440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hrd1 ubiquitin ligase complex (derlin) Der1 (predicted)","termid":"PBO:0036440"}


id: GO:0004214
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the release of an N-terminal dipeptide, Xaa-Xbb from Xaa-Xbb-Xcc, except when Xaa is Arg or Lys, or Xbb or Xcc is Pro.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete dipeptidyl-peptidase I activity (obsolete GO:0004214)","synonyms":[{"name":"dipeptidyl-peptidase I activity","type":"exact"}],"termid":"GO:0004214"}


id: PBO:0004162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule affinity-regulating kinase Kin1","termid":"PBO:0004162"}


id: SO:1001261
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The sequence of a mature mRNA transcript, modified before translation or during translation, usually by special cis-acting signals.","direct_ancestors":[{"relation_name":"has_quality","term_name":"recoded","termid":"SO:0000881"},{"relation_name":"is_a","term_name":"mRNA","termid":"SO:0000234"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recoded_mRNA","synonyms":[{"name":"recoded mRNA","type":"exact"}],"termid":"SO:1001261"}


id: PBO:0113264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphoinositide binding protein; required for vesicle formation in autophagy and the cytoplasm-to-vacuole targeting (CVT) pathway; binds PtdIns(3,5)P2, PI3P and PI4P; WD-40 repeat-containing protein and PROPPIN family member; relocalizes from the vacuole to cytoplasm upon replication stress; forms higher order helical assemblies; mammalian homologs include: WIPI1, WIPI2, WIPI3 and WDR45; human WDR45 mutations cause static encephalopathy of childhood with neurodegeneration in adulthood (SENDA)","termid":"PBO:0113264"}


id: PBO:0003955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetolactate synthase regulatory unit (predicted)","termid":"PBO:0003955"}


id: PBO:0031521
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_DNA-7-methylguanine_glycosylase_activity","termid":"PBO:0031521"}


id: PBO:0056561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MCM8 antisense RNA 1","termid":"PBO:0056561"}


id: PBO:0082294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Arginosuccinate synthetase; catalyzes the formation of L-argininosuccinate from citrulline and L-aspartate in the arginine biosynthesis pathway; potential Cdc28p substrate","termid":"PBO:0082294"}


id: PBO:0044448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 4 subfamily F member 26, pseudogene","termid":"PBO:0044448"}


id: GO:0070804
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of metula development, a process that leads to the formation of metulae. Metulae are elongated mononucleate cells that bud from the surface of the conidiophore tip.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell development","termid":"GO:0010720"},{"relation_name":"is_a","term_name":"regulation of metula development","termid":"GO:0070802"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"metula development","termid":"GO:0070789"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of metula development","termid":"GO:0070804"}


id: PR:P54069
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An alpha/beta hydrolase domain-containing protein 13 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02874"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein bem46 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC32H8.03","secondary_identifiers":["UniProtKB:P54069"],"synonyms":[{"name":"Spom972h-ABHD13","type":"exact"}],"termid":"PR:P54069"}


id: GO:0009406
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete virulence (obsolete GO:0009406)","synonyms":[{"name":"virulence","type":"exact"}],"termid":"GO:0009406"}


id: FYPO:0001192
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which vegetative cell growth is normal (i.e. indistinguishable from wild type) in a medium containing one or more enzymes that degrades cell wall polysaccharides.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0002060","FYPO:0000257","FYPO:0002058","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"normal growth on cell wall-degrading enzymes","secondary_identifiers":["FYPO:0001193"],"synonyms":[{"name":"normal cell population growth in presence of cell wall-degrading enzymes","type":"exact"},{"name":"normal cell population growth on Lyticase","type":"narrow"},{"name":"normal cell population growth on Novozyme 234","type":"narrow"},{"name":"normal cell population growth on Zymolyase","type":"narrow"},{"name":"normal cell population growth on beta-1,3-glucan laminaripentaohydrolase","type":"narrow"},{"name":"normal cell population growth on cell wall-degrading enzymes","type":"exact"},{"name":"normal cell population growth on lysing enzymes from Trichoderma harzianum","type":"narrow"},{"name":"normal cellular response to cell wall-degrading enzymes","type":"related"},{"name":"normal vegetative cell population growth on cell wall-degrading enzymes","type":"exact"}],"termid":"FYPO:0001192"}


id: GO:0061609
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-D-fructose-1-phosphate = D-glyceraldehyde + dihydroxyacetone phosphate.","definition_xrefs":["GOC:glycolysis","RHEA:30851","ISBN:0201090910","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"fructose-1-phosphate aldolase activity","secondary_identifiers":["Reactome:R-HSA-70342","MetaCyc:RXN-8631","Reactome:R-HSA-5656438"],"termid":"GO:0061609"}


