# terms

id: FYPO:0005518
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 14 of histone H3 in regions containing protein coding genes occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K14 acetylation during vegetative growth","termid":"FYPO:0005310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002494","FYPO:0001985","FYPO:0002274","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"increased histone H3-K14 acetylation at protein coding gene during vegetative growth","synonyms":[{"name":"increased histone H3-K14 acetylation at protein coding gene during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005518"}


id: PBO:0088387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase activating protein, Tsc2 paralog","termid":"PBO:0088387"}


id: PATO:0000977
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000977 absolute permeability value (obsolete PATO:0000977)","termid":"PATO:0000977"}


id: FYPO:0002229
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of ergosterol measured in a cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in cell during vegetative growth","termid":"FYPO:0001316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal cellular ergosterol level","synonyms":[{"name":"normal cellular ergosterol accumulation","type":"related"},{"name":"normal cellular ergosterol level during mitotic cell cycle","type":"related"},{"name":"normal cellular ergosterol level during vegetative growth","type":"exact"}],"termid":"FYPO:0002229"}


id: PBO:0050624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxysteroid dehydrogenase like 2","termid":"PBO:0050624"}


id: GO:0062152
data:
  {"annotated_genes":["SJAG_00325","SJAG_02099"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86573,90034],"is_not":false,"summary":null,"term":"GO:0062152"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a cytidine in mRNA + S-adenosyl-L-methionine = a 5-methylcytidine in mRNA + H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["PMID:22395603","RHEA:61464","PMID:23871666"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA methyltransferase activity","termid":"GO:0008174"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00325":null,"SJAG_02099":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0003674","GO:0140098","GO:0016741","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"mRNA (cytidine-5-)-methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mRNA (cytosine-5-)-methyltransferase activity","type":"exact"}],"termid":"GO:0062152","terms_by_termid":{"GO:0062152":null}}


id: PBO:0108979
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPMIP3 pseudogene 1","termid":"PBO:0108979"}


id: PATO:0001857
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality in a bearer by virtue of the bearer's curving inward.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"concavity","termid":"PATO:0002005"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"concave","termid":"PATO:0001857"}


id: PBO:0042151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine ligand 13","termid":"PBO:0042151"}


id: GO:0102255
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: neo-lambda-carrahexaose + H2O = neo-lambda-carratetraose + neo-lambda-carrabiose.","definition_xrefs":["EC:3.2.1.162","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003674","GO:0016798","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"neo-lambda-carrahexaose hydrolase activity","secondary_identifiers":["MetaCyc:RXN-12428"],"termid":"GO:0102255"}


id: PBO:0074150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 35 member D3","termid":"PBO:0074150"}


id: GO:0032116
data:
  {"annotated_genes":["SJAG_02606","SJAG_00796","SJAG_04508","SJAG_00682"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[85799,92339],"is_not":false,"summary":null,"term":"GO:0032116"},{"annotations":[92338,85798],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090694"},{"annotations":[106627,84010],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090695"}]},"cv_name":"cellular_component","definition":"A protein complex required for the loading of a structural maintenance of chromosome (SMC) complex, such as cohesin, condensin or SMC5/SMC6, onto DNA. Appears to be eukaryotically conserved.","definition_xrefs":["GOC:curators","PMID:10882066","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00682":null,"SJAG_00796":null,"SJAG_02606":null,"SJAG_04508":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"SMC loading complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"SCC2/SCC4 loading complex","type":"narrow"},{"name":"chromatin loading complex","type":"related"},{"name":"cohesin loading complex","type":"narrow"}],"termid":"GO:0032116","terms_by_termid":{"GO:0032116":null,"GO:0090694":null,"GO:0090695":null}}


id: PBO:0080962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 5","termid":"PBO:0080962"}


id: FYPO:0007999
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the spindle pole body is abolished during karyogamy.","definition_xrefs":["PMID:25869666","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to meiotic spindle pole body","termid":"FYPO:0003542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to spindle pole body during karyogamy","termid":"FYPO:0007999"}


id: PBO:0074748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 107","termid":"PBO:0074748"}


id: PBO:0061188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear-encoded mitochondrial tRNA-Ser (TGA) 3-1","termid":"PBO:0061188"}


id: PBO:0041155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic transcription factor 3 pseudogene 10","termid":"PBO:0041155"}


id: PBO:0083571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps verified ORF NDC1/YML031W","termid":"PBO:0083571"}


id: GO:0045711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of salivary gland determination in an adult organism.","definition_xrefs":["GOC:tb","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of salivary gland boundary specification","termid":"GO:0045706"},{"relation_name":"is_a","term_name":"regulation of adult salivary gland boundary specification","termid":"GO:0045707"},{"relation_name":"positively_regulates","term_name":"adult salivary gland boundary specification","termid":"GO:0007434"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of adult salivary gland boundary specification","synonyms":[{"name":"activation of adult salivary gland determination","type":"narrow"},{"name":"positive regulation of adult salivary gland determination","type":"exact"},{"name":"stimulation of adult salivary gland determination","type":"narrow"},{"name":"up regulation of adult salivary gland determination","type":"exact"},{"name":"up-regulation of adult salivary gland determination","type":"exact"},{"name":"upregulation of adult salivary gland determination","type":"exact"}],"termid":"GO:0045711"}


id: PBO:0113005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Argininosuccinate synthetase; catalyzes the formation of L-argininosuccinate from citrulline and L-aspartate in the arginine biosynthesis pathway; potential Cdc28p substrate","termid":"PBO:0113005"}


id: PBO:0065899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB42, member RAS oncogene family","termid":"PBO:0065899"}


id: GO:1902892
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of root hair elongation.","definition_xrefs":["PMID:22329353","GOC:TermGenie","GO_REF:0000058","GOC:als"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell growth","termid":"GO:0030307"},{"relation_name":"is_a","term_name":"positive regulation of developmental growth","termid":"GO:0048639"},{"relation_name":"is_a","term_name":"regulation of root hair elongation","termid":"GO:1902890"},{"relation_name":"is_a","term_name":"positive regulation of cell maturation","termid":"GO:1903431"},{"relation_name":"positively_regulates","term_name":"root hair elongation","termid":"GO:0048767"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of root hair elongation","synonyms":[{"name":"activation of root hair elongation","type":"narrow"},{"name":"up regulation of root hair elongation","type":"exact"},{"name":"up-regulation of root hair elongation","type":"exact"},{"name":"upregulation of root hair elongation","type":"exact"}],"termid":"GO:1902892"}


id: PBO:0071075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 77","termid":"PBO:0071075"}


id: PBO:0002769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEL1 repeat protein, unknown biological role","termid":"PBO:0002769"}


id: PBO:0066742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 39","termid":"PBO:0066742"}


id: GO:0110110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of animal organ morphogenesis.","definition_xrefs":["GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of animal organ morphogenesis","termid":"GO:2000027"},{"relation_name":"positively_regulates","term_name":"animal organ morphogenesis","termid":"GO:0009887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of animal organ morphogenesis","termid":"GO:0110110"}


id: GO:0050097
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: threo-3-methyl-L-aspartate = L-glutamate.","definition_xrefs":["EC:5.4.99.1","RHEA:12857"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular transferase activity","termid":"GO:0016866"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"methylaspartate mutase activity","secondary_identifiers":["KEGG_REACTION:R00262","MetaCyc:METHYLASPARTATE-MUTASE-RXN"],"synonyms":[{"name":"glutamate mutase activity","type":"related"},{"name":"L-threo-3-methylaspartate carboxy-aminomethylmutase activity","type":"related"},{"name":"b-methylaspartate-glutamate mutase activity","type":"related"},{"name":"beta-methylaspartate-glutamate mutase activity","type":"related"},{"name":"glutamate isomerase activity","type":"related"},{"name":"glutamic acid isomerase activity","type":"related"},{"name":"glutamic acid mutase activity","type":"related"},{"name":"glutamic isomerase activity","type":"related"},{"name":"glutamic mutase activity","type":"related"},{"name":"methylaspartic acid mutase activity","type":"related"}],"termid":"GO:0050097"}


id: GO:1900314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of maltohexaose transport.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of hexasaccharide transport","termid":"GO:1900299"},{"relation_name":"is_a","term_name":"regulation of maltohexaose transport","termid":"GO:1900312"},{"relation_name":"positively_regulates","term_name":"maltohexaose transport","termid":"GO:2001103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of maltohexaose transport","synonyms":[{"name":"activation of maltohexaose transport","type":"narrow"},{"name":"up regulation of maltohexaose transport","type":"exact"},{"name":"up-regulation of maltohexaose transport","type":"exact"},{"name":"upregulation of maltohexaose transport","type":"exact"}],"termid":"GO:1900314"}


id: PBO:0004526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cullin 1 adaptor protein Pop1","termid":"PBO:0004526"}


id: PBO:0073722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLAIN motif family member 2","termid":"PBO:0073722"}


id: GO:0014710
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of somitomeric trunk muscle development. The somitomeric trunk muscle is derived from somitomeric mesoderm. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of somitomeric trunk muscle development","termid":"GO:0014708"},{"relation_name":"is_a","term_name":"negative regulation of muscle organ development","termid":"GO:0048635"},{"relation_name":"negatively_regulates","term_name":"somitomeric trunk muscle development","termid":"GO:0002075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of somitomeric trunk muscle development","termid":"GO:0014710"}


id: PBO:0044771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 53","termid":"PBO:0044771"}


id: GO:0044719
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the size of an imaginal disc-derived wing.","definition_xrefs":["PMID:21393605"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anatomical structure size","termid":"GO:0090066"},{"relation_name":"part_of","term_name":"imaginal disc-derived wing morphogenesis","termid":"GO:0007476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of imaginal disc-derived wing size","termid":"GO:0044719"}


id: GO:0098826
data:
  {"annotated_genes":["SJAG_01848","SJAG_03812","SJAG_03795","SJAG_01460"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[63828,104717,114629,115317],"is_not":false,"summary":null,"term":"GO:0098826"}]},"cv_name":"cellular_component","definition":"The membrane of the endoplasmic reticulum tubular network.","definition_xrefs":["PMID:16469703"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum membrane","termid":"GO:0005789"},{"relation_name":"part_of","term_name":"endoplasmic reticulum tubular network","termid":"GO:0071782"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01460":null,"SJAG_01848":null,"SJAG_03795":null,"SJAG_03812":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"is_a","termid":"GO:0005789"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0005783","GO:0005789"],"is_obsolete":false,"name":"endoplasmic reticulum tubular network membrane","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null,"PMID:21802294":null},"termid":"GO:0098826","terms_by_termid":{"GO:0098826":null}}


id: PBO:0046187
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"engulfment and cell motility 2","termid":"PBO:0046187"}


id: GO:0060574
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process, independent of morphogenetic (shape) change, that is required for a columna/cuboidal epithelial cell of the intestine to attain its fully functional state. A columnar/cuboidal epithelial cell of the intestine mature as they migrate from the intestinal crypt to the villus.","definition_xrefs":["PMID:18824147","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"columnar/cuboidal epithelial cell maturation","termid":"GO:0002069"},{"relation_name":"part_of","term_name":"intestinal epithelial cell development","termid":"GO:0060576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intestinal epithelial cell maturation","termid":"GO:0060574"}


id: GO:0050399
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5,12-dihydroxanthommatin + NAD+ = H+ + NADH + xanthommatin.","definition_xrefs":["RHEA:13417","EC:1.3.1.41"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"xanthommatin reductase activity","secondary_identifiers":["KEGG_REACTION:R03787","MetaCyc:XANTHOMMATIN-REDUCTASE-RXN"],"synonyms":[{"name":"5,12-dihydroxanthommatin:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0050399"}


id: PBO:0070360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY4 pseudogene 36","termid":"PBO:0070360"}


id: PBO:0030977
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K9_dimethylation_at_centromere_inner_repeat","termid":"PBO:0030977"}


id: RO:0002003
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relation that holds between two neurons that are electrically coupled via gap junctions.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_neural_circuit_with","termid":"RO:0000300"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"electrically_synapsed_to","termid":"RO:0002003"}


id: GO:0072045
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenetic process in which the renal epithelium narrows along one axis and lengthens in a perpendicular axis that contributes to the shaping of a nephron.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"convergent extension involved in organogenesis","termid":"GO:0060029"},{"relation_name":"part_of","term_name":"nephron morphogenesis","termid":"GO:0072028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"convergent extension involved in nephron morphogenesis","termid":"GO:0072045"}


id: PBO:0000070
data:
  {"annotated_genes":["SJAG_04697"],"annotation_feature_type":"gene","cv_annotations":{"warning":[{"annotations":[56064],"is_not":false,"summary":null,"term":"PBO:0000070"}]},"cv_name":"warning","gene_count":1,"genes_by_uniquename":{"SJAG_04697":null},"genotype_count":0,"is_obsolete":false,"name":"gene structure updated","termid":"PBO:0000070","terms_by_termid":{"PBO:0000070":null}}


id: PBO:0070029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1326, pseudogene","termid":"PBO:0070029"}


id: GO:1905909
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of dauer entry.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:21531333"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of dauer larval development","termid":"GO:0061065"},{"relation_name":"regulates","term_name":"dauer entry","termid":"GO:0043053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of dauer entry","synonyms":[{"name":"regulation of nematode entry into dormancy","type":"exact"}],"termid":"GO:1905909"}


id: GO:0019792
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete APG12 hydrolase activity (obsolete GO:0019792)","synonyms":[{"name":"APG12 hydrolase activity","type":"exact"}],"termid":"GO:0019792"}


id: PBO:0058133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4433b","termid":"PBO:0058133"}


id: PBO:0081390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 230","termid":"PBO:0081390"}


id: GO:0035098
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multimeric protein complex that can methylate lysine-27 and lysine-9 residues of histone H3. In Drosophila the core subunits of the complex include ESC, E(Z), CAF1 (NURF-55) and SU(Z)12. In mammals the core subunits of the complex include EED, EZH2, SUZ12 and RBBP4.","definition_xrefs":["PMID:20064375","PMID:12408863","PMID:33232890","PMID:31123059","PMID:12408864","GOC:sp","GOC:krc","PMID:17107999","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"PcG protein complex","termid":"GO:0031519"},{"relation_name":"is_a","term_name":"histone methyltransferase complex","termid":"GO:0035097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0005654","GO:0032991"],"is_obsolete":false,"name":"ESC/E(Z) complex","synonyms":[{"name":"Extra Sex Combs/Enhancer of Zeste complex","type":"exact"},{"name":"PRC2 complex","type":"exact"},{"name":"polycomb repressive complex 2","type":"exact"}],"termid":"GO:0035098"}


id: PBO:0017525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prefoldin subunit 2, Gim4(predicted)","termid":"PBO:0017525"}


id: PBO:0063277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin gamma subfamily A, 3","termid":"PBO:0063277"}


id: GO:0000085
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle 'gap' phase which is the interval between the completion of DNA synthesis and the beginning of DNA segregation by mitosis.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G2 phase","termid":"GO:0051319"},{"relation_name":"part_of","term_name":"mitotic interphase","termid":"GO:0051329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0051329"}],"interesting_parent_ids":["GO:0008150","GO:0051329"],"is_obsolete":false,"name":"mitotic G2 phase","synonyms":[{"name":"G2 phase of mitotic cell cycle","type":"exact"}],"termid":"GO:0000085"}


id: PBO:0035843
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-aggregated_filamentous_actin_in_cytoplasm","termid":"PBO:0035843"}


id: FYPO:0004815
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of siRNA derived from antisense transcription of ribosomal DNA measured in a cell is greater than normal.","definition_xrefs":["PMID:25417108","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased antisense RNA level","termid":"FYPO:0003557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"increased rDNA antisense siRNA level","synonyms":[{"name":"increased accumulation of rDNA antisense small RNAs","type":"related"},{"name":"increased antisense small RNA at rDNA","type":"exact"},{"name":"increased antisense transcription-derived small RNA level at rDNA","type":"exact"},{"name":"increased rDNA antisense small RNA accumulation","type":"related"},{"name":"increased rDNA antisense small RNA level during mitotic cell cycle","type":"related"},{"name":"increased rDNA antisense small RNA level during vegetative growth","type":"exact"}],"termid":"FYPO:0004815"}


id: PBO:0053693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 891","termid":"PBO:0053693"}


id: GO:0002045
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that modulates the frequency, rate or extent of attachment of a blood vessel endothelial cell to another cell or to the extracellular matrix involved in intussusceptive angiogenesis.","definition_xrefs":["PMID:16391003"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell adhesion","termid":"GO:0030155"},{"relation_name":"part_of","term_name":"intussusceptive angiogenesis","termid":"GO:0002041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"regulation of cell adhesion involved in intussusceptive angiogenesis","termid":"GO:0002045"}


id: PR:O60185
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A methylthioribose-1-phosphate isomerase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03887"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylthioribose-1-phosphate isomerase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC23E6.10c","secondary_identifiers":["UniProtKB:O60185"],"synonyms":[{"name":"M1Pi (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"MTR-1-P isomerase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"S-methyl-5-thioribose-1-phosphate isomerase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-MRI1","type":"exact"},{"name":"translation initiation factor eIF-2B subunit alpha/beta/delta-like protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60185"}


id: FYPO:0003116
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to plumbagin. Cells stop growing (and may die) at a concentration of plumbagin that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002683","FYPO:0000139","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to plumbagin","synonyms":[{"name":"hypersensitive to plumbagin","type":"exact"},{"name":"sensitive to plumbagin during mitotic cell cycle","type":"related"},{"name":"sensitive to plumbagin during vegetative growth","type":"exact"}],"termid":"FYPO:0003116"}


id: GO:1901141
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of lignin biosynthetic process.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of secondary metabolite biosynthetic process","termid":"GO:1900376"},{"relation_name":"is_a","term_name":"regulation of phenylpropanoid metabolic process","termid":"GO:2000762"},{"relation_name":"regulates","term_name":"lignin biosynthetic process","termid":"GO:0009809"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"regulation of lignin biosynthetic process","synonyms":[{"name":"regulation of lignin anabolism","type":"exact"},{"name":"regulation of lignin biosynthesis","type":"exact"},{"name":"regulation of lignin formation","type":"exact"},{"name":"regulation of lignin synthesis","type":"exact"}],"termid":"GO:1901141"}


id: PBO:0000932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box/WD repeat protein protein Pof1","termid":"PBO:0000932"}


id: PBO:0056248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"male germ cell associated kinase","termid":"PBO:0056248"}


id: PBO:0047486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferredoxin 1 pseudogene 2","termid":"PBO:0047486"}


id: PBO:0046847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid binding protein 7 pseudogene 2","termid":"PBO:0046847"}


id: PBO:0065725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Prader-Willi region non-protein coding RNA 2","termid":"PBO:0065725"}


id: PR:Q9UUE2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cnt5 gene.","definition_xrefs":["UniProtKB:Q9UUE2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein csx2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17G9.08c","synonyms":[{"name":"Spom972h-cnt5","type":"exact"}],"termid":"PR:Q9UUE2"}


id: PBO:0003482
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RIng-localized protein with homology to Diaphanous GTPase-binding domain","termid":"PBO:0003482"}


id: PBO:0068999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 243, pseudogene","termid":"PBO:0068999"}


id: PBO:0079800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP glucuronosyltransferase family 2 member B11","termid":"PBO:0079800"}


id: PBO:0049140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamic--pyruvic transaminase","termid":"PBO:0049140"}


id: GO:0015871
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of choline into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Choline (2-hydroxyethyltrimethylammonium) is an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transport","termid":"GO:0015695"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"choline transport","termid":"GO:0015871"}


id: FYPO:0009066
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of amorolfine than normal.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0005447","FYPO:0002682","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"resistance to amorolfine","synonyms":[{"name":"resistance to amorolfine during mitotic cell cycle","type":"related"},{"name":"resistance to amorolfine during vegetative growth","type":"exact"},{"name":"resistant to amorolfine","type":"exact"}],"termid":"FYPO:0009066"}


id: GO:0014018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a neuroblast in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed.","definition_xrefs":["GOC:ef","ISBN:0878932585"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate specification","termid":"GO:0001708"},{"relation_name":"part_of","term_name":"neuroblast fate commitment","termid":"GO:0014017"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuroblast fate specification","termid":"GO:0014018"}


id: PBO:0063541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylethanolamine binding protein 1","termid":"PBO:0063541"}


id: GO:0008197
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete yolk protein (obsolete GO:0008197)","synonyms":[{"name":"yolk protein","type":"exact"}],"termid":"GO:0008197"}


id: GO:0009960
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the endosperm over time, from its formation to the mature structure. The endosperm is formed during fertilization and provides nutrients to the developing embryo.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"tissue development","termid":"GO:0009888"},{"relation_name":"part_of","term_name":"seed development","termid":"GO:0048316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endosperm development","termid":"GO:0009960"}


id: PBO:0043067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cholinergic receptor muscarinic 3","termid":"PBO:0043067"}


id: GO:0043130
data:
  {"annotated_genes":["SJAG_00521","SJAG_01585","SJAG_00821","SJAG_03189","SJAG_00941","SJAG_04024","SJAG_02116","SJAG_01467","SJAG_01134","SJAG_00439","SJAG_00907","SJAG_03250","SJAG_02021","SJAG_02912","SJAG_00312","SJAG_04379","SJAG_00805","SJAG_02833","SJAG_01051","SJAG_02451","SJAG_01936","SJAG_03756"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[58023,60100,60551,61160,62365,65301,66370,67599,70434,70938,71043,72090,72464,73017,74753,75641,76196,76497,77318,77331,77896,78746],"is_not":false,"summary":null,"term":"GO:0043130"}]},"cv_name":"molecular_function","definition":"Binding to ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation.","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like protein binding","termid":"GO:0032182"}],"gene_count":22,"genes_by_uniquename":{"SJAG_00312":null,"SJAG_00439":null,"SJAG_00521":null,"SJAG_00805":null,"SJAG_00821":null,"SJAG_00907":null,"SJAG_00941":null,"SJAG_01051":null,"SJAG_01134":null,"SJAG_01467":null,"SJAG_01585":null,"SJAG_01936":null,"SJAG_02021":null,"SJAG_02116":null,"SJAG_02451":null,"SJAG_02833":null,"SJAG_02912":null,"SJAG_03189":null,"SJAG_03250":null,"SJAG_03756":null,"SJAG_04024":null,"SJAG_04379":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"ubiquitin binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-983152","Reactome:R-HSA-205008","Reactome:R-HSA-1169404"],"termid":"GO:0043130","terms_by_termid":{"GO:0043130":null}}


id: GO:0051964
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of synapse assembly, the aggregation, arrangement and bonding together of a set of components to form a synapse.","definition_xrefs":["GOC:ai","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of nervous system development","termid":"GO:0051961"},{"relation_name":"is_a","term_name":"regulation of synapse assembly","termid":"GO:0051963"},{"relation_name":"is_a","term_name":"negative regulation of cell junction assembly","termid":"GO:1901889"},{"relation_name":"is_a","term_name":"negative regulation of synapse organization","termid":"GO:1905809"},{"relation_name":"negatively_regulates","term_name":"synapse assembly","termid":"GO:0007416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"negative regulation of synapse assembly","synonyms":[{"name":"down regulation of synapse assembly","type":"exact"},{"name":"down-regulation of synapse assembly","type":"exact"},{"name":"downregulation of synapse assembly","type":"exact"},{"name":"inhibition of synapse assembly","type":"narrow"},{"name":"negative regulation of synapse biogenesis","type":"exact"},{"name":"negative regulation of synaptogenesis","type":"exact"}],"termid":"GO:0051964"}


id: GO:0120009
data:
  {"annotated_genes":["SJAG_03710","SJAG_05268","SJAG_03741","SJAG_03172","SJAG_16459","SJAG_01229","SJAG_03721","SJAG_01329","SJAG_03416","SJAG_04370","SJAG_03746","SJAG_00230","SJAG_00576","SJAG_01225","SJAG_01305","SJAG_03851","SJAG_03338"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57070,60635,62283,64473,93652],"is_not":false,"summary":null,"term":"GO:0120009"},{"annotations":[112316,103603,96619,103731,94730,104728,100139,101918,85352,93653,87016,97377,102812,105603,93592],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120010"},{"annotations":[102400],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120011"}]},"cv_name":"biological_process","definition":"The transport of lipids between membranes in which a lipid molecule is transported through an aqueous phase from the outer leaflet of a donor membrane to the outer leaflet of an acceptor membrane. This process does not require metabolic energy and can be either spontaneous or mediated by lipid transfer proteins (LTPs).","definition_xrefs":["PMID:24220498","GOC:krc","PMID:25797198","PMID:20823909"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid transport","termid":"GO:0006869"},{"relation_name":"is_a","term_name":"membrane organization","termid":"GO:0061024"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00230":null,"SJAG_00576":null,"SJAG_01225":null,"SJAG_01229":null,"SJAG_01305":null,"SJAG_01329":null,"SJAG_03172":null,"SJAG_03338":null,"SJAG_03416":null,"SJAG_03710":null,"SJAG_03721":null,"SJAG_03741":null,"SJAG_03746":null,"SJAG_03851":null,"SJAG_04370":null,"SJAG_05268":null,"SJAG_16459":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150","GO:0061024"],"is_obsolete":false,"name":"intermembrane lipid transfer","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"termid":"GO:0120009","terms_by_termid":{"GO:0120009":null,"GO:0120010":null,"GO:0120011":null}}


id: PR:O14236
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nucleolar GTP-binding protein 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar GTP-binding protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F6.03c","secondary_identifiers":["UniProtKB:O14236"],"synonyms":[{"name":"SPAC6F6.03c","type":"related"},{"name":"Spom972h-GNL2","type":"exact"}],"termid":"PR:O14236"}


id: PBO:0053819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1080","termid":"PBO:0053819"}


id: GO:1905597
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of low-density lipoprotein particle receptor binding.","definition_xrefs":["GO_REF:0000059","GOC:nc","PMID:22848640","GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of receptor binding","termid":"GO:1900122"},{"relation_name":"is_a","term_name":"regulation of low-density lipoprotein particle receptor binding","termid":"GO:1905595"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of low-density lipoprotein particle receptor binding","synonyms":[{"name":"activation of LDL receptor binding","type":"narrow"},{"name":"activation of low-density lipoprotein particle receptor binding","type":"narrow"},{"name":"activation of low-density lipoprotein receptor binding","type":"narrow"},{"name":"positive regulation of LDL receptor binding","type":"exact"},{"name":"positive regulation of low-density lipoprotein receptor binding","type":"exact"},{"name":"up regulation of LDL receptor binding","type":"exact"},{"name":"up regulation of low-density lipoprotein particle receptor binding","type":"exact"},{"name":"up regulation of low-density lipoprotein receptor binding","type":"exact"},{"name":"up-regulation of LDL receptor binding","type":"exact"},{"name":"up-regulation of low-density lipoprotein particle receptor binding","type":"exact"},{"name":"up-regulation of low-density lipoprotein receptor binding","type":"exact"},{"name":"upregulation of LDL receptor binding","type":"exact"},{"name":"upregulation of low-density lipoprotein particle receptor binding","type":"exact"},{"name":"upregulation of low-density lipoprotein receptor binding","type":"exact"}],"termid":"GO:1905597"}


