# terms

id: FYPO:0009087
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of higher concentrations of magnesium chloride and sodium dodecyl sulfate than normal.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0002682"],"is_obsolete":false,"name":"resistance to magnesium chloride and sodium dodecyl sulfate","synonyms":[{"name":"resistance to magnesium chloride and SDS","type":"exact"},{"name":"resistance to magnesium chloride and SDS during vegetative growth","type":"exact"},{"name":"resistance to magnesium chloride and SDS in combination","type":"exact"},{"name":"resistance to magnesium chloride and sodium dodecyl sulfate during mitotic cell cycle","type":"related"},{"name":"resistance to magnesium chloride and sodium dodecyl sulfate during vegetative growth","type":"exact"},{"name":"resistance to magnesium chloride and sodium dodecyl sulfate in combination","type":"exact"},{"name":"resistant to magnesium chloride and SDS","type":"exact"},{"name":"resistant to magnesium chloride and sodium dodecyl sulfate","type":"exact"}],"termid":"FYPO:0009087"}


id: PBO:0079458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"terminal uridylyl transferase 7","termid":"PBO:0079458"}


id: PBO:0059554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded tRNA-Val (GUN)","termid":"PBO:0059554"}


id: PBO:0045820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 10","termid":"PBO:0045820"}


id: FYPO:0004488
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the methylation of one or more lysine residues in specific proteins, or at specific protein sites, does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein modification during vegetative growth","termid":"FYPO:0000544"},{"relation_name":"is_a","term_name":"abnormal protein acetylation during vegetative growth","termid":"FYPO:0002392"},{"relation_name":"is_a","term_name":"abolished biological process","termid":"FYPO:0005448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0001985","FYPO:0002494","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein lysine methylation during vegetative growth","synonyms":[{"name":"abolished peptidyl-lysine methylation during vegetative growth","type":"exact"},{"name":"abolished protein acetylation during mitotic cell cycle","type":"related"},{"name":"protein lysine methylation abolished during vegetative growth","type":"exact"},{"name":"protein lysine methylation absent during vegetative growth","type":"exact"}],"termid":"FYPO:0004488"}


id: PBO:0056528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melanocortin 5 receptor","termid":"PBO:0056528"}


id: PBO:0078596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 60 pseudogene 9, Y-linked","termid":"PBO:0078596"}


id: PBO:0075041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-4","termid":"PBO:0075041"}


id: PBO:0045371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPH5 divergent transcript","termid":"PBO:0045371"}


id: PBO:0036326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxisomal protein Pex11 paralog (predicted)","termid":"PBO:0036326"}


id: PBO:0113239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclear decapping endonuclease; targets mRNAs with unmethylated 7-methylguanosine cap structures and 5'-triphosphates; binds to and stabilizes the exoribonuclease Rat1p; required for pre-rRNA processing; involved in an early step of decapping non-canonical nicotinamide adenine dinucleotide (NAD) capped nuclear mRNAs (NAD-RNAs), part of ncRNA surveillance; relocalizes to the cytosol in response to hypoxia; homologous to human DOM3Z","termid":"PBO:0113239"}


id: PBO:0062968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A) binding protein cytoplasmic 1 pseudogene 11","termid":"PBO:0062968"}


id: PBO:0061655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear FMR1 interacting protein 2","termid":"PBO:0061655"}


id: PR:O94492
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glutamate-1-semialdehyde 2,1-aminomutase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04783","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized aminotransferase C417.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC417.11c","secondary_identifiers":["UniProtKB:O94492"],"synonyms":[{"name":"Spom972h-hemL","type":"exact"}],"termid":"PR:O94492"}


id: PBO:0088699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly protein Pet117","termid":"PBO:0088699"}


id: GO:0070798
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cleistothecium development, a process that leads to the formation of a cleistothecium. The cleistothecium is a closed sexual fruiting body that contains ascospores in linear asci, characteristic of some filamentous Ascomycete fungi such as members of the genera Aspergillus and Emericella.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cleistothecium development","termid":"GO:0070796"},{"relation_name":"is_a","term_name":"positive regulation of sporocarp development involved in sexual reproduction","termid":"GO:1902060"},{"relation_name":"positively_regulates","term_name":"cleistothecium development","termid":"GO:0070791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cleistothecium development","termid":"GO:0070798"}


id: PBO:0042483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDH8 antisense RNA 1","termid":"PBO:0042483"}


id: PBO:0068616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 68, pseudogene","termid":"PBO:0068616"}


id: SO:1000120
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000120 sequence_variant_causing_inactive_catalytic_site (obsolete SO:1000120)","synonyms":[{"name":"mutation causing inactive catalytic site","type":"related"},{"name":"sequence variant causing inactive catalytic site","type":"exact"}],"termid":"SO:1000120"}


id: PBO:0060029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4 pseudogene 17","termid":"PBO:0060029"}


id: PBO:0063607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"platelet factor 4 variant 1","termid":"PBO:0063607"}


id: GO:0075019
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont appressorium formation.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of appressorium formation","termid":"GO:0075017"},{"relation_name":"negatively_regulates","term_name":"appressorium formation","termid":"GO:0075016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of appressorium formation","synonyms":[{"name":"negative regulation of appressorium formation on or near host","type":"related"}],"termid":"GO:0075019"}


id: FYPO:0004871
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a 2-oxoglutarate-dependent dioxygenase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal dioxygenase activity","termid":"FYPO:0004364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000661","FYPO:0000654","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"abnormal 2-oxoglutarate dioxygenase activity","synonyms":[{"name":"abnormal 2-oxoglutarate-dependent dioxygenase activity","type":"exact"},{"name":"abnormal oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors","type":"exact"}],"termid":"FYPO:0004871"}


id: PBO:0048761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GMCL1 pseudogene 2","termid":"PBO:0048761"}


id: PBO:0061459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nebulin related anchoring protein","termid":"PBO:0061459"}


id: GO:0060827
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the rate, frequency, or extent of Wnt signaling through beta-catenin that results in the formation of the neural plate anterior/posterior pattern.","definition_xrefs":["GOC:tb","GOC:dph","GOC:sdb_2009"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation (obsolete GO:0060827)","synonyms":[{"name":"regulation of Wnt receptor signaling pathway through beta-catenin involved in neural plate anterior/posterior pattern formation","type":"exact"},{"name":"regulation of canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation","type":"exact"},{"name":"regulation of canonical Wnt receptor signalling pathway involved in neural plate anterior/posterior pattern formation","type":"exact"},{"name":"regulation of canonical Wnt-activated signaling pathway involved in neural plate anterior/posterior pattern formation","type":"exact"}],"termid":"GO:0060827"}


id: PBO:0057807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3129","termid":"PBO:0057807"}


id: PBO:0000895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor Rst2","termid":"PBO:0000895"}


id: PBO:0002999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"formamidase-like protein (predicted)","termid":"PBO:0002999"}


id: PBO:0085666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in nucleolar integrity and processing of pre-rRNA; has a role in processing rRNA for the 60S ribosome subunit; transcript is induced in response to cytotoxic stress but not genotoxic stress; relocalizes from nucleus to nucleolus upon DNA replication stress","termid":"PBO:0085666"}


id: GO:0070086
data:
  {"annotated_genes":["SJAG_04466","SJAG_02789","SJAG_00032","SJAG_01686","SJAG_03643","SJAG_03404","SJAG_04051","SJAG_00803"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88281,92356,101742,104083,107048,108335,113524,114846],"is_not":false,"summary":null,"term":"GO:0070086"}]},"cv_name":"biological_process","definition":"Endocytosis of a protein that requires the substrate to be modified by ubiquitination. Several plasma membrane proteins, including cell surface permeases and some receptors, are targeted for internalization by endocytosis, and are thereafter delivered to the vacuole or lysosome, where they are degraded.","definition_xrefs":["PMID:9409540","GOC:mah","GOC:jp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endocytosis","termid":"GO:0006897"},{"relation_name":"is_a","term_name":"protein transport","termid":"GO:0015031"},{"relation_name":"is_a","term_name":"establishment of protein localization to organelle","termid":"GO:0072594"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00032":null,"SJAG_00803":null,"SJAG_01686":null,"SJAG_02789":null,"SJAG_03404":null,"SJAG_03643":null,"SJAG_04051":null,"SJAG_04466":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016192","GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"ubiquitin-dependent endocytosis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ubiquitin-mediated endocytosis","type":"exact"}],"termid":"GO:0070086","terms_by_termid":{"GO:0070086":null}}