id: PBO:0085161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleotide excision repair (NER) protein; binds damaged DNA during NER; binds DNA in an ATP-dependent manner (with Rad7p) during NER; required for NER of non-transcribed chromatin; subunit of Nucleotide Excision Repair Factor 4 (NEF4) and the Elongin-Cullin-Socs (ECS) ligase complex","termid":"PBO:0085161"}


id: PBO:0050461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hook microtubule tethering protein 2","termid":"PBO:0050461"}


id: PBO:0073470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sideroflexin 5","termid":"PBO:0073470"}


id: FYECO:0000436
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which cyanide-p-trifluoromethoxyphenylhydrazone was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ FCCP","secondary_identifiers":["PMID:37590302"],"synonyms":[{"name":"carbonyl cyanide m-chlorophenyl hydrazone","type":"exact"}],"termid":"FYECO:0000436"}


id: GO:0061158
data:
  {"annotated_genes":["SJAG_04825"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114351],"is_not":false,"summary":null,"term":"GO:0061158"}]},"cv_name":"biological_process","definition":"An mRNA destabilization process in which one or more RNA-binding proteins associate with the 3'-untranslated region (UTR) of an mRNA.","definition_xrefs":["GOC:dph","GOC:jh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA destabilization","termid":"GO:0061157"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04825":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0016071","GO:0010467"],"is_obsolete":false,"name":"3'-UTR-mediated mRNA destabilization","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0061158","terms_by_termid":{"GO:0061158":null}}


id: PBO:0043635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPI coat complex subunit gamma 2","termid":"PBO:0043635"}


id: GO:0031493
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a histone that is assembled into a nucleosome.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete nucleosomal histone binding (obsolete GO:0031493)","termid":"GO:0031493"}


id: GO:0062086
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of vein smooth muscle contraction.","definition_xrefs":["PMID:8428203"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vascular associated smooth muscle contraction","termid":"GO:0003056"},{"relation_name":"regulates","term_name":"vein smooth muscle contraction","termid":"GO:0014826"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of vein smooth muscle contraction","termid":"GO:0062086"}


id: PR:Q09847
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nup146 gene.","definition_xrefs":["UniProtKB:Q09847","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin nup146 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23D3.06c","synonyms":[{"name":"Spom972h-nup146","type":"exact"},{"name":"nuclear pore protein nup146 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09847"}


id: PBO:0069204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 458, pseudogene","termid":"PBO:0069204"}


id: PBO:0041142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic transcription factor 3 like 4 pseudogene 1","termid":"PBO:0041142"}


id: PBO:0080056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 27 X-linked","termid":"PBO:0080056"}


id: PBO:0049788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA complex group 23","termid":"PBO:0049788"}


id: PBO:0000038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase interaction types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interacts_physically","termid":"PBO:0000038"}


id: GO:1902974
data:
  {"annotated_genes":["SJAG_03720","SJAG_03048","SJAG_03438","SJAG_00364"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98473,112305,102694,85190],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1904514"}]},"cv_name":"biological_process","definition":"Any DNA replication initiation involved in meiotic cell cycle DNA replication.","definition_xrefs":["GOC:TermGenie","GO_REF:0000060","PMID:10888871"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear cell cycle DNA replication initiation","termid":"GO:1902315"},{"relation_name":"part_of","term_name":"meiotic cell cycle","termid":"GO:0051321"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_03048":null,"SJAG_03438":null,"SJAG_03720":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0007049","GO:0006259","GO:0008150","GO:0006260"],"is_obsolete":false,"name":"meiotic DNA replication initiation","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0072691"],"synonyms":[{"name":"DNA replication initiation involved in meiotic DNA replication","type":"exact"},{"name":"DNA replication initiation involved in meiotic cell cycle DNA replication","type":"exact"},{"name":"initiation of meiotic DNA synthesis","type":"related"},{"name":"initiation of premeiotic DNA replication","type":"related"},{"name":"initiation of premeiotic DNA synthesis","type":"related"},{"name":"premeiotic DNA replication initiation","type":"related"}],"termid":"GO:1902974","terms_by_termid":{"GO:1904514":null}}


id: PATO:0000718
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A viability quality inhering in a population by virtue of the bearer's long term survival inability.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viability","termid":"PATO:0000169"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lethal (sensu genetics)","termid":"PATO:0000718"}


id: PBO:0049766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA complex group 4 pseudogene 3","termid":"PBO:0049766"}