id: GO:0120124
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that primes vacuolar or vesicular membranes for fusion with other intracellular membranes, by promoting the dissociation of cis-SNARE complexes.","definition_xrefs":["GOC:lnp","PMID:9015301"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"membrane fusion priming complex","synonyms":[{"name":"GATE-16 complex","type":"exact"},{"name":"LMA1 complex","type":"exact"}],"termid":"GO:0120124"}


id: PBO:0028595
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_chromatin_binding_during_cellular_response_to_methyl_methanesulfonate","termid":"PBO:0028595"}


id: PBO:0038500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily C member 9","termid":"PBO:0038500"}


id: PBO:0074752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 111","termid":"PBO:0074752"}


id: PBO:0073721
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLAIN motif family member 1","termid":"PBO:0073721"}


id: PBO:0049526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2AZ1 divergent transcript","termid":"PBO:0049526"}


id: GO:0030736
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + phenol = S-adenosyl-L-homocysteine + anisole + H+.","definition_xrefs":["RHEA:14809","EC:2.1.1.25"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016741"],"is_obsolete":false,"name":"phenol O-methyltransferase activity","secondary_identifiers":["KEGG_REACTION:R01239","MetaCyc:PHENOL-O-METHYLTRANSFERASE-RXN"],"synonyms":[{"name":"PMT","type":"related"},{"name":"S-adenosyl-L-methionine:phenol O-methyltransferase activity","type":"related"}],"termid":"GO:0030736"}


id: GO:0050448
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-cyclopiazonate + A = alpha-cyclopiazonate + AH(2).","definition_xrefs":["RHEA:14525"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond","termid":"GO:0046992"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"beta-cyclopiazonate dehydrogenase activity","secondary_identifiers":["MetaCyc:BETA-CYCLOPIAZONATE-DEHYDROGENASE-RXN","EC:1.21.99.1","KEGG_REACTION:R04080"],"synonyms":[{"name":"b-cyclopiazonate dehydrogenase activity","type":"exact"},{"name":"beta-cyclopiazonate oxidocyclase activity","type":"related"},{"name":"beta-cyclopiazonate:(acceptor) oxidoreductase (cyclizing)","type":"related"},{"name":"beta-cyclopiazonate:acceptor oxidoreductase (cyclizing)","type":"related"},{"name":"beta-cyclopiazonic oxidocyclase activity","type":"related"}],"termid":"GO:0050448"}


id: PBO:0088532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein phosphatase PP1 regulatory subunit Reg1","termid":"PBO:0088532"}


id: GO:0019401
data:
  {"annotated_genes":["SJAG_01012","SJAG_00409"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102569,90083],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006114"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of alditols, any polyhydric alcohol derived from the acyclic form of a monosaccharide by reduction of its aldehyde or keto group to an alcoholic group.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate biosynthetic process","termid":"GO:0016051"},{"relation_name":"is_a","term_name":"alditol metabolic process","termid":"GO:0019400"},{"relation_name":"is_a","term_name":"polyol biosynthetic process","termid":"GO:0046173"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00409":null,"SJAG_01012":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"alditol biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"alditol anabolism","type":"exact"},{"name":"alditol biosynthesis","type":"exact"},{"name":"alditol formation","type":"exact"},{"name":"alditol synthesis","type":"exact"}],"termid":"GO:0019401","terms_by_termid":{"GO:0006114":null}}


id: GO:0051754
data:
  {"annotated_genes":["SJAG_01082","SJAG_04699","SJAG_03989","SJAG_03681","SJAG_01805","SJAG_00600","SJAG_03926","SJAG_04126","SJAG_00229","SJAG_04259","SJAG_01601"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[69451],"is_not":false,"summary":null,"term":"GO:0051754"},{"annotations":[109305,110565,103904,109859,97889,97369,100583,89902,95223,111968],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990813"}]},"cv_name":"biological_process","definition":"The cell cycle process in which centromeres of sister chromatids are joined during meiosis.","definition_xrefs":["PMID:14730319","PMID:16325576"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic sister chromatid cohesion","termid":"GO:0051177"},{"relation_name":"is_a","term_name":"centromeric sister chromatid cohesion","termid":"GO:0070601"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00229":null,"SJAG_00600":null,"SJAG_01082":null,"SJAG_01601":null,"SJAG_01805":null,"SJAG_03681":null,"SJAG_03926":null,"SJAG_03989":null,"SJAG_04126":null,"SJAG_04259":null,"SJAG_04699":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"meiotic sister chromatid cohesion, centromeric","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"centromeric meiotic sister chromatin cohesion","type":"exact"},{"name":"meiotic sister chromatid cohesion at centromere","type":"exact"},{"name":"sister chromatid cohesion at centromere at meiosis I","type":"exact"}],"termid":"GO:0051754","terms_by_termid":{"GO:0051754":null,"GO:1990813":null}}


id: GO:0000234
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + ethanolamine phosphate = S-adenosyl-L-homocysteine + N-methylethanolamine phosphate.","definition_xrefs":["EC:2.1.1.103"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-methyltransferase activity","termid":"GO:0008170"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016741","GO:0003674"],"is_obsolete":false,"name":"phosphoethanolamine N-methyltransferase activity","secondary_identifiers":["KEGG_REACTION:R02037","KEGG_REACTION:R06868"],"synonyms":[{"name":"S-adenosyl-L-methionine:ethanolamine-phosphate N-methyltransferase activity","type":"related"},{"name":"phosphoethanolamine methyltransferase activity","type":"related"}],"termid":"GO:0000234"}


id: PBO:0050175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 3 pseudogene 31","termid":"PBO:0050175"}


id: PBO:0068125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 432","termid":"PBO:0068125"}


id: GO:0021926
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of neuroblasts that will give rise to Golgi cells. A Golgi cell is an inhibitory GABAergic interneuron found in the cerebellar cortex.","definition_xrefs":["GOC:jid","PMID:15157725","GOC:dph","GOC:cls","GOC:dgh","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell proliferation in hindbrain ventricular zone","termid":"GO:0021923"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Golgi cell precursor proliferation","termid":"GO:0021926"}


id: PBO:0077804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOX high mobility group box family member 2","termid":"PBO:0077804"}


id: GO:0018617
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 4-aminobenzenesulfonate + 2 H+ + O2 + 2 e- = NH3 + 4-sulfocatechol.","definition_xrefs":["UM-BBD_reactionID:r0580"],"gene_count":0,"genotype_count":0,"name":"obsolete 4-aminobenzenesulfonate 3,4-dioxygenase (deaminating) activity (obsolete GO:0018617)","synonyms":[{"name":"4-aminobenzenesulphonate 3,4-dioxygenase (deaminating) activity","type":"exact"}],"termid":"GO:0018617"}


id: GO:0044781
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a bacterial-type flagellum, a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope which functions in cell motility.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle organization","termid":"GO:0006996"},{"relation_name":"is_a","term_name":"cell projection organization","termid":"GO:0030030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bacterial-type flagellum organization","termid":"GO:0044781"}


id: PBO:0076677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor A1 pseudogene 2","termid":"PBO:0076677"}


id: PBO:0057317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 518d","termid":"PBO:0057317"}


id: PBO:0062677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 14 subfamily J member 1","termid":"PBO:0062677"}


id: PBO:0090104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exocyst complex subunit Exo84","termid":"PBO:0090104"}


id: PBO:0041366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 4 open reading frame 36","termid":"PBO:0041366"}


id: GO:0030899
data:
  {"annotated_genes":["SJAG_03703"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[113932],"is_not":false,"summary":null,"term":"GO:0030899"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + H2O = ADP + phosphate. This reaction requires the presence of calcium ion (Ca2+).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-dependent activity","termid":"GO:0140657"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03703":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"calcium-dependent ATPase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0030899","terms_by_termid":{"GO:0030899":null}}


id: PBO:0083436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YNL108C","termid":"PBO:0083436"}


id: PBO:0058318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4691","termid":"PBO:0058318"}


id: GO:0019615
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of catechol via the ortho-cleavage pathway, in which the catechol aromatic ring is broken between the two carbon atoms bearing hydroxyl groups.","definition_xrefs":["GOC:jl","PMID:7765833"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol-containing compound catabolic process","termid":"GO:0019614"},{"relation_name":"is_a","term_name":"beta-ketoadipate pathway","termid":"GO:0042952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"catechol catabolic process, ortho-cleavage","secondary_identifiers":["MetaCyc:CATECHOL-ORTHO-CLEAVAGE-PWY"],"synonyms":[{"name":"catechol breakdown, ortho-cleavage","type":"exact"},{"name":"catechol degradation, ortho-cleavage","type":"exact"}],"termid":"GO:0019615"}


id: PBO:0017905
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ask2 is the name which was given to the spurious orf on the opposite strand","termid":"PBO:0017905"}


id: PBO:0060638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor coactivator 1","termid":"PBO:0060638"}


id: PBO:0046945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 72 member B","termid":"PBO:0046945"}


id: PBO:0076568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 3I","termid":"PBO:0076568"}


id: GO:0046506
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of sulfolipid, a compound containing a sulfonic acid residue joined by a carbon-sulfur bond to a lipid.","definition_xrefs":["PMID:9751667"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid biosynthetic process","termid":"GO:0008610"},{"relation_name":"is_a","term_name":"sulfur compound biosynthetic process","termid":"GO:0044272"},{"relation_name":"is_a","term_name":"sulfolipid metabolic process","termid":"GO:0046505"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006790","GO:0006629"],"is_obsolete":false,"name":"sulfolipid biosynthetic process","synonyms":[{"name":"sulfolipid anabolism","type":"exact"},{"name":"sulfolipid biosynthesis","type":"exact"},{"name":"sulfolipid formation","type":"exact"},{"name":"sulfolipid synthesis","type":"exact"},{"name":"sulpholipid biosynthesis","type":"exact"},{"name":"sulpholipid biosynthetic process","type":"exact"}],"termid":"GO:0046506"}


id: PBO:0040478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ataxin 1 like","termid":"PBO:0040478"}


id: GO:0106375
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dNTP + H2O = 2'-deoxynucleoside + H+ + triphosphate.","definition_xrefs":["RHEA:46148"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triphosphoric monoester hydrolase activity","termid":"GO:0016793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824","GO:0016788"],"is_obsolete":false,"name":"deoxynucleoside triphosphate hydrolase activity","termid":"GO:0106375"}


id: PBO:0080996
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 32","termid":"PBO:0080996"}


id: GO:0097238
data:
  {"annotated_genes":["SJAG_02960"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101119],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140041"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylglyoxal stimulus. Methylglyoxal is a 2-oxoaldehyde derived from propanal.","definition_xrefs":["GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to methylglyoxal","termid":"GO:0051595"},{"relation_name":"is_a","term_name":"cellular response to aldehyde","termid":"GO:0110096"},{"relation_name":"is_a","term_name":"cellular response to ketone","termid":"GO:1901655"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02960":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to methylglyoxal","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0097238","terms_by_termid":{"GO:0140041":null}}


id: FYPO:0002416
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which a cell undergoes one or a few rounds of cell division before cells die, resulting in the formation a colony that contains only a few inviable cells in which cell shape is altered and cell volume is larger than normal. Up to 6 rounds of cell division (generating 64 cells) may be observed, but 3 divisions or fewer is more typical.","definition_xrefs":["PomBase:mah","PomBase:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable microcolony, swollen cells, abnormal cell shape (obsolete FYPO:0002416)","synonyms":[{"name":"inviable microcolonies swollen misshapen cells","type":"related"},{"name":"inviable microcolony, enlarged vegetative cells with abnormal cell shape","type":"related"},{"name":"inviable microcolony, large vegetative cells with abnormal cell shape","type":"related"},{"name":"inviable microcolony, vegetative cells with increased cell size and abnormal cell shape","type":"related"},{"name":"inviable microcolony, vegetative cells with increased cell volume and abnormal cell shape","type":"exact"}],"termid":"FYPO:0002416"}


id: PBO:0059354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S16 pseudogene 2","termid":"PBO:0059354"}


id: PBO:0050471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HOXA cluster antisense RNA 3","termid":"PBO:0050471"}


id: PBO:0087376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Starch hydrolysis","termid":"PBO:0087376"}


id: PBO:0089383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase Pyp1","termid":"PBO:0089383"}


id: PBO:0060988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuroblastoma highly expressed DDX5 stabilizing lncRNA 1","termid":"PBO:0060988"}


id: GO:0070428
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of the nucleotide-binding oligomerization domain containing 1 (NOD1) pathway.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway","termid":"GO:0070424"},{"relation_name":"regulates","term_name":"nucleotide-binding oligomerization domain containing 1 signaling pathway","termid":"GO:0070427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway","synonyms":[{"name":"regulation of NOD1 signaling pathway","type":"exact"},{"name":"regulation of nucleotide-binding oligomerization domain containing 1 signalling pathway","type":"exact"}],"termid":"GO:0070428"}


id: PBO:0038883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylate cyclase 9","termid":"PBO:0038883"}


id: PBO:0044515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CZIB divergent transcript","termid":"PBO:0044515"}


id: PR:O14320
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- coa1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14320"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly factor 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16E9.03c","synonyms":[{"name":"Spom972h-coa1","type":"exact"}],"termid":"PR:O14320"}


id: CHEBI:17489
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","definition":"3',5'-cyclic purine nucleotide having having adenine as the nucleobase.","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3',5'-cyclic AMP","secondary_identifiers":["CHEBI:11673","CHEBI:19827","CHEBI:1325","CHEBI:41588"],"termid":"CHEBI:17489"}


id: PBO:0005552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin nup211","termid":"PBO:0005552"}


id: PR:Q10061
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- lsh1 gene.","definition_xrefs":["UniProtKB:Q10061","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein 70 homolog lhs1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F5.06","synonyms":[{"name":"Spom972h-lsh1","type":"exact"}],"termid":"PR:Q10061"}


id: PBO:0071464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32 pseudogene 5","termid":"PBO:0071464"}


id: PBO:0080501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WAC antisense RNA 1 (head to head)","termid":"PBO:0080501"}


id: PBO:0071506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L34 pseudogene 9","termid":"PBO:0071506"}


id: PR:000059629
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GTP-binding protein rhb1 (Schizosaccharomyces pombe) that is non-covalently bound to GTP.","definition_xrefs":["PRO:DAN","PomBase:VW"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rhb1/GTP+","pombase_gene_id":"SPBC428.16c","synonyms":[{"name":"PomBase_original_PRO_term_name: GTP-binding protein rhb1, GTP-bound form (Schizosaccharomyces pombe)","type":"exact"},{"name":"Rhb1/GTP+","type":"exact"},{"name":"Spom-rhb1/GTP+","type":"exact"}],"termid":"PR:000059629"}


id: PBO:0073810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC6A14 pseudogene 1","termid":"PBO:0073810"}


id: PBO:0050702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family B (small) member 1","termid":"PBO:0050702"}


id: _global:causally_upstream_of_or_within
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q.","direct_ancestors":[{"relation_name":"is_a","term_name":"causal_relation_between_processes","termid":"_global:causal_relation_between_processes"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"causally_upstream_of_or_within","secondary_identifiers":["RO:0002418"],"synonyms":[{"name":"affects","type":"related"}],"termid":"_global:causally_upstream_of_or_within"}


id: PBO:0085345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phospholipase B (lysophospholipase) involved in lipid metabolism; displays transacylase activity in vitro; overproduction confers resistance to lysophosphatidylcholine","termid":"PBO:0085345"}


id: PBO:0003057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenine deaminase Dea2","termid":"PBO:0003057"}


id: GO:0046765
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A viral budding that starts with formation of a membrane curvature in the host nuclear membrane.","definition_xrefs":["GOC:bf","ISBN:0072370319"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral budding","termid":"GO:0046755"},{"relation_name":"part_of","term_name":"exit of virus from host cell nucleus by nuclear egress","termid":"GO:0046802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral budding from nuclear membrane","secondary_identifiers":["GO:0046749"],"synonyms":[{"name":"nuclear membrane viral budding","type":"exact"},{"name":"nuclear membrane viral budding during viral capsid envelopment","type":"related"},{"name":"viral budding from nuclear membrane by viral capsid envelopment","type":"related"},{"name":"viral budding from nuclear membrane during viral capsid envelopment","type":"related"},{"name":"virus budding from nuclear membrane","type":"exact"},{"name":"virus budding from nuclear membrane by viral capsid envelopment","type":"exact"},{"name":"virus budding from nuclear membrane during viral capsid envelopment","type":"related"}],"termid":"GO:0046765"}


id: GO:0048366
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phyllome development","termid":"GO:0048827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leaf development","termid":"GO:0048366"}


id: PR:Q9UT96
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC323.03c gene.","definition_xrefs":["UniProtKB:Q9UT96","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C323.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC323.03c","synonyms":[{"name":"Spom972h-SPAC323.03c","type":"exact"}],"termid":"PR:Q9UT96"}


id: PBO:0064424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patatin like phospholipase domain containing 2","termid":"PBO:0064424"}


id: GO:0150189
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of interleukin-32 production.","definition_xrefs":["PMID:23729669","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"interleukin-32 production","termid":"GO:0072637"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of interleukin-32 production","secondary_identifiers":["GO:0150192"],"synonyms":[{"name":"regulation of interleukin-32 biosynthetic process","type":"narrow"},{"name":"regulation of interleukin-32 secretion","type":"narrow"}],"termid":"GO:0150189"}


id: FYPO:0003874
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in G0 phase in which the nucleus contains one or more structures of great electron density that are not found in wild type cells.","definition_xrefs":["PomBase:mah","PMID:20133687"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nucleus","termid":"FYPO:0002403"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002403","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal dense body present in nucleus during G0","synonyms":[{"name":"abnormal dense body present in nucleus during cell quiescence","type":"exact"},{"name":"abnormal dense body present in nucleus during quiescence","type":"exact"}],"termid":"FYPO:0003874"}


id: PBO:0048175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose-6-phosphatase catalytic subunit 2","termid":"PBO:0048175"}


id: FYPO:0006936
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the plasma membrane surrounding the cell division site is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to plasma membrane during vegetative growth","termid":"FYPO:0002126"},{"relation_name":"is_a","term_name":"abnormal protein localization to plasma membrane at cell division site during vegetative growth","termid":"FYPO:0005544"},{"relation_name":"is_a","term_name":"abolished protein localization to cell periphery during vegetative growth","termid":"FYPO:0005571"},{"relation_name":"is_a","term_name":"abolished protein localization to membrane during vegetative growth","termid":"FYPO:0005757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to plasma membrane at cell division site during vegetative growth","synonyms":[{"name":"abolished protein localisation to plasma membrane at cell division site during vegetative growth","type":"exact"},{"name":"abolished protein localization in plasma membrane at cell division site during vegetative growth","type":"exact"},{"name":"abolished protein localization to cell membrane at cell division site during vegetative growth","type":"exact"},{"name":"abolished protein localization to plasma membrane at cell division site during mitotic cell cycle","type":"related"},{"name":"protein localization to plasma membrane at cell division site abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0006936"}


id: GO:0052114
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The responsive adjustment of an organism to the pH conditions in or around its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete adaptation to host pH environment (obsolete GO:0052114)","synonyms":[{"name":"adaptation to host pH environment","type":"exact"},{"name":"pH tolerance to host environment","type":"exact"}],"termid":"GO:0052114"}


id: GO:0002538
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The synthesis or release of products of arachidonic acid metabolism following a stimulus as part of an inflammatory response, resulting in an increase in their intracellular or extracellular levels.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"production of molecular mediator involved in inflammatory response","termid":"GO:0002532"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"arachidonic acid metabolite production involved in inflammatory response","synonyms":[{"name":"arachidonic acid metabolite production involved in acute inflammatory response","type":"broad"},{"name":"production of arachidonic acid metabolites involved in acute inflammatory response","type":"broad"},{"name":"production of arachidonic acid metabolites involved in inflammatory response","type":"exact"}],"termid":"GO:0002538"}


id: FYPO:0007369
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell's redox status differs from normal, as measured by the ratios of reduced to oxidized forms of one or more metabolites (e.g. NAD+:NADH).","definition_xrefs":["PomBase:mah","PMID:32319721"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vegetative cell phenotype","termid":"FYPO:0003755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"altered cellular redox status","termid":"FYPO:0007369"}


id: PBO:0073803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 6 member 9","termid":"PBO:0073803"}


id: _global:assayed_using
data:
  {"annotation_feature_type":"gene","cv_name":"fypo_extension_relations","definition":"Relation between a phenotype and an entity, such as a gene product that acts as an enzyme or substrate, with which the phenotype was assayed.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"assayed_using","termid":"_global:assayed_using"}


id: GO:0102720
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + benzyl alcohol = benzyl acetate + CoA. Also converts (E)-cinnamyl alcohol into (E)-cinnamyl acetate.","definition_xrefs":["EC:2.3.1.224"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016746"],"is_obsolete":false,"name":"acetyl-coenzyme A:acetyl alcohol acetyltransferase activity","termid":"GO:0102720"}


id: GO:0035992
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to a tendon. This process pertains to the initial formation of a tendon from unspecified parts.","definition_xrefs":["GOC:yaf","UBERON:0000043","PMID:17567668"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"tendon development","termid":"GO:0035989"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tendon formation","termid":"GO:0035992"}


id: PBO:0090168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein phosphatase PP2C catalytic subunit Ptc2","termid":"PBO:0090168"}


id: PBO:0062916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purinergic receptor P2X 7","termid":"PBO:0062916"}


id: PBO:0065210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA processing factor 40 homolog B","termid":"PBO:0065210"}


id: PBO:0074584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 2C","termid":"PBO:0074584"}


id: GO:0050027
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: L-idonate + NADP+ = 5-dehydro-D-gluconate + NADPH.","definition_xrefs":["MetaCyc:L-IDONATE-2-DEHYDROGENASE-RXN"],"gene_count":0,"genotype_count":0,"name":"obsolete L-idonate 2-dehydrogenase activity (obsolete GO:0050027)","secondary_identifiers":["EC:1.1.1.128"],"synonyms":[{"name":"5-keto-D-gluconate 2-reductase activity","type":"related"},{"name":"5-ketogluconate 2-reductase activity","type":"related"},{"name":"5-ketoglucono-idono-reductase activity","type":"related"},{"name":"5KGR","type":"related"},{"name":"L-idonate 2-dehydrogenase activity","type":"exact"},{"name":"L-idonate dehydrogenase activity","type":"related"},{"name":"L-idonate:NADP+ 2-oxidoreductase activity","type":"related"},{"name":"reductase, 5-ketogluconate 5- (L-idonate-forming)","type":"related"}],"termid":"GO:0050027"}


id: PBO:0082005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger SWIM-type containing 5 pseudogene 1","termid":"PBO:0082005"}


id: FYPO:0004103
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is viable, and shaped in the form of a sphere.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"spherical vegetative cell","termid":"FYPO:0000129"},{"relation_name":"is_a","term_name":"spherical vegetative cell","termid":"FYPO:0000129"},{"relation_name":"is_a","term_name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000004","FYPO:0000005","FYPO:0001320"],"is_obsolete":false,"name":"viable spherical vegetative cell","synonyms":[{"name":"spherical viable cell","type":"exact"},{"name":"viable spherical cell","type":"exact"},{"name":"viable spherical cell during vegetative growth","type":"exact"},{"name":"viable spherical vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004103"}


id: PBO:0047664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FKBP prolyl isomerase like","termid":"PBO:0047664"}


id: PBO:0076519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 22 pseudogene","termid":"PBO:0076519"}


id: PBO:0030059
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_phosphorylation_during_vegetative_growth","termid":"PBO:0030059"}


id: FYPO:0001813
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to N-methyl-N'-nitro-N-nitrosoguanidine. Cells stop growing (and may die) at a concentration of N-methyl-N'-nitro-N-nitrosoguanidine that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002683","FYPO:0001985","FYPO:0005447","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to N-methyl-N'-nitro-N-nitrosoguanidine","synonyms":[{"name":"hypersensitive to N-methyl-N'-nitro-N-nitrosoguanidine","type":"exact"},{"name":"sensitive to MNNG","type":"exact"},{"name":"sensitive to N-methyl-N'-nitro-N-nitrosoguanidine during mitotic cell cycle","type":"related"},{"name":"sensitive to N-methyl-N'-nitro-N-nitrosoguanidine during vegetative growth","type":"exact"},{"name":"sensitive to nitrosoguanidine","type":"exact"}],"termid":"FYPO:0001813"}


id: GO:0099585
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which calcium ions sequestered in the endoplasmic reticulum, Golgi apparatus or mitochondria are released into the presynaptic cytosol.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"release of sequestered calcium ion into cytosol","termid":"GO:0051209"},{"relation_name":"is_a","term_name":"establishment of localization in cell","termid":"GO:0051649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"release of sequestered calcium ion into presynaptic cytosol","termid":"GO:0099585"}


id: GO:0016101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving diterpenoid compounds, terpenoids with four isoprene units.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpenoid metabolic process","termid":"GO:0006721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"diterpenoid metabolic process","synonyms":[{"name":"diterpene metabolic process","type":"narrow"},{"name":"diterpene metabolism","type":"narrow"},{"name":"diterpenoid metabolism","type":"exact"}],"termid":"GO:0016101"}


id: PBO:0043843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CPVL antisense RNA 1","termid":"PBO:0043843"}


id: PBO:0056357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule associated protein 10","termid":"PBO:0056357"}


id: MOD:00052
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to N-acetyl-L-cysteine.","definition_xrefs":["PubMed:15350136","ChEBI:28939","PubMed:11857757","PubMed:12175151","PubMed:1500421","RESID:AA0043","PubMed:6725286","PubMed:14730666","PubMed:11999733"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylated L-cysteine","termid":"MOD:00646"},{"relation_name":"is_a","term_name":"alpha-amino acetylated residue","termid":"MOD:01458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N-acetyl-L-cysteine","synonyms":[{"name":"(2R)-2-acetamido-3-sulfanylpropanoic acid","type":"exact"},{"name":"2-acetylamino-3-mercaptopropanoic acid","type":"exact"},{"name":"2-acetylamino-3-sulfanylpropanoic acid","type":"exact"},{"name":"2-acetylazanyl-3-sulfanylpropanoic acid","type":"exact"},{"name":"Acetyl","type":"related"},{"name":"MOD_RES N-acetylcysteine","type":"exact"},{"name":"N-acetyl-L-cysteine","type":"exact"},{"name":"N-acetylated cysteine","type":"exact"},{"name":"N-acetylcysteine","type":"exact"},{"name":"NAcCys","type":"exact"}],"termid":"MOD:00052"}


id: PBO:0051303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1D-43","termid":"PBO:0051303"}


id: PBO:0004699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA snR61","termid":"PBO:0004699"}


id: PBO:0074272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"schlafen family member 13","termid":"PBO:0074272"}


id: PBO:0090186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein Crt10, involved in ribosomal RNA decay","termid":"PBO:0090186"}


id: PBO:0066895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 195","termid":"PBO:0066895"}


id: GO:0005367
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: myo-inositol(out) + Na+(out) = myo-inositol(in) + Na+(in).","definition_xrefs":["TC:2.A.21.4.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myo-inositol transmembrane transporter activity","termid":"GO:0005365"},{"relation_name":"is_a","term_name":"solute:sodium symporter activity","termid":"GO:0015370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"myo-inositol:sodium symporter activity","secondary_identifiers":["Reactome:R-HSA-429663"],"synonyms":[{"name":"myo-inositol-sodium cotransporter activity","type":"broad"}],"termid":"GO:0005367"}