id: PBO:0086684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by homology to uncharacterized proteins in other fungi","termid":"PBO:0086684"}


id: PBO:0002033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-splicing endonuclease subunit Sen15 (predicted)","termid":"PBO:0002033"}


id: GO:0018082
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of (Z)-dehydrobutyrine by the dehydration of peptidyl-threonine.","definition_xrefs":["RESID:AA0182"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-threonine modification","termid":"GO:0018210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-(Z)-dehydrobutyrine biosynthetic process from peptidyl-threonine","synonyms":[{"name":"peptidyl-(Z)-dehydrobutyrine anabolism from peptidyl-threonine","type":"exact"},{"name":"peptidyl-(Z)-dehydrobutyrine formation from peptidyl-threonine","type":"exact"},{"name":"peptidyl-(Z)-dehydrobutyrine synthesis from peptidyl-threonine","type":"exact"}],"termid":"GO:0018082"}


id: GO:0045655
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of monocyte differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of myeloid leukocyte differentiation","termid":"GO:0002761"},{"relation_name":"regulates","term_name":"monocyte differentiation","termid":"GO:0030224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of monocyte differentiation","termid":"GO:0045655"}


id: PBO:0045208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJC3 divergent transcript","termid":"PBO:0045208"}


id: PBO:0067143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 191, pseudogene","termid":"PBO:0067143"}


id: GO:1905065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vascular smooth muscle cell differentiation.","definition_xrefs":["GOC:TermGenie","PMID:19088079","GOC:BHF","GOC:BHF_miRNA","GOC:rph","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of smooth muscle cell differentiation","termid":"GO:0051152"},{"relation_name":"is_a","term_name":"regulation of vascular associated smooth muscle cell differentiation","termid":"GO:1905063"},{"relation_name":"positively_regulates","term_name":"vascular associated smooth muscle cell differentiation","termid":"GO:0035886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of vascular associated smooth muscle cell differentiation","synonyms":[{"name":"activation of VSMC differentiation","type":"narrow"},{"name":"activation of vascular associated smooth muscle cell differentiation","type":"narrow"},{"name":"activation of vascular smooth muscle cell differentiation","type":"narrow"},{"name":"positive regulation of VSMC differentiation","type":"exact"},{"name":"positive regulation of vascular smooth muscle cell differentiation","type":"exact"},{"name":"up regulation of VSMC differentiation","type":"exact"},{"name":"up regulation of vascular associated smooth muscle cell differentiation","type":"exact"},{"name":"up regulation of vascular smooth muscle cell differentiation","type":"exact"},{"name":"up-regulation of VSMC differentiation","type":"exact"},{"name":"up-regulation of vascular associated smooth muscle cell differentiation","type":"exact"},{"name":"up-regulation of vascular smooth muscle cell differentiation","type":"exact"},{"name":"upregulation of VSMC differentiation","type":"exact"},{"name":"upregulation of vascular associated smooth muscle cell differentiation","type":"exact"},{"name":"upregulation of vascular smooth muscle cell differentiation","type":"exact"}],"termid":"GO:1905065"}


id: GO:0004772
data:
  {"annotated_genes":["SJAG_04059","SJAG_04049"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84877,114859],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034737"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acyl-CoA + a sterol = CoA + a sterol ester.","definition_xrefs":["EC:2.3.1.26","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04049":null,"SJAG_04059":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016746","GO:0003824"],"is_obsolete":false,"name":"sterol O-acyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0017066"],"synonyms":[{"name":"sterol-ester synthase activity","type":"related"},{"name":"sterol-ester synthetase activity","type":"related"}],"termid":"GO:0004772","terms_by_termid":{"GO:0034737":null}}


id: PBO:0029800
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-thick_actin_cables","termid":"PBO:0029800"}


id: PBO:0082951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds the drug cyclosporin A; N-terminally propionylated in vivo; protein abundance increases in response to DNA replication stress","termid":"PBO:0082951"}


id: PBO:0045174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJA2 divergent transcript","termid":"PBO:0045174"}


id: PBO:0042897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement factor H related 1","termid":"PBO:0042897"}


id: PBO:0057643
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1234","termid":"PBO:0057643"}


id: GO:0034609
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Insertion of the male copulatory spicules into the hermaphrodite. Spicule insertion behavior initiates when the male cloaca contacts the vulva. During most mating encounters, the spicule tips will prod the vulva continuously until they partially penetrate, which then causes the protractors to contract completely so that the spicules extend through the vulva.","definition_xrefs":["PMID:18050467"],"direct_ancestors":[{"relation_name":"is_a","term_name":"male mating behavior","termid":"GO:0060179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spicule insertion","termid":"GO:0034609"}


id: MOD:02005
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an sulfanyl hydrogen atom of L-cysteine with an acyl group.","direct_ancestors":[{"relation_name":"is_a","term_name":"S-acylated residue","termid":"MOD:00672"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"S-acylated L-cysteine","termid":"MOD:02005"}


id: GO:0035623
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A renal system process in which glucose is taken up from the collecting ducts and proximal and distal loops of the nephron. In non-mammalian species, absorption may occur in related structures.","definition_xrefs":["PMID:11269503","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal absorption","termid":"GO:0070293"},{"relation_name":"is_a","term_name":"glucose transmembrane transport","termid":"GO:1904659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"renal glucose absorption","synonyms":[{"name":"glucose reabsorption","type":"exact"},{"name":"nephron glucose absorption","type":"exact"}],"termid":"GO:0035623"}


id: PBO:0014571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfate transmembrane transporter (predicted)","termid":"PBO:0014571"}


id: PBO:0044645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DC-STAMP domain containing 2","termid":"PBO:0044645"}


id: PBO:0029257
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_phosphorylation_during_cellular_response_to_methyl_methanesulfonate","termid":"PBO:0029257"}


id: GO:0030943
data:
  {"annotated_genes":["SJAG_03358","SJAG_01640","SJAG_04996"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95481,95592,103319],"is_not":false,"summary":null,"term":"GO:0030943"}]},"cv_name":"molecular_function","definition":"Binding to a mitochondrion targeting sequence, a specific peptide sequence that acts as a signal to localize the protein within the mitochondrion.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal sequence binding","termid":"GO:0005048"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01640":null,"SJAG_03358":null,"SJAG_04996":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005048"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005048"],"is_obsolete":false,"name":"mitochondrion targeting sequence binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mitochondrial targeting sequence binding","type":"exact"}],"termid":"GO:0030943","terms_by_termid":{"GO:0030943":null}}


id: PBO:0085727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in the nonsense-mediated mRNA decay (NMD) pathway; interacts with Nam7p and Upf3p; involved in telomere maintenance","termid":"PBO:0085727"}


id: GO:0009190
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide biosynthetic process","termid":"GO:0009165"},{"relation_name":"is_a","term_name":"cyclic nucleotide metabolic process","termid":"GO:0009187"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"cyclic nucleotide biosynthetic process","synonyms":[{"name":"cyclic nucleotide anabolism","type":"exact"},{"name":"cyclic nucleotide biosynthesis","type":"exact"},{"name":"cyclic nucleotide formation","type":"exact"},{"name":"cyclic nucleotide synthesis","type":"exact"}],"termid":"GO:0009190"}


id: GO:1900417
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A negative regulation of transcription from RNA polymerase II promoter that results in negative regulation of transmembrane transport.","definition_xrefs":["GOC:TermGenie","PMID:20404084","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transmembrane transport by negative regulation of transcription from RNA polymerase II promoter (obsolete GO:1900417)","termid":"GO:1900417"}