id: FYPO:0005509
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which meiotic sister chromatid segregation is abnormal. Meiotic sister chromatid segregation is the process in which sister chromatids are organized and then physically separated and randomly apportioned to two sets during the second division of the meiotic cell cycle.","definition_xrefs":["GO:0045144","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic chromosome segregation","termid":"FYPO:0000151"},{"relation_name":"is_a","term_name":"abnormal meiosis II","termid":"FYPO:0006526"},{"relation_name":"is_a","term_name":"abnormal meiotic chromosome organization","termid":"FYPO:0006759"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0000002","FYPO:0000641","FYPO:0001985"],"is_obsolete":false,"name":"abnormal meiotic sister chromatid segregation","synonyms":[{"name":"abnormal sister chromatid segregation during meiosis II","type":"exact"},{"name":"chromosome missegregation during meiosis II","type":"related"},{"name":"meiotic chromosome missegregation","type":"related"},{"name":"meiotic sister chromatid missegregation","type":"related"}],"termid":"FYPO:0005509"}


id: PBO:0078770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (anticodon GTT) 2-2","termid":"PBO:0078770"}


id: PBO:0108838
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not functionally complement S. japonicus mid1","termid":"PBO:0108838"}


id: PBO:0056505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAP3K12 binding inhibitory protein 1","termid":"PBO:0056505"}


id: GO:0031430
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The midline of aligned thick filaments in a sarcomere; location of specific proteins that link thick filaments. Depending on muscle type the M band consists of different numbers of M lines.","definition_xrefs":["ISBN:0198506732","ISBN:0815316194","GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"A band","termid":"GO:0031672"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"M band","secondary_identifiers":["Wikipedia:Sarcomere#bands"],"synonyms":[{"name":"M disc","type":"exact"},{"name":"M line","type":"narrow"},{"name":"mesophragma","type":"exact"},{"name":"midline","type":"broad"}],"termid":"GO:0031430"}


id: PATO:0002022
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a minute projection (villus).","definition_xrefs":["PATOC:PEM"],"direct_ancestors":[{"relation_name":"is_a","term_name":"concave 3-D shape","termid":"PATO:0002008"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"villiform","termid":"PATO:0002022"}


id: PBO:0071494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32 pseudogene 35","termid":"PBO:0071494"}


id: PBO:0056283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannosidase beta like","termid":"PBO:0056283"}


id: PBO:0087279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Shmoo tip protein, substrate of Hub1p ubiquitin-like protein; mutants are defective for mating projection formation, thereby implicating Hbt1p in polarized cell morphogenesis; HBT1 has a paralog, YNL195C, that arose from the whole genome duplication","termid":"PBO:0087279"}


id: PBO:0039154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylate kinase 4 pseudogene 1","termid":"PBO:0039154"}


id: PBO:0002885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Imp3 (predicted)","termid":"PBO:0002885"}


id: PBO:0000792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved eukaryotic ER membrane protein","termid":"PBO:0000792"}


id: PBO:0086781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; SWAT-GFP and seamless GFP fusion proteins localize to the endoplasmic reticulum and mCherry fusion protein localizes to the vacuole","termid":"PBO:0086781"}


id: GO:0018998
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete metaxin (obsolete GO:0018998)","synonyms":[{"name":"metaxin","type":"exact"}],"termid":"GO:0018998"}


id: PBO:0043101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbohydrate sulfotransferase 13","termid":"PBO:0043101"}


id: PBO:0090375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ergothioneine biosynthesis methyltransferase Egt2","termid":"PBO:0090375"}


id: GO:0033555
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to stress","termid":"GO:0006950"},{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"multicellular organismal response to stress","termid":"GO:0033555"}


id: PBO:0078408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gly (anticodon CCC) 2-2","termid":"PBO:0078408"}


id: PBO:0050313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 15","termid":"PBO:0050313"}


id: GO:0097458
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of a neuron, the basic cellular unit of nervous tissue. A typical neuron consists of a cell body (often called the soma), an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system.","definition_xrefs":["GOC:pr","Wikipedia:Neuron"],"gene_count":0,"genotype_count":0,"name":"obsolete neuron part (obsolete GO:0097458)","termid":"GO:0097458"}


id: PBO:0065070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRICKLE1 pseudogene 1","termid":"PBO:0065070"}


id: GO:0003131
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that mediates the transfer of information from mesodermal cells to endodermal cells.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling","termid":"GO:0007267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"mesodermal-endodermal cell signaling","synonyms":[{"name":"mesodermal-endodermal cell signalling","type":"exact"}],"termid":"GO:0003131"}


id: PBO:0056064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine zipper protein 4 pseudogene 1","termid":"PBO:0056064"}


id: PBO:0044366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 56","termid":"PBO:0044366"}


id: PBO:0087401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Stress-responsive transcriptional activator; activated in stochastic pulses of nuclear localization in response to various stress conditions; binds DNA at stress response elements of responsive genes; light sensing pathway component that accumulates in the nucleus in response to blue light; relative distribution to nucleus increases upon DNA replication stress","termid":"PBO:0087401"}


id: PBO:0063900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class W","termid":"PBO:0063900"}