id: GO:0070729
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a cyclic nucleotide, any nucleotide in which phosphate group is in diester linkage to two positions on the sugar residue, into, out of or within a cell.","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide transport","termid":"GO:0006862"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"cyclic nucleotide transport","termid":"GO:0070729"}


id: PBO:0073270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 7 pseudogene 14","termid":"PBO:0073270"}


id: GO:0102082
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4'-demethylrebeccamycin + S-adenosyl-L-methionine = H+ + rebeccamycin + S-adenosyl-L-homocysteine.","definition_xrefs":["EC:2.1.1.164","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016741"],"is_obsolete":false,"name":"demethylrebeccamycin--D-glucose O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-10847","RHEA:27353"],"termid":"GO:0102082"}


id: GO:0006605
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  {"annotated_genes":["SJAG_01120","SJAG_01597","SJAG_01684","SJAG_02917","SJAG_04432","SJAG_02397","SJAG_04533","SJAG_01615","SJAG_01782","SJAG_02320","SJAG_02693","SJAG_05259","SJAG_01951","SJAG_00064","SJAG_01360","SJAG_02398","SJAG_01640","SJAG_03648","SJAG_01641","SJAG_05210","SJAG_03385","SJAG_00380","SJAG_03515","SJAG_02208","SJAG_01229","SJAG_02034","SJAG_00108","SJAG_00687","SJAG_01840","SJAG_01759","SJAG_04129","SJAG_01750","SJAG_00181","SJAG_00895","SJAG_01949","SJAG_04336","SJAG_00564","SJAG_02867","SJAG_01282","SJAG_03358","SJAG_00208","SJAG_01349","SJAG_02456","SJAG_01981","SJAG_03976","SJAG_00959","SJAG_04552","SJAG_00196","SJAG_03684","SJAG_03250","SJAG_03737","SJAG_00360","SJAG_01004","SJAG_03416","SJAG_03315","SJAG_01112","SJAG_04451","SJAG_00891","SJAG_04763","SJAG_00204","SJAG_02809","SJAG_02354","SJAG_01299","SJAG_01088","SJAG_02077","SJAG_03560","SJAG_00603","SJAG_02524","SJAG_00373","SJAG_01442","SJAG_01879","SJAG_02355","SJAG_01780","SJAG_04996","SJAG_00326","SJAG_00404","SJAG_02588","SJAG_07010","SJAG_00175","SJAG_03415","SJAG_16459","SJAG_03411","SJAG_03955","SJAG_03970","SJAG_02797","SJAG_01560","SJAG_02361","SJAG_04641","SJAG_03781","SJAG_01488","SJAG_01558","SJAG_04014","SJAG_00569","SJAG_02330","SJAG_01733","SJAG_01496","SJAG_03396","SJAG_04218","SJAG_04208","SJAG_01281","SJAG_03502"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94018],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006613"},{"annotations":[84228,87737,84151,101828,110516,84264,87174,87604,109383],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120113"},{"annotations":[84065,91843,105707],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006620"},{"annotations":[93446,104387,105414,86699,94156,102242,106480],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031204"},{"annotations":[105841,94593,84473],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045041"},{"annotations":[96413,102249,84474,107875,103673,95339,113306,98787,99380,85664,101262,103650,111296,95634,87009,95524,112853,103590,90623,92987,105955],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030150"},{"annotations":[88885,95525,86511,103591,109274,103651,103674,103373,112339,84796,99017],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045039"},{"annotations":[106484,87019,94334,106474,86491,94682,106124,107869,103652],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045040"},{"annotations":[105270,109267,88406,98305,101661,104155],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006627"},{"annotations":[100569,83789,108635,94694,94521,94469],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045047"},{"annotations":[59863,104358,93137,92001,106227,99203,103379],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006612"},{"annotations":[94502],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006626"},{"annotations":[99186,86542,91533,86550,93061],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006625"},{"annotations":[86301,88219,93505,85041,100162,97219,98229,102815,100142],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006623"},{"annotations":[111997,112716,90385,86941,105708,105832],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006614"},{"annotations":[87730,110436,111196],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006617"},{"annotations":[104389,102244,111998,94158,98675,105416],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006616"}]},"cv_name":"biological_process","definition":"The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.","definition_xrefs":["GOC:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of protein localization","termid":"GO:0045184"}],"gene_count":101,"genes_by_uniquename":{"SJAG_00064":null,"SJAG_00108":null,"SJAG_00175":null,"SJAG_00181":null,"SJAG_00196":null,"SJAG_00204":null,"SJAG_00208":null,"SJAG_00326":null,"SJAG_00360":null,"SJAG_00373":null,"SJAG_00380":null,"SJAG_00404":null,"SJAG_00564":null,"SJAG_00569":null,"SJAG_00603":null,"SJAG_00687":null,"SJAG_00891":null,"SJAG_00895":null,"SJAG_00959":null,"SJAG_01004":null,"SJAG_01088":null,"SJAG_01112":null,"SJAG_01120":null,"SJAG_01229":null,"SJAG_01281":null,"SJAG_01282":null,"SJAG_01299":null,"SJAG_01349":null,"SJAG_01360":null,"SJAG_01442":null,"SJAG_01488":null,"SJAG_01496":null,"SJAG_01558":null,"SJAG_01560":null,"SJAG_01597":null,"SJAG_01615":null,"SJAG_01640":null,"SJAG_01641":null,"SJAG_01684":null,"SJAG_01733":null,"SJAG_01750":null,"SJAG_01759":null,"SJAG_01780":null,"SJAG_01782":null,"SJAG_01840":null,"SJAG_01879":null,"SJAG_01949":null,"SJAG_01951":null,"SJAG_01981":null,"SJAG_02034":null,"SJAG_02077":null,"SJAG_02208":null,"SJAG_02320":null,"SJAG_02330":null,"SJAG_02354":null,"SJAG_02355":null,"SJAG_02361":null,"SJAG_02397":null,"SJAG_02398":null,"SJAG_02456":null,"SJAG_02524":null,"SJAG_02588":null,"SJAG_02693":null,"SJAG_02797":null,"SJAG_02809":null,"SJAG_02867":null,"SJAG_02917":null,"SJAG_03250":null,"SJAG_03315":null,"SJAG_03358":null,"SJAG_03385":null,"SJAG_03396":null,"SJAG_03411":null,"SJAG_03415":null,"SJAG_03416":null,"SJAG_03502":null,"SJAG_03515":null,"SJAG_03560":null,"SJAG_03648":null,"SJAG_03684":null,"SJAG_03737":null,"SJAG_03781":null,"SJAG_03955":null,"SJAG_03970":null,"SJAG_03976":null,"SJAG_04014":null,"SJAG_04129":null,"SJAG_04208":null,"SJAG_04218":null,"SJAG_04336":null,"SJAG_04432":null,"SJAG_04451":null,"SJAG_04533":null,"SJAG_04552":null,"SJAG_04641":null,"SJAG_04763":null,"SJAG_04996":null,"SJAG_05210":null,"SJAG_05259":null,"SJAG_07010":null,"SJAG_16459":null},"genotype_count":0,"in_subsets":["bp_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein targeting","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Protein_targeting"],"synonyms":[{"name":"nascent polypeptide association","type":"related"},{"name":"protein sorting along secretory pathway","type":"narrow"}],"termid":"GO:0006605","terms_by_termid":{"GO:0006612":null,"GO:0006613":null,"GO:0006614":null,"GO:0006616":null,"GO:0006617":null,"GO:0006620":null,"GO:0006623":null,"GO:0006625":null,"GO:0006626":null,"GO:0006627":null,"GO:0030150":null,"GO:0031204":null,"GO:0045039":null,"GO:0045040":null,"GO:0045041":null,"GO:0045047":null,"GO:0120113":null}}


id: PBO:0088520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial carrier, 2-oxoadipate/2-oxoglutarate","termid":"PBO:0088520"}


id: PBO:0026793
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-septated_spheroid_vegetative_cell","termid":"PBO:0026793"}


id: GO:0047810
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-alanine + 2-oxoglutarate = pyruvate + D-glutamate.","definition_xrefs":["EC:2.6.1.21"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016769","GO:0003824"],"is_obsolete":false,"name":"D-alanine-2-oxoglutarate aminotransferase activity","secondary_identifiers":["RHEA:15869","MetaCyc:D-ALANINE-AMINOTRANSFERASE-RXN"],"synonyms":[{"name":"D-alanine aminotransferase activity","type":"exact"},{"name":"D-alanine transaminase activity","type":"broad"},{"name":"D-alanine-D-glutamate transaminase activity","type":"related"},{"name":"D-amino acid aminotransferase activity","type":"broad"},{"name":"D-amino acid transaminase activity","type":"broad"},{"name":"D-amino-acid transaminase activity","type":"broad"},{"name":"D-aspartate aminotransferase activity","type":"related"},{"name":"D-aspartate transaminase activity","type":"related"},{"name":"D-aspartic aminotransferase activity","type":"related"}],"termid":"GO:0047810"}


id: GO:0014801
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the free sarcoplasmic reticulum consisting of longitudinal tubules that connect terminal cisternae.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"sarcoplasmic reticulum","termid":"GO:0016529"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005783","GO:0005575"],"is_obsolete":false,"name":"longitudinal sarcoplasmic reticulum","termid":"GO:0014801"}


id: PBO:0052554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"killer cell lectin like receptor F1","termid":"PBO:0052554"}


id: MOD:00055
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a glycine residue to N-acetylglycine.","definition_xrefs":["PubMed:6754709","PubMed:272676","PubMed:5545094","RESID:AA0046"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified glycine residue","termid":"MOD:00908"},{"relation_name":"is_a","term_name":"alpha-amino acetylated residue","termid":"MOD:01458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N-acetylglycine","synonyms":[{"name":"(acetylamino)acetic acid","type":"exact"},{"name":"(acetylazanyl)ethanoic acid","type":"exact"},{"name":"2-(acetamido)ethanoic acid","type":"exact"},{"name":"2-(acetylamino)ethanoic acid","type":"exact"},{"name":"AcGly","type":"exact"},{"name":"MOD_RES N-acetylglycine","type":"exact"},{"name":"N-acetylated glycine","type":"exact"},{"name":"N-acetylglycine","type":"exact"},{"name":"aceturic acid","type":"exact"}],"termid":"MOD:00055"}


id: MOD:00742
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a copper atom or a cluster containing copper for hydrogen atoms, or that coordinates a copper ion.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal or metal cluster containing modified residue","termid":"MOD:00698"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copper containing modified residue","synonyms":[{"name":"CuRes","type":"exact"}],"termid":"MOD:00742"}


id: GO:0005181
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete glycopeptide hormone (obsolete GO:0005181)","synonyms":[{"name":"glycopeptide hormone","type":"exact"}],"termid":"GO:0005181"}


id: GO:0052175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism involving carbohydrates within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete metabolism by symbiont of host carbohydrate (obsolete GO:0052175)","termid":"GO:0052175"}


id: GO:0045095
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins.","definition_xrefs":["ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intermediate filament","termid":"GO:0005882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"keratin filament","synonyms":[{"name":"acidic keratin","type":"related"},{"name":"basic/neutral keratin","type":"related"}],"termid":"GO:0045095"}


id: GO:0039687
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A viral DNA replication process where only one strand is replicated at once, and which releases a single stranded DNA (ssDNA).","definition_xrefs":["VZ:1940","GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral DNA genome replication","termid":"GO:0039693"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"viral DNA strand displacement replication","termid":"GO:0039687"}


id: PBO:0062953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A) binding protein cytoplasmic 1","termid":"PBO:0062953"}


id: GO:0050498
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and the latter donor is dehydrogenated.","definition_xrefs":["EC:1.14.20.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, with 2-oxoglutarate as one donor, and the other dehydrogenated","termid":"GO:0050498"}


id: MOD:00572
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:343","PubMed:15828771","PubMed:15174056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxidized arginine biotinylated with biotin hydrazide","synonyms":[{"name":"Argbiotinhydrazide","type":"related"},{"name":"oxidized Arginine biotinylated with biotin hydrazide","type":"related"}],"termid":"MOD:00572"}


id: FYPO:0003661
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of double-strand break repair via nonhomologous end joining (NHEJ) is abnormal. NHEJ is the repair of double-strand breaks in DNA in which the two broken ends are rejoined with little or no sequence complementarity.","definition_xrefs":["GO:0006303","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal double-strand break repair during vegetative growth","termid":"FYPO:0000777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000298","FYPO:0001320","FYPO:0000293","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal double-strand break repair via nonhomologous end joining","synonyms":[{"name":"abnormal NHEJ","type":"exact"},{"name":"abnormal double-strand break repair via nonhomologous end joining during mitotic cell cycle","type":"related"},{"name":"abnormal double-strand break repair via nonhomologous end joining during vegetative growth","type":"exact"},{"name":"abnormal nonhomologous end joining","type":"exact"}],"termid":"FYPO:0003661"}


id: MOD:01787
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links two L-tyrosine residues through their 5' positions by amine nitrogen to form 5'-(L-tyros-5'-yl)amino-L-tyrosine.","definition_xrefs":["PubMed:18781570","RESID:AA0459"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uncategorized crosslinked residues","termid":"MOD:00692"},{"relation_name":"is_a","term_name":"crosslinked L-tyrosine residue","termid":"MOD:02058"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-(L-tyros-5'-yl)amino-L-tyrosine","synonyms":[{"name":"(2S,2'S)-3,3'-[iminobis(4-hydroxybenzene-3,1-diyl)]bis(2-aminopropanoic acid)","type":"exact"},{"name":"5'-(L-tyros-5'-yl)amino-L-tyrosine","type":"exact"},{"name":"5'-[(tyros-5'-yl)amino]tyrosine","type":"exact"},{"name":"5'-tyrosyl-5'-aminotyrosine","type":"exact"},{"name":"CROSSLNK 5'-tyrosyl-5'-aminotyrosine (Tyr-Tyr) (interchain)","type":"exact"},{"name":"bis(LTQ) linkage","type":"exact"}],"termid":"MOD:01787"}


id: FYPO:0000183
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transport phenotype observed in the vegetative growth phase of the life cycle in which the export of polyadenylated mRNA from the nucleus is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mRNA export from nucleus","termid":"FYPO:0000204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0006551","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal poly(A)+ mRNA export from nucleus","synonyms":[{"name":"abnormal poly(A)+ mRNA export from nucleus during mitotic cell cycle","type":"related"},{"name":"abnormal poly(A)+ mRNA export from nucleus during vegetative growth","type":"exact"},{"name":"abnormal polyadenylated mRNA export from nucleus","type":"exact"}],"termid":"FYPO:0000183"}


id: PBO:0071355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L29 pseudogene 14","termid":"PBO:0071355"}


id: PBO:0043298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-type lectin domain containing 17A","termid":"PBO:0043298"}


id: GO:2000153
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of flagellar cell motility.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of flagellar cell motility (obsolete GO:2000153)","synonyms":[{"name":"regulation of flagellar cell motility","type":"exact"}],"termid":"GO:2000153"}


id: PBO:0057854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3165","termid":"PBO:0057854"}


id: PBO:0059849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 2","termid":"PBO:0059849"}


id: PBO:0058528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6073","termid":"PBO:0058528"}


id: PBO:0090552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongator complex subunit Elp5","termid":"PBO:0090552"}


id: PBO:0091831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF2427 family conserved fungal protein","termid":"PBO:0091831"}


id: PBO:0045908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EF-hand calcium binding domain 6","termid":"PBO:0045908"}


id: PBO:0071041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 43","termid":"PBO:0071041"}


id: PR:P05511
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPMIT.06 gene.","definition_xrefs":["UniProtKB:P05511","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized 91 kDa protein in cob intron (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPMIT.06","synonyms":[{"name":"Spom972h-SPMIT.06","type":"exact"}],"termid":"PR:P05511"}


id: PBO:0074377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMG1 pseudogene 3","termid":"PBO:0074377"}


id: GO:0045862
data:
  {"annotated_genes":["SJAG_03699","SJAG_01131","SJAG_01544","SJAG_03048","SJAG_04477","SJAG_00712","SJAG_00766","SJAG_00071","SJAG_01489","SJAG_01210","SJAG_00642","SJAG_02723"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85079],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905786"},{"annotations":[60868,66434,64856,66480,67394,67801],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901800"},{"annotations":[98480,107788,102732,104970,113134],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032436"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of proteolysis","termid":"GO:0030162"},{"relation_name":"is_a","term_name":"positive regulation of protein metabolic process","termid":"GO:0051247"},{"relation_name":"positively_regulates","term_name":"proteolysis","termid":"GO:0006508"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00071":null,"SJAG_00642":null,"SJAG_00712":null,"SJAG_00766":null,"SJAG_01131":null,"SJAG_01210":null,"SJAG_01489":null,"SJAG_01544":null,"SJAG_02723":null,"SJAG_03048":null,"SJAG_03699":null,"SJAG_04477":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of proteolysis","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"activation of proteolysis","type":"narrow"},{"name":"positive regulation of peptidolysis","type":"exact"},{"name":"stimulation of proteolysis","type":"narrow"},{"name":"up regulation of proteolysis","type":"exact"},{"name":"up-regulation of proteolysis","type":"exact"},{"name":"upregulation of proteolysis","type":"exact"}],"termid":"GO:0045862","terms_by_termid":{"GO:0032436":null,"GO:1901800":null,"GO:1905786":null}}


id: PATO:0001393
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A ploidy quality inhering in a bearer by virtue of the bearer's containing an integral multiple of the monoploid number, possibly excluding the sex-determining chromosomes.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Euploid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ploidy","termid":"PATO:0001374"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"euploid","termid":"PATO:0001393"}


id: PR:Q10243
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A vacuolar protein sorting-associated protein 26B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00942","PANTHER:PTHR12233:SF1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting-associated protein 26 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4G9.13c","secondary_identifiers":["UniProtKB:Q10243"],"synonyms":[{"name":"Spom972h-VPS26B","type":"exact"}],"termid":"PR:Q10243"}


id: PBO:0040945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 interacting protein 3 pseudogene 16","termid":"PBO:0040945"}


id: MOD:00228
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-diphytanylglycerol diether-L-cysteine.","definition_xrefs":["RESID:AA0223","Unimod:410","PubMed:8195126","PubMed:7797461"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"},{"relation_name":"is_a","term_name":"lipoconjugated residue","termid":"MOD:01155"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-diphytanylglycerol diether-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-([(2S)-2,3-bis(3,7,11,15-tetramethylhexadecanyloxy)propyl]sulfanyl)propanoic acid","type":"exact"},{"name":"Archaeol","type":"related"},{"name":"LIPID S-archaeol cysteine","type":"exact"},{"name":"S-(diphytanylglyceryl)-L-cysteine","type":"exact"},{"name":"S-[2',3'-bis(phytanyloxy)propyl]cysteine","type":"exact"},{"name":"S-archaeol cysteine","type":"exact"},{"name":"S-diphytanylglycerol diether","type":"related"},{"name":"SPhyt2GlyceroCys","type":"exact"}],"termid":"MOD:00228"}


id: GO:0043955
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-hydroxypropionate + ATP + CoA = 3-hydroxypropionyl-CoA + AMP + diphosphate.","definition_xrefs":["GOC:jl","PMID:11821399"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"},{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016874"],"is_obsolete":false,"name":"3-hydroxypropionyl-CoA synthetase activity","secondary_identifiers":["EC:6.2.1.36","RHEA:26534"],"synonyms":[{"name":"3-hydroxy propionyl-CoA synthetase activity","type":"exact"},{"name":"AMP-dependent synthetase and ligase","type":"broad"},{"name":"AMP-dependent synthetase and ligase:Enoyl-CoA hydratase/isomerase","type":"broad"},{"name":"acetyl-coenzyme A synthetase","type":"broad"},{"name":"acetyl-coenzyme A synthetase/GroES-like domain","type":"narrow"},{"name":"enoyl-CoA hydratase/isomerase","type":"broad"}],"termid":"GO:0043955"}


id: PBO:0004450
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pcl-Seven like Cyclin","termid":"PBO:0004450"}


id: PBO:0059799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 25","termid":"PBO:0059799"}


id: PBO:0064142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PKN2 antisense RNA 1","termid":"PBO:0064142"}


id: GO:0071837
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an HMG box domain, a protein domain that consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin.","definition_xrefs":["GOC:yaf","InterPro:IPR009071","PMID:18445004"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"HMG box domain binding","termid":"GO:0071837"}


id: PBO:0087762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of TORC1 (Tor1p or Tor2p-Kog1p-Lst8p-Tco89p); regulates global H3K56ac; TORC1 complex regulates growth in response to nutrient availability; cooperates with Ssd1p in the maintenance of cellular integrity; deletion strains are hypersensitive to rapamycin","termid":"PBO:0087762"}


id: PBO:0060176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metaxin 1","termid":"PBO:0060176"}


id: GO:0008950
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:krc"],"gene_count":0,"genotype_count":0,"name":"obsolete p-aminobenzoate synthetase (obsolete GO:0008950)","synonyms":[{"name":"p-aminobenzoate synthetase","type":"exact"}],"termid":"GO:0008950"}


id: FYPO:0005875
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"Auxotrophy in which a cell is unable to synthesize proline, and therefore requires proline in the medium for vegetative cell growth.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxotrophy","termid":"FYPO:0000128"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype","termid":"FYPO:0004638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"growth auxotrophic for proline","synonyms":[{"name":"growth auxotrophic for proline during mitotic cell cycle","type":"related"},{"name":"growth auxotrophic for proline during vegetative growth","type":"exact"},{"name":"proline auxotrophy","type":"exact"}],"termid":"FYPO:0005875"}


id: PBO:0087027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L13A; not essential for viability; homologous to mammalian ribosomal protein L13, no bacterial homolog; RPL13A has a paralog, RPL13B, that arose from the whole genome duplication","termid":"PBO:0087027"}


id: PBO:0072482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 11","termid":"PBO:0072482"}


id: SO:0002116
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A processed transcript that does not contain a CDS that fullfills annotation criteria and not necessarily functionally non-coding.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pseudogene_processed_transcript","termid":"SO:0002111"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polymorphic_pseudogene_processed_transcript","synonyms":[{"name":"polymorphic pseudogene processed transcript","type":"exact"}],"termid":"SO:0002116"}


id: GO:0001544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Increase in size of primordial follicles including proliferation and shape changes of granulosa and/or theca cells until oocyte is surrounded by one layer of cuboidal shaped granulosa cells (primary follicle).","direct_ancestors":[{"relation_name":"is_a","term_name":"ovulation cycle process","termid":"GO:0022602"},{"relation_name":"part_of","term_name":"ovarian follicle development","termid":"GO:0001541"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"initiation of primordial ovarian follicle growth","termid":"GO:0001544"}


id: GO:0043676
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The layer of sexine which forms a roof over the columella, granules or other infratectal elements.","definition_xrefs":["PMID:33706055"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"sexine","termid":"GO:0043673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"tectum","synonyms":[{"name":"sexine 2","type":"exact"}],"termid":"GO:0043676"}


id: PBO:0040130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ASB15 antisense RNA 1","termid":"PBO:0040130"}


id: PBO:0004074
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rictor homolog, Ste20","termid":"PBO:0004074"}


id: PBO:0049791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA complex group 26","termid":"PBO:0049791"}


id: PBO:0085058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nonessential serine/threonine protein kinase; possible role in DNA damage response; influences tolerance to high levels of ethanol","termid":"PBO:0085058"}


id: GO:0035852
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a horizontal cell is transported to, and/or maintained in, a specific location within the inner nuclear layer (INL) of the retina. A horizontal cell is a neuron that laterally connects other neurons in the inner nuclear layer (INL) of the retina. Targeting of retinal neurons to the appropriate lamina is vital to establish the architecture of the retina.","definition_xrefs":["CL:0000745","GOC:bf","GOC:yaf","PMID:18094249"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization of cell","termid":"GO:0051674"},{"relation_name":"part_of","term_name":"retina layer formation","termid":"GO:0010842"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"horizontal cell localization","synonyms":[{"name":"horizontal cell localisation","type":"exact"},{"name":"horizontal cell positioning","type":"exact"},{"name":"laminar positioning of retinal horizontal cell","type":"exact"},{"name":"retinal horizontal cell positioning","type":"exact"}],"termid":"GO:0035852"}


id: PBO:0029596
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_plasma_membrane_during_vegetative_growth","termid":"PBO:0029596"}


id: FYPO:0004695
data:
  {"alleles_by_uniquename":{"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115402],"is_not":false,"summary":null,"term":"FYPO:0004695"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more diglycerides measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00426":null},"genotype_count":1,"genotypes_by_uniquename":{"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"bbl1-P363S(aa)","display_uniquename":"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00426:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular diglyceride level","references_by_uniquename":{"PMID:25318672":null},"single_locus_annotated_genes":["SJAG_00426"],"single_locus_genotype_uniquenames":["bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"increased cellular DAG level","type":"exact"},{"name":"increased cellular diacylglycerol level","type":"exact"},{"name":"increased cellular diglyceride level during mitotic cell cycle","type":"related"},{"name":"increased cellular diglyceride level during vegetative growth","type":"exact"},{"name":"increased diglyceride accumulation","type":"related"}],"termid":"FYPO:0004695","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000006":null,"FYECO:0000162":null,"FYPO:0004695":null}}


id: PBO:0077353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM92 antisense RNA 1","termid":"PBO:0077353"}


id: GO:0070920
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of regulatory non-coding RNA processing.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gene silencing by regulatory ncRNA","termid":"GO:0060966"},{"relation_name":"is_a","term_name":"regulation of primary metabolic process","termid":"GO:0080090"},{"relation_name":"regulates","term_name":"regulatory ncRNA processing","termid":"GO:0070918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of regulatory ncRNA processing","synonyms":[{"name":"regulation of gene silencing by RNA, production of guide RNA","type":"exact"},{"name":"regulation of gene silencing by RNA, production of small RNA","type":"exact"},{"name":"regulation of production of small RNA involved in gene silencing by RNA","type":"narrow"}],"termid":"GO:0070920"}


id: PBO:0070011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1308, pseudogene","termid":"PBO:0070011"}


id: PBO:0081719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 648","termid":"PBO:0081719"}


id: GO:0051043
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the proteolytic cleavage of transmembrane proteins and release of their ectodomain (extracellular domain).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of proteolysis","termid":"GO:0030162"},{"relation_name":"is_a","term_name":"regulation of cellular catabolic process","termid":"GO:0031329"},{"relation_name":"is_a","term_name":"regulation of protein catabolic process","termid":"GO:0042176"},{"relation_name":"regulates","term_name":"membrane protein ectodomain proteolysis","termid":"GO:0006509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0030163","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"regulation of membrane protein ectodomain proteolysis","termid":"GO:0051043"}


id: GO:0047408
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + 1-(1-alkenyl)-sn-glycero-3-phosphocholine = L-1-glycero-3-phosphocholine + an aldehyde.","definition_xrefs":["MetaCyc:3.3.2.2-RXN","EC:3.3.2.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ether hydrolase activity","termid":"GO:0016803"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"alkenylglycerophosphocholine hydrolase activity","secondary_identifiers":["RHEA:22544"],"synonyms":[{"name":"1-(1-alkenyl)-sn-glycero-3-phosphocholine aldehydohydrolase activity","type":"related"},{"name":"lysoplasmalogenase activity","type":"related"}],"termid":"GO:0047408"}


id: PR:Q9UU76
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- puf6 gene.","definition_xrefs":["UniProtKB:Q9UU76","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pumilio homology domain family member 6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCP1E11.11","synonyms":[{"name":"Spom972h-puf6","type":"exact"}],"termid":"PR:Q9UU76"}