id: GO:0006539
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of glutamate, via the intermediate 2-oxoglutarate.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete glutamate catabolic process via 2-oxoglutarate (obsolete GO:0006539)","synonyms":[{"name":"glutamate breakdown via 2-oxoglutarate","type":"exact"},{"name":"glutamate catabolic process via 2-ketoglutarate","type":"exact"},{"name":"glutamate catabolic process via alpha-ketoglutarate","type":"exact"},{"name":"glutamate catabolic process via alpha-oxoglutarate","type":"exact"},{"name":"glutamate catabolism via 2-ketoglutarate","type":"exact"},{"name":"glutamate catabolism via alpha-ketoglutarate","type":"exact"},{"name":"glutamate catabolism via alpha-oxoglutarate","type":"exact"},{"name":"glutamate degradation via 2-oxoglutarate","type":"exact"}],"termid":"GO:0006539"}


id: FYPO:0006727
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which DNA strand elongation involved in mitotic nuclear DNA replication does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"},{"relation_name":"is_a","term_name":"abnormal mitotic DNA replication elongation","termid":"FYPO:0006730"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000293"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000631","FYPO:0000293","FYPO:0000002"],"is_obsolete":false,"name":"abolished mitotic DNA replication elongation","synonyms":[{"name":"abolished DNA strand elongation involved in mitotic DNA replication","type":"exact"},{"name":"abolished DNA strand elongation involved in nuclear cell cycle DNA replication","type":"exact"},{"name":"abolished mitotic DNA replication elongation during mitotic cell cycle","type":"related"},{"name":"abolished mitotic DNA replication elongation during vegetative growth","type":"exact"},{"name":"mitotic DNA replication elongation abolished","type":"exact"}],"termid":"FYPO:0006727"}


id: PR:Q9P3E4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC750.07c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P3E4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized GPI-anchored protein SPAC750.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC750.07c","synonyms":[{"name":"Spom972h-SPAC750.07c","type":"exact"}],"termid":"PR:Q9P3E4"}


id: PBO:0040665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bardet-Biedl syndrome 12","termid":"PBO:0040665"}


id: PBO:0050329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 31","termid":"PBO:0050329"}


id: GO:0099170
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process, acting in the postsynapse that results in modulation of chemical synaptic transmission.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of chemical synaptic transmission","termid":"GO:0050804"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"postsynaptic modulation of chemical synaptic transmission","termid":"GO:0099170"}


id: GO:0032904
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of production of nerve growth factor (NGF).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of neurotrophin production","termid":"GO:0032900"},{"relation_name":"is_a","term_name":"regulation of nerve growth factor production","termid":"GO:0032903"},{"relation_name":"negatively_regulates","term_name":"nerve growth factor production","termid":"GO:0032902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of nerve growth factor production","synonyms":[{"name":"down regulation of nerve growth factor production","type":"exact"},{"name":"down-regulation of nerve growth factor production","type":"exact"},{"name":"downregulation of nerve growth factor production","type":"exact"},{"name":"inhibition of nerve growth factor production","type":"narrow"},{"name":"negative regulation of NGF production","type":"exact"}],"termid":"GO:0032904"}


id: PBO:0086216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that binds to the Rap1p C-terminus; acts synergistically with Rif1p to help control telomere length and establish telomeric silencing; deletion results in telomere elongation; RIF2 has a paralog, ORC4, that arose from the whole genome duplication","termid":"PBO:0086216"}


id: PBO:0075463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPATA13 antisense RNA 1","termid":"PBO:0075463"}


id: FYPO:0001491
data:
  {"alleles_by_uniquename":{"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"},"SJAG_01794:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01794","name":"scd2delta","uniquename":"SJAG_01794:allele-1"},"SJAG_02013:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02013","name":"pyp1delta","uniquename":"SJAG_02013:allele-1"},"SJAG_02819:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02819","name":"efc25delta","uniquename":"SJAG_02819:allele-1"},"SJAG_03048:allele-1":{"allele_type":"amino_acid_mutation","description":"G146D","gene_uniquename":"SJAG_03048","name":"cdc2-1w","uniquename":"SJAG_03048:allele-1"},"SJAG_03453:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03453","name":"ras1delta","uniquename":"SJAG_03453:allele-1"},"SJAG_03581:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03581","name":"gef1delta","uniquename":"SJAG_03581:allele-1"},"SJAG_04280:allele-2":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-2"},"SJAG_04280:allele-3":{"allele_type":"amino_acid_mutation","description":"G788E","gene_uniquename":"SJAG_04280","name":"wee1-G788E","uniquename":"SJAG_04280:allele-3"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115330,115329,115333,115520],"is_not":false,"rel_names":["is_a","has_part"],"summary":null,"term":"FYPO:0000648"},{"annotations":[115374,115369,115380,115406],"is_not":false,"rel_names":["has_part","is_a"],"summary":null,"term":"FYPO:0002380"},{"annotations":[115331,115332,115338],"is_not":false,"rel_names":["is_a","has_part"],"summary":null,"term":"FYPO:0001877"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a vegetatively growing cell is viable.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viable cell","termid":"FYPO:0000124"},{"relation_name":"is_a","term_name":"cellular physical quality phenotype during vegetative growth","termid":"FYPO:0001321"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00514":null,"SJAG_01794":null,"SJAG_02013":null,"SJAG_02819":null,"SJAG_03048":null,"SJAG_03453":null,"SJAG_03581":null,"SJAG_04280":null},"genotype_count":9,"genotypes_by_uniquename":{"cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc2-1w(G146D aa)","display_uniquename":"cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03048:allele-1","expression":"Not assayed or wild type"}]}]},"efc25delta":{"display_name":"efc25delta","display_uniquename":"efc25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02819:allele-1","expression":"Null"}]}]},"gef1delta":{"display_name":"gef1delta","display_uniquename":"gef1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03581:allele-1","expression":"Null"}]}]},"pyp1delta":{"display_name":"pyp1delta","display_uniquename":"pyp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02013:allele-1","expression":"Null"}]}]},"ras1delta":{"display_name":"ras1delta","display_uniquename":"ras1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03453:allele-1","expression":"Null"}]}]},"scd1delta":{"display_name":"scd1delta","display_uniquename":"scd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00514:allele-1","expression":"Null"}]}]},"scd2delta":{"display_name":"scd2delta","display_uniquename":"scd2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01794:allele-1","expression":"Null"}]}]},"wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"wee1-G788E(aa)","display_uniquename":"wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-3","expression":"Not assayed or wild type"}]}]},"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"wee1-as8(T582G aa)","display_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000004","FYPO:0001320"],"is_obsolete":false,"name":"viable vegetative cell","references_by_uniquename":{"PMID:29566183":null,"PMID:30664646":null,"PMID:31150379":null},"single_locus_annotated_genes":["SJAG_04280","SJAG_03048","SJAG_00514","SJAG_03453","SJAG_02013","SJAG_03581","SJAG_01794","SJAG_02819"],"single_locus_genotype_uniquenames":["wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","ras1delta","efc25delta","gef1delta","scd2delta","pyp1delta","cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type","wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","scd1delta"],"synonyms":[{"name":"viable cell during vegetative growth","type":"exact"},{"name":"viable vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001491","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000137":null,"FYECO:0000338":null,"FYPO:0000648":null,"FYPO:0001877":null,"FYPO:0002380":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: GO:0035600
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of a methylthioether group (-SCH3) to a nucleotide in a tRNA molecule.","definition_xrefs":["PMID:20472640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA modification","termid":"GO:0006400"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006399","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"tRNA methylthiolation","termid":"GO:0035600"}


id: PBO:0052252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium channel tetramerization domain containing 21","termid":"PBO:0052252"}