id: GO:0036486
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of trunk neural crest cells from the neural tube, travelling ventrally through the anterior half of each sclerotome. Trunk neural crest cells that remain in the sclerotome form the dorsal root ganglia containing the sensory neurons. Trunk neural crest cells that continue more ventrally form the sympathetic ganglia, the adrenal medulla, and the nerve clusters surrounding the aorta.","definition_xrefs":["GOC:bf","GOC:PARL","GOC:mat","PMID:16319111","PMID:19386662"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trunk neural crest cell migration","termid":"GO:0036484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ventral trunk neural crest cell migration","synonyms":[{"name":"trunk NCC migration through anterior sclerotome","type":"exact"},{"name":"trunk NCC migration within somite","type":"exact"},{"name":"ventral trunk NCC migration","type":"exact"}],"termid":"GO:0036486"}


id: SO:0000970
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000970 theta_replication (obsolete SO:0000970)","synonyms":[{"name":"theta replication","type":"exact"}],"termid":"SO:0000970"}


id: PBO:0043721
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6C","termid":"PBO:0043721"}


id: PBO:0090957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-binding protein associated factor Taf2","termid":"PBO:0090957"}


id: PBO:0087693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the oligosaccharyltransferase complex of the ER lumen; complex catalyzes asparagine-linked glycosylation of newly synthesized proteins; similar to and partially functionally redundant with Ost3p","termid":"PBO:0087693"}


id: PBO:0039956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARL2-SNX15 readthrough (NMD candidate)","termid":"PBO:0039956"}


id: PBO:0049588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 clustered histone 6","termid":"PBO:0049588"}


id: GO:0018700
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-chloro-N-isopropylacetanilide + H+ + 2 e- = Cl- + N-isopropylacetanilide.","definition_xrefs":["UM-BBD_reactionID:r0719"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-chloro-N-isopropylacetanilide reductive dehalogenase activity (obsolete GO:0018700)","termid":"GO:0018700"}


id: GO:0032754
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-5 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-5 production","termid":"GO:0032674"},{"relation_name":"positively_regulates","term_name":"interleukin-5 production","termid":"GO:0032634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of interleukin-5 production","secondary_identifiers":["GO:0045407","GO:2000664"],"synonyms":[{"name":"activation of interleukin-5 production","type":"narrow"},{"name":"positive regulation of IL-5 production","type":"exact"},{"name":"positive regulation of interleukin-5 biosynthetic process","type":"narrow"},{"name":"positive regulation of interleukin-5 secretion","type":"narrow"},{"name":"stimulation of interleukin-5 production","type":"narrow"},{"name":"up regulation of interleukin-5 production","type":"exact"},{"name":"up-regulation of interleukin-5 production","type":"exact"},{"name":"upregulation of interleukin-5 production","type":"exact"}],"termid":"GO:0032754"}


id: PBO:0005093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAZ domain","termid":"PBO:0005093"}


id: PBO:0059601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 13","termid":"PBO:0059601"}


id: GO:0007475
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The coming together of the dorsal and ventral surfaces of the imaginal disc-derived wing during the conversion of a folded single layered wing disc to a flat bilayered wing.","definition_xrefs":["GOC:bf","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-embryonic animal morphogenesis","termid":"GO:0009886"},{"relation_name":"part_of","term_name":"imaginal disc-derived wing margin morphogenesis","termid":"GO:0008587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"apposition of dorsal and ventral imaginal disc-derived wing surfaces","synonyms":[{"name":"apposition of dorsal and ventral wing surfaces","type":"exact"}],"termid":"GO:0007475"}


id: GO:0033737
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-pyrroline + NAD+ + 2 H2O = 4-aminobutanoate + NADH + 2 H+.","definition_xrefs":["MetaCyc:1.5.1.35-RXN"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-pyrroline dehydrogenase activity (obsolete GO:0033737)","synonyms":[{"name":"1-pyrroline:NAD+ oxidoreductase activity","type":"related"},{"name":"ABALDH","type":"related"},{"name":"YdcW","type":"related"},{"name":"gamma-aminobutyraldehyde dehydrogenase activity","type":"related"}],"termid":"GO:0033737"}


id: PBO:0030210
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_protamine_sulfate","termid":"PBO:0030210"}


id: _global:immediately_preceded_by
data:
  {"annotation_feature_type":"gene","cv_name":"external","direct_ancestors":[{"relation_name":"is_a","term_name":"preceded_by","termid":"_global:preceded_by"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immediately_preceded_by","secondary_identifiers":["RO:0002087"],"termid":"_global:immediately_preceded_by"}