id: PBO:0036353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic translation release factor class I eRF1","termid":"PBO:0036353"}


id: PBO:0057524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 642a","termid":"PBO:0057524"}


id: PBO:0059591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 3","termid":"PBO:0059591"}


id: GO:0021769
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the orbitofrontal cortex over time from its initial formation until its mature state. The orbitofrontal cortex is a cerebral cortex region located in the frontal lobe.","definition_xrefs":["GOC:jid","GOC:dgh","GOC:dph","GO_REF:0000021","ISBN:0878937420","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"limbic system development","termid":"GO:0021761"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"orbitofrontal cortex development","termid":"GO:0021769"}


id: PBO:0054269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1655","termid":"PBO:0054269"}


id: FYECO:0000302
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which ammonium iron(2+) sulfate (ferrous ammonium sulfate) was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ ammonium iron(2+) sulfate","synonyms":[{"name":"+ ferrous ammonium sulfate (anhydrous)","type":"related"}],"termid":"FYECO:0000302"}


id: PR:Q10356
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein DJ-1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02092","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione-independent glyoxalase DJ-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22E12.03c","secondary_identifiers":["UniProtKB:Q10356"],"synonyms":[{"name":"Spom972h-PARK7","type":"exact"},{"name":"heat shock protein 31 homolog 6 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"protein DJ-1 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10356"}


id: GO:0031523
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multisubunit complex consisting of Myb and other proteins that regulates site specific DNA replication, gene amplification and transcriptional repression.","definition_xrefs":["PMID:12490953","PMID:15545624"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"Myb complex","synonyms":[{"name":"Myeloblastosis proto-oncogene protein complex","type":"exact"}],"termid":"GO:0031523"}


id: GO:0001093
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a general RNA polymerase II transcription factor of the TFIIB class, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II.","definition_xrefs":["GOC:krc","PMID:16858867"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II general transcription initiation factor binding","termid":"GO:0001091"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"TFIIB-class transcription factor binding","termid":"GO:0001093"}


id: SO:0001203
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region (DNA) to which RNA polymerase binds, to begin transcription.","definition_xrefs":["xenbase:jb"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0001203 RNA_polymerase_promoter (obsolete SO:0001203)","synonyms":[{"name":"RNA polymerase promoter","type":"exact"}],"termid":"SO:0001203"}


id: PBO:0075319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"superoxide dismutase 1 pseudogene 1","termid":"PBO:0075319"}


id: PR:O42977
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rtp1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42977"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II assembly factor rtp1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC20F10.08c","synonyms":[{"name":"Spom972h-rtp1","type":"exact"}],"termid":"PR:O42977"}


id: GO:0039631
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive movement along a single- or double-stranded DNA molecule, that contributes to the packing of viral DNA into a capsid.","definition_xrefs":["GOC:bm","PMID:17501915"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA translocase activity involved in viral DNA genome packaging (obsolete GO:0039631)","synonyms":[{"name":"viral DNA packaging activity","type":"related"},{"name":"viral DNA packaging motor activity","type":"related"}],"termid":"GO:0039631"}


id: GO:0060823
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes that contributes to the formation of the neural plate anterior/posterior pattern.","definition_xrefs":["GOC:dph","GOC:tb","GOC:sdb_2009"],"gene_count":0,"genotype_count":0,"name":"obsolete canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation (obsolete GO:0060823)","synonyms":[{"name":"Wnt receptor signaling pathway through beta-catenin involved in neural plate anterior/posterior pattern formation","type":"exact"},{"name":"canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation","type":"exact"},{"name":"canonical Wnt receptor signalling pathway involved in neural plate anterior/posterior pattern formation","type":"exact"},{"name":"canonical Wnt-activated signaling pathway involved in neural plate anterior/posterior pattern formation","type":"exact"}],"termid":"GO:0060823"}


id: GO:0048398
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into an intermediate mesoderm cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesodermal cell fate specification","termid":"GO:0007501"},{"relation_name":"part_of","term_name":"intermediate mesodermal cell fate commitment","termid":"GO:0048393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intermediate mesodermal cell fate specification","synonyms":[{"name":"intermediate mesoderm cell fate specification","type":"exact"}],"termid":"GO:0048398"}


id: PBO:0004075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAK-related kinase Nak1","termid":"PBO:0004075"}


id: PBO:0041429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 8 open reading frame 76","termid":"PBO:0041429"}


id: PBO:0113562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligosaccharyltransferase complex gamma subunit, Ost3","termid":"PBO:0113562"}


id: PBO:0060066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 13","termid":"PBO:0060066"}


id: PBO:0017060
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biased repeat containing protein - 6 copies of 'WKKAREEDKAE' repeat and 6 copies of a smaller 'WRNSMDE' repeat","termid":"PBO:0017060"}


id: PBO:0056361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase 4","termid":"PBO:0056361"}


id: GO:0043579
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an elaioplast, a leucoplast in which oil is stored.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leucoplast organization","termid":"GO:0009659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"elaioplast organization","synonyms":[{"name":"elaioplast organisation","type":"exact"},{"name":"elaioplast organization and biogenesis","type":"related"}],"termid":"GO:0043579"}


id: PBO:0053607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 640","termid":"PBO:0053607"}


id: GO:0043307
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The change in morphology and behavior of a eosinophil resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"granulocyte activation","termid":"GO:0036230"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"eosinophil activation","termid":"GO:0043307"}


id: GO:0004080
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + biotin + apo-(propanoyl-CoA:carbon-dioxide ligase (ADP-forming)) = AMP + diphosphate + (propanoyl-CoA:carbon-dioxide ligase (ADP-forming)).","definition_xrefs":["GOC:rynl"],"gene_count":0,"genotype_count":0,"name":"obsolete biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity (obsolete GO:0004080)","termid":"GO:0004080"}


id: GO:0006679
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glucosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of glucose by a ceramide group.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosylceramide metabolic process","termid":"GO:0006678"},{"relation_name":"is_a","term_name":"glycosylceramide biosynthetic process","termid":"GO:0046476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"glucosylceramide biosynthetic process","synonyms":[{"name":"glucosylceramide anabolism","type":"exact"},{"name":"glucosylceramide biosynthesis","type":"exact"},{"name":"glucosylceramide formation","type":"exact"},{"name":"glucosylceramide synthesis","type":"exact"}],"termid":"GO:0006679"}


id: PBO:0090210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"box H/ACA snoRNP assembly protein Shq1","termid":"PBO:0090210"}


id: PBO:0029566
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_telomere_structure","termid":"PBO:0029566"}


id: GO:1903048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of acetylcholine-gated cation channel activity.","definition_xrefs":["PMID:21718690","GOC:bf","GOC:TermGenie","GO_REF:0000059","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of excitatory postsynaptic potential","termid":"GO:0098815"},{"relation_name":"is_a","term_name":"regulation of postsynaptic neurotransmitter receptor activity","termid":"GO:0098962"},{"relation_name":"is_a","term_name":"regulation of cation channel activity","termid":"GO:2001257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"regulation of acetylcholine-gated cation channel activity","termid":"GO:1903048"}


id: SO:0100009
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A peptide that acts as a signal for both membrane translocation and lipid attachment in prokaryotes.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cleaved_peptide_region","termid":"SO:0100011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"lipoprotein_signal_peptide","synonyms":[{"name":"lipoprotein signal peptide","type":"exact"},{"name":"prokaryotic membrane lipoprotein lipid attachment site","type":"exact"}],"termid":"SO:0100009"}


id: PBO:0077254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane p24 trafficking protein 5","termid":"PBO:0077254"}


id: PBO:0071522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L34 pseudogene 25","termid":"PBO:0071522"}


id: PBO:0092039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfonate/alpha-ketoglutarate dioxygenase","termid":"PBO:0092039"}


id: GO:0097278
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell killing caused by the membrane attack complex formed following complement activation.","definition_xrefs":["GOC:rv","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell killing","termid":"GO:0001906"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"complement-dependent cytotoxicity","termid":"GO:0097278"}


id: GO:1990660
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex composed of S100A8 and S100A9 and capable of limiting Mn(2+) and Zn(2+) availability at sites of infection. Also binds Ca(2+). Expressed and released by neutrophils and epithelial cells, it exhibits broad-spectrum antimicrobial activity attributed to its metal-binding properties. Endogenous ligand of toll-like receptor 4 (TLR4) and of the receptor for advanced glycation end products (RAGE) initiating signal transduction through NF-kappa-B pathways.","definition_xrefs":["PMID:25417112","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"calprotectin complex","synonyms":[{"name":"calprotectin heterodimer","type":"narrow"}],"termid":"GO:1990660"}


id: PBO:0043561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type V alpha 3 chain","termid":"PBO:0043561"}


id: GO:1901835
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of deadenylation-independent decapping of nuclear-transcribed mRNA.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of mRNA catabolic process","termid":"GO:0061014"},{"relation_name":"is_a","term_name":"regulation of deadenylation-independent decapping of nuclear-transcribed mRNA","termid":"GO:1901834"},{"relation_name":"positively_regulates","term_name":"deadenylation-independent decapping of nuclear-transcribed mRNA","termid":"GO:0031087"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0010467","GO:0016071","GO:0008150"],"is_obsolete":false,"name":"positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA","synonyms":[{"name":"activation of deadenylation-independent decapping of nuclear mRNA","type":"related"},{"name":"activation of deadenylation-independent decapping of nuclear-transcribed mRNA","type":"narrow"},{"name":"activation of deadenylylation-independent decapping","type":"exact"},{"name":"positive regulation of deadenylation-independent decapping of nuclear mRNA","type":"related"},{"name":"positive regulation of deadenylylation-independent decapping","type":"exact"},{"name":"up regulation of deadenylation-independent decapping of nuclear mRNA","type":"related"},{"name":"up regulation of deadenylation-independent decapping of nuclear-transcribed mRNA","type":"exact"},{"name":"up regulation of deadenylylation-independent decapping","type":"exact"},{"name":"up-regulation of deadenylation-independent decapping of nuclear mRNA","type":"related"},{"name":"up-regulation of deadenylation-independent decapping of nuclear-transcribed mRNA","type":"exact"},{"name":"up-regulation of deadenylylation-independent decapping","type":"exact"},{"name":"upregulation of deadenylation-independent decapping of nuclear mRNA","type":"related"},{"name":"upregulation of deadenylation-independent decapping of nuclear-transcribed mRNA","type":"exact"},{"name":"upregulation of deadenylylation-independent decapping","type":"exact"}],"termid":"GO:1901835"}


id: GO:1900103
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of endoplasmic reticulum unfolded protein response.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endoplasmic reticulum unfolded protein response","termid":"GO:1900101"},{"relation_name":"is_a","term_name":"positive regulation of intracellular signal transduction","termid":"GO:1902533"},{"relation_name":"is_a","term_name":"positive regulation of response to endoplasmic reticulum stress","termid":"GO:1905898"},{"relation_name":"positively_regulates","term_name":"endoplasmic reticulum unfolded protein response","termid":"GO:0030968"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of endoplasmic reticulum unfolded protein response","synonyms":[{"name":"activation of ER unfolded protein response","type":"exact"},{"name":"activation of SREBP-mediated signalling pathway","type":"related"},{"name":"activation of endoplasmic reticulum unfolded protein response","type":"narrow"},{"name":"activation of erUPR","type":"exact"},{"name":"positive regulation of ER unfolded protein response","type":"exact"},{"name":"positive regulation of SREBP-mediated signalling pathway","type":"related"},{"name":"positive regulation of erUPR","type":"exact"},{"name":"up regulation of ER unfolded protein response","type":"exact"},{"name":"up regulation of SREBP-mediated signalling pathway","type":"related"},{"name":"up regulation of endoplasmic reticulum unfolded protein response","type":"exact"},{"name":"up regulation of erUPR","type":"exact"},{"name":"up-regulation of ER unfolded protein response","type":"exact"},{"name":"up-regulation of SREBP-mediated signalling pathway","type":"related"},{"name":"up-regulation of endoplasmic reticulum unfolded protein response","type":"exact"},{"name":"up-regulation of erUPR","type":"exact"},{"name":"upregulation of ER unfolded protein response","type":"exact"},{"name":"upregulation of SREBP-mediated signalling pathway","type":"related"},{"name":"upregulation of endoplasmic reticulum unfolded protein response","type":"exact"},{"name":"upregulation of erUPR","type":"exact"}],"termid":"GO:1900103"}


id: PBO:0057416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548q","termid":"PBO:0057416"}


id: PBO:0113442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Substrate adaptor for Cdc48p; ubiquitin regulatory X (UBX) and Ub-associated (UBA) domain-containing protein that acts as a substrate recruiting cofactor; K48-specific Ub chain binding protein involved in ER-associated degradation (ERAD); positively regulates Glc7p protein phosphatase activity to promote growth and mitotic progression in complex with Cdc48p; regulated by nuclear Ub-dependent degradation (INMAD pathway) independent of the Asi and Doa10 complexes; homolog of human p47 (NSFL1C)","termid":"PBO:0113442"}


id: GO:0097277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any biological process involved in the maintenance of an internal steady state of urea at the level of the cell.","definition_xrefs":["GOC:yaf","PMID:12695560"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular urea homeostasis (obsolete GO:0097277)","termid":"GO:0097277"}


id: GO:0150176
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of phosphatidylethanolamine metabolic process.","definition_xrefs":["PMID:30074985","GOC:aruk","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phosphatidylethanolamine metabolic process","termid":"GO:0150175"},{"relation_name":"is_a","term_name":"positive regulation of phospholipid metabolic process","termid":"GO:1903727"},{"relation_name":"positively_regulates","term_name":"phosphatidylethanolamine metabolic process","termid":"GO:0046337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"positive regulation of phosphatidylethanolamine metabolic process","termid":"GO:0150176"}


id: PBO:0056570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MCPH1 antisense RNA 1","termid":"PBO:0056570"}


id: GO:1904898
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of hepatic stellate cell proliferation.","definition_xrefs":["GOC:TermGenie","PMID:15358192","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of fibroblast proliferation","termid":"GO:0048147"},{"relation_name":"is_a","term_name":"regulation of hepatic stellate cell proliferation","termid":"GO:1904897"},{"relation_name":"negatively_regulates","term_name":"hepatic stellate cell proliferation","termid":"GO:1990922"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of hepatic stellate cell proliferation","synonyms":[{"name":"down regulation of Ito cell proliferation","type":"exact"},{"name":"down regulation of hepatic perisinusoidal cell proliferation","type":"exact"},{"name":"down regulation of hepatic stellate cell proliferation","type":"exact"},{"name":"down regulation of perisinusoidal cell proliferation","type":"exact"},{"name":"down-regulation of Ito cell proliferation","type":"exact"},{"name":"down-regulation of hepatic perisinusoidal cell proliferation","type":"exact"},{"name":"down-regulation of hepatic stellate cell proliferation","type":"exact"},{"name":"down-regulation of perisinusoidal cell proliferation","type":"exact"},{"name":"downregulation of Ito cell proliferation","type":"exact"},{"name":"downregulation of hepatic perisinusoidal cell proliferation","type":"exact"},{"name":"downregulation of hepatic stellate cell proliferation","type":"exact"},{"name":"downregulation of perisinusoidal cell proliferation","type":"exact"},{"name":"inhibition of Ito cell proliferation","type":"narrow"},{"name":"inhibition of hepatic perisinusoidal cell proliferation","type":"narrow"},{"name":"inhibition of hepatic stellate cell proliferation","type":"narrow"},{"name":"inhibition of perisinusoidal cell proliferation","type":"narrow"},{"name":"negative regulation of Ito cell proliferation","type":"exact"},{"name":"negative regulation of hepatic perisinusoidal cell proliferation","type":"exact"},{"name":"negative regulation of perisinusoidal cell proliferation","type":"exact"}],"termid":"GO:1904898"}


id: PBO:0001992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase III complex subunit Rpc17","termid":"PBO:0001992"}


id: PBO:0062052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily V member 2","termid":"PBO:0062052"}


id: PBO:0038932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adhesion G protein-coupled receptor V1","termid":"PBO:0038932"}


id: PATO:0002462
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A composition quality inhering in an bearer by virtue of the bearer's consisting of collagen.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"composition","termid":"PATO:0000025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagenous","termid":"PATO:0002462"}


id: GO:1905386
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein localization to presynapse.","definition_xrefs":["GOC:PARL","GO_REF:0000058","GOC:TermGenie","PMID:24449494","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein localization to synapse","termid":"GO:1902474"},{"relation_name":"is_a","term_name":"regulation of protein localization to presynapse","termid":"GO:1905384"},{"relation_name":"positively_regulates","term_name":"protein localization to presynapse","termid":"GO:1905383"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein localization to presynapse","synonyms":[{"name":"activation of protein localisation in presynapse","type":"narrow"},{"name":"activation of protein localisation to presynapse","type":"narrow"},{"name":"activation of protein localization in presynapse","type":"narrow"},{"name":"activation of protein localization to presynapse","type":"narrow"},{"name":"activation of recruitment of presynaptic proteins","type":"narrow"},{"name":"positive regulation of protein localisation in presynapse","type":"exact"},{"name":"positive regulation of protein localisation to presynapse","type":"exact"},{"name":"positive regulation of protein localization in presynapse","type":"exact"},{"name":"positive regulation of recruitment of presynaptic proteins","type":"exact"},{"name":"up regulation of protein localisation in presynapse","type":"exact"},{"name":"up regulation of protein localisation to presynapse","type":"exact"},{"name":"up regulation of protein localization in presynapse","type":"exact"},{"name":"up regulation of protein localization to presynapse","type":"exact"},{"name":"up regulation of recruitment of presynaptic proteins","type":"exact"},{"name":"up-regulation of protein localisation in presynapse","type":"exact"},{"name":"up-regulation of protein localisation to presynapse","type":"exact"},{"name":"up-regulation of protein localization in presynapse","type":"exact"},{"name":"up-regulation of protein localization to presynapse","type":"exact"},{"name":"up-regulation of recruitment of presynaptic proteins","type":"exact"},{"name":"upregulation of protein localisation in presynapse","type":"exact"},{"name":"upregulation of protein localisation to presynapse","type":"exact"},{"name":"upregulation of protein localization in presynapse","type":"exact"},{"name":"upregulation of protein localization to presynapse","type":"exact"},{"name":"upregulation of recruitment of presynaptic proteins","type":"exact"}],"termid":"GO:1905386"}


id: PBO:0053740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 965","termid":"PBO:0053740"}


id: PBO:0046129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4 gamma 3","termid":"PBO:0046129"}


id: GO:1900454
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of long term synaptic depression.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biological process","termid":"GO:0048518"},{"relation_name":"is_a","term_name":"regulation of long-term synaptic depression","termid":"GO:1900452"},{"relation_name":"positively_regulates","term_name":"long-term synaptic depression","termid":"GO:0060292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of long-term synaptic depression","synonyms":[{"name":"activation of LTD","type":"related"},{"name":"activation of long term depression","type":"broad"},{"name":"activation of long term synaptic depression","type":"narrow"},{"name":"positive regulation of LTD","type":"related"},{"name":"positive regulation of long term depression","type":"broad"},{"name":"positive regulation of long term synaptic depression","type":"exact"},{"name":"up regulation of LTD","type":"related"},{"name":"up regulation of long term depression","type":"broad"},{"name":"up regulation of long term synaptic depression","type":"exact"},{"name":"up-regulation of LTD","type":"related"},{"name":"up-regulation of long term depression","type":"broad"},{"name":"up-regulation of long term synaptic depression","type":"exact"},{"name":"upregulation of LTD","type":"related"},{"name":"upregulation of long term depression","type":"broad"},{"name":"upregulation of long term synaptic depression","type":"exact"}],"termid":"GO:1900454"}


id: FYPO:0007767
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of thiabendazole binding by a gene product (usually a protein) in a mutant is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah","PMID:33925026"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652"],"is_obsolete":false,"name":"decreased thiabendazole binding","synonyms":[{"name":"decreased TBZ binding","type":"exact"},{"name":"reduced TBZ binding","type":"exact"},{"name":"reduced thiabendazole binding","type":"exact"}],"termid":"FYPO:0007767"}


id: GO:0070897
data:
  {"annotated_genes":["SJAG_03095","SJAG_02458","SJAG_02174","SJAG_01475","SJAG_03120","SJAG_01523","SJAG_01771","SJAG_04274","SJAG_01707","SJAG_00741","SJAG_03285","SJAG_04654","SJAG_02813","SJAG_00692","SJAG_03956","SJAG_01808","SJAG_00766","SJAG_02691","SJAG_03900","SJAG_03007"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111254,85836],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0045899"},{"annotations":[63525,91848,105230],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001188"},{"annotations":[85405,110863,111446,66524,64332,83527,104575,84742,113400,90250,92135,86036,84483],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051123"},{"annotations":[99162,112278],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070898"}]},"cv_name":"biological_process","definition":"The formation of a large multiprotein-DNA complex that self-assembles on gene promoter through the sequential recruitment of the general initiation factors that compose the preinitiation complex (PIC). The PIC engages the RNA polymerase on its DNA template strand and sparks polymerization of the first few RNA nucleotides.","definition_xrefs":["GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-DNA complex assembly","termid":"GO:0065004"},{"relation_name":"part_of","term_name":"DNA-templated transcription initiation","termid":"GO:0006352"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00692":null,"SJAG_00741":null,"SJAG_00766":null,"SJAG_01475":null,"SJAG_01523":null,"SJAG_01707":null,"SJAG_01771":null,"SJAG_01808":null,"SJAG_02174":null,"SJAG_02458":null,"SJAG_02691":null,"SJAG_02813":null,"SJAG_03007":null,"SJAG_03095":null,"SJAG_03120":null,"SJAG_03285":null,"SJAG_03900":null,"SJAG_03956":null,"SJAG_04274":null,"SJAG_04654":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0010467","GO:0044085","GO:0065003","GO:0006351","GO:0008150"],"is_obsolete":false,"name":"transcription preinitiation complex assembly","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["GO:0001126"],"synonyms":[{"name":"DNA-dependent transcriptional preinitiation complex assembly","type":"exact"},{"name":"DNA-templated transcriptional preinitiation complex assembly","type":"exact"},{"name":"bacterial-type RNA polymerase preinitiation complex assembly","type":"narrow"},{"name":"bacterial-type RNA polymerase transcription PIC formation","type":"narrow"},{"name":"bacterial-type RNA polymerase transcriptional preinitiation complex formation","type":"narrow"},{"name":"transcription PIC biosynthesis","type":"broad"},{"name":"transcription PIC formation","type":"broad"},{"name":"transcriptional preinitiation complex formation","type":"broad"}],"termid":"GO:0070897","terms_by_termid":{"GO:0001188":null,"GO:0045899":null,"GO:0051123":null,"GO:0070898":null}}


id: PR:Q9P7L2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ubx4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7L2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBX domain-containing protein 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21C3.11","synonyms":[{"name":"Spom972h-ubx4","type":"exact"}],"termid":"PR:Q9P7L2"}


id: PBO:0055842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LRIG2 divergent transcript","termid":"PBO:0055842"}


id: GO:0032399
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a HECT, 'Homologous to the E6-AP Carboxy-Terminus', domain of a protein.","definition_xrefs":["Pfam:PF00632","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"HECT domain binding","termid":"GO:0032399"}


id: GO:1905495
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of G-quadruplex DNA binding.","definition_xrefs":["GO_REF:0000059","GOC:TermGenie","PMID:26503245"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of DNA binding","termid":"GO:0043388"},{"relation_name":"is_a","term_name":"regulation of G-quadruplex DNA binding","termid":"GO:1905493"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of G-quadruplex DNA binding","synonyms":[{"name":"activation of G quadruplex DNA binding","type":"narrow"},{"name":"activation of G quartet DNA binding","type":"narrow"},{"name":"activation of G-DNA binding","type":"narrow"},{"name":"activation of G-quadruplex DNA binding","type":"narrow"},{"name":"activation of G-quartet DNA binding","type":"narrow"},{"name":"activation of quadruplex DNA binding","type":"narrow"},{"name":"activation of tetraplex DNA binding","type":"narrow"},{"name":"positive regulation of G quadruplex DNA binding","type":"exact"},{"name":"positive regulation of G quartet DNA binding","type":"exact"},{"name":"positive regulation of G-DNA binding","type":"exact"},{"name":"positive regulation of G-quartet DNA binding","type":"exact"},{"name":"positive regulation of quadruplex DNA binding","type":"exact"},{"name":"positive regulation of tetraplex DNA binding","type":"exact"},{"name":"up regulation of G quadruplex DNA binding","type":"exact"},{"name":"up regulation of G quartet DNA binding","type":"exact"},{"name":"up regulation of G-DNA binding","type":"exact"},{"name":"up regulation of G-quadruplex DNA binding","type":"exact"},{"name":"up regulation of G-quartet DNA binding","type":"exact"},{"name":"up regulation of quadruplex DNA binding","type":"exact"},{"name":"up regulation of tetraplex DNA binding","type":"exact"},{"name":"up-regulation of G quadruplex DNA binding","type":"exact"},{"name":"up-regulation of G quartet DNA binding","type":"exact"},{"name":"up-regulation of G-DNA binding","type":"exact"},{"name":"up-regulation of G-quadruplex DNA binding","type":"exact"},{"name":"up-regulation of G-quartet DNA binding","type":"exact"},{"name":"up-regulation of quadruplex DNA binding","type":"exact"},{"name":"up-regulation of tetraplex DNA binding","type":"exact"},{"name":"upregulation of G quadruplex DNA binding","type":"exact"},{"name":"upregulation of G quartet DNA binding","type":"exact"},{"name":"upregulation of G-DNA binding","type":"exact"},{"name":"upregulation of G-quadruplex DNA binding","type":"exact"},{"name":"upregulation of G-quartet DNA binding","type":"exact"},{"name":"upregulation of quadruplex DNA binding","type":"exact"},{"name":"upregulation of tetraplex DNA binding","type":"exact"}],"termid":"GO:1905495"}


id: PBO:0046795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F2R like trypsin receptor 1","termid":"PBO:0046795"}


id: GO:0015089
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a copper ions (Cu2+) from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations.","definition_xrefs":["TC:9.A.11.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"copper ion transmembrane transporter activity","termid":"GO:0005375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"high-affinity copper ion transmembrane transporter activity","synonyms":[{"name":"high affinity copper ion transmembrane transporter activity","type":"exact"},{"name":"high affinity copper transporter activity","type":"exact"}],"termid":"GO:0015089"}


id: PR:Q09848
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- usp108 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09848"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U1 snRNP-associated protein usp108 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23D3.08","synonyms":[{"name":"Spom972h-usp108","type":"exact"}],"termid":"PR:Q09848"}


id: GO:0043484
data:
  {"annotated_genes":["SJAG_00996","SJAG_04782","SJAG_00249","SJAG_01919","SJAG_02018","SJAG_02058","SJAG_01799","SJAG_01040","SJAG_01511"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114456],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905746"},{"annotations":[74362,72961,107001,88260],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048026"},{"annotations":[91483],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000381"},{"annotations":[94671],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905744"},{"annotations":[89846,114760],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048024"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of RNA splicing, the process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gene expression","termid":"GO:0010468"},{"relation_name":"is_a","term_name":"regulation of primary metabolic process","termid":"GO:0080090"},{"relation_name":"regulates","term_name":"RNA splicing","termid":"GO:0008380"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00249":null,"SJAG_00996":null,"SJAG_01040":null,"SJAG_01511":null,"SJAG_01799":null,"SJAG_01919":null,"SJAG_02018":null,"SJAG_02058":null,"SJAG_04782":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of RNA splicing","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0043484","terms_by_termid":{"GO:0000381":null,"GO:0048024":null,"GO:0048026":null,"GO:1905744":null,"GO:1905746":null}}