id: GO:0015319
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + phosphate(out) = Na+(in) + phosphate(in).","definition_xrefs":["TC:2.A.1.14.6"],"gene_count":0,"genotype_count":0,"name":"obsolete sodium:inorganic phosphate symporter activity (obsolete GO:0015319)","synonyms":[{"name":"sodium:phosphate symporter activity","type":"exact"}],"termid":"GO:0015319"}


id: GO:0043842
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: (KDO)-lipid IVA + CMP-3-deoxy-D-manno-octulosonate = KDO2-lipid IVA + CMP, and lipid IVA + CMP-3-deoxy-D-manno-octulosonate = (KDO)-lipid IVA + CMP.","definition_xrefs":["PMID:9195966","PMID:1577828","PMID:2033061"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosyltransferase activity","termid":"GO:0016757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"Kdo transferase activity","secondary_identifiers":["MetaCyc:KDOTRANS-RXN","EC:2.4.99.13","MetaCyc:KDOTRANS2-RXN","EC:2.4.99.12","EC:2.4.99.14","EC:2.4.99.15"],"synonyms":[{"name":"3-deoxy-D-manno-octulosonic-acid transferase activity","type":"exact"},{"name":"WaaA","type":"related"},{"name":"kdtA","type":"related"}],"termid":"GO:0043842"}


id: GO:0044532
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which an organism modulates the frequency, rate or extent of apoptosis in a second organism.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic process","termid":"GO:0042981"},{"relation_name":"is_a","term_name":"regulation of killing of cells of another organism","termid":"GO:0051709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation of apoptotic process in another organism","synonyms":[{"name":"modulation of apoptotic process in other organism","type":"exact"},{"name":"regulation of apoptotic process in other organism","type":"exact"}],"termid":"GO:0044532"}


id: PBO:0111739
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dh repeats","termid":"PBO:0111739"}


id: GO:0070976
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a Toll-Interleukin receptor (TIR) domain of a protein. The TIR domain is an intracellular 200 residue domain that is found in the Toll protein, the interleukin-1 receptor (IL-1R), and MyD88; it contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components.","definition_xrefs":["GOC:mah","InterPro:IPR000157"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"TIR domain binding","synonyms":[{"name":"Toll-Interleukin receptor domain binding","type":"exact"}],"termid":"GO:0070976"}


id: PBO:0001663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Brix domain protein Rpf1 (predicted)","termid":"PBO:0001663"}


id: FYPO:0007234
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the central core of the centromeric region of a chromosome is normal (i.e. indistinguishable from wild type.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to centromere during vegetative growth","termid":"FYPO:0002574"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001320","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal protein localization to centromere central core","synonyms":[{"name":"normal protein localisation to centromere central core","type":"exact"},{"name":"normal protein localization to centromere central core during mitotic cell cycle","type":"related"},{"name":"normal protein localization to centromere central core during vegetative growth","type":"exact"}],"termid":"FYPO:0007234"}


id: PBO:0002376
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ageing","termid":"PBO:0002376"}


id: PATO:0000771
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A preference quality in a bearer by virtue of the bearer's disliking a perceived stimulus.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"preference","termid":"PATO:0000773"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aversion","termid":"PATO:0000771"}


id: FYPO:0007045
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of alkaline phosphatase activity is decreased during a cellular response to zinc ion starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased alkaline phosphatase activity","termid":"FYPO:0007042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0001985","FYPO:0000707","FYPO:0000661","FYPO:0000652"],"is_obsolete":false,"name":"decreased alkaline phosphatase activity during cellular response to zinc ion starvation","synonyms":[{"name":"decreased alkaline phosphatase activity during cellular response to zinc ion depletion","type":"exact"},{"name":"decreased alkaline phosphatase activity during cellular response to zinc ion deprivation","type":"exact"},{"name":"decreased alkaline phosphatase activity during cellular response to zinc ion limitation","type":"exact"},{"name":"decreased alkaline phosphatase activity during cellular response to zinc starvation","type":"exact"},{"name":"reduced alkaline phosphatase activity during cellular response to zinc ion starvation","type":"exact"}],"termid":"FYPO:0007045"}


id: GO:0031527
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the plasma membrane surrounding a filopodium.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell projection membrane","termid":"GO:0031253"},{"relation_name":"part_of","term_name":"filopodium","termid":"GO:0030175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"filopodium membrane","termid":"GO:0031527"}


id: PBO:0033783
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-reversed_RTS1_barrier_polarity","termid":"PBO:0033783"}


id: GO:0103011
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-alpha-D-mannose + beta-D-fructofuranose 6-phosphate = mannosylfructose-phosphate + GDP.","definition_xrefs":["EC:2.4.1.246","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016757"],"is_obsolete":false,"name":"mannosylfructose-phosphate synthase activity","secondary_identifiers":["MetaCyc:RXN-9935","RHEA:26039"],"termid":"GO:0103011"}


id: PBO:0068728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4atac small nuclear 17, pseudogene","termid":"PBO:0068728"}


id: PBO:0004747
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF complex subunit Snf59","termid":"PBO:0004747"}


id: GO:0090358
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular metabolic process","termid":"GO:0031325"},{"relation_name":"is_a","term_name":"positive regulation of amino acid metabolic process","termid":"GO:0045764"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of tryptophan metabolic process","termid":"GO:0090357"},{"relation_name":"positively_regulates","term_name":"tryptophan metabolic process","termid":"GO:0006568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"positively_regulates","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"positive regulation of tryptophan metabolic process","synonyms":[{"name":"positive regulation of tryptophan metabolism","type":"exact"}],"termid":"GO:0090358"}


id: GO:0070650
data:
  {"annotated_genes":["SJAG_03011","SJAG_00938","SJAG_02864","SJAG_04498","SJAG_04621"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112194],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061573"},{"annotations":[104159,94351,94097,85427],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071520"}]},"cv_name":"biological_process","definition":"Any cellular process that establishes the spatial arrangement of actin filament bundles within the cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin filament bundle organization","termid":"GO:0061572"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00938":null,"SJAG_02864":null,"SJAG_03011":null,"SJAG_04498":null,"SJAG_04621":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0030036"}],"interesting_parent_ids":["GO:0007010","GO:0008150","GO:0030036"],"is_obsolete":false,"name":"actin filament bundle distribution","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0070650","terms_by_termid":{"GO:0061573":null,"GO:0071520":null}}


id: GO:1900087
data:
  {"annotated_genes":["SJAG_02404","SJAG_01401","SJAG_01825","SJAG_03591","SJAG_03681","SJAG_03699","SJAG_01311","SJAG_01210","SJAG_02723"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97671,101838,101992,102675,113076],"is_not":false,"summary":null,"term":"GO:1900087"},{"annotations":[111914,97673,101995,111344,104914,87819],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007089"}]},"cv_name":"biological_process","definition":"Any signaling pathway that increases or activates a cell cycle cyclin-dependent protein kinase to modulate the switch from G1 phase to S phase of the mitotic cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of mitotic cell cycle phase transition","termid":"GO:1901992"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle G1/S phase transition","termid":"GO:1902808"},{"relation_name":"is_a","term_name":"regulation of G1/S transition of mitotic cell cycle","termid":"GO:2000045"},{"relation_name":"positively_regulates","term_name":"G1/S transition of mitotic cell cycle","termid":"GO:0000082"}],"gene_count":9,"genes_by_uniquename":{"SJAG_01210":null,"SJAG_01311":null,"SJAG_01401":null,"SJAG_01825":null,"SJAG_02404":null,"SJAG_02723":null,"SJAG_03591":null,"SJAG_03681":null,"SJAG_03699":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0044772"},{"rel_name":"positively_regulates","termid":"GO:0044772"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150","GO:0044772"],"is_obsolete":false,"name":"positive regulation of G1/S transition of mitotic cell cycle","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of G1/S transition of mitotic cell cycle","type":"narrow"},{"name":"up regulation of G1/S transition of mitotic cell cycle","type":"exact"},{"name":"up-regulation of G1/S transition of mitotic cell cycle","type":"exact"},{"name":"upregulation of G1/S transition of mitotic cell cycle","type":"exact"}],"termid":"GO:1900087","terms_by_termid":{"GO:0007089":null,"GO:1900087":null}}