id: GO:1902568
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of eosinophil activation.","definition_xrefs":["GOC:TermGenie","PMID:16254138"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte activation","termid":"GO:0002696"},{"relation_name":"is_a","term_name":"regulation of eosinophil activation","termid":"GO:1902566"},{"relation_name":"positively_regulates","term_name":"eosinophil activation","termid":"GO:0043307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of eosinophil activation","synonyms":[{"name":"activation of eosinophil activation","type":"narrow"},{"name":"up regulation of eosinophil activation","type":"exact"},{"name":"up-regulation of eosinophil activation","type":"exact"},{"name":"upregulation of eosinophil activation","type":"exact"}],"termid":"GO:1902568"}


id: PBO:0082394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Beta subunit of cytoplasmic phenylalanyl-tRNA synthetase; forms a tetramer with Frs2p to generate active enzyme; able to hydrolyze mis-aminoacylated tRNA-Phe, which could contribute to translational quality control","termid":"PBO:0082394"}


id: PBO:0068280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease H1 pseudogene 1","termid":"PBO:0068280"}


id: FYPO:0006568
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which meiotic mismatch repair is abnormal. Meiotic mismatch repair is the identification and correction of base-base mismatches, small insertion-deletion loops, and regions of heterology that are present in duplex DNA formed with strands from two recombining molecules.","definition_xrefs":["GO:0000710","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic cell cycle process","termid":"FYPO:0002739"},{"relation_name":"is_a","term_name":"abnormal DNA repair","termid":"FYPO:0006567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0000293","FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001985","FYPO:0000298"],"is_obsolete":false,"name":"abnormal meiotic mismatch repair","termid":"FYPO:0006568"}


id: PBO:0089978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A-H2B chaperone, FACT complex subunit Pob3","termid":"PBO:0089978"}


id: PBO:0043918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crooked neck pre-mRNA splicing factor 1","termid":"PBO:0043918"}


id: MOD:01310
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a lysine N6-hydrogen with a quaternary amine reagent light form group.","definition_xrefs":["Unimod:60#K","PubMed:11857757"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"},{"relation_name":"is_a","term_name":"isotope tagged reagent derivatized residue","termid":"MOD:01426"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"quaternary amine labeling reagent light form N6-L-lysine","synonyms":[{"name":"GIST-Quat","type":"related"},{"name":"Quaternary amine labeling reagent light form (N-term & K)","type":"related"}],"termid":"MOD:01310"}


id: PR:000037317
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein complex that is composed of a dimer of phosphorylated Crb2.","definition_xrefs":["PMID:24074952","PomBase:AL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Crb2 dimer (Schizosaccharomyces pombe)","pombase_gene_id":"SPBC342.05","synonyms":[{"name":"DNA repair protein rhp9 dimer","type":"exact"}],"termid":"PR:000037317"}


id: PBO:0029267
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_serine_phosphorylation_during_cellular_response_to_DNA_damage","termid":"PBO:0029267"}


id: PBO:0061693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin 210 pseudogene 1","termid":"PBO:0061693"}


id: GO:0016873
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A grouping term for isomerases that cannot be more accurately categorized.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete other isomerase activity (obsolete GO:0016873)","synonyms":[{"name":"other isomerase activity","type":"exact"}],"termid":"GO:0016873"}


id: PBO:0057445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 563","termid":"PBO:0057445"}


id: GO:0098872
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A G protein-coupled neurotransmitter receptor activity occurring in the postsynaptic membrane, that is involved in regulating the cytosolic concentration of calcium ions in the postsynapse.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled neurotransmitter receptor activity","termid":"GO:0099528"},{"relation_name":"is_a","term_name":"neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration","termid":"GO:0099583"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"G protein-coupled neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration","synonyms":[{"name":"G-protein coupled neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration","type":"exact"},{"name":"G-protein coupled neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium levels","type":"exact"}],"termid":"GO:0098872"}


id: PBO:0074603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 11D","termid":"PBO:0074603"}


id: PR:G2TRS3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein kish-A that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02592","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kish (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC530.16","secondary_identifiers":["UniProtKB:G2TRS3"],"synonyms":[{"name":"Spom972h-TMEM167A","type":"exact"}],"termid":"PR:G2TRS3"}


id: PBO:0089200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis CGR1 family","termid":"PBO:0089200"}


id: GO:0070047
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A SNARE complex that contains synaptobrevin 2 (VAMP2), SNAP-25, and syntaxin 4 (or orthologs thereof).","definition_xrefs":["PMID:10336434"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SNARE complex","termid":"GO:0031201"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"synaptobrevin 2-SNAP-25-syntaxin-4 complex","synonyms":[{"name":"SNARE complex (Stx4, Snap25, Vamp2)","type":"narrow"},{"name":"Stx4-Snap25-Vamp2 complex","type":"narrow"}],"termid":"GO:0070047"}


id: PBO:0017006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"antibiotic biosynthesis monooxygenase-like domain (predicted)","termid":"PBO:0017006"}


id: PBO:0034565
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_centromere_during_vegetative_growth","termid":"PBO:0034565"}