id: PBO:0082134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Actin filament binding protein that enhances actin ring formation; IQGAP family member required for assembly and contraction of the AMR, prior to cytokinesis; localizes to the contractile ring during anaphase in an Mlc1p-dependent manner, recruiting Myo1p and Hof1p to the site, and promoting cytokinetic core complex assembly; specifies bud-site selection, localizing axial markers Bud4p and Cdc12p; regulated by Cdc28p; relocalizes from the bud neck to the cytoplasm upon replication stress","termid":"PBO:0082134"}


id: PR:O14217
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mitochondrial import receptor subunit TOM70 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01015"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial import receptor subunit tom70 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6B12.12","secondary_identifiers":["UniProtKB:O14217"],"synonyms":[{"name":"Spom972h-TOMM70A","type":"exact"},{"name":"translocase of outer membrane 40 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14217"}


id: PBO:0085629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in Fe-S cluster transfer to mitochondrial clients; protects [4Fe-4S] clusters from damage due to oxidative stress by acting along with Nfu1p at a late step in the transfer of [4Fe-4S] clusters from the ISA complex to mitochondrial client proteins like lipoate synthase and succinate dehydrogenase; sequence similarity to human BOLA family member, BOLA3, mutations of which are associated with Multiple Mitochondria Dysfunctions Syndrome (MMDS2)","termid":"PBO:0085629"}


id: FYPO:0005277
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell has two or more nuclei and more than one septum per cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multinucleate","termid":"FYPO:0003341"},{"relation_name":"is_a","term_name":"multiseptate cell","termid":"FYPO:0004295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"multinucleate multiseptate cell","termid":"FYPO:0005277"}


id: PBO:0078172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta joining 1-3","termid":"PBO:0078172"}


id: PBO:0061458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NRF2 regulation associated lncRNA","termid":"PBO:0061458"}


id: GO:0033929
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endohydrolysis of (1->4)-beta-D-galactosidic linkages in blood group A and B substances.","definition_xrefs":["EC:3.2.1.102"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactosidase activity","termid":"GO:0015925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824","GO:0016798"],"is_obsolete":false,"name":"blood-group-substance endo-1,4-beta-galactosidase activity","secondary_identifiers":["MetaCyc:3.2.1.102-RXN"],"synonyms":[{"name":"blood-group-substance 1,4-beta-D-galactanohydrolase activity","type":"related"},{"name":"endo-beta-galactosidase activity","type":"broad"}],"termid":"GO:0033929"}


id: PBO:0086233
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that interacts with Rab GTPases; localized to late Golgi vesicles; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport","termid":"PBO:0086233"}


id: MOD:00866
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-proline residue to one of several dihydroxylated proline residues, such as (2S,3R,4R)-3,4-dihydroxyproline or (2S,3R,4S)-3,4-dihydroxyproline.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dihydroxylated residue","termid":"MOD:00428"},{"relation_name":"is_a","term_name":"hydroxylated proline","termid":"MOD:00678"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydroxylated proline","synonyms":[{"name":"Hy2Pro","type":"exact"}],"termid":"MOD:00866"}


id: GO:0044453
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of the nuclear membrane, the envelope that surrounds the nucleus of eukaryotic cells.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete nuclear membrane part (obsolete GO:0044453)","termid":"GO:0044453"}


id: PBO:0073844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 8 member A3","termid":"PBO:0073844"}


id: PBO:0041882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cation channel sperm associated 1","termid":"PBO:0041882"}


id: GO:1904847
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell chemotaxis to fibroblast growth factor.","definition_xrefs":["PMID:23233752","GOC:rph","GOC:BHF","GOC:BHF_miRNA","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell migration","termid":"GO:0030334"},{"relation_name":"is_a","term_name":"regulation of chemotaxis","termid":"GO:0050920"},{"relation_name":"is_a","term_name":"regulation of cellular response to growth factor stimulus","termid":"GO:0090287"},{"relation_name":"regulates","term_name":"cell chemotaxis to fibroblast growth factor","termid":"GO:0035766"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell chemotaxis to fibroblast growth factor","termid":"GO:1904847"}


id: PBO:0034618
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-meiosis_II_metaphase/anaphase_transition_delay","termid":"PBO:0034618"}


id: SO:0001566
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant located within a regulatory region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_variant","termid":"SO:0001878"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulatory_region_variant","secondary_identifiers":["http://snpeff.sourceforge.net/SnpEff_manual.html","http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences"],"synonyms":[{"name":"Jannovar:regulatory_region_variant","type":"exact"},{"name":"VEP:regulatory_region_variant","type":"exact"},{"name":"regulatory region variant","type":"exact"},{"name":"regulatory_region_","type":"exact"},{"name":"snpEff:REGULATION","type":"exact"}],"termid":"SO:0001566"}


id: GO:0004784
data:
  {"annotated_genes":["SJAG_00668","SJAG_03303","SJAG_04788","SJAG_01734"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[85116,96255,100103,106217],"is_not":false,"summary":null,"term":"GO:0004784"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide.","definition_xrefs":["GOC:vw","EC:1.15.1.1","PMID:15064408"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antioxidant activity","termid":"GO:0016209"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on superoxide radicals as acceptor","termid":"GO:0016721"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00668":null,"SJAG_01734":null,"SJAG_03303":null,"SJAG_04788":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"superoxide dismutase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-3777112","RHEA:20696","GO:0004785","GO:0008382","Reactome:R-HSA-1222469","Reactome:R-HSA-1222462","MetaCyc:SUPEROX-DISMUT-RXN","Reactome:R-HSA-3299680","GO:0008383","GO:0016954","Reactome:R-HSA-3299682","Reactome:R-HSA-3299691"],"synonyms":[{"name":"Cu,Zn-SOD","type":"related"},{"name":"Cu-Zn superoxide dismutase activity","type":"narrow"},{"name":"Fe-SOD","type":"related"},{"name":"Mn, Fe superoxide dismutase","type":"narrow"},{"name":"Mn-SOD","type":"related"},{"name":"SOD","type":"related"},{"name":"SOD-1","type":"related"},{"name":"SOD-2","type":"related"},{"name":"SOD-3","type":"related"},{"name":"SOD-4","type":"related"},{"name":"SODF","type":"related"},{"name":"SODS","type":"related"},{"name":"copper, zinc superoxide dismutase activity","type":"narrow"},{"name":"cuprein","type":"related"},{"name":"cytocuprein","type":"related"},{"name":"erythrocuprein","type":"related"},{"name":"ferrisuperoxide dismutase activity","type":"narrow"},{"name":"hemocuprein","type":"related"},{"name":"hepatocuprein","type":"related"},{"name":"iron superoxide dismutase activity","type":"narrow"},{"name":"iron superoxide oxidoreductase","type":"related"},{"name":"manganese superoxide dismutase activity","type":"narrow"},{"name":"manganese superoxide oxidoreductase","type":"related"},{"name":"nickel superoxide dismutase activity","type":"narrow"},{"name":"nickel superoxide oxidoreductase","type":"related"},{"name":"superoxide dismutase I","type":"related"},{"name":"superoxide dismutase II","type":"related"},{"name":"superoxide:superoxide oxidoreductase activity","type":"exact"},{"name":"zinc superoxide oxidoreductase","type":"related"}],"termid":"GO:0004784","terms_by_termid":{"GO:0004784":null}}


id: FYPO:0006525
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which sister kinetochores of a replicated chromosome separate prematurely when the population in which the cell is found is in stationary phase.","definition_xrefs":["PomBase:mah","PMID:11598020"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"premature sister kinetochore separation during stationary phase","synonyms":[{"name":"split kinetochores during stationary phase","type":"related"}],"termid":"FYPO:0006525"}


id: PBO:0038531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abhydrolase domain containing 5, lysophosphatidic acid acyltransferase","termid":"PBO:0038531"}


id: FYPO:0000810
data:
  {"alleles_by_uniquename":{"SJAG_01242:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01242","name":"vps32delta","uniquename":"SJAG_01242:allele-1"},"SJAG_01374:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01374","name":"nup132delta","uniquename":"SJAG_01374:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_01906:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01906","name":"nem1delta","uniquename":"SJAG_01906:allele-1"},"SJAG_02763:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02763","name":"ned1delta","uniquename":"SJAG_02763:allele-1"},"SJAG_02763:allele-2":{"allele_type":"amino_acid_mutation","description":"D422E,D424E","gene_uniquename":"SJAG_02763","name":"ned1cat","synonyms":[{"name":"Catalytic mutant","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-2"},"SJAG_02763:allele-4":{"allele_type":"amino_acid_mutation","description":"S235E; S651E","gene_uniquename":"SJAG_02763","name":"ned1S235E/S651E","synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"},"SJAG_02763:allele-5":{"allele_type":"amino_acid_mutation","description":"S499E; S538E; T620E; T638E; S651E","gene_uniquename":"SJAG_02763","name":"ned1-5E","uniquename":"SJAG_02763:allele-5"},"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03449:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"man1DHEH","gene_uniquename":"SJAG_03449","name":"Man1DHEH","uniquename":"SJAG_03449:allele-2"},"SJAG_03449:allele-3":{"allele_type":"amino_acid_insertion_and_deletion","description":"man1-1-488","gene_uniquename":"SJAG_03449","name":"man1-1-488","uniquename":"SJAG_03449:allele-3"},"SJAG_03891:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03891","name":"alx1delta","uniquename":"SJAG_03891:allele-1"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"},"SJAG_03940:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03940","name":"nem2delta","uniquename":"SJAG_03940:allele-1"},"SJAG_04284:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04284","name":"nup61delta","uniquename":"SJAG_04284:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"},"SJAG_05207:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05207","name":"cmp7delta","uniquename":"SJAG_05207:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115320,115212,115207,115214],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0003779"},{"annotations":[115439],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000815"},{"annotations":[115140],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003973"},{"annotations":[115509,115176,115177,115184,115510,115321,115517,115516],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007772"},{"annotations":[115237,115225,115228,115240,115224,115232],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0001556"},{"annotations":[115433],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0003976"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleus organization is abnormal. Nucleus organization results in the assembly, arrangement of constituent parts, or disassembly of the nucleus.","definition_xrefs":["PomBase:mah","GO:0006997"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular component organization during vegetative growth","termid":"FYPO:0001353"}],"gene_count":12,"genes_by_uniquename":{"SJAG_01242":null,"SJAG_01374":null,"SJAG_01745":null,"SJAG_01906":null,"SJAG_02763":null,"SJAG_03449":null,"SJAG_03891":null,"SJAG_03892":null,"SJAG_03940":null,"SJAG_04284":null,"SJAG_04464":null,"SJAG_05207":null},"genotype_count":17,"genotypes_by_uniquename":{"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Man1DHEH(man1DHEH)","display_uniquename":"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-2","expression":"Not assayed or wild type"}]}]},"alx1delta":{"display_name":"alx1delta","display_uniquename":"alx1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03891:allele-1","expression":"Null"}]}]},"cmp7delta":{"display_name":"cmp7delta","display_uniquename":"cmp7delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]}]},"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]},"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type":{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]},"man1delta":{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]},"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1-5E(S499E; S538E; T620E; T638E; S651E aa)","display_uniquename":"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-5","expression":"Not assayed or wild type"}]}]},"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1S235E/S651E(S235E; S651E aa)","display_uniquename":"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-4","expression":"Not assayed or wild type"}]}]},"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1cat(D422E,D424E aa)","display_uniquename":"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-2","expression":"Not assayed or wild type"}]}]},"ned1delta":{"display_name":"ned1delta","display_uniquename":"ned1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-1","expression":"Null"}]}]},"nem1delta":{"display_name":"nem1delta","display_uniquename":"nem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01906:allele-1","expression":"Null"}]}]},"nem2delta":{"display_name":"nem2delta","display_uniquename":"nem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03940:allele-1","expression":"Null"}]}]},"nup132delta":{"display_name":"nup132delta","display_uniquename":"nup132delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01374:allele-1","expression":"Null"}]}]},"nup61delta":{"display_name":"nup61delta","display_uniquename":"nup61delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04284:allele-1","expression":"Null"}]}]},"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"vps32delta":{"display_name":"vps32delta","display_uniquename":"vps32delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01242:allele-1","expression":"Null"}]}]},"vps4delta":{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal nucleus organization","references_by_uniquename":{"PMID:21802294":null,"PMID:24184107":null,"PMID:26774782":null,"PMID:28954740":null,"PMID:32109380":null,"PMID:32243490":null,"PMID:33495454":null},"single_locus_annotated_genes":["SJAG_01745","SJAG_02763","SJAG_01374","SJAG_03449","SJAG_01242","SJAG_01906","SJAG_04464","SJAG_05207","SJAG_04284","SJAG_03940","SJAG_03892","SJAG_03891"],"single_locus_genotype_uniquenames":["Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","lem2delta","nem1delta","ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","man1delta","nup61delta","ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","alx1delta","nem2delta","cmp7delta","ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","nup132delta","ned1delta","vps4delta","man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","vps32delta"],"synonyms":[{"name":"abnormal nuclear organization","type":"exact"},{"name":"abnormal nucleus organisation","type":"exact"},{"name":"abnormal nucleus organization during mitotic cell cycle","type":"related"},{"name":"abnormal nucleus organization during vegetative growth","type":"exact"}],"termid":"FYPO:0000810","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYPO:0000815":null,"FYPO:0001556":null,"FYPO:0003779":null,"FYPO:0003973":null,"FYPO:0003976":null,"FYPO:0007772":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"FYPO_EXT:0000003":null}}


id: GO:1905432
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of retrograde trans-synaptic signaling by neuropeptide.","definition_xrefs":["GOC:PARL","PMID:19448629","GOC:TermGenie","GO_REF:0000058","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of trans-synaptic signaling","termid":"GO:0099177"},{"relation_name":"regulates","term_name":"retrograde trans-synaptic signaling by neuropeptide","termid":"GO:0099082"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of retrograde trans-synaptic signaling by neuropeptide","synonyms":[{"name":"regulation of neuropeptide-mediated retrograde trans-synaptic signaling","type":"related"}],"termid":"GO:1905432"}


id: GO:0008051
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A complex that possesses farnesyl-diphosphate farnesyl transferase activity.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete farnesyl-diphosphate farnesyl transferase complex (obsolete GO:0008051)","synonyms":[{"name":"farnesyl-diphosphate farnesyl transferase complex","type":"exact"}],"termid":"GO:0008051"}


id: PBO:0029102
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_asparagine_level","termid":"PBO:0029102"}


id: PBO:0091460
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by H. sapiens MOGS","termid":"PBO:0091460"}


id: PBO:0078631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif family like 2","termid":"PBO:0078631"}


id: PBO:0091087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"origin recognition complex subunit Orc3","termid":"PBO:0091087"}


id: SO:0000852
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of an exon.","definition_xrefs":["RSC:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcript_region","termid":"SO:0000833"},{"relation_name":"part_of","term_name":"exon","termid":"SO:0000147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exon_region","synonyms":[{"name":"exon region","type":"exact"}],"termid":"SO:0000852"}


id: PBO:0046982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 86 member F, pseudogene","termid":"PBO:0046982"}


id: GO:0060009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a Sertoli cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a Sertoli cell fate.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell development","termid":"GO:0002064"},{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"part_of","term_name":"Sertoli cell differentiation","termid":"GO:0060008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Sertoli cell development","termid":"GO:0060009"}


id: PBO:0089800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pig-U, Gab1","termid":"PBO:0089800"}


id: GO:0080117
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Lateral growth of a plant axis (shoot axis or root) that is an increase in thickness resulting from formation of secondary vascular tissues by the vascular cambium.","definition_xrefs":["ISBN:0471245208","PO:0025004","PMID:19074290","PO:0005598"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lateral growth","termid":"GO:0080190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"secondary growth","synonyms":[{"name":"cambial secondary growth","type":"exact"}],"termid":"GO:0080117"}


id: PBO:0013746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protoporphyrinogen oxidase Hem14 (predicted)","termid":"PBO:0013746"}


id: PBO:0067192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 254, pseudogene","termid":"PBO:0067192"}


id: GO:0099032
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic early endosome membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete anchored component of postsynaptic early endosome membrane (obsolete GO:0099032)","termid":"GO:0099032"}


id: PR:O14265
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A V-type proton ATPase subunit H that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10698:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-type proton ATPase subunit H (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC7D4.10","secondary_identifiers":["UniProtKB:O14265"],"synonyms":[{"name":"SPAC7D4.10","type":"related"},{"name":"Spom972h-ATP6V1H","type":"exact"},{"name":"V-ATPase 54 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"V-ATPase subunit H (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"vacuolar proton pump subunit H (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14265"}


id: PBO:0027711
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-small_multiseptate_cell_during_stationary_phase","termid":"PBO:0027711"}


id: PBO:0077026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymocyte selection associated","termid":"PBO:0077026"}


id: GO:0030095
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An integral chloroplast membrane complex containing the P680 reaction center. In the light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone.","definition_xrefs":["GOC:mtg_sensu","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"photosystem II","termid":"GO:0009523"},{"relation_name":"is_a","term_name":"chloroplast thylakoid membrane protein complex","termid":"GO:0098807"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"chloroplast photosystem II","termid":"GO:0030095"}


id: PBO:0084130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hexokinase isoenzyme 2; phosphorylates glucose in cytosol; predominant hexokinase during growth on glucose; represses expression of HXK1, GLK1, induces expression of its own gene; antiapoptotic; phosphorylation/dephosphorylation at Ser14 by kinase Snf1p, phosphatase Glc7p-Reg1p regulates nucleocytoplasmic shuttling of Hxk2p; functions downstream of Sit4p in control of cell cycle, mitochondrial function, oxidative stress resistance, chronological lifespan; has paralog HXK1","termid":"PBO:0084130"}


id: PBO:0082406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Beta subunit of translation initiation factor eIF2B; the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as negative regulator of GCN4 expression; mutations in human ortholog EIF2B2 cause fatal brain disease childhood ataxia with central nervous system hypomyelination (CACH); human ortholog can complement yeast mutant, allows growth down-regulation of yeast gene","termid":"PBO:0082406"}


id: PBO:0080385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting 13 homolog C","termid":"PBO:0080385"}


id: PBO:0078753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA methyltransferase 44 homolog","termid":"PBO:0078753"}


id: FYPO:0003122
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of autophosphorylation of one or more specific proteins, or of specific protein sites, is decreased during a cellular response to DNA damage.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein phosphorylation during cellular response to DNA damage","termid":"FYPO:0002897"},{"relation_name":"is_a","term_name":"decreased protein autophosphorylation during vegetative growth","termid":"FYPO:0003298"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0002494","FYPO:0002274"],"is_obsolete":false,"name":"decreased protein autophosphorylation during cellular response to DNA damage","synonyms":[{"name":"decreased protein autophosphorylation during cellular response to DNA damage during mitotic cell cycle","type":"related"},{"name":"decreased protein autophosphorylation during cellular response to DNA damage during vegetative growth","type":"exact"},{"name":"reduced protein autophosphorylation during cellular response to DNA damage","type":"exact"}],"termid":"FYPO:0003122"}


id: PBO:0028766
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_rate_of_homologous_chromosome_pairing_at_cis-acting_homologous_chromosome_pairing_region","termid":"PBO:0028766"}


id: RO:HOM0000037
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Historical homology that involves a structure that has no other homologs in the species in which it is defined, and several homologous structures in another species.","definition_xrefs":["BGEE:curator"],"direct_ancestors":[{"relation_name":"is_a","term_name":"in_historical_homology_relationship_with","termid":"RO:HOM0000007"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_1_to_many_homology_relationship_with","synonyms":[{"name":"1 to many homologous to","type":"exact"},{"name":"1:many homology","type":"related"},{"name":"one-to-many homology","type":"exact"}],"termid":"RO:HOM0000037"}


id: PBO:0072713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RWD domain containing 4 pseudogene 2","termid":"PBO:0072713"}


id: PBO:0087157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA lariat debranching enzyme; catalyzes debranching of lariat introns formed during pre-mRNA splicing; required for efficient Ty1 transposition; knockdown of human homolog Dbr1 rescues toxicity of RNA-binding proteins TDP-43 and FUS which are implicated in amyotrophic lateral sclerosis (ALS), suggests potential therapeutic target for ALS and related TDP-43 proteinopathies; human homolog DBR1 can complement yeast dbr1 null mutant","termid":"PBO:0087157"}


id: PATO:0002393
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus.","definition_xrefs":["PATOC:LC"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"tolerant to","termid":"PATO:0000515"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased tolerance to","termid":"PATO:0002393"}


id: PBO:0002557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRIP domain","termid":"PBO:0002557"}


id: FYPO:0005100
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of poly(U) polymerase activity (EC name RNA uridylyltransferase activity) is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000257","FYPO:0000654"],"is_obsolete":false,"name":"normal poly(U) polymerase activity","synonyms":[{"name":"normal PUP activity","type":"exact"},{"name":"normal RNA uridylyltransferase activity","type":"exact"}],"termid":"FYPO:0005100"}


id: GO:0062225
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of somatic muscle development.","definition_xrefs":["PMID:16643882","PMID:25758712"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of somatic muscle development","termid":"GO:0062223"},{"relation_name":"negatively_regulates","term_name":"somatic muscle development","termid":"GO:0007525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of somatic muscle development","termid":"GO:0062225"}


id: FYPO:0006392
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the meiotic spindle pole body is abolished during the first meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to meiotic spindle pole body","termid":"FYPO:0003542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000631","FYPO:0000054","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to meiotic spindle pole body during meiosis I","synonyms":[{"name":"abolished protein localisation to meiotic spindle pole body during meiosis I","type":"exact"},{"name":"abolished protein localization to meiotic SPB during meiosis I","type":"exact"},{"name":"abolished protein localization to meiotic spindle pole body during first meiotic nuclear division","type":"exact"},{"name":"abolished protein localization to spindle pole body during meiosis I","type":"exact"},{"name":"protein localization to meiotic spindle pole body abolished during meiosis I","type":"exact"}],"termid":"FYPO:0006392"}


id: PBO:0080217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vimentin 2, pseudogene","termid":"PBO:0080217"}


id: GO:0010794
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of dolichol biosynthesis. Dolichol biosynthesis consists of the chemical reactions and pathways resulting in the formation of dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of isoprenoid metabolic process","termid":"GO:0019747"},{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of lipid biosynthetic process","termid":"GO:0046890"},{"relation_name":"is_a","term_name":"regulation of alcohol biosynthetic process","termid":"GO:1902930"},{"relation_name":"regulates","term_name":"dolichol biosynthetic process","termid":"GO:0019408"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"regulation of dolichol biosynthetic process","termid":"GO:0010794"}


id: PBO:0011111
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deletion library version 2. has incorrect strain","termid":"PBO:0011111"}


id: SO:0000924
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An edit to insert a GC dinucleotide.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000924 insert_GC (obsolete SO:0000924)","synonyms":[{"name":"insert GC","type":"exact"}],"termid":"SO:0000924"}


id: PBO:0066207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 22","termid":"PBO:0066207"}


id: PBO:0069987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1282, pseudogene","termid":"PBO:0069987"}


id: FYPO:0007376
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a region of the genome that is normally stably assembled and maintained as heterochromatin over successive generations entirely loses heterochromatic structure.","definition_xrefs":["PMID:29899117","PMID:31278118","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal epigenetic heterochromatin inheritance","termid":"FYPO:0007477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0007477"}],"interesting_parent_ids":["FYPO:0007477","FYPO:0001985"],"is_obsolete":false,"name":"abolished epigenetic heterochromatin inheritance","synonyms":[{"name":"abolished PEV","type":"related"},{"name":"abolished epigenetic heterochromatin propagation","type":"exact"},{"name":"abolished epigenetic inheritance of heterochromatin","type":"exact"}],"termid":"FYPO:0007376"}


id: PBO:0081245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 16","termid":"PBO:0081245"}


id: GO:0048453
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the sepal. This process pertains to the initial formation of a structure from unspecified parts.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"floral organ formation","termid":"GO:0048449"},{"relation_name":"part_of","term_name":"sepal morphogenesis","termid":"GO:0048447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sepal formation","secondary_identifiers":["GO:0048423"],"termid":"GO:0048453"}


id: GO:0007358
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Specification of the borders of central gap gene expression mediated largely by the effects of other gap genes; in insects this is exemplified by knirps repression of Kruppel.","definition_xrefs":["ISBN:0879694238"],"gene_count":0,"genotype_count":0,"name":"obsolete establishment of central gap gene boundaries (obsolete GO:0007358)","termid":"GO:0007358"}


id: MOD:01735
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"The protein modification reporter fragment produced by an Proteome Sciences TMT6plex-127 reagent acylated residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"TMT6plex-127 reporter+balance reagent acylated residue","termid":"MOD:01728"},{"relation_name":"derives_from","term_name":"cysTMT6plex-127 reporter+balance reagent cysteine disulfide","termid":"MOD:01824"},{"relation_name":"is_a","term_name":"TMT6plex reporter fragment","termid":"MOD:01716"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMT6plex-127 reporter fragment","synonyms":[{"name":"2,6-dimethyl-1-methylidenepiperidinium","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"},{"name":"cysTMT6plex-127 reporter fragment","type":"exact"}],"termid":"MOD:01735"}


id: SO:0000116
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing a sequence that is modified by editing.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcript_attribute","termid":"SO:0000237"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"edited","termid":"SO:0000116"}


id: GO:0032759
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of TRAIL production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of TRAIL production","termid":"GO:0032679"},{"relation_name":"is_a","term_name":"positive regulation of tumor necrosis factor superfamily cytokine production","termid":"GO:1903557"},{"relation_name":"positively_regulates","term_name":"TRAIL production","termid":"GO:0032639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of TRAIL production","secondary_identifiers":["GO:0045556"],"synonyms":[{"name":"activation of TRAIL production","type":"narrow"},{"name":"positive regulation of TRAIL biosynthetic process","type":"narrow"},{"name":"stimulation of TRAIL production","type":"narrow"},{"name":"up regulation of TRAIL production","type":"exact"},{"name":"up-regulation of TRAIL production","type":"exact"},{"name":"upregulation of TRAIL production","type":"exact"}],"termid":"GO:0032759"}


id: PBO:0049713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HAUS augmin like complex subunit 1 pseudogene 1","termid":"PBO:0049713"}


id: GO:0102680
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + campest-4-en-3-one + O2 + NADPH = (22S)-22-hydroxycampest-4-en-3-one + H2O + NADP.","definition_xrefs":["EC:1.14.13.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"campest-4-en-3-one hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-4231"],"termid":"GO:0102680"}


id: PBO:0088492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldehyde dehydrogenase, implicated in cellular detoxification","termid":"PBO:0088492"}