id: PBO:0055587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3023","termid":"PBO:0055587"}


id: GO:1903746
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of nematode pharyngeal pumping.","definition_xrefs":["PMID:25329901","GO_REF:0000058","GOC:TermGenie","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nematode pharyngeal pumping","termid":"GO:0043051"},{"relation_name":"is_a","term_name":"positive regulation of eating behavior","termid":"GO:1904000"},{"relation_name":"positively_regulates","term_name":"nematode pharyngeal pumping","termid":"GO:0043050"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of nematode pharyngeal pumping","synonyms":[{"name":"activation of pharyngeal pumping","type":"narrow"},{"name":"activation of pumping behavior","type":"related"},{"name":"positive regulation of pumping behavior","type":"related"},{"name":"up regulation of pharyngeal pumping","type":"exact"},{"name":"up regulation of pumping behavior","type":"related"},{"name":"up-regulation of pharyngeal pumping","type":"exact"},{"name":"up-regulation of pumping behavior","type":"related"},{"name":"upregulation of pharyngeal pumping","type":"exact"},{"name":"upregulation of pumping behavior","type":"related"}],"termid":"GO:1903746"}


id: PBO:0084681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial branched-chain amino acid (BCAA) aminotransferase; preferentially involved in BCAA biosynthesis; homolog of murine ECA39; highly expressed during logarithmic phase and repressed during stationary phase; BAT1 has a paralog, BAT2, that arose from the whole genome duplication","termid":"PBO:0084681"}


id: PBO:0080449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-set and immunoglobulin domain containing 10 like","termid":"PBO:0080449"}


id: PBO:0043073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cholinergic receptor nicotinic alpha 2 subunit","termid":"PBO:0043073"}


id: GO:0048158
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The stage in mammalian oogenesis when the primordial germ cell is hardly distinguishable from other cortical cells of the ovary.","definition_xrefs":["ISBN:0198542771","GOC:mtg_sensu","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mammalian oogenesis stage","termid":"GO:0022605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oogonium stage","synonyms":[{"name":"mammalian oogenesis stage 1","type":"exact"}],"termid":"GO:0048158"}


id: PBO:0088467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichyl pyrophosphate Man7GlcNAc2 alpha-1,6-mannosyltransferase Alg12","termid":"PBO:0088467"}


id: GO:0060897
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The pattern specification process that results in the subdivision of an axis or axes of the neural plate in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment.","definition_xrefs":["GOC:dph","GOC:sdb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regionalization","termid":"GO:0003002"},{"relation_name":"is_a","term_name":"neural plate pattern specification","termid":"GO:0060896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural plate regionalization","termid":"GO:0060897"}


id: GO:1900482
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of diacylglycerol biosynthetic process.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular biosynthetic process","termid":"GO:0031328"},{"relation_name":"is_a","term_name":"positive regulation of lipid biosynthetic process","termid":"GO:0046889"},{"relation_name":"is_a","term_name":"regulation of diacylglycerol biosynthetic process","termid":"GO:1900480"},{"relation_name":"positively_regulates","term_name":"diacylglycerol biosynthetic process","termid":"GO:0006651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"positive regulation of diacylglycerol biosynthetic process","synonyms":[{"name":"activation of diacylglycerol anabolism","type":"exact"},{"name":"activation of diacylglycerol biosynthesis","type":"exact"},{"name":"activation of diacylglycerol biosynthetic process","type":"narrow"},{"name":"activation of diacylglycerol formation","type":"exact"},{"name":"activation of diacylglycerol synthesis","type":"exact"},{"name":"positive regulation of diacylglycerol anabolism","type":"exact"},{"name":"positive regulation of diacylglycerol biosynthesis","type":"exact"},{"name":"positive regulation of diacylglycerol formation","type":"exact"},{"name":"positive regulation of diacylglycerol synthesis","type":"exact"},{"name":"up regulation of diacylglycerol anabolism","type":"exact"},{"name":"up regulation of diacylglycerol biosynthesis","type":"exact"},{"name":"up regulation of diacylglycerol biosynthetic process","type":"exact"},{"name":"up regulation of diacylglycerol formation","type":"exact"},{"name":"up regulation of diacylglycerol synthesis","type":"exact"},{"name":"up-regulation of diacylglycerol anabolism","type":"exact"},{"name":"up-regulation of diacylglycerol biosynthesis","type":"exact"},{"name":"up-regulation of diacylglycerol biosynthetic process","type":"exact"},{"name":"up-regulation of diacylglycerol formation","type":"exact"},{"name":"up-regulation of diacylglycerol synthesis","type":"exact"},{"name":"upregulation of diacylglycerol anabolism","type":"exact"},{"name":"upregulation of diacylglycerol biosynthesis","type":"exact"},{"name":"upregulation of diacylglycerol biosynthetic process","type":"exact"},{"name":"upregulation of diacylglycerol formation","type":"exact"},{"name":"upregulation of diacylglycerol synthesis","type":"exact"}],"termid":"GO:1900482"}


id: GO:0071020
data:
  {"annotated_genes":["SJAG_01214","SJAG_02455"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[104883],"is_not":false,"summary":null,"term":"GO:0071020"},{"annotations":[110373],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071021"}]},"cv_name":"cellular_component","definition":"A spliceosomal complex that is formed following the second splicing event and contains the spliced product, the excised intron, and three snRNPs, including U5.","definition_xrefs":["GOC:mah","ISBN:0879695897","ISBN:0879697393","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spliceosomal complex","termid":"GO:0005681"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01214":null,"SJAG_02455":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"post-spliceosomal complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mammalian spliceosomal complex C2","type":"narrow"},{"name":"yeast spliceosomal complex A2-3","type":"narrow"}],"termid":"GO:0071020","terms_by_termid":{"GO:0071020":null,"GO:0071021":null}}


id: GO:0009650
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV.","definition_xrefs":["GOC:jl","GOC:ml"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to UV","termid":"GO:0009411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"UV protection","synonyms":[{"name":"UV resistance","type":"related"},{"name":"UV tolerance","type":"related"},{"name":"ultraviolet protection","type":"exact"},{"name":"ultraviolet resistance","type":"related"},{"name":"ultraviolet tolerance","type":"related"}],"termid":"GO:0009650"}


id: MOD:01633
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively removes or replaces an L-asparagine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-asparagine residue","termid":"MOD:00903"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue removal","termid":"MOD:01651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-asparagine removal","termid":"MOD:01633"}


id: PBO:0086320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with similarity to heat shock transcription factors; overexpression suppresses the pseudohyphal filamentation defect of a diploid mep1 mep2 homozygous null mutant; HMS2 has a paralog, SKN7, that arose from the whole genome duplication","termid":"PBO:0086320"}


id: PBO:0058648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6777","termid":"PBO:0058648"}


id: GO:0010767
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a UV damage stimulus.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage (obsolete GO:0010767)","termid":"GO:0010767"}


id: PBO:0040297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP2B1 antisense RNA 1","termid":"PBO:0040297"}


id: MOD:01951
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-glutamine residue and an L-serine residue by an ester bond and releasing ammonia to form O-(L-isoglutamyl)-L-serine.","definition_xrefs":["PubMed:17051152","RESID:AA0597#QSX"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked residues with loss of ammonia","termid":"MOD:00946"},{"relation_name":"is_a","term_name":"O-(L-isoglutamyl)-L-serine","termid":"MOD:01977"},{"relation_name":"is_a","term_name":"crosslinked L-glutamine residue","termid":"MOD:02046"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-(L-isoglutamyl)-L-serine (Gln-Ser)","synonyms":[{"name":"(2S)-2-amino-5-[(2S)-2-amino-2-carboxyethoxy]-5-oxopentanoic acid","type":"exact"},{"name":"O(beta)-(gamma-glutamyl)serine","type":"exact"},{"name":"O-(L-isoglutamyl)-L-serine","type":"exact"},{"name":"O3-(isoglutamyl)-serine","type":"exact"}],"termid":"MOD:01951"}