id: PBO:0087514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of heteropentameric Replication factor C (RF-C); which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0087514"}


id: PBO:0038623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetylcholinesterase (Cartwright blood group)","termid":"PBO:0038623"}


id: PBO:0087728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Set3 complex; complex is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate","termid":"PBO:0087728"}


id: PBO:0047128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 169 member B, pseudogene","termid":"PBO:0047128"}


id: GO:0044388
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a small protein activating enzyme, such as ubiquitin-activating enzyme.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme binding","termid":"GO:0019899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"small protein activating enzyme binding","termid":"GO:0044388"}


id: PBO:0058117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4420","termid":"PBO:0058117"}


id: PBO:0087754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex; involved in the formation of Q-tRNAQ; required for remodeling of ER caused by Hmg2p overexpression; similar to bacterial GatA glutamyl-tRNA amidotransferase","termid":"PBO:0087754"}


id: PBO:0052810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 76","termid":"PBO:0052810"}


id: GO:0061438
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the renal system vasculature is generated and organized. Morphogenesis pertains to the creation of form.","definition_xrefs":["GOC:dph","PMID:11891195","GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"renal system vasculature development","termid":"GO:0061437"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"renal system vasculature morphogenesis","termid":"GO:0061438"}


id: PBO:0083993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glutathione peroxidase; functions as hydroperoxide receptor to sense intracellular hydroperoxide levels and transduce redox signal to Yap1p transcription factor; glutathione peroxidase activity is neuroprotective in models of Huntington's disease; HYR1 has a paralog, GPX1, that arose from the whole genome duplication","termid":"PBO:0083993"}


id: PBO:0045500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"desmoglein 3","termid":"PBO:0045500"}


id: PBO:0078353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (anticodon TTC) 1-1","termid":"PBO:0078353"}


id: PBO:0090429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein phosphatase (Nem1-Spo7 complex) regulatory subunit","termid":"PBO:0090429"}


id: PBO:0087921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription factor that binds IME1 Upstream Activation Signal (UAS)ru; COM2 transcription is regulated by Haa1p, Sok2p and Zap1p transcriptional activators; may bind the IME1 promoter under all growth conditions to negatively regulate its transcription in the absence of a positive regulator that binds more effectively; repressor activity may depend on phosphorylation by PKA; C. albicans homolog (MNL1) plays a role in adaptation to stress","termid":"PBO:0087921"}


id: PBO:0030778
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_mercaptoethanol","termid":"PBO:0030778"}


id: PATO:0000066
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A texture quality inhering in a bearer by virtue of the bearer's having hair or bristles.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"texture","termid":"PATO:0000150"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pilosity","termid":"PATO:0000066"}


id: GO:0141039
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and decreases the activity of a phosphatidylinositol 3-kinase (PI3K).","definition_xrefs":["PMID:31686003"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol 3-kinase regulator activity","termid":"GO:0035014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0098772","GO:0003674","GO:0030234"],"is_obsolete":false,"name":"phosphatidylinositol 3-kinase inhibitor activity","termid":"GO:0141039"}


id: GO:1900441
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to neutral pH.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of filamentous growth of a population of unicellular organisms in response to neutral pH","termid":"GO:1900440"},{"relation_name":"is_a","term_name":"negative regulation of filamentous growth of a population of unicellular organisms in response to pH","termid":"GO:1900742"},{"relation_name":"negatively_regulates","term_name":"filamentous growth of a population of unicellular organisms in response to neutral pH","termid":"GO:0036178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of filamentous growth of a population of unicellular organisms in response to neutral pH","synonyms":[{"name":"down regulation of filamentous growth of a population of unicellular organisms in response to neutral pH","type":"exact"},{"name":"down-regulation of filamentous growth of a population of unicellular organisms in response to neutral pH","type":"exact"},{"name":"downregulation of filamentous growth of a population of unicellular organisms in response to neutral pH","type":"exact"},{"name":"inhibition of filamentous growth of a population of unicellular organisms in response to neutral pH","type":"narrow"}],"termid":"GO:1900441"}


id: PBO:0060676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuron derived neurotrophic factor","termid":"PBO:0060676"}


id: GO:0036147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A digestive process in which food, usually grass or hay, is swallowed into a multi-compartmented stomach, regurgitated, chewed again, and swallowed again.","definition_xrefs":["GOC:maf","Wikipedia:Rumination"],"direct_ancestors":[{"relation_name":"is_a","term_name":"digestive system process","termid":"GO:0022600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rumination","synonyms":[{"name":"digestive rumination","type":"exact"}],"termid":"GO:0036147"}


id: PBO:0056140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LZTS1 antisense RNA 1","termid":"PBO:0056140"}


id: PBO:0000754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor Spt5","termid":"PBO:0000754"}