id: GO:0051123
data:
  {"annotated_genes":["SJAG_00741","SJAG_01707","SJAG_02174","SJAG_00766","SJAG_01523","SJAG_04654","SJAG_03285","SJAG_02458","SJAG_01808","SJAG_01771","SJAG_03095","SJAG_02691","SJAG_01475","SJAG_03900","SJAG_04274"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[64332,66524,83527,84483,84742,85405,86036,90250,92135,104575,110863,111446,113400],"is_not":false,"summary":null,"term":"GO:0051123"},{"annotations":[85836,111254],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0045899"}]},"cv_name":"biological_process","definition":"The formation of a large multiprotein-DNA complex that self-assembles on gene promoter through the sequential recruitment of the general initiation factors that compose the preinitiation complex (PIC) (which may include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIIH complexes). The PIC engages RNA polymerase II on its DNA template strand and sparks polymerization of the first few RNA nucleotides of the nascent transcript, of which 8 are base-paired with the DNA template within a DNA bubble. PIC assembly may result in a pause step, which marks the end of the PIC assembly and may be followed by promoter clearance (exact synonym: promoter escape). For RNA polymerase II PIC assembly is preceded by the formation of a nucleosome-free region that allows the transcription machinery to access the promoter DNA.","definition_xrefs":["PMID:31300188","PMID:15020047","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription preinitiation complex assembly","termid":"GO:0070897"},{"relation_name":"part_of","term_name":"transcription initiation at RNA polymerase II promoter","termid":"GO:0006367"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00741":null,"SJAG_00766":null,"SJAG_01475":null,"SJAG_01523":null,"SJAG_01707":null,"SJAG_01771":null,"SJAG_01808":null,"SJAG_02174":null,"SJAG_02458":null,"SJAG_02691":null,"SJAG_03095":null,"SJAG_03285":null,"SJAG_03900":null,"SJAG_04274":null,"SJAG_04654":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006351"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006351","GO:0044085","GO:0008150","GO:0065003","GO:0010467"],"is_obsolete":false,"name":"RNA polymerase II preinitiation complex assembly","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"RNA polymerase II transcription PIC biosynthesis","type":"exact"},{"name":"RNA polymerase II transcription PIC formation","type":"exact"},{"name":"RNA polymerase II transcriptional preinitiation complex assembly","type":"exact"},{"name":"RNA polymerase II transcriptional preinitiation complex formation","type":"exact"}],"termid":"GO:0051123","terms_by_termid":{"GO:0045899":null,"GO:0051123":null}}


id: PBO:0000139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MatE family transporter (predicted)","termid":"PBO:0000139"}


id: GO:0043269
data:
  {"annotated_genes":["SJAG_03631","SJAG_04551","SJAG_00296"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87322,109435],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905949"},{"annotations":[98242],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905665"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transport","termid":"GO:0051049"},{"relation_name":"regulates","term_name":"monoatomic ion transport","termid":"GO:0006811"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00296":null,"SJAG_03631":null,"SJAG_04551":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of monoatomic ion transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of ion transport","type":"broad"}],"termid":"GO:0043269","terms_by_termid":{"GO:1905665":null,"GO:1905949":null}}


id: GO:0071552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a RIP homotypic interaction motif (RHIM) interaction.","definition_xrefs":["GOC:amm","PMID:11734559"],"gene_count":0,"genotype_count":0,"name":"obsolete RIP homotypic interaction motif-mediated complex assembly (obsolete GO:0071552)","synonyms":[{"name":"RHIM-mediated complex assembly","type":"exact"}],"termid":"GO:0071552"}


id: GO:1990094
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The positive regulation of the receptor clustering process in which N-methyl-D-aspartate (NMDA) receptors are localized to distinct domains in the cell membrane.","definition_xrefs":["PMID:18442977"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of N-methyl-D-aspartate receptor clustering (obsolete GO:1990094)","synonyms":[{"name":"positive regulation of N-methyl-D-aspartate receptor clustering","type":"exact"},{"name":"positive regulation of NMDA receptor clustering","type":"exact"}],"termid":"GO:1990094"}


id: PBO:0005797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Ppk34","termid":"PBO:0005797"}


id: GO:1900542
data:
  {"annotated_genes":["SJAG_00685","SJAG_05314","SJAG_04422","SJAG_01187","SJAG_02380"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72023,75008],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045820"},{"annotations":[111540,107447],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001211"},{"annotations":[85820],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905857"},{"annotations":[114046],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905706"},{"annotations":[75011],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043456"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of purine nucleotide metabolic process.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nucleotide metabolic process","termid":"GO:0006140"},{"relation_name":"regulates","term_name":"purine nucleotide metabolic process","termid":"GO:0006163"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00685":null,"SJAG_01187":null,"SJAG_02380":null,"SJAG_04422":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"regulation of purine nucleotide metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"regulation of purine metabolic process","type":"narrow"},{"name":"regulation of purine metabolism","type":"narrow"},{"name":"regulation of purine nucleotide metabolism","type":"exact"}],"termid":"GO:1900542","terms_by_termid":{"GO:0043456":null,"GO:0045820":null,"GO:1905706":null,"GO:1905857":null,"GO:2001211":null}}


id: PBO:0067722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 20","termid":"PBO:0067722"}


id: PBO:0078790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (GTT) 13-1","termid":"PBO:0078790"}


id: PBO:0056554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"minichromosome maintenance complex component 3 associated protein","termid":"PBO:0056554"}


id: PBO:0081806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 735","termid":"PBO:0081806"}


id: PATO:0025002
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration.","definition_xrefs":["Wikipedia:https://en.wikipedia.org/wiki/Drinking_water"],"direct_ancestors":[{"relation_name":"is_a","term_name":"potability","termid":"PATO:0025000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potable","synonyms":[{"name":"drinkable","type":"exact"}],"termid":"PATO:0025002"}


id: PR:Q10490
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A leucine--tRNA ligase, cytoplasmic that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02145","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine--tRNA ligase, cytoplasmic (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC26F1.13c","secondary_identifiers":["UniProtKB:Q10490"],"synonyms":[{"name":"LeuRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-LARS","type":"exact"},{"name":"leucyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10490"}


id: GO:0046406
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: Mg-protoporphyrin IX + S-adenosyl-L-methionine = Mg-protoporphyrin IX 13-monomethyl ester + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:17809"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-methyltransferase activity","termid":"GO:0008171"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016741","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"magnesium protoporphyrin IX methyltransferase activity","secondary_identifiers":["EC:2.1.1.11","MetaCyc:RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN","KEGG_REACTION:R04237"],"synonyms":[{"name":"(-)-S-adenosyl-L-methionine:magnesium-protoporphyrin IX methyltransferase activity","type":"related"},{"name":"Mg-protoporphyrin IX methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:Mg protoporphyrin methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:magnesium-protoporphyrin O-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:magnesium-protoporphyrin-IX O-methyltransferase activity","type":"related"},{"name":"S-adenosylmethionine-magnesium protoporphyrin methyltransferase activity","type":"related"},{"name":"S-adenosylmethioninemagnesium protoporphyrin methyltransferase activity","type":"related"},{"name":"magnesium-protoporphyrin O-methyltransferase activity","type":"exact"}],"termid":"GO:0046406"}


id: PBO:0050951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon beta 1","termid":"PBO:0050951"}


id: PBO:0109050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metabolism induced tumor activator 1","termid":"PBO:0109050"}


id: FYPO:0006168
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins is normal (i.e. indistinguishable from wild type) during a cellular response to paraquat.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation during vegetative growth","termid":"FYPO:0000776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal protein phosphorylation during cellular response to paraquat","synonyms":[{"name":"normal protein phosphorylation during cellular response to paraquat during mitotic cell cycle","type":"related"},{"name":"normal protein phosphorylation during cellular response to paraquat during vegetative growth","type":"exact"}],"termid":"FYPO:0006168"}


id: PBO:0082308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor","termid":"PBO:0082308"}


id: GO:0021611
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the facial nerve. This process pertains to the initial formation of a structure from unspecified parts. This sensory and motor nerve supplies the muscles of facial expression and the expression and taste at the anterior two-thirds of the tongue. The principal branches are the superficial ophthalmic, buccal, palatine and hyomandibular. The main trunk synapses within pterygopalatine ganglion in the parotid gland and this ganglion then gives of nerve branches which supply the lacrimal gland and the mucous secreting glands of the nasal and oral cavities.","definition_xrefs":["ISBN:0838580343","GOC:cls","GOC:dph","GO_REF:0000021","GOC:dgh","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve formation","termid":"GO:0021603"},{"relation_name":"part_of","term_name":"facial nerve morphogenesis","termid":"GO:0021610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"facial nerve formation","synonyms":[{"name":"CN VII biosynthesis","type":"related"},{"name":"CN VII formation","type":"related"}],"termid":"GO:0021611"}


id: PBO:0038642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA thioesterase 9","termid":"PBO:0038642"}


id: PBO:0068647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 28, pseudogene","termid":"PBO:0068647"}


id: PBO:0049541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B clustered histone 5","termid":"PBO:0049541"}


id: PBO:0088813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-amylase homolog Aah2","termid":"PBO:0088813"}


id: PBO:0015235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fumarate reductase Osm1 (predicted)","termid":"PBO:0015235"}


id: PBO:0027111
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-incomplete_cell_wall_disassembly_at_cell_fusion_site","termid":"PBO:0027111"}


id: PBO:0027004
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-fragmented_DNA_during_meiotic_cell_cycle","termid":"PBO:0027004"}


id: PBO:0091623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pdc2-Repressed lncRNA, hry1-antisense","termid":"PBO:0091623"}


id: GO:2001124
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of translational frameshifting.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of translational elongation","termid":"GO:0006448"},{"relation_name":"regulates","term_name":"translational frameshifting","termid":"GO:0006452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of translational frameshifting","termid":"GO:2001124"}


id: PBO:0052127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium voltage-gated channel subfamily E regulatory subunit 5","termid":"PBO:0052127"}


id: GO:0043159
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A structural framework, or 'dense core' at the interior of an acrosome. May regulate the distribution of hydrolases within the acrosome and their release during the acrosome reaction.","definition_xrefs":["GOC:jl","PMID:8949900","PMID:9139729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"acrosomal vesicle","termid":"GO:0001669"},{"relation_name":"part_of","term_name":"vacuole","termid":"GO:0005773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005773"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0031410","GO:0005773","GO:0005737"],"is_obsolete":false,"name":"acrosomal matrix","termid":"GO:0043159"}


id: GO:0048325
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of axial mesoderm cell fate determination.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of axial mesodermal cell fate determination","termid":"GO:0048324"},{"relation_name":"is_a","term_name":"negative regulation of mesodermal cell fate determination","termid":"GO:0048335"},{"relation_name":"negatively_regulates","term_name":"axial mesodermal cell fate determination","termid":"GO:0048323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of axial mesodermal cell fate determination","synonyms":[{"name":"down regulation of axial mesodermal cell fate determination","type":"exact"},{"name":"down-regulation of axial mesodermal cell fate determination","type":"exact"},{"name":"downregulation of axial mesodermal cell fate determination","type":"exact"},{"name":"inhibition of axial mesodermal cell fate determination","type":"narrow"}],"termid":"GO:0048325"}


id: GO:2001116
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a methanopterin.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pteridine-containing compound biosynthetic process","termid":"GO:0042559"},{"relation_name":"is_a","term_name":"organophosphate biosynthetic process","termid":"GO:0090407"},{"relation_name":"is_a","term_name":"methanopterin-containing compound metabolic process","termid":"GO:2001115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0042559"}],"interesting_parent_ids":["GO:0008150","GO:0042559"],"is_obsolete":false,"name":"methanopterin-containing compound biosynthetic process","synonyms":[{"name":"methanopterin biosynthesis","type":"exact"}],"termid":"GO:2001116"}


id: GO:1904585
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a putrescine stimulus.","definition_xrefs":["GO_REF:0000071","GOC:TermGenie","PMID:20805360"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organonitrogen compound","termid":"GO:0010243"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to putrescine","synonyms":[{"name":"response to 1,4-Butanediamine","type":"exact"},{"name":"response to 1,4-Diaminobutane","type":"exact"},{"name":"response to tetramethylenediamine","type":"exact"}],"termid":"GO:1904585"}


id: PBO:0091428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane ammonium transmembrane transporter Amt3","termid":"PBO:0091428"}


id: GO:0019117
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a dihydroxyfluorene + O2 = the corresponding 2-hydroxy-4-(oxo-1,3-dihydro-2H-inden-ylidene) but-2-enoic acid.","definition_xrefs":["GOC:mah","UM-BBD_reactionID:r0415","UM-BBD_reactionID:r0422"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"dihydroxyfluorene dioxygenase activity","secondary_identifiers":["EC:1.13.11.-"],"termid":"GO:0019117"}


id: GO:0042855
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of eugenol, a colorless, aromatic, liquid hydrocarbon (C10H12O2) found in clove oil.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenylpropanoid biosynthetic process","termid":"GO:0009699"},{"relation_name":"is_a","term_name":"eugenol metabolic process","termid":"GO:0042854"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"olefinic compound biosynthetic process","termid":"GO:0120255"},{"relation_name":"is_a","term_name":"ether biosynthetic process","termid":"GO:1901503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0019748","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"eugenol biosynthetic process","synonyms":[{"name":"4-allyl-2-methoxyphenol biosynthesis","type":"exact"},{"name":"4-allyl-2-methoxyphenol biosynthetic process","type":"exact"},{"name":"eugenic acid biosynthesis","type":"exact"},{"name":"eugenic acid biosynthetic process","type":"exact"},{"name":"eugenol anabolism","type":"exact"},{"name":"eugenol biosynthesis","type":"exact"},{"name":"eugenol formation","type":"exact"},{"name":"eugenol synthesis","type":"exact"}],"termid":"GO:0042855"}


id: GO:2000652
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of secondary cell wall biogenesis.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular component biogenesis","termid":"GO:0044087"},{"relation_name":"is_a","term_name":"regulation of cell wall organization or biogenesis","termid":"GO:1903338"},{"relation_name":"regulates","term_name":"plant-type secondary cell wall biogenesis","termid":"GO:0009834"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0071554"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0071554","GO:0044085"],"is_obsolete":false,"name":"regulation of secondary cell wall biogenesis","synonyms":[{"name":"regulation of cellulose and pectin-containing secondary cell wall biogenesis","type":"exact"},{"name":"regulation of plant-type secondary cell wall biogenesis","type":"exact"},{"name":"regulation of secondary cell wall anabolism","type":"related"},{"name":"regulation of secondary cell wall biosynthetic process","type":"related"},{"name":"regulation of secondary cell wall formation","type":"related"},{"name":"regulation of secondary cell wall synthesis","type":"related"}],"termid":"GO:2000652"}


id: PBO:0062164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily K member 5","termid":"PBO:0062164"}


id: GO:0061060
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of the peptidoglycan recognition protein signaling pathway.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune system process","termid":"GO:0002683"},{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of peptidoglycan recognition protein signaling pathway","termid":"GO:0061058"},{"relation_name":"is_a","term_name":"negative regulation of defense response to bacterium","termid":"GO:1900425"},{"relation_name":"negatively_regulates","term_name":"peptidoglycan recognition protein signaling pathway","termid":"GO:0061057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of peptidoglycan recognition protein signaling pathway","synonyms":[{"name":"negative regulation of peptidoglycan recognition protein signalling pathway","type":"exact"}],"termid":"GO:0061060"}


id: PBO:0050407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein C pseudogene 9","termid":"PBO:0050407"}


id: PBO:0082401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Beta subunit of the capping protein heterodimer (Cap1p and Cap2p); capping protein (CP) binds to the barbed ends of actin filaments preventing further polymerization; localized predominantly to cortical actin patches; protein increases in abundance and relocalizes from bud neck to plasma membrane upon DNA replication stress","termid":"PBO:0082401"}


id: GO:1904297
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of osmolarity-sensing cation channel activity.","definition_xrefs":["PMID:18279313","GOC:TermGenie","GO_REF:0000059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of osmolarity-sensing cation channel activity","termid":"GO:1904295"},{"relation_name":"is_a","term_name":"positive regulation of signaling receptor activity","termid":"GO:2000273"},{"relation_name":"is_a","term_name":"positive regulation of cation channel activity","termid":"GO:2001259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of osmolarity-sensing cation channel activity","synonyms":[{"name":"activation of osmolarity-sensing cation channel activity","type":"narrow"},{"name":"up regulation of osmolarity-sensing cation channel activity","type":"exact"},{"name":"up-regulation of osmolarity-sensing cation channel activity","type":"exact"},{"name":"upregulation of osmolarity-sensing cation channel activity","type":"exact"}],"termid":"GO:1904297"}


id: PBO:0030610
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_calcium_level","termid":"PBO:0030610"}


id: PBO:0001230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar protein required for rRNA processing","termid":"PBO:0001230"}


id: PBO:0048243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G antigen 12D","termid":"PBO:0048243"}


id: PBO:0082780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the SWR1 complex; complex exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; protein abundance increases in response to DNA replication stress; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0082780"}


id: PBO:0080374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting 4 homolog A","termid":"PBO:0080374"}


id: PBO:0030733
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_upon_G0_to_G1_transition","termid":"PBO:0030733"}


id: GO:0010575
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases or activates the frequency, rate, or extent of production of vascular endothelial growth factor.","definition_xrefs":["GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of vascular endothelial growth factor production","termid":"GO:0010574"},{"relation_name":"positively_regulates","term_name":"vascular endothelial growth factor production","termid":"GO:0010573"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of vascular endothelial growth factor production","termid":"GO:0010575"}


id: GO:0089713
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heteromeric complex consisting of Cbf1 and basic leucine zipper (bZIP) containing transcriptional activators, Met4 and Met28, that forms over the sequence TCACGTG in the upstream activating sequence (UAS) of genes involved in sulfur amino acid metabolism, resulting in their transcriptional activation.","definition_xrefs":["PMID:9171357","PMID:8665859"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription regulator complex","termid":"GO:0005667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"Cbf1-Met4-Met28 complex","termid":"GO:0089713"}


id: GO:0045566
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of TRAIL (TNF-related apoptosis inducing ligand) receptor 1.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of TRAIL receptor 1 biosynthetic process (obsolete GO:0045566)","synonyms":[{"name":"activation of TRAIL receptor 1 biosynthetic process","type":"narrow"},{"name":"positive regulation of TRAIL receptor 1 anabolism","type":"exact"},{"name":"positive regulation of TRAIL receptor 1 biosynthesis","type":"exact"},{"name":"positive regulation of TRAIL receptor 1 formation","type":"exact"},{"name":"positive regulation of TRAIL receptor 1 synthesis","type":"exact"},{"name":"stimulation of TRAIL receptor 1 biosynthetic process","type":"narrow"},{"name":"up regulation of TRAIL receptor 1 biosynthetic process","type":"exact"},{"name":"up-regulation of TRAIL receptor 1 biosynthetic process","type":"exact"},{"name":"upregulation of TRAIL receptor 1 biosynthetic process","type":"exact"}],"termid":"GO:0045566"}


id: GO:1905445
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of clathrin coat assembly.","definition_xrefs":["GOC:bf","GOC:PARL","PMID:15533940","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein-containing complex assembly","termid":"GO:0031334"},{"relation_name":"is_a","term_name":"regulation of clathrin coat assembly","termid":"GO:1905443"},{"relation_name":"positively_regulates","term_name":"clathrin coat assembly","termid":"GO:0048268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"positively_regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"positive regulation of clathrin coat assembly","synonyms":[{"name":"activation of clathrin cage assembly","type":"narrow"},{"name":"activation of clathrin coat assembly","type":"narrow"},{"name":"positive regulation of clathrin cage assembly","type":"exact"},{"name":"up regulation of clathrin cage assembly","type":"exact"},{"name":"up regulation of clathrin coat assembly","type":"exact"},{"name":"up-regulation of clathrin cage assembly","type":"exact"},{"name":"up-regulation of clathrin coat assembly","type":"exact"},{"name":"upregulation of clathrin cage assembly","type":"exact"},{"name":"upregulation of clathrin coat assembly","type":"exact"}],"termid":"GO:1905445"}


id: GO:1900135
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of renin secretion into blood stream.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein secretion","termid":"GO:0050714"},{"relation_name":"is_a","term_name":"regulation of renin secretion into blood stream","termid":"GO:1900133"},{"relation_name":"positively_regulates","term_name":"renin secretion into blood stream","termid":"GO:0002001"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of renin secretion into blood stream","synonyms":[{"name":"activation of renin release into blood stream","type":"narrow"},{"name":"activation of renin secretion into blood stream","type":"narrow"},{"name":"positive regulation of renin release into blood stream","type":"exact"},{"name":"up regulation of renin release into blood stream","type":"exact"},{"name":"up regulation of renin secretion into blood stream","type":"exact"},{"name":"up-regulation of renin release into blood stream","type":"exact"},{"name":"up-regulation of renin secretion into blood stream","type":"exact"},{"name":"upregulation of renin release into blood stream","type":"exact"},{"name":"upregulation of renin secretion into blood stream","type":"exact"}],"termid":"GO:1900135"}


id: PBO:0042576
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDKN2B antisense RNA 1","termid":"PBO:0042576"}


id: PBO:0028445
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_mitotic_spindle_midzone_during_anaphase_B","termid":"PBO:0028445"}


id: GO:0010248
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of ions to establish or maintain an electrochemical gradient across a membrane by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah","GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic ion transmembrane transport","termid":"GO:0034220"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"establishment or maintenance of transmembrane electrochemical gradient","termid":"GO:0010248"}


id: PBO:0028426
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_sodium_fluoride","termid":"PBO:0028426"}


id: GO:0009409
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to stress","termid":"GO:0006950"},{"relation_name":"is_a","term_name":"response to temperature stimulus","termid":"GO:0009266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cold","synonyms":[{"name":"freezing tolerance","type":"related"}],"termid":"GO:0009409"}


id: PBO:0050894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immediate early response 5 like","termid":"PBO:0050894"}


id: GO:1900282
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellobiose catabolic process.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of carbohydrate catabolic process","termid":"GO:0043470"},{"relation_name":"is_a","term_name":"regulation of cellobiose metabolic process","termid":"GO:2000930"},{"relation_name":"regulates","term_name":"cellobiose catabolic process","termid":"GO:2000892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"regulation of cellobiose catabolic process","synonyms":[{"name":"regulation of cellobiose catabolism","type":"exact"}],"termid":"GO:1900282"}


id: PBO:0003313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ORMDL family protein (predicted)","termid":"PBO:0003313"}


id: PBO:0042189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin D1","termid":"PBO:0042189"}


id: PBO:0031811
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_biofilm_formation","termid":"PBO:0031811"}


id: PBO:0055868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat protein 1","termid":"PBO:0055868"}


id: GO:0120256
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of an olefinic compound, any compound which contains a carbon-carbon double bond (aka C=C).","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"olefinic compound catabolic process","synonyms":[{"name":"alkene substituted compound breakdown","type":"exact"},{"name":"alkene substituted compound catabolic process","type":"exact"},{"name":"alkene substituted compound catabolism","type":"exact"},{"name":"alkene substituted compound degradation","type":"exact"}],"termid":"GO:0120256"}


id: PBO:0001206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RWD domain","termid":"PBO:0001206"}


id: PBO:0006185
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_substrate","termid":"PBO:0006185"}


id: GO:0015713
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which phosphoglycerate is transported across a lipid bilayer, from one side of a membrane to the other.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldonate transmembrane transport","termid":"GO:0042873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"phosphoglycerate transmembrane transport","synonyms":[{"name":"phosphoglycerate transport","type":"related"}],"termid":"GO:0015713"}


id: GO:0106321
data:
  {"annotated_genes":["SJAG_01457"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99579],"is_not":false,"summary":null,"term":"GO:0106321"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-(hydroxymethyl)glutathione + NADP+ = S-formylglutathione + NADPH + H+.","definition_xrefs":["RHEA:19981"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity","termid":"GO:0051903"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"S-(hydroxymethyl)glutathione dehydrogenase (NADP+) activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106321","terms_by_termid":{"GO:0106321":null}}


id: PBO:0047621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fidgetin, microtubule severing factor","termid":"PBO:0047621"}


id: PATO:0001268
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of brown hue and low saturation.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brown","termid":"PATO:0000952"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"desaturated brown","synonyms":[{"name":"pale brown","type":"exact"}],"termid":"PATO:0001268"}


id: FYPO:0001374
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the medial cortex of a spore is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to medial cortex","termid":"FYPO:0001371"},{"relation_name":"is_a","term_name":"abnormal protein localization to medial cortex in spores","termid":"FYPO:0001372"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein localization to medial cortex in spores","synonyms":[{"name":"protein localisation to medial cortex abolished in spores","type":"exact"},{"name":"protein localization to medial cortex abolished in spores","type":"exact"},{"name":"protein localization to medial ring abolished in spores","type":"exact"}],"termid":"FYPO:0001374"}


id: GO:0140734
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The elimination of ammonium ions from an excretory cell.","definition_xrefs":["PMID:25740900"],"direct_ancestors":[{"relation_name":"is_a","term_name":"excretion","termid":"GO:0007588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ammonium excretion","synonyms":[{"name":"ammonia excretion","type":"related"}],"termid":"GO:0140734"}


id: GO:0097342
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex whose core components are the receptor-interacting serine/threonine-protein kinases RIPK1 and RIPK3 (also called RIP1 and RIP3). Formation of the ripoptosome can induce an extrinsic apoptotic signaling pathway or a necroptotic signaling pathway. The composition of this protein complex may depend on several factors including nature of the signal, cell type and more.","definition_xrefs":["PMID:22265414","GOC:mtg_apoptosis","GOC:bhm","PMID:22274400"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005829"}],"interesting_parent_ids":["GO:0032991","GO:0005829","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"ripoptosome","synonyms":[{"name":"TNFR1 complex II","type":"narrow"},{"name":"Tnfr1-CII","type":"narrow"},{"name":"necrosome","type":"related"}],"termid":"GO:0097342"}


id: PBO:0090330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxycytidylate deaminase","termid":"PBO:0090330"}


id: GO:0047601
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetate + diphosphate = acetyl phosphate + phosphate.","definition_xrefs":["EC:2.7.2.12","RHEA:24276"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, carboxyl group as acceptor","termid":"GO:0016774"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016301","GO:0003824"],"is_obsolete":false,"name":"acetate kinase (diphosphate) activity","secondary_identifiers":["MetaCyc:ACETATE-KINASE-PYROPHOSPHATE-RXN","KEGG_REACTION:R00320"],"synonyms":[{"name":"acetate kinase (pyrophosphate) activity","type":"related"},{"name":"diphosphate:acetate phosphotransferase activity","type":"related"},{"name":"pyrophosphate-acetate phosphotransferase activity","type":"related"}],"termid":"GO:0047601"}


id: PBO:0091494
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hal3 N-term functionally complements S. cerevisiae HAL3","termid":"PBO:0091494"}


id: GO:0060508
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features of a mature basal cell found in the lung. Differentiation includes the processes involved in commitment of a cell to a specific fate. A basal cell is an epithelial stem cell.","definition_xrefs":["GOC:mtg_lung","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lung cell differentiation","termid":"GO:0060479"},{"relation_name":"part_of","term_name":"lung epithelium development","termid":"GO:0060428"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lung basal cell differentiation","synonyms":[{"name":"pulmonary basal cell differentiation","type":"broad"}],"termid":"GO:0060508"}


id: PR:Q10451
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ppr5 gene.","definition_xrefs":["UniProtKB:Q10451","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pentatricopeptide repeat-containing protein 5, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1093.01","synonyms":[{"name":"Spom972h-ppr5","type":"exact"}],"termid":"PR:Q10451"}