id: GO:1905632
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within an euchromatin.","definition_xrefs":["GO_REF:0000087","PMID:20889714","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to chromatin","termid":"GO:0071168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to euchromatin","synonyms":[{"name":"protein localisation in euchromatin","type":"exact"},{"name":"protein localisation to euchromatin","type":"exact"},{"name":"protein localization in euchromatin","type":"exact"}],"termid":"GO:1905632"}


id: PBO:0012610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate synthase Nmt1","termid":"PBO:0012610"}


id: GO:0061607
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: propionyl-CoA + peptide = CoA + N-alpha-propionylpeptide. This reaction is the propionylation of the N-terminal amino acid residue of a peptide or protein.","definition_xrefs":["PMID:23043182","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140096","GO:0003674","GO:0003824","GO:0016746","GO:0016740"],"is_obsolete":false,"name":"peptide alpha-N-propionyltransferase activity","synonyms":[{"name":"N-terminal propionyltransferase activity","type":"exact"}],"termid":"GO:0061607"}


id: PBO:0031086
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-translation_regulation_phenotype","termid":"PBO:0031086"}


id: GO:0017081
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and modulates the activity of a chloride channel.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ion channel regulator activity","termid":"GO:0099106"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0003674","GO:0098772"],"is_obsolete":false,"name":"chloride channel regulator activity","secondary_identifiers":["Reactome:R-HSA-383190"],"termid":"GO:0017081"}


id: PBO:0071497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL34 divergent transcript","termid":"PBO:0071497"}


id: PBO:0046199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin A3 family member C, pseudogene","termid":"PBO:0046199"}


id: PBO:0089503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"R3H and G-patch domain protein Sqs1","termid":"PBO:0089503"}


id: PBO:0042984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHD9 neighbor","termid":"PBO:0042984"}


id: FYPO:0007136
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a cell contains one nucleus and has an abnormally low volume.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"mononucleate vegetative cell","termid":"FYPO:0000060"},{"relation_name":"has_part","term_name":"small vegetative cell","termid":"FYPO:0000645"},{"relation_name":"is_a","term_name":"mononucleate vegetative cell","termid":"FYPO:0000060"},{"relation_name":"is_a","term_name":"small vegetative cell","termid":"FYPO:0000645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000005","FYPO:0000002"],"is_obsolete":false,"name":"small mononucleate vegetative cell","synonyms":[{"name":"small mononucleate cell during mitotic cell cycle","type":"related"},{"name":"small mononucleate cell during vegetative growth","type":"exact"}],"termid":"FYPO:0007136"}


id: GO:0030098
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized precursor cell acquires specialized features of a lymphocyte. A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin.","definition_xrefs":["GOC:go_curators","CL:0000542"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphocyte activation","termid":"GO:0046649"},{"relation_name":"is_a","term_name":"mononuclear cell differentiation","termid":"GO:1903131"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lymphocyte differentiation","secondary_identifiers":["GO:0046650"],"synonyms":[{"name":"lymphocyte cell differentiation","type":"exact"},{"name":"lymphocyte development","type":"related"},{"name":"lymphocytic blood cell differentiation","type":"exact"}],"termid":"GO:0030098"}


id: PBO:0068049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 354","termid":"PBO:0068049"}


id: GO:0010372
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of gibberellins.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gibberellin biosynthetic process","termid":"GO:0010371"},{"relation_name":"is_a","term_name":"positive regulation of cellular biosynthetic process","termid":"GO:0031328"},{"relation_name":"is_a","term_name":"positive regulation of isoprenoid metabolic process","termid":"GO:0045828"},{"relation_name":"is_a","term_name":"positive regulation of lipid biosynthetic process","termid":"GO:0046889"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"positively_regulates","term_name":"gibberellin biosynthetic process","termid":"GO:0009686"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0019748","GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"positive regulation of gibberellin biosynthetic process","synonyms":[{"name":"positive regulation of gibberellic acid biosynthetic process","type":"narrow"}],"termid":"GO:0010372"}


id: PBO:0070995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L19 pseudogene 19","termid":"PBO:0070995"}


id: PBO:0016954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleotide exchange factor for the ER lumenal Hsp70 chaperone, Sil1 (predicted)","termid":"PBO:0016954"}


id: GO:0032678
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of interleukin-9 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"interleukin-9 production","termid":"GO:0032638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of interleukin-9 production","secondary_identifiers":["GO:0045417"],"synonyms":[{"name":"regulation of IL-9 production","type":"exact"},{"name":"regulation of interleukin-9 biosynthetic process","type":"narrow"}],"termid":"GO:0032678"}


id: GO:0070822
data:
  {"annotated_genes":["SJAG_01804","SJAG_03255","SJAG_04576","SJAG_03230","SJAG_02439","SJAG_03884","SJAG_00581","SJAG_00349","SJAG_00868","SJAG_03441","SJAG_00441","SJAG_02846","SJAG_01230","SJAG_04758","SJAG_02981","SJAG_03867","SJAG_01110"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[77885,102764,110248,105484,85209,91512,101051,98824,90710,74724,99897,100749,106492],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033698"},{"annotations":[91949,91514,85895,89846,90374,105486],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032221"}]},"cv_name":"cellular_component","definition":"Any of a number of evolutionarily conserved histone deacetylase complexes (HDACs) containing a core consisting of a paired amphipathic helix motif protein (e.g. Sin3p in S. cerevisiae, Pst1 in S. pombe or Sin3A in mammals) at least one class I histone deacetylase (e.g. Rpd3p in S. cerevisiae, Clr6 in S. pombe, or HDAC1 and HDAC2 in mammals), and at least one WD40 repeat protein (e.g. Ume1p in S. cerevisiae, Prw1 in S. pombe, or RbAp46 and RbAp48 in mammals). These complexes also contain a variable number of other proteins that direct histone binding, DNA binding, or add other functionality to the complex.","definition_xrefs":["PMID:15565322","PMID:18292778"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone deacetylase complex","termid":"GO:0000118"},{"relation_name":"part_of","term_name":"nuclear chromosome","termid":"GO:0000228"},{"relation_name":"part_of","term_name":"chromatin","termid":"GO:0000785"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00349":null,"SJAG_00441":null,"SJAG_00581":null,"SJAG_00868":null,"SJAG_01110":null,"SJAG_01230":null,"SJAG_01804":null,"SJAG_02439":null,"SJAG_02846":null,"SJAG_02981":null,"SJAG_03230":null,"SJAG_03255":null,"SJAG_03441":null,"SJAG_03867":null,"SJAG_03884":null,"SJAG_04576":null,"SJAG_04758":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005654","GO:0005694","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"Sin3-type complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0070822","terms_by_termid":{"GO:0032221":null,"GO:0033698":null}}


id: GO:0000334
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-hydroxyanthranilate + O2 = cis,cis-2-amino-3-(3-oxoprop-1-enyl)but-2-enedioate + H+.","definition_xrefs":["EC:1.13.11.6","RHEA:17953"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"3-hydroxyanthranilate 3,4-dioxygenase activity","secondary_identifiers":["MetaCyc:1.13.11.6-RXN","KEGG_REACTION:R02665","Reactome:R-HSA-71218","UM-BBD_reactionID:r1027"],"synonyms":[{"name":"3-hydroxyanthranilate oxygenase activity","type":"related"},{"name":"3-hydroxyanthranilate:oxygen 3,4-oxidoreductase (decyclizing)","type":"related"},{"name":"3-hydroxyanthranilic acid dioxygenase activity","type":"related"},{"name":"3-hydroxyanthranilic acid oxygenase activity","type":"related"},{"name":"3-hydroxyanthranilic oxygenase activity","type":"related"},{"name":"3HAO","type":"related"}],"termid":"GO:0000334"}