id: FYPO:0009084
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to a combination of lithium chloride and methyl methanesulfonate. Cells stop growing (and may die) at concentrations of lithium chloride and methyl methanesulfonate that allow wild type cells to grow.","direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002683","FYPO:0005447","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to lithium chloride and methyl methanesulfonate","synonyms":[{"name":"hypersensitive to lithium chloride and MMS","type":"exact"},{"name":"hypersensitive to lithium chloride and methyl methanesulfonate","type":"exact"},{"name":"sensitive to lithium chloride and MMS","type":"exact"},{"name":"sensitive to lithium chloride and MMS during vegetative growth","type":"exact"},{"name":"sensitive to lithium chloride and MMS in combination","type":"exact"},{"name":"sensitive to lithium chloride and methyl methanesulfonate during vegetative growth","type":"exact"},{"name":"sensitive to lithium chloride and methyl methanesulfonate in combination","type":"exact"}],"termid":"FYPO:0009084"}


id: GO:0071892
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cell activation process that occurs in thrombocytes and consists of a series of progressive, overlapping events including shape change, adhesiveness, and aggregation, which, when carried through to completion, lead to the formation of a stable hemostatic plug. Thrombocytes are nucleated cells found in non-mammalian vertebrates and are involved in hemostasis. They are the functional equivalent of the non-nucleated platelets found in mammals.","definition_xrefs":["GOC:mah","GOC:lb","PMID:10606877","PMID:15634265","PMID:20180901"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell activation","termid":"GO:0001775"},{"relation_name":"part_of","term_name":"blood coagulation","termid":"GO:0007596"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"thrombocyte activation","synonyms":[{"name":"blood coagulation, thrombocyte activation","type":"exact"}],"termid":"GO:0071892"}


id: FYPO:0001487
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to heat is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA level during vegetative growth","termid":"FYPO:0001317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal RNA level during cellular response to heat","synonyms":[{"name":"normal RNA accumulation during cellular response to heat","type":"related"},{"name":"normal RNA level during cellular response to heat during mitotic cell cycle","type":"related"},{"name":"normal RNA level during cellular response to heat during vegetative growth","type":"exact"},{"name":"normal RNA level during cellular response to high temperature","type":"exact"},{"name":"normal mRNA level during cellular response to heat","type":"narrow"},{"name":"normal transcript level during cellular response to heat","type":"exact"}],"termid":"FYPO:0001487"}


id: GO:1902336
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of retinal ganglion cell axon guidance.","definition_xrefs":["GOC:TermGenie","GOC:BHF","PMID:21658587","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of retinal ganglion cell axon guidance","termid":"GO:0090259"},{"relation_name":"is_a","term_name":"positive regulation of axon guidance","termid":"GO:1902669"},{"relation_name":"positively_regulates","term_name":"retinal ganglion cell axon guidance","termid":"GO:0031290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of retinal ganglion cell axon guidance","synonyms":[{"name":"activation of retinal ganglion cell axon guidance","type":"narrow"},{"name":"activation of retinal ganglion cell axon pathfinding","type":"narrow"},{"name":"positive regulation of retinal ganglion cell axon pathfinding","type":"exact"},{"name":"up regulation of retinal ganglion cell axon guidance","type":"exact"},{"name":"up regulation of retinal ganglion cell axon pathfinding","type":"exact"},{"name":"up-regulation of retinal ganglion cell axon guidance","type":"exact"},{"name":"up-regulation of retinal ganglion cell axon pathfinding","type":"exact"},{"name":"upregulation of retinal ganglion cell axon guidance","type":"exact"},{"name":"upregulation of retinal ganglion cell axon pathfinding","type":"exact"}],"termid":"GO:1902336"}


id: PR:O74914
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hsp3101 gene.","definition_xrefs":["UniProtKB:O74914","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione-independent glyoxalase hsp3101 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC757.03c","synonyms":[{"name":"Spom972h-hsp3101","type":"exact"},{"name":"glyoxalase 3 homolog 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"heat shock protein 31 homolog 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74914"}


id: PBO:0017565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved eukaryotic ER membrane protein implicated in cholesterol metabolism (predicted)","termid":"PBO:0017565"}


id: PBO:0043199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"creatine kinase B pseudogene 1","termid":"PBO:0043199"}