id: GO:0021995
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of joining together the neural folds at either end of the neural tube.","definition_xrefs":["GOC:dgh","GOC:cls","GO_REF:0000021","GOC:jid","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of embryonic epithelium","termid":"GO:0016331"},{"relation_name":"part_of","term_name":"neural tube closure","termid":"GO:0001843"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuropore closure","termid":"GO:0021995"}


id: PATO:0002334
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A adhesivity which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"},{"relation_name":"is_a","term_name":"adhesive","termid":"PATO:0002331"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased adhesivity","termid":"PATO:0002334"}


id: PBO:0045971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"early growth response 4","termid":"PBO:0045971"}


id: PBO:0072063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S11 pseudogene 1","termid":"PBO:0072063"}


id: PBO:0068173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 480","termid":"PBO:0068173"}


id: FYPO:0005610
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein localizes to a smaller portion of the chromosome than normal in the region of a chromosome at which a DNA double-strand break has occurred.","definition_xrefs":["PomBase:mah","PMID:27098497"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to double-strand break site","termid":"FYPO:0002473"},{"relation_name":"is_a","term_name":"altered spatial extent of protein localization to chromatin","termid":"FYPO:0007465"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"decreased spatial extent of protein localization to double-strand break site","synonyms":[{"name":"decreased spatial extent of protein localisation to double-strand break site","type":"exact"},{"name":"decreased spatial extent of protein localization to DSB","type":"exact"},{"name":"decreased spatial extent of protein localization to double-strand break site during mitotic cell cycle","type":"related"},{"name":"decreased spatial extent of protein localization to double-strand break site during vegetative growth","type":"exact"},{"name":"decreased spatial extent of protein localization to site of double-strand break","type":"exact"},{"name":"reduced spatial extent of protein localization to double-strand break","type":"exact"}],"termid":"FYPO:0005610"}


id: GO:0044567
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A large, multimeric protein complex which catalyzes the biosynthesis of cellulose for the plant primary cell wall. In Arabidopsis, contains the essential component proteins CESA1 and -3, and a CESA6-related protein.","definition_xrefs":["PMID:17878302","GOC:tt","PMID:21307367","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellulose synthase complex","termid":"GO:0010330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"primary cell wall cellulose synthase complex","synonyms":[{"name":"primary cell wall CESA complex","type":"exact"},{"name":"primary cell-wall cellulose synthase complex","type":"exact"}],"termid":"GO:0044567"}


id: PBO:0072670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"receptor transporter protein 3","termid":"PBO:0072670"}


id: PBO:0083396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps ORF RGI1/YER067W","termid":"PBO:0083396"}


id: GO:1904279
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase V.","definition_xrefs":["PMID:24726328","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA-templated transcription","termid":"GO:0006355"},{"relation_name":"regulates","term_name":"transcription by RNA polymerase V","termid":"GO:0001060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006355"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0006355","GO:0006351"],"is_obsolete":false,"name":"regulation of transcription by RNA polymerase V","synonyms":[{"name":"regulation of transcription from RNA pol V promoter","type":"exact"},{"name":"regulation of transcription from RNA polymerase V promoter","type":"exact"}],"termid":"GO:1904279"}


id: PBO:0001769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP binding protein, HSR1-related (predicted)","termid":"PBO:0001769"}


id: PBO:0064580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POTE ankyrin domain family member B2","termid":"PBO:0064580"}


id: GO:0004911
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with interleukin-2 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:jl","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor activity","termid":"GO:0004896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"interleukin-2 receptor activity","synonyms":[{"name":"IL-2 receptor activity","type":"exact"},{"name":"IL-2R","type":"exact"}],"termid":"GO:0004911"}


id: PBO:0040581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bile acid-CoA:amino acid N-acyltransferase","termid":"PBO:0040581"}


id: PBO:0082984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoskeletal protein binding protein; required for assembly of the cortical actin cytoskeleton; interacts with proteins regulating actin dynamics and proteins required for endocytosis; found in the nucleus and cell cortex; has 3 SH3 domains","termid":"PBO:0082984"}


id: GO:0061784
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) from peptidoglycan.","definition_xrefs":["GOC:dph","PMID:22748813","GOC:jh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosaminidase activity","termid":"GO:0015929"},{"relation_name":"is_a","term_name":"peptidoglycan muralytic activity","termid":"GO:0061783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016798","GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"peptidoglycan N-acetylglucosaminidase activity","termid":"GO:0061784"}


id: GO:1990519
data:
  {"annotated_genes":["SJAG_00154"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95395],"is_not":false,"summary":null,"term":"GO:1990519"}]},"cv_name":"biological_process","definition":"The process in which a pyrimidine nucleotide is transported across the mitochondrial inner membrane, into the mitochondrial matrix.","definition_xrefs":["PMID:16194150"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleotide transport","termid":"GO:0006864"},{"relation_name":"is_a","term_name":"pyrimidine-containing compound transmembrane transport","termid":"GO:0072531"},{"relation_name":"is_a","term_name":"import into the mitochondrion","termid":"GO:0170036"},{"relation_name":"is_a","term_name":"nucleotide transmembrane transport","termid":"GO:1901679"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00154":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"pyrimidine nucleotide import into mitochondrion","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mitochondrial pyrimidine nucleotide import","type":"exact"}],"termid":"GO:1990519","terms_by_termid":{"GO:1990519":null}}


id: SO:0000828
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosome originating in a nucleus.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"nuclear_sequence","termid":"SO:0000738"},{"relation_name":"is_a","term_name":"chromosome","termid":"SO:0000340"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear_chromosome","synonyms":[{"name":"nuclear chromosome","type":"exact"}],"termid":"SO:0000828"}


id: PBO:0064528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase III subunit GL","termid":"PBO:0064528"}


id: GO:0005824
data:
  {"annotated_genes":["SJAG_01464","SJAG_01215","SJAG_02737","SJAG_01188"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[111529,113006,104925,103173],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061499"}]},"cv_name":"cellular_component","definition":"One of three laminate structures that form the spindle pole body; the outer plaque is in the cytoplasm.","definition_xrefs":["ISBN:0879693568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"spindle pole body","termid":"GO:0005816"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01188":null,"SJAG_01215":null,"SJAG_01464":null,"SJAG_02737":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"part_of","termid":"GO:0005816"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005816","GO:0005575","GO:0015630"],"is_obsolete":false,"name":"outer plaque of spindle pole body","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0005824","terms_by_termid":{"GO:0061499":null}}


id: PATO:0002517
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a saddle.","definition_xrefs":["PATOC:EJS"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"saddle-shaped","termid":"PATO:0002517"}


id: MOD:00333
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine.","definition_xrefs":["Unimod:437#C-term","PubMed:7835418","PubMed:7559516","PubMed:8183363","RESID:AA0328"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide or nucleic acid modified residue","termid":"MOD:00701"},{"relation_name":"is_a","term_name":"modified L-asparagine residue","termid":"MOD:00903"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine","synonyms":[{"name":"(3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5'-adenosine","type":"exact"},{"name":"(3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine","type":"related"},{"name":"5'-O-[(3-aminopropoxy)(L-aspart-1-ylamino)phosphoryl]adenosine","type":"exact"},{"name":"9-(5'-O-[(3-aminopropoxy)(L-aspart-1-ylamino)phosphoryl]-beta-D-ribofuranosyl)adenine","type":"exact"},{"name":"C-Asn-deriv","type":"related"},{"name":"MOD_RES Aspartic acid 1-[(3-aminopropyl)(5'-adenosyl)phosphono]amide","type":"exact"},{"name":"N-(aspart-1-yl)-O-(3-aminopropyl)-O-(5'-adenosyl)phosphoramide","type":"exact"},{"name":"microcin C7 asparagine modification","type":"exact"}],"termid":"MOD:00333"}


id: GO:0071688
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of proteins to form the myosin-based thick filaments of myofibrils in striated muscle.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly involved in morphogenesis","termid":"GO:0010927"},{"relation_name":"is_a","term_name":"myosin filament assembly","termid":"GO:0031034"},{"relation_name":"part_of","term_name":"myofibril assembly","termid":"GO:0030239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0030036"},{"rel_name":"part_of","termid":"GO:0030036"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0030036","GO:0007010","GO:0065003"],"is_obsolete":false,"name":"striated muscle myosin thick filament assembly","termid":"GO:0071688"}


id: GO:1900300
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of laminarabiose transport.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of laminarabiose transport (obsolete GO:1900300)","termid":"GO:1900300"}


id: GO:0031276
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the assembly of pseudopodia from the lateral side of the cell.","definition_xrefs":["GOC:tb","GOC:dph","GOC:pg"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of lateral pseudopodium assembly (obsolete GO:0031276)","synonyms":[{"name":"down regulation of lateral pseudopodium formation","type":"related"},{"name":"down-regulation of lateral pseudopodium formation","type":"related"},{"name":"downregulation of lateral pseudopodium formation","type":"related"},{"name":"inhibition of lateral pseudopodium formation","type":"narrow"},{"name":"negative regulation of lateral pseudopodium formation","type":"related"}],"termid":"GO:0031276"}


id: FYPO:0002979
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin is normal (i.e. indistinguishable from wild type) during a cellular response to methyl methanesulfonate.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to chromatin during vegetative growth","termid":"FYPO:0001509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000138","FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal protein localization to chromatin during cellular response to methyl methanesulfonate","synonyms":[{"name":"normal protein localisation to chromatin during cellular response to methyl methanesulfonate","type":"exact"},{"name":"normal protein localization to chromatin during cellular response to MMS","type":"exact"},{"name":"normal protein localization to chromatin during cellular response to methyl methanesulfonate during mitotic cell cycle","type":"related"},{"name":"normal protein localization to chromatin during cellular response to methyl methanesulfonate during vegetative growth","type":"exact"},{"name":"normal protein localization to chromatin during cellular response to methyl methanesulphonate","type":"exact"}],"termid":"FYPO:0002979"}


id: GO:0042323
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the duration or quality of non-rapid eye movement (NREM) sleep.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of circadian sleep/wake cycle, sleep","termid":"GO:0042321"},{"relation_name":"is_a","term_name":"regulation of circadian sleep/wake cycle, non-REM sleep","termid":"GO:0045188"},{"relation_name":"negatively_regulates","term_name":"circadian sleep/wake cycle, non-REM sleep","termid":"GO:0042748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of circadian sleep/wake cycle, non-REM sleep","synonyms":[{"name":"down regulation of circadian sleep/wake cycle, non-REM sleep","type":"exact"},{"name":"down-regulation of circadian sleep/wake cycle, non-REM sleep","type":"exact"},{"name":"downregulation of circadian sleep/wake cycle, non-REM sleep","type":"exact"},{"name":"inhibition of circadian sleep/wake cycle, non-REM sleep","type":"narrow"},{"name":"negative regulation of non-REM sleep","type":"exact"}],"termid":"GO:0042323"}


id: PBO:0028747
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_tyrosine_phosphorylation_during_cellular_response_to_heat","termid":"PBO:0028747"}


id: GO:0004742
data:
  {"annotated_genes":["SJAG_00866","SJAG_02158"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110310,114504],"is_not":false,"summary":null,"term":"GO:0004742"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-N6-dihydrolipoyl-L-lysyl-[protein] + acetyl-CoA = (R)-N6-(S8-acetyldihydrolipoyl)-L-lysyl-[protein] + CoA.","definition_xrefs":["RHEA:17017"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-acetyltransferase activity","termid":"GO:0016418"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00866":null,"SJAG_02158":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0016746","GO:0140096","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"dihydrolipoyllysine-residue acetyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0030523","EC:2.3.1.12"],"synonyms":[{"name":"acetyl-CoA: enzyme-6-N-(dihydrolipoyl)lysine S-acetyltransferase activity","type":"related"},{"name":"acetyl-CoA: enzyme-N6-(dihydrolipoyl)lysine S-acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:dihydrolipoamide S-acetyltransferase activity","type":"related"},{"name":"dihydrolipoamide S-acetyltransferase activity","type":"exact"},{"name":"dihydrolipoamide S-acyltransferase activity","type":"related"},{"name":"dihydrolipoate acetyltransferase activity","type":"related"},{"name":"dihydrolipoic transacetylase activity","type":"related"},{"name":"dihydrolipoyl acetyltransferase activity","type":"related"},{"name":"enzyme-dihydrolipoyllysine:acetyl-CoA S-acetyltransferase activity","type":"related"},{"name":"lipoate acetyltransferase activity","type":"related"},{"name":"lipoate transacetylase activity","type":"related"},{"name":"lipoic acetyltransferase activity","type":"related"},{"name":"lipoic acid acetyltransferase activity","type":"related"},{"name":"lipoic transacetylase activity","type":"related"},{"name":"lipoylacetyltransferase activity","type":"related"},{"name":"thioltransacetylase A activity","type":"narrow"},{"name":"transacetylase X activity","type":"narrow"}],"termid":"GO:0004742","terms_by_termid":{"GO:0004742":null}}


id: PBO:0064915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP4R2 pseudogene 4","termid":"PBO:0064915"}


id: GO:0007546
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The events determining the somatic sexual phenotype after the initial transmission of that phenotype to soma-specific information pathways.","definition_xrefs":["GOC:ems"],"direct_ancestors":[{"relation_name":"is_a","term_name":"processes downstream of sex determination signal","termid":"GO:0007545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"somatic processes downstream of sex determination signal","termid":"GO:0007546"}


id: _global:interaction_genotype_a
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_relations","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interaction_genotype_a","termid":"_global:interaction_genotype_a"}


id: GO:0007637
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The extension, through direct muscle actions, of the proboscis (the trunk-like extension of the mouthparts on the adult external head) in response to a nutritional stimulus.","definition_xrefs":["GOC:jid","FB:FBrf0044924"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemosensory behavior","termid":"GO:0007635"},{"relation_name":"is_a","term_name":"behavioral response to nutrient","termid":"GO:0051780"},{"relation_name":"is_a","term_name":"reflex","termid":"GO:0060004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"proboscis extension reflex","synonyms":[{"name":"behavioral response to nutritional stimulus, proboscis extension","type":"exact"},{"name":"proboscis extension in response to nutritional stimulus","type":"exact"}],"termid":"GO:0007637"}


id: PBO:0083910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FMN-dependent NAD(P)H:quinone reductase; role in apoptosis-like cell death; may be involved in quinone detoxification; expression elevated at low temperature; sequesters the Cin5p transcription factor in the cytoplasm in complex with the proteasome under reducing conditions","termid":"PBO:0083910"}


id: GO:0102466
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-carotene + 2 NADH + 2 H+ + 2 O2 = (2R,2'R)-dihydroxy-all-trans-beta-carotene + 2 NAD + 2 H2O.","definition_xrefs":["GOC:pz","EC:1.14.13.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"beta-carotene 2,2'-beta-hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-14019"],"termid":"GO:0102466"}


id: GO:1903453
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any RNA interference that is involved in olfactory learning.","definition_xrefs":["GOC:TermGenie","PMID:23993094","GOC:kmv","GO_REF:0000060"],"gene_count":0,"genotype_count":0,"name":"obsolete RNA interference involved in olfactory learning (obsolete GO:1903453)","synonyms":[{"name":"RNAi involved in olfactory learning","type":"exact"},{"name":"posttranscriptional gene silencing by siRNA involved in olfactory learning","type":"exact"}],"termid":"GO:1903453"}


id: GO:1903983
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that increases the length of a microvillus.","definition_xrefs":["GOC:als","PMID:22114352"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell projection organization","termid":"GO:0031346"},{"relation_name":"is_a","term_name":"regulation of microvillus length","termid":"GO:0032532"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of microvillus length","synonyms":[{"name":"activation of regulation of microvillus length","type":"narrow"},{"name":"up regulation of regulation of microvillus length","type":"exact"},{"name":"up-regulation of regulation of microvillus length","type":"exact"},{"name":"upregulation of regulation of microvillus length","type":"exact"}],"termid":"GO:1903983"}


id: PR:000050514
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the alp7 gene in Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule protein alp7 (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC890.02c","synonyms":[{"name":"SPAC890.02c","type":"related"},{"name":"Spom-alp7","type":"exact"},{"name":"TACC protein mia1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"alp7","type":"related"},{"name":"altered polarity protein 7 (Schizosaccharomyces pombe)","type":"exact"},{"name":"mia1","type":"related"},{"name":"transforming acidic coiled-coil protein mia1 (Schizosaccharomyces pombe)","type":"exact"}],"termid":"PR:000050514"}


id: PBO:0058766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6890","termid":"PBO:0058766"}


id: PBO:0038621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ACER2 pseudogene 1","termid":"PBO:0038621"}


id: PBO:0039520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD33B pseudogene 1","termid":"PBO:0039520"}


id: PBO:0073703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SKI proto-oncogene","termid":"PBO:0073703"}


id: GO:0075110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont activates, maintains or increases the frequency, rate or extent of receptor-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by symbiont of host receptor-mediated signal transduction (obsolete GO:0075110)","synonyms":[{"name":"positive regulation by symbiont of host receptor-mediated signal transduction","type":"exact"}],"termid":"GO:0075110"}


id: GO:0090372
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of the directed movement of glycerol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:jh","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transmembrane transport","termid":"GO:0034764"},{"relation_name":"is_a","term_name":"regulation of glycerol transport","termid":"GO:0090371"},{"relation_name":"positively_regulates","term_name":"glycerol transmembrane transport","termid":"GO:0015793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of glycerol transport","termid":"GO:0090372"}


id: FYPO:0001712
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of coenzyme Q10 measured in a cell is too low to detect.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"substance absent from cell during vegetative growth","termid":"FYPO:0001208"},{"relation_name":"is_a","term_name":"decreased cellular coenzyme Q10 level","termid":"FYPO:0006978"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"coenzyme Q10 absent from cell","synonyms":[{"name":"UQ-10 absent from cell","type":"exact"},{"name":"coenzyme Q10 absent from cell during mitotic cell cycle","type":"related"},{"name":"coenzyme Q10 absent from cell during vegetative growth","type":"exact"},{"name":"ubiquinone 10 absent from cell","type":"exact"}],"termid":"FYPO:0001712"}


id: PBO:0079784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP glucuronosyltransferase family 1 member A5","termid":"PBO:0079784"}


id: PBO:0076400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein associated factor, RNA polymerase I subunit B","termid":"PBO:0076400"}


id: GO:0003236
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the sinus venosus is generated and organized. The sinus venosus is a heart chamber attached to the atrium on the venous side of the embryonic heart.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac chamber morphogenesis","termid":"GO:0003206"},{"relation_name":"part_of","term_name":"sinus venosus development","termid":"GO:0003235"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sinus venosus morphogenesis","termid":"GO:0003236"}


id: PBO:0084330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Killer toxin; encoded on the left arm of chromosome IX in some strains, including YJM789","termid":"PBO:0084330"}


id: PBO:0071843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 38","termid":"PBO:0071843"}


id: GO:0036070
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a bacteriochlorophyll, which occur in the absence of light. Bacteriochlorophylls are any of the chlorophylls of photosynthetic bacteria; they differ structurally from the chlorophylls of higher plants.","definition_xrefs":["GOC:yaf","PMID:12242396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacteriochlorophyll biosynthetic process","termid":"GO:0030494"},{"relation_name":"is_a","term_name":"light-independent chlorophyll biosynthetic process","termid":"GO:0036068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"light-independent bacteriochlorophyll biosynthetic process","synonyms":[{"name":"light independent bacteriochlorophyll biosynthetic process","type":"exact"},{"name":"light-independent bacteriochlorophyll anabolism","type":"exact"},{"name":"light-independent bacteriochlorophyll biosynthesis","type":"exact"},{"name":"light-independent bacteriochlorophyll formation","type":"exact"},{"name":"light-independent bacteriochlorophyll synthesis","type":"exact"}],"termid":"GO:0036070"}


id: PBO:0040383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting accessory protein 1 like (pseudogene)","termid":"PBO:0040383"}


id: GO:0071187
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the cell adhesion molecules protocadherin-alpha-v4 and protocadherin-gamma-b4, and is involved in the regulation of protein localization to the plasma membrane.","definition_xrefs":["PMID:15347688"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protocadherin-alpha-protocadherin-gamma complex","termid":"GO:0071183"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"protocadherin-alpha-v4-protocadherin-gamma-b4 complex","synonyms":[{"name":"Pcdhga1-Pcdhgb4 complex","type":"narrow"}],"termid":"GO:0071187"}


id: GO:1900028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of ruffle assembly.","definition_xrefs":["GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of plasma membrane bounded cell projection assembly","termid":"GO:0120033"},{"relation_name":"is_a","term_name":"regulation of ruffle assembly","termid":"GO:1900027"},{"relation_name":"negatively_regulates","term_name":"ruffle assembly","termid":"GO:0097178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"negative regulation of ruffle assembly","synonyms":[{"name":"down regulation of membrane ruffle formation","type":"exact"},{"name":"down regulation of membrane ruffling","type":"exact"},{"name":"down regulation of ruffle assembly","type":"related"},{"name":"negative regulation of membrane ruffle formation","type":"exact"},{"name":"negative regulation of membrane ruffling","type":"exact"}],"termid":"GO:1900028"}


id: PBO:0041591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbonic anhydrase 5A","termid":"PBO:0041591"}


id: GO:0003378
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A sphingosine-1-phosphate signaling pathway that modulates the rate, frequency, or extent of the inflammatory response.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of inflammatory response by sphingosine-1-phosphate signaling pathway (obsolete GO:0003378)","synonyms":[{"name":"regulation of inflammatory response by sphingolipid signaling pathway","type":"broad"},{"name":"regulation of inflammatory response by sphingolipid signalling pathway","type":"broad"}],"termid":"GO:0003378"}


id: PBO:0061335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear pore complex interacting protein family, member B13","termid":"PBO:0061335"}


id: PBO:0074550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA host gene 3","termid":"PBO:0074550"}


id: PBO:0044319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c1","termid":"PBO:0044319"}


id: FYPO:0000781
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription occurs to a lower extent than normal. All genes, or a specific subset of genes, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"},{"relation_name":"is_a","term_name":"decreased transcription","termid":"FYPO:0002876"},{"relation_name":"is_a","term_name":"abnormal transcription during vegetative growth","termid":"FYPO:0004064"},{"relation_name":"is_a","term_name":"abnormal regulation of transcription during vegetative growth","termid":"FYPO:0004527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0006551","FYPO:0000294","FYPO:0005447"],"is_obsolete":false,"name":"decreased transcription during vegetative growth","synonyms":[{"name":"decreased transcription during mitotic cell cycle","type":"related"},{"name":"reduced transcription during vegetative growth","type":"exact"}],"termid":"FYPO:0000781"}


id: PBO:0016109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b5 reductase Cbr1 (predicted)","termid":"PBO:0016109"}


id: PBO:0082937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic chaperone of the Hsp90 family; plays a role in determining prion variants; redundant in function and nearly identical with Hsp82p, and together they are essential; expressed constitutively at 10-fold higher basal levels than HSP82 and induced 2-3 fold by heat shock; contains two acid-rich unstructured regions that promote the solubility of chaperone-substrate complexes; HSC82 has a paralog, HSP82, that arose from the whole genome duplication","termid":"PBO:0082937"}


id: FYPO:0004940
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing chloroacetaldehyde.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002057","FYPO:0000257","FYPO:0000003","FYPO:0002060","FYPO:0002058"],"is_obsolete":false,"name":"normal growth on chloroacetaldehyde","synonyms":[{"name":"normal cell population growth in presence of chloroacetaldehyde","type":"exact"},{"name":"normal cell population growth on CAA","type":"exact"},{"name":"normal cell population growth on chloroacetaldehyde","type":"exact"},{"name":"normal cellular response to chloroacetaldehyde","type":"related"},{"name":"normal vegetative cell population growth on chloroacetaldehyde","type":"exact"}],"termid":"FYPO:0004940"}


id: PBO:0055938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 45","termid":"PBO:0055938"}


id: PBO:0003676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor, Atf-CREB family Atf1","termid":"PBO:0003676"}


id: PBO:0005898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F0-ATPase subunit 8 (predicted)","termid":"PBO:0005898"}


id: PR:Q03319
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-dependent RNA helicase DHX33 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00324","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase prh1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2G11.11c","secondary_identifiers":["UniProtKB:Q03319"],"synonyms":[{"name":"Spom972h-DHX33","type":"exact"}],"termid":"PR:Q03319"}


id: PBO:0087148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-Dependent ATPase, member of DExD/H-box family; involved in cleavage of site A3 within the ITS1 spacer during rRNA processing; not essential for growth, but deletion causes severe slow-growth phenotype","termid":"PBO:0087148"}


id: SO:0100015
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The more polar, carboxy-terminal region of the signal peptide (approx 3-7 aa).","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cleaved_peptide_region","termid":"SO:0100011"},{"relation_name":"part_of","term_name":"signal_peptide","termid":"SO:0000418"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"c_terminal_region","synonyms":[{"name":"C-region","type":"related"}],"termid":"SO:0100015"}


id: PBO:0067509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 649, pseudogene","termid":"PBO:0067509"}


id: PBO:0090260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall glucan 1,3-beta-glucosidase Exg3","termid":"PBO:0090260"}


id: GO:0035581
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of binding or confining an extracellular signaling ligand, such that the ligand is unable to bind to its cell surface receptor.","definition_xrefs":["GOC:BHF","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular negative regulation of signal transduction","termid":"GO:1900116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"sequestering of extracellular ligand from receptor","synonyms":[{"name":"extracellular sequestering of receptor ligand","type":"exact"},{"name":"negative regulation of protein bioavailability","type":"related"}],"termid":"GO:0035581"}


id: PBO:0071436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 42","termid":"PBO:0071436"}


id: GO:0006693
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring due to the formation of a bond between two carbons of a fatty acid. They have a wide range of biological activities.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prostanoid metabolic process","termid":"GO:0006692"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"prostaglandin metabolic process","synonyms":[{"name":"prostaglandin metabolism","type":"exact"}],"termid":"GO:0006693"}


id: FYPO:0007093
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more RNAs transcribed from genes encoding ribosomal proteins measured in a cell is higher than normal (i.e. higher than observed in wild-type cells).","definition_xrefs":["PomBase:mah","PMID:28388826"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0006551"],"is_obsolete":false,"name":"increased level of ribosomal protein gene mRNA during vegetative growth","synonyms":[{"name":"increased level of ribosomal protein gene RNA during vegetative growth","type":"exact"},{"name":"increased level of ribosomal protein gene mRNA during mitotic cell cycle","type":"related"},{"name":"increased level of ribosomal protein gene transcripts during vegetative growth","type":"exact"},{"name":"increased ribosomal protein gene mRNA accumulation during vegetative growth","type":"related"}],"termid":"FYPO:0007093"}


id: PBO:0000740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho family GTPase Rho3","termid":"PBO:0000740"}


id: GO:0043783
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of an oxidation-reduction in which the metal ion is reduced and flavin acts as an electron acceptor.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete oxidoreductase activity, acting on metal ions, flavin as acceptor (obsolete GO:0043783)","synonyms":[{"name":"oxidoreductase activity, oxidizing metal ions with flavin as acceptor","type":"related"},{"name":"oxidoreductase activity, reducing metal ions, flavin as acceptor","type":"related"}],"termid":"GO:0043783"}