id: PBO:0069770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1053, pseudogene","termid":"PBO:0069770"}


id: SO:1000141
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosome that occurred by the division of a larger chromosome.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intrachromosomal_mutation","termid":"SO:1000028"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome_fission","synonyms":[{"name":"chromosome fission","type":"exact"}],"termid":"SO:1000141"}


id: PBO:0067498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 634, pseudogene","termid":"PBO:0067498"}


id: PBO:0091919
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pombe Frataxin Homolog","termid":"PBO:0091919"}


id: PBO:0057343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 527","termid":"PBO:0057343"}


id: GO:0003198
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will contribute to the formation of the endocardial cushion.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac epithelial to mesenchymal transition","termid":"GO:0060317"},{"relation_name":"part_of","term_name":"endocardial cushion formation","termid":"GO:0003272"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial to mesenchymal transition involved in endocardial cushion formation","termid":"GO:0003198"}


id: PBO:0039873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 30","termid":"PBO:0039873"}


id: MOD:00191
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts L-tyrosine to (Z)-2,3-didehydrotyrosine.","definition_xrefs":["PubMed:1347277","PubMed:9631087","RESID:AA0183"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dehydrogenated tyrosine","termid":"MOD:00706"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(Z)-2,3-didehydrotyrosine","synonyms":[{"name":"(2Z)-2-amino-3-(4-hydroxyphenyl)prop-2-enoic acid","type":"exact"},{"name":"(Z)-2,3-didehydrogenated tyrosine","type":"exact"},{"name":"(Z)-2,3-didehydrotyrosine","type":"exact"},{"name":"2-amino-3-oxo-butanoic_acid","type":"related"},{"name":"Didehydro","type":"related"},{"name":"MOD_RES (Z)-2,3-didehydrotyrosine","type":"exact"},{"name":"Z-dHTyr","type":"exact"},{"name":"amino-(para-hydroxybenzylidenyl)acetic acid","type":"exact"},{"name":"cis-dehydrotyrosine","type":"exact"},{"name":"green fluorescent protein chromophore","type":"exact"},{"name":"para-hydroxybenzylidene-imidazolidinone chromophore","type":"exact"},{"name":"red fluorescent protein chromophore","type":"exact"}],"termid":"MOD:00191"}


id: PBO:0039269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALDOA pseudogene 2","termid":"PBO:0039269"}


id: PBO:0028217
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-septation_following_abnormal_chromosome_segregation,_with_binucleate_and_anucleate_compartment_formation_during_cellular_response_to_salt_stress","termid":"PBO:0028217"}


id: PBO:0034744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hrd1 ubiquitin ligase complx UBX domain protein Ubx2","termid":"PBO:0034744"}


id: GO:0004146
data:
  {"annotated_genes":["SJAG_01198"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110079],"is_not":false,"summary":null,"term":"GO:0004146"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 5,6,7,8-tetrahydrofolate + NADP+ = 7,8-dihydrofolate + NADPH + H+.","definition_xrefs":["EC:1.5.1.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor","termid":"GO:0016646"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01198":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"dihydrofolate reductase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-1497794","RHEA:15009","MetaCyc:DIHYDROFOLATEREDUCT-RXN"],"synonyms":[{"name":"5,6,7,8-tetrahydrofolate:NADP+ oxidoreductase activity","type":"related"},{"name":"7,8-dihydrofolate reductase activity","type":"related"},{"name":"DHFR","type":"related"},{"name":"NADPH-dihydrofolate reductase activity","type":"related"},{"name":"dihydrofolate reductase:thymidylate synthase activity","type":"related"},{"name":"dihydrofolate reduction","type":"exact"},{"name":"dihydrofolic acid reductase activity","type":"related"},{"name":"dihydrofolic reductase activity","type":"related"},{"name":"folic acid reductase activity","type":"related"},{"name":"folic reductase activity","type":"related"},{"name":"pteridine reductase:dihydrofolate reductase activity","type":"related"},{"name":"tetrahydrofolate dehydrogenase activity","type":"related"},{"name":"thymidylate synthetase-dihydrofolate reductase activity","type":"related"}],"termid":"GO:0004146","terms_by_termid":{"GO:0004146":null}}


id: PBO:0061796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ornithine decarboxylase 1","termid":"PBO:0061796"}


id: FYPO:0003209
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell tip is abolished, and the protein is present in the cytoplasm instead.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to cell tip during vegetative growth","termid":"FYPO:0001585"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to cell tip, with protein mislocalized to cytoplasm","synonyms":[{"name":"abolished protein localisation to cell tip, with protein mislocalised to cytoplasm","type":"exact"},{"name":"abolished protein localization to cell end, with protein mislocalized to cytoplasm","type":"exact"},{"name":"abolished protein localization to cell tip, with protein mislocalized to cytoplasm during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to cell tip, with protein mislocalized to cytoplasm, during vegetative growth","type":"exact"},{"name":"protein localization to cell tip abolished, with protein mislocalized to cytoplasm","type":"exact"}],"termid":"FYPO:0003209"}


id: FYPO:0006843
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of histone H3 to chromatin is increased.","definition_xrefs":["PMID:28904333","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to chromatin during vegetative growth","termid":"FYPO:0003011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"increased histone H3 localization to chromatin","synonyms":[{"name":"increased histone H3 localisation to chromatin","type":"exact"},{"name":"increased histone H3 localization to chromatin during mitotic cell cycle","type":"related"},{"name":"increased histone H3 localization to chromatin during vegetative growth","type":"exact"}],"termid":"FYPO:0006843"}


id: GO:0061551
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a trigeminal ganglion over time, from its formation to the mature structure.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial ganglion development","termid":"GO:0061550"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"trigeminal ganglion development","synonyms":[{"name":"trigeminal ganglia development","type":"related"}],"termid":"GO:0061551"}


id: GO:0016094
data:
  {"annotated_genes":["SJAG_00554","SJAG_02163","SJAG_04954"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104037,93845,96057],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019408"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of polyprenols, prenols with more than 4 isoprenoid residues, which may be all-trans, or a mixture of cis and trans.","definition_xrefs":["GOC:go_curators","PMID:11108713"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprenoid biosynthetic process","termid":"GO:0008299"},{"relation_name":"is_a","term_name":"polyprenol metabolic process","termid":"GO:0016093"},{"relation_name":"is_a","term_name":"alcohol biosynthetic process","termid":"GO:0046165"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00554":null,"SJAG_02163":null,"SJAG_04954":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"polyprenol biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"polyprenol anabolism","type":"exact"},{"name":"polyprenol biosynthesis","type":"exact"},{"name":"polyprenol formation","type":"exact"},{"name":"polyprenol synthesis","type":"exact"}],"termid":"GO:0016094","terms_by_termid":{"GO:0019408":null}}


id: PBO:0054659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2065","termid":"PBO:0054659"}


id: GO:0016797
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end to yield 3' phosphomonoesters.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exonuclease activity","termid":"GO:0004527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0004527"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0004527","GO:0016788","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters","secondary_identifiers":["EC:3.1.16.-"],"termid":"GO:0016797"}


id: GO:0048744
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of skeletal muscle fiber development. Muscle fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast.","definition_xrefs":["GOC:dph","GOC:jid","GOC:lm","GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell development","termid":"GO:0010721"},{"relation_name":"is_a","term_name":"regulation of skeletal muscle fiber development","termid":"GO:0048742"},{"relation_name":"is_a","term_name":"negative regulation of striated muscle cell differentiation","termid":"GO:0051154"},{"relation_name":"negatively_regulates","term_name":"skeletal muscle fiber development","termid":"GO:0048741"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of skeletal muscle fiber development","synonyms":[{"name":"down regulation of skeletal muscle fiber development","type":"exact"},{"name":"down-regulation of skeletal muscle fiber development","type":"exact"},{"name":"downregulation of skeletal muscle fiber development","type":"exact"},{"name":"inhibition of skeletal muscle fiber development","type":"narrow"},{"name":"negative regulation of skeletal muscle fibre development","type":"exact"},{"name":"negative regulation of skeletal myofiber development","type":"exact"},{"name":"negative regulation of skeletal myofibre development","type":"exact"}],"termid":"GO:0048744"}