id: GO:0070922
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a single-stranded small RNA is incorporated within the RNA-initiated silencing complex (RISC). The assembly includes the maturation of the small RNA, the stabilization of the complex by accessory proteins of the RISC complex, duplex separation and the release of the second strand, forming a base-pairing complement complex that mediates gene silencing by small RNA.","definition_xrefs":["PMID:27184117","PMID:14744438","PMID:14512631","PMID:19239886","PMID:22233755"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-RNA complex assembly","termid":"GO:0022618"},{"relation_name":"part_of","term_name":"regulatory ncRNA-mediated gene silencing","termid":"GO:0031047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0065003"],"is_obsolete":false,"name":"RISC complex assembly","secondary_identifiers":["GO:0070923","GO:0035087","GO:0035280"],"synonyms":[{"name":"RISC assembly","type":"related"},{"name":"gene silencing by RNA, small RNA loading onto RISC","type":"related"},{"name":"miRISC assembly","type":"broad"},{"name":"miRNA loading onto RISC","type":"narrow"},{"name":"siRNA loading onto RISC involved in RNA interference","type":"narrow"},{"name":"siRNA loading onto RISC involved in gene silencing by small RNA","type":"narrow"},{"name":"small RNA loading onto RISC","type":"related"}],"termid":"GO:0070922"}


id: MOD:01022
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to 2-piperidinecarboxylic acid.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclized residue","termid":"MOD:00601"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"},{"relation_name":"is_a","term_name":"deaminated residue","termid":"MOD:01160"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-piperidinecarboxylic acid","synonyms":[{"name":"Pip","type":"exact"}],"termid":"MOD:01022"}


id: GO:0006256
data:
  {"annotated_genes":["SJAG_03676"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110037],"is_not":false,"summary":null,"term":"GO:0006256"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of UDP, uridine (5'-)diphosphate.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine ribonucleoside diphosphate catabolic process","termid":"GO:0009195"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleotide catabolic process","termid":"GO:0009222"},{"relation_name":"is_a","term_name":"UDP metabolic process","termid":"GO:0046048"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03676":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"UDP catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"UDP breakdown","type":"exact"},{"name":"UDP catabolism","type":"exact"},{"name":"UDP degradation","type":"exact"}],"termid":"GO:0006256","terms_by_termid":{"GO:0006256":null}}


id: MOD:01147
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(Hex)3-HexNAc-(dHex)HexNAc","termid":"MOD:01147"}


id: GO:0160056
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a macropinosome.","definition_xrefs":["PMID:19690049"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endosome membrane","termid":"GO:0010008"},{"relation_name":"part_of","term_name":"macropinosome","termid":"GO:0044354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0031410","GO:0005768"],"is_obsolete":false,"name":"macropinosome membrane","termid":"GO:0160056"}


id: GO:0022018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of lateral ganglionic eminence cells, resulting in the expansion of the cell population.","definition_xrefs":["GOC:cls","GOC:dgh","GOC:dph","GOC:jid","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"subpallium cell proliferation in forebrain","termid":"GO:0022012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lateral ganglionic eminence cell proliferation","termid":"GO:0022018"}


id: FYPO:0005213
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A gene expression phenotype in which regulation of translation in response to stress is normal (i.e. indistinguishable from wild type) in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"},{"relation_name":"is_a","term_name":"cellular response phenotype during vegetative growth","termid":"FYPO:0001342"},{"relation_name":"is_a","term_name":"translation regulation phenotype during vegetative growth","termid":"FYPO:0005044"},{"relation_name":"is_a","term_name":"normal cellular response to stress","termid":"FYPO:0005191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001320","FYPO:0000298","FYPO:0001312"],"is_obsolete":false,"name":"normal regulation of translation in response to stress during vegetative growth","synonyms":[{"name":"normal regulation of translation in response to stress during mitotic cell cycle","type":"related"},{"name":"protein synthesis after stress, normal during vegetative growth","type":"related"}],"termid":"FYPO:0005213"}


id: PBO:0110357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DENR pseudogene 1","termid":"PBO:0110357"}


id: PBO:0003804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein Pof9","termid":"PBO:0003804"}


id: SO:1000125
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000125 sequence_variant_causing_gain_of_function_of_polypeptide (obsolete SO:1000125)","synonyms":[{"name":"gain of function of polypeptide","type":"exact"},{"name":"mutation causing gain of function of polypeptide","type":"related"},{"name":"sequence variant causing gain of function of polypeptide","type":"exact"}],"termid":"SO:1000125"}


id: PBO:0060542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NAV2 antisense RNA 2","termid":"PBO:0060542"}


id: GO:0090674
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The binding of an endothelial cell to the extracellular matrix via fibronectin.","definition_xrefs":["GOC:BHF","GOC:bc","PMID:19460962","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endothelial cell-matrix adhesion","termid":"GO:0090673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"endothelial cell-matrix adhesion via fibronectin","termid":"GO:0090674"}


id: FYPO:0004632
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell during the second meiotic nuclear division is lower than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level during meiosis","termid":"FYPO:0003550"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein level during meiosis II","synonyms":[{"name":"decreased protein accumulation during meiosis II","type":"related"},{"name":"decreased protein level during second meiotic nuclear division","type":"exact"},{"name":"reduced protein level during meiosis II","type":"exact"}],"termid":"FYPO:0004632"}