id: GO:0016403
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N(G),N(G)-dimethyl-L-arginine + H2O = dimethylamine + L-citrulline.","definition_xrefs":["EC:3.5.3.18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016810"],"is_obsolete":false,"name":"dimethylargininase activity","secondary_identifiers":["RHEA:17305","MetaCyc:DIMETHYLARGININASE-RXN","Reactome:R-HSA-5693373"],"synonyms":[{"name":"N(G),N(G)-dimethylarginine dimethylaminohydrolase activity","type":"related"},{"name":"NG,NG-dimethyl-L-arginine dimethylamidohydrolase activity","type":"related"},{"name":"NG,NG-dimethylarginine dimethylaminohydrolase activity","type":"related"},{"name":"dimethylarginine dimethylaminohydrolase activity","type":"related"}],"termid":"GO:0016403"}


id: PBO:0073763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 3 member 1","termid":"PBO:0073763"}


id: FYPO:0007231
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a single cell is viable, and grows in the form of a spindle.","definition_xrefs":["PomBase:mah","PMID:22137473"],"direct_ancestors":[{"relation_name":"has_part","term_name":"spindle-shaped cell","termid":"FYPO:0007230"},{"relation_name":"is_a","term_name":"viable vegetative cell with abnormal cell shape","termid":"FYPO:0002197"},{"relation_name":"is_a","term_name":"spindle-shaped cell","termid":"FYPO:0007230"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000004","FYPO:0000002","FYPO:0001320","FYPO:0000005"],"is_obsolete":false,"name":"viable spindle-shaped cell","synonyms":[{"name":"viable spindle-shaped cell during mitotic cell cycle","type":"related"},{"name":"viable spindle-shaped cell during vegetative growth","type":"exact"},{"name":"viable spindle-shaped vegetative cell","type":"exact"}],"termid":"FYPO:0007231"}


id: PBO:0068093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 400","termid":"PBO:0068093"}


id: GO:0021629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the oculomotor nerve. This process pertains to the physical shaping of a rudimentary structure. The olfactory nerve is a collection of sensory nerve rootlets that extend down from the olfactory bulb to the olfactory mucosa of the upper parts of the nasal cavity. This nerve conducts odor information to the brainstem.","definition_xrefs":["GOC:jid","GO_REF:0000021","GOC:dgh","GOC:cls","GOC:dph","ISBN:0838580343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve structural organization","termid":"GO:0021604"},{"relation_name":"part_of","term_name":"olfactory nerve morphogenesis","termid":"GO:0021627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"olfactory nerve structural organization","synonyms":[{"name":"CN I structural organization","type":"related"},{"name":"olfactory nerve structural organisation","type":"exact"}],"termid":"GO:0021629"}


id: PBO:0046878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 8 member A3, pseudogene","termid":"PBO:0046878"}


id: PBO:0073351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family B member 10","termid":"PBO:0073351"}


id: PBO:0039784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aquaporin 11","termid":"PBO:0039784"}


id: GO:0046200
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of m-cresol (3-hydroxytoluene), the meta-isoform of cresol.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete m-cresol biosynthetic process (obsolete GO:0046200)","synonyms":[{"name":"m-cresol anabolism","type":"exact"},{"name":"m-cresol biosynthesis","type":"exact"},{"name":"m-cresol biosynthetic process","type":"exact"},{"name":"m-cresol formation","type":"exact"},{"name":"m-cresol synthesis","type":"exact"}],"termid":"GO:0046200"}


id: GO:0061891
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to and responding, e.g. by conformational change, to changes in the cellular level of calcium ions (Ca2+).","definition_xrefs":["PMID:17020874","PMID:16005298","PMID:28151650"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal ion sensor activity","termid":"GO:0140784"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140299"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0140299"],"is_obsolete":false,"name":"calcium ion sensor activity","termid":"GO:0061891"}


id: PBO:0049990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histidine triad nucleotide binding protein 2 pseudogene 1","termid":"PBO:0049990"}


id: PR:Q9P7D4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- aco2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7D4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homocitrate dehydratase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP4H10.15","synonyms":[{"name":"Spom972h-aco2","type":"exact"},{"name":"aconitase 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7D4"}


id: MOD:00283
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to an N6-propylamino-poly(propylmethylamino)-propyldimethylamine-L-lysine.","definition_xrefs":["PubMed:10550045","RESID:AA0278","PubMed:11349130"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N6-propylamino-poly(propylmethylamino)-propyldimethylamine-L-lysine","synonyms":[{"name":"(alpha)- ([([(5S)-5-amino-5-carboxypentyl]amino)propyl][(methyl)amino])-(omega)-methyl poly[propane-1,3-diyl(methylimino)]","type":"exact"},{"name":"MOD_RES N6-poly(methylaminopropyl)lysine","type":"exact"},{"name":"N6-[3-([(omega)-(dimethyl)aminopropyl-poly(3-[methylamino]propyl)]amino)propyl]lysine","type":"exact"},{"name":"N6-propylamino-poly(propylmethylamino)-propyldimethylamine-L-lysine","type":"exact"},{"name":"lysine derivative Lys(x)","type":"exact"},{"name":"silaffin polycationic lysine derivative","type":"exact"}],"termid":"MOD:00283"}


id: GO:0035719
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of tRNA from the cytoplasm to the nucleus.","definition_xrefs":["PMID:20032305","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA import into nucleus","termid":"GO:0006404"},{"relation_name":"is_a","term_name":"tRNA transport","termid":"GO:0051031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006913","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"tRNA import into nucleus","synonyms":[{"name":"retrograde tRNA transport into nucleus","type":"exact"},{"name":"tRNA nuclear import","type":"exact"}],"termid":"GO:0035719"}


id: PATO:0000799
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000799 muscle elevation value (obsolete PATO:0000799)","termid":"PATO:0000799"}


id: PBO:0065092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase AMP-activated non-catalytic subunit gamma 1","termid":"PBO:0065092"}


id: PBO:0049243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gastrin releasing peptide","termid":"PBO:0049243"}


id: FYPO:0000356
data:
  {"alleles_by_uniquename":{"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115400],"is_not":false,"summary":null,"term":"FYPO:0000356"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of lipid droplets is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"output_of","term_name":"abnormal lipid droplet organization","termid":"FYPO:0000808"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00426":null},"genotype_count":1,"genotypes_by_uniquename":{"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"bbl1-P363S(aa)","display_uniquename":"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00426:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal lipid droplet morphology","references_by_uniquename":{"PMID:25318672":null},"single_locus_annotated_genes":["SJAG_00426"],"single_locus_genotype_uniquenames":["bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal lipid droplet morphology during mitotic cell cycle","type":"related"},{"name":"abnormal lipid droplet morphology during vegetative growth","type":"exact"},{"name":"abnormal lipid particle morphology","type":"exact"},{"name":"lipid particle morphology: abnormal","type":"related"}],"termid":"FYPO:0000356","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000162":null,"FYPO:0000356":null,"FYPO_EXT:0000001":null}}


id: PBO:0026892
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_phosphorylation_of_RNA_polymerase_II_C-terminal_domain_serine_2_residues_during_vegetative_growth","termid":"PBO:0026892"}


id: PATO:0000251
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000251 startle reflex (obsolete PATO:0000251)","termid":"PATO:0000251"}


id: PBO:0074650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 40","termid":"PBO:0074650"}


id: PBO:0088404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNP complex","termid":"PBO:0088404"}


id: PBO:0075757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRR1 domain containing","termid":"PBO:0075757"}


id: GO:0046322
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of fatty acid oxidation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of fatty acid metabolic process","termid":"GO:0045922"},{"relation_name":"is_a","term_name":"regulation of fatty acid oxidation","termid":"GO:0046320"},{"relation_name":"negatively_regulates","term_name":"fatty acid oxidation","termid":"GO:0019395"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"negative regulation of fatty acid oxidation","synonyms":[{"name":"inhibition of fatty acid oxidation","type":"narrow"},{"name":"down regulation of fatty acid oxidation","type":"exact"},{"name":"down-regulation of fatty acid oxidation","type":"exact"},{"name":"downregulation of fatty acid oxidation","type":"exact"}],"termid":"GO:0046322"}


id: GO:0140093
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An embryonic stem cell-specific SWI/SNF-type complex that contains eight or nine proteins, including both conserved (core) and nonconserved components; contains the ATPase product of either the SMARCA4/BAF190A/BRG1 gene, the mammalian ortholog of the yeast SNF2 gene, or an ortholog thereof. Compared to many other BAF complexes never contains ACTL6B/BAF53B, ARID1B/BAF250B, SMARCA2/BRM, SMARCC2/BAF170 or SMARCD3/BAF60C but contains PHF10/BAF45A, DPF2/BAF45D and possibly one of BCL7A/B/C.","definition_xrefs":["GOC:bhm","PMID:2620226","PMID:19279218","PMID:19279220","PMID:8895581","PMID:8804307"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SWI/SNF superfamily-type complex","termid":"GO:0070603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005694","GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"esBAF complex","synonyms":[{"name":"embryonic stem cell-specific BAF complex","type":"exact"},{"name":"embryonic stem cell-specific SWI/SNF complex","type":"exact"}],"termid":"GO:0140093"}


id: GO:0033066
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A DNA recombinase mediator complex that contains the Rad51 paralogs RAD51B and RAD51C, or orthologs thereof.","definition_xrefs":["PMID:16093548","GOC:mah","PMID:17114795"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA recombinase mediator complex","termid":"GO:0033061"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"Rad51B-Rad51C complex","synonyms":[{"name":"BC complex","type":"exact"}],"termid":"GO:0033066"}


id: GO:1901113
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving erythromycin.","definition_xrefs":["UniPathway:UPA00240","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macrolide metabolic process","termid":"GO:0033067"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"erythromycin metabolic process","synonyms":[{"name":"erythromycin metabolism","type":"exact"}],"termid":"GO:1901113"}


id: GO:0090564
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + glucose(out) = protein cysteine + glucose phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport.","definition_xrefs":["GOC:am"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-phosphocysteine-sugar phosphotransferase activity","termid":"GO:0090563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0022857","GO:0016740","GO:0003824","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"protein-phosphocysteine-glucose phosphotransferase system transporter activity","termid":"GO:0090564"}


id: GO:0106244
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 8beta-hydroxygermacra-1(10),4,11(13)-trien-12-oate + O2 + reduced [NADPH--hemoprotein reductase] = eupatolide + 2 H2O + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["RHEA:57972","GOC:eab","PMID:29758164"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"eupatolide synthase activity","secondary_identifiers":["EC:1.14.14.169"],"termid":"GO:0106244"}


id: PBO:0045106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diencephalon/mesencephalon homeobox 1","termid":"PBO:0045106"}


id: PBO:0012061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial metallopeptidase predicted to be involved in tRNA threonylcarbamoyladenosine modification Pgp1","termid":"PBO:0012061"}


id: GO:0010447
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH < 7. pH is a measure of the acidity or basicity of an aqueous solution.","definition_xrefs":["Wikipedia:PH","GOC:go_curators","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to pH","termid":"GO:0009268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to acidic pH","synonyms":[{"name":"response to acidity","type":"broad"}],"termid":"GO:0010447"}


id: GO:0033806
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-threonine + fluoroacetaldehyde = acetaldehyde + 4-fluoro-L-threonine.","definition_xrefs":["RHEA:11748"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transketolase or transaldolase activity","termid":"GO:0016744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016744"}],"interesting_parent_ids":["GO:0016744","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"fluorothreonine transaldolase activity","secondary_identifiers":["EC:2.2.1.8"],"synonyms":[{"name":"fluoroacetaldehyde:L-threonine aldehydetransferase activity","type":"related"}],"termid":"GO:0033806"}


id: GO:0009537
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The precursor of other plastids.","definition_xrefs":["ISBN:0943088399"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid","termid":"GO:0009536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"proplastid","termid":"GO:0009537"}


id: PR:Q9Y7M6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nop52 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7M6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal RNA-processing protein 1 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC9B6.07","synonyms":[{"name":"Spom972h-nop52","type":"exact"}],"termid":"PR:Q9Y7M6"}


id: PBO:0041352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C4A (Rodgers blood group)","termid":"PBO:0041352"}


id: PATO:0000123
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000123 absolute length (obsolete PATO:0000123)","termid":"PATO:0000123"}


id: PBO:0028860
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_poly(A)+_mRNA_export_from_nucleus","termid":"PBO:0028860"}


id: PBO:0071503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L34 pseudogene 6","termid":"PBO:0071503"}


id: PBO:0058172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4467","termid":"PBO:0058172"}


id: PBO:0090076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol-3-phosphate O-acyltransferase Sct1/Gpt1-like","termid":"PBO:0090076"}


id: PBO:0041368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 4 open reading frame 46","termid":"PBO:0041368"}


id: GO:0015133
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of uronic acid from one side of a membrane to the other. Uronic acids are any monocarboxylic acid formally derived by oxidizing to a carboxyl group the terminal hydroxymethylene group of either an aldose with four or more carbon atoms in the molecule, or of any glycoside derived from such an aldose.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transmembrane transporter activity","termid":"GO:0008028"},{"relation_name":"is_a","term_name":"monosaccharide transmembrane transporter activity","termid":"GO:0015145"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"uronic acid transmembrane transporter activity","termid":"GO:0015133"}


id: PBO:0051590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 20 receptor subunit beta","termid":"PBO:0051590"}


id: PBO:0056509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallo-beta-lactamase domain containing 1","termid":"PBO:0056509"}


id: GO:0052162
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism modulates the frequency, rate or extent of calcium ion fluxes as part of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host cellular process","termid":"GO:0044068"},{"relation_name":"is_a","term_name":"regulation of calcium-mediated signaling","termid":"GO:0050848"},{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host defense response","termid":"GO:0052031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"modulation by symbiont of defense-related host calcium ion flux","secondary_identifiers":["GO:0052301"],"synonyms":[{"name":"modulation by organism of defense-related calcium ion flux in other organism involved in symbiotic interaction","type":"broad"},{"name":"modulation by organism of defense-related host Ca2+ flux","type":"exact"}],"termid":"GO:0052162"}


id: MOD:01647
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively removes or replaces an L-threonine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-threonine residue","termid":"MOD:00917"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue removal","termid":"MOD:01651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-threonine removal","termid":"MOD:01647"}


id: PBO:0031252
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_targeting_via_MVB_pathway","termid":"PBO:0031252"}


id: PBO:0030329
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_cellular_phosphoinositide_level","termid":"PBO:0030329"}


id: GO:0042369
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of vitamin D, any of a group of related, fat-soluble compounds that are derived from delta-5,7 steroids and play a central role in calcium metabolism. Specific forms of vitamin D include calciferol (ergocalciferol; vitamin D2) and cholecalciferol (calciol; vitamin D3).","definition_xrefs":["ISBN:0471331309","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid catabolic process","termid":"GO:0006706"},{"relation_name":"is_a","term_name":"vitamin D metabolic process","termid":"GO:0042359"},{"relation_name":"is_a","term_name":"fat-soluble vitamin catabolic process","termid":"GO:0042363"},{"relation_name":"is_a","term_name":"organic hydroxy compound catabolic process","termid":"GO:1901616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006766","GO:0008150","GO:0006629","GO:0044248"],"is_obsolete":false,"name":"vitamin D catabolic process","synonyms":[{"name":"calciferol catabolic process","type":"narrow"},{"name":"calciferol catabolism","type":"narrow"},{"name":"cholecalciferol biosynthesis","type":"narrow"},{"name":"cholecalciferol biosynthetic process","type":"narrow"},{"name":"ergocalciferol biosynthesis","type":"narrow"},{"name":"ergocalciferol biosynthetic process","type":"narrow"},{"name":"vitamin D breakdown","type":"exact"},{"name":"vitamin D catabolism","type":"exact"},{"name":"vitamin D degradation","type":"exact"}],"termid":"GO:0042369"}


id: GO:0009648
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species.","definition_xrefs":["GOC:jid","ISBN:0697037754","GOC:pj","ISBN:0709408862","ISBN:0582015952"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to light stimulus","termid":"GO:0009416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"photoperiodism","secondary_identifiers":["Wikipedia:Photoperiodism"],"synonyms":[{"name":"response to day length","type":"exact"},{"name":"response to night length","type":"exact"},{"name":"response to photoperiod","type":"exact"}],"termid":"GO:0009648"}


id: GO:0033495
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ferulate, (2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ferulate metabolic process","termid":"GO:0033494"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"},{"relation_name":"is_a","term_name":"olefinic compound biosynthetic process","termid":"GO:0120255"},{"relation_name":"is_a","term_name":"ether biosynthetic process","termid":"GO:1901503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"ferulate biosynthetic process","secondary_identifiers":["MetaCyc:PWY-5168"],"synonyms":[{"name":"ferulate anabolism","type":"exact"},{"name":"ferulate biosynthesis","type":"exact"},{"name":"ferulate formation","type":"exact"},{"name":"ferulate synthesis","type":"exact"}],"termid":"GO:0033495"}


id: PBO:0071832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 27","termid":"PBO:0071832"}


id: PBO:0049165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRAM domain containing 4 pseudogene 7","termid":"PBO:0049165"}


id: GO:0060207
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The estrous cycle phase which is a period of sexual quiescence and represents the phase of the mature corpus luteum.","definition_xrefs":["ISBN:0721662544","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"estrous cycle phase","termid":"GO:0060206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"diestrus","termid":"GO:0060207"}


id: PBO:0001951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor Ace2","termid":"PBO:0001951"}


id: GO:0072126
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of glomerular mesangial cell proliferation.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glomerular mesangial cell proliferation","termid":"GO:0072124"},{"relation_name":"is_a","term_name":"positive regulation of cell proliferation involved in kidney development","termid":"GO:1901724"},{"relation_name":"positively_regulates","term_name":"glomerular mesangial cell proliferation","termid":"GO:0072110"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of glomerular mesangial cell proliferation","termid":"GO:0072126"}


id: GO:0043266
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of metal ion transport","termid":"GO:0010959"},{"relation_name":"regulates","term_name":"potassium ion transport","termid":"GO:0006813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of potassium ion transport","synonyms":[{"name":"regulation of K+ conductance","type":"narrow"},{"name":"regulation of K+ transport","type":"exact"},{"name":"regulation of potassium conductance","type":"narrow"},{"name":"regulation of potassium ion conductance","type":"narrow"},{"name":"regulation of potassium transport","type":"exact"}],"termid":"GO:0043266"}


id: PBO:0057015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 103b-2","termid":"PBO:0057015"}


id: FYPO:0001135
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of the 35S rRNA primary transcript measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased rRNA precursor level","termid":"FYPO:0003600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"increased 35S rRNA precursor level","synonyms":[{"name":"increased 35S rRNA precursor accumulation","type":"related"},{"name":"increased 35S rRNA precursor level during mitotic cell cycle","type":"related"},{"name":"increased 35S rRNA precursor level during vegetative growth","type":"exact"},{"name":"increased 35S rRNA precursor transcript level","type":"exact"},{"name":"increased 35S rRNA primary transcript level","type":"exact"}],"termid":"FYPO:0001135"}


id: GO:1900617
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of emericellamide A.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"emericellamide biosynthetic process","termid":"GO:1900557"},{"relation_name":"is_a","term_name":"emericellamide A metabolic process","termid":"GO:1900615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0019748","GO:0006629"],"is_obsolete":false,"name":"emericellamide A biosynthetic process","synonyms":[{"name":"emericellamide A anabolism","type":"exact"},{"name":"emericellamide A biosynthesis","type":"exact"},{"name":"emericellamide A formation","type":"exact"},{"name":"emericellamide A synthesis","type":"exact"}],"termid":"GO:1900617"}


id: GO:0008782
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-homocysteine + H2O = adenine + S-D-ribosyl-L-homocysteine.","definition_xrefs":["EC:3.2.2.9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing N-glycosyl compounds","termid":"GO:0016799"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787","GO:0016798"],"is_obsolete":false,"name":"adenosylhomocysteine nucleosidase activity","secondary_identifiers":["RHEA:17805","MetaCyc:ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN"],"synonyms":[{"name":"5'-methyladenosine nucleosidase activity","type":"related"},{"name":"AdoHcy/MTA nucleosidase activity","type":"related"},{"name":"S-adenosyl-L-homocysteine homocysteinylribohydrolase activity","type":"related"},{"name":"S-adenosylhomocysteine hydrolase activity","type":"broad"},{"name":"S-adenosylhomocysteine nucleosidase activity","type":"related"},{"name":"S-adenosylhomocysteine/5'-methylthioadenosine nucleosidase activity","type":"related"}],"termid":"GO:0008782"}


id: GO:0035792
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A postsynaptic membrane that is part of a host cell. A postsynaptic membrane is a specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters transmit the signal across the synaptic cleft to the postsynaptic membrane.","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"},{"relation_name":"part_of","term_name":"host cell membrane","termid":"GO:0033644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell postsynaptic membrane","synonyms":[{"name":"other organism post-synaptic membrane","type":"exact"},{"name":"other organism postsynaptic membrane","type":"related"}],"termid":"GO:0035792"}


id: GO:0035342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of inosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of purine nucleoside transport","termid":"GO:0032248"},{"relation_name":"is_a","term_name":"regulation of inosine transport","termid":"GO:0035341"},{"relation_name":"positively_regulates","term_name":"inosine transport","termid":"GO:0035340"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of inosine transport","synonyms":[{"name":"positive regulation of hypoxanthine riboside transport","type":"exact"}],"termid":"GO:0035342"}


id: GO:0097121
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex consisting of cyclin A1 and cyclin-dependent kinase 1 (CDK1). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner.","definition_xrefs":["GOC:so","PMID:15935619"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent protein kinase holoenzyme complex","termid":"GO:0000307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"cyclin A1-CDK1 complex","termid":"GO:0097121"}


id: PBO:0068792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 29, pseudogene","termid":"PBO:0068792"}


id: GO:0052512
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The increase by an organism of the levels of hormones or growth regulators in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by organism of hormone or growth regulator levels in symbiont (obsolete GO:0052512)","synonyms":[{"name":"positive modulation of hormone or growth regulator levels in symbiont","type":"exact"},{"name":"positive regulation by organism of hormone or growth regulator levels in symbiont","type":"exact"}],"termid":"GO:0052512"}


id: GO:1901528
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any hydrogen peroxide mediated signaling pathway that is involved in stomatal movement.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete hydrogen peroxide mediated signaling pathway involved in stomatal movement (obsolete GO:1901528)","synonyms":[{"name":"H2O2 mediated signaling pathway involved in stomatal movement","type":"exact"},{"name":"hydrogen peroxide mediated signalling pathway involved in stomatal movement","type":"exact"}],"termid":"GO:1901528"}


id: MOD:01577
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a residue with the Applied Biosystems iTRAQ8plex-121 reporter+balance group.","definition_xrefs":["Unimod:731"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(13)C isotope tagged reagent","termid":"MOD:01428"},{"relation_name":"is_a","term_name":"(15)N isotope tagged reagent","termid":"MOD:01429"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent acylated residue","termid":"MOD:01526"},{"relation_name":"is_a","term_name":"modifications with monoisotopic mass differences that are nominally equal at 304.199039 Da","termid":"MOD:01584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ8plex-121 reporter+balance reagent acylated residue","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Accurate mass for 115, 118, 119 & 121","type":"related"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"iTRAQ8plex:13C(6)15N(2)","type":"related"}],"termid":"MOD:01577"}


id: MOD:01844
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue and an L-leucine residue to 2-(3-methylbutanoyl)-5-hydroxyoxazole-4-carbothionic acid.","definition_xrefs":["PubMed:18729522","RESID:AA0550","PubMed:15361623","PubMed:20961038","PubMed:21254756"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxazole/oxazoline ring crosslinked residues (Cys)","termid":"MOD:01856"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"},{"relation_name":"is_a","term_name":"crosslinked L-leucine residue","termid":"MOD:02050"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-(3-methylbutanoyl)-5-hydroxyoxazole-4-carbothionic acid","synonyms":[{"name":"(4Z)-4-[hydroxy(sulfanyl)methylidene]-2-(3-methylbutanoyl)-1,3-oxazol-5(4H)-one [tautomer]","type":"exact"},{"name":"2-(3-methylbutanoyl)-5-hydroxyoxazole-4-carbothionic acid","type":"exact"},{"name":"5-hydroxy-2-(3-methylbutanoyl)-1,3-oxazole-4-carbothioic O-acid","type":"exact"},{"name":"MOD_RES 2-(3-methylbutanoyl)-5-hydroxyoxazole-4-carbothionic acid (Leu-Cys)","type":"exact"}],"termid":"MOD:01844"}


id: PBO:0051234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable (II)-33-1 (pseudogene)","termid":"PBO:0051234"}


id: PBO:0109082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3106","termid":"PBO:0109082"}


id: PBO:0072147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 24","termid":"PBO:0072147"}


id: GO:1904007
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of phospholipase D activity.","definition_xrefs":["GOC:TermGenie","GO_REF:0000059","PMID:11211872"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of phospholipase activity","termid":"GO:0010518"},{"relation_name":"is_a","term_name":"regulation of phospholipase D activity","termid":"GO:1904005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of phospholipase D activity","synonyms":[{"name":"activation of choline phosphatase activity","type":"narrow"},{"name":"activation of lecithinase D activity","type":"narrow"},{"name":"activation of lipophosphodiesterase II activity","type":"narrow"},{"name":"activation of phosphatidylcholine phosphatidohydrolase activity","type":"narrow"},{"name":"activation of phospholipase D activity","type":"narrow"},{"name":"positive regulation of choline phosphatase activity","type":"exact"},{"name":"positive regulation of lecithinase D activity","type":"exact"},{"name":"positive regulation of lipophosphodiesterase II activity","type":"exact"},{"name":"positive regulation of phosphatidylcholine phosphatidohydrolase activity","type":"exact"},{"name":"up regulation of choline phosphatase activity","type":"exact"},{"name":"up regulation of lecithinase D activity","type":"exact"},{"name":"up regulation of lipophosphodiesterase II activity","type":"exact"},{"name":"up regulation of phosphatidylcholine phosphatidohydrolase activity","type":"exact"},{"name":"up regulation of phospholipase D activity","type":"exact"},{"name":"up-regulation of choline phosphatase activity","type":"exact"},{"name":"up-regulation of lecithinase D activity","type":"exact"},{"name":"up-regulation of lipophosphodiesterase II activity","type":"exact"},{"name":"up-regulation of phosphatidylcholine phosphatidohydrolase activity","type":"exact"},{"name":"up-regulation of phospholipase D activity","type":"exact"},{"name":"upregulation of choline phosphatase activity","type":"exact"},{"name":"upregulation of lecithinase D activity","type":"exact"},{"name":"upregulation of lipophosphodiesterase II activity","type":"exact"},{"name":"upregulation of phosphatidylcholine phosphatidohydrolase activity","type":"exact"},{"name":"upregulation of phospholipase D activity","type":"exact"}],"termid":"GO:1904007"}


id: PBO:0031409
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_cell","termid":"PBO:0031409"}


id: GO:0039008
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a pronephric nephron tubule are generated and organized from an epithelium. A pronephric nephron tubule is an epithelial tube that is part of the pronephric nephron.","definition_xrefs":["GOC:mtg_kidney_jan10","ZFA:00001558"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron tubule morphogenesis","termid":"GO:0072078"},{"relation_name":"part_of","term_name":"pronephric nephron morphogenesis","termid":"GO:0039007"},{"relation_name":"part_of","term_name":"pronephric nephron tubule development","termid":"GO:0039020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pronephric nephron tubule morphogenesis","termid":"GO:0039008"}