id: GO:0141059
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a symbiont interferes with a host antimicrobial peptide, for example by cleavage or degradation.","definition_xrefs":["PMID:21335044","PMID:16242332","PMID:19015361"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host defenses","termid":"GO:0044414"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated disruption of host antimicrobial peptide activity","synonyms":[{"name":"disruption of host antimicrobial peptide activity","type":"exact"}],"termid":"GO:0141059"}


id: PBO:0078351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (CTC) 17-1","termid":"PBO:0078351"}


id: GO:0045299
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The precipitation of specific crystal forms of calcium carbonate with extracellular matrix proteins in the otolith organs of the vertebrate inner ear.","definition_xrefs":["GOC:dsf","PMID:15581873"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biomineral tissue development","termid":"GO:0031214"},{"relation_name":"part_of","term_name":"otolith development","termid":"GO:0048840"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"otolith mineralization","termid":"GO:0045299"}


id: FYPO:0002163
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the fungal-type cell wall is thinner than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell wall thickness during vegetative growth","termid":"FYPO:0006745"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002946"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0002946","FYPO:0001985"],"is_obsolete":false,"name":"decreased cell wall thickness during vegetative growth","synonyms":[{"name":"decreased cell wall thickness during mitotic cell cycle","type":"related"},{"name":"reduced cell wall thickness during vegetative growth","type":"exact"},{"name":"thin cell wall during vegetative growth","type":"exact"}],"termid":"FYPO:0002163"}


id: GO:0042564
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A dimer consisting of an alpha and a beta-subunit that imports proteins with an NLS into the nucleus through a nuclear pore.","definition_xrefs":["PMID:9323123","Wikipedia:Importin","GOC:jl","PMID:9323134"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleocytoplasmic transport complex","termid":"GO:0031074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"NLS-dependent protein nuclear import complex","termid":"GO:0042564"}


id: GO:0038172
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by interleukin-33 binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:signaling","GOC:jc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"interleukin-33-mediated signaling pathway","synonyms":[{"name":"IL-33-mediated signaling pathway","type":"exact"},{"name":"IL33 signaling pathway","type":"exact"},{"name":"interleukin-33 signaling pathway","type":"related"},{"name":"interleukin-33-mediated signalling pathway","type":"exact"}],"termid":"GO:0038172"}


id: MOD:01569
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a threonine residue with the Applied Biosystems iTRAQ8plex-118 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iTRAQ8plex-118 reporter+balance reagent acylated residue","termid":"MOD:01563"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent O-acylated residue","termid":"MOD:01714"},{"relation_name":"is_a","term_name":"O3-acylated L-threonine","termid":"MOD:02004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ8plex-118 reporter+balance reagent O3-acylated threonine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"}],"termid":"MOD:01569"}


id: MOD:00965
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an N-terminal L-cysteine residue by a formadehyde adduct to 4-thiazolidinecarboxylic acid.","definition_xrefs":["DeltaMass:342"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-thiazolidinecarboxylic acid","synonyms":[{"name":"thioproline","type":"exact"}],"termid":"MOD:00965"}


id: GO:0001057
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase IV specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.","definition_xrefs":["GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-directed 5'-3' RNA polymerase activity","termid":"GO:0003899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0140098","GO:0016779","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"RNA polymerase IV activity","synonyms":[{"name":"DNA-directed RNA polymerase activity involved in transcription from RNA polymerase IV promoter","type":"exact"}],"termid":"GO:0001057"}


id: GO:0090371
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of the directed movement of glycerol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:jh","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transmembrane transport","termid":"GO:0034762"},{"relation_name":"regulates","term_name":"glycerol transmembrane transport","termid":"GO:0015793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"regulation of glycerol transport","termid":"GO:0090371"}


id: PBO:0060843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurofilament medium chain","termid":"PBO:0060843"}


id: PBO:0029423
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_palmitoylation_during_vegetative_growth","termid":"PBO:0029423"}


id: GO:0032232
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the assembly of actin filament bundles.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of actin filament bundle assembly","termid":"GO:0032231"},{"relation_name":"is_a","term_name":"negative regulation of cytoskeleton organization","termid":"GO:0051494"},{"relation_name":"is_a","term_name":"negative regulation of supramolecular fiber organization","termid":"GO:1902904"},{"relation_name":"negatively_regulates","term_name":"actin filament bundle assembly","termid":"GO:0051017"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0030036"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"negatively_regulates","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007010","GO:0030036","GO:0044085"],"is_obsolete":false,"name":"negative regulation of actin filament bundle assembly","synonyms":[{"name":"down regulation of actin filament bundle formation","type":"exact"},{"name":"down-regulation of actin filament bundle formation","type":"exact"},{"name":"downregulation of actin filament bundle formation","type":"exact"},{"name":"inhibition of actin filament bundle formation","type":"narrow"}],"termid":"GO:0032232"}


id: GO:0070102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by interleukin-6 binding to a receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:BHF","GOC:signaling","GOC:add","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"},{"relation_name":"part_of","term_name":"cellular response to interleukin-6","termid":"GO:0071354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"interleukin-6-mediated signaling pathway","synonyms":[{"name":"IL-6-mediated signaling pathway","type":"related"},{"name":"interleukin-6-mediated signalling pathway","type":"exact"}],"termid":"GO:0070102"}


id: PBO:0057715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1302-1","termid":"PBO:0057715"}


id: GO:0005217
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of an ion by a channel that opens when a specific intracellular ligand has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligand-gated monoatomic ion channel activity","termid":"GO:0015276"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"intracellularly ligand-gated monoatomic ion channel activity","synonyms":[{"name":"intracellular ligand-gated ion channel activity","type":"broad"},{"name":"intracellular ligand-gated monoatomic ion channel activity","type":"exact"}],"termid":"GO:0005217"}


id: GO:0031087
data:
  {"annotated_genes":["SJAG_04640","SJAG_03023","SJAG_02370"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88619,101606],"is_not":false,"summary":null,"term":"GO:0031087"},{"annotations":[87743],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036450"}]},"cv_name":"biological_process","definition":"Cleavage of the 5'-cap of a nuclear-transcribed mRNA that is independent of poly(A) tail shortening.","definition_xrefs":["GOC:krc","PMID:15225544","PMID:15225542"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA methylguanosine-cap decapping","termid":"GO:0110156"},{"relation_name":"part_of","term_name":"nuclear-transcribed mRNA catabolic process, deadenylation-independent decay","termid":"GO:0031086"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02370":null,"SJAG_03023":null,"SJAG_04640":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016071","GO:0008150"],"is_obsolete":false,"name":"deadenylation-independent decapping of nuclear-transcribed mRNA","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"deadenylation-independent decapping of nuclear mRNA","type":"related"},{"name":"deadenylylation-independent decapping","type":"exact"}],"termid":"GO:0031087","terms_by_termid":{"GO:0031087":null,"GO:0036450":null}}


id: PR:G2TRU6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC188.14 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRU6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C188.14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC188.14","synonyms":[{"name":"Spom972h-SPCC188.14","type":"exact"}],"termid":"PR:G2TRU6"}


id: PBO:0084399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lumazine synthase (DMRL synthase); catalyzes synthesis of immediate precursor to riboflavin; DMRL synthase stands for 6,7-dimethyl-8-ribityllumazine synthase","termid":"PBO:0084399"}


id: PBO:0072093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S12 pseudogene 24","termid":"PBO:0072093"}


id: GO:0047635
data:
  {"annotated_genes":["SJAG_04145"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[107255],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004021"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-alanine + a 2-oxo acid = pyruvate + an L-amino acid.","definition_xrefs":["EC:2.6.1.12","MetaCyc:ALANINE--OXO-ACID-AMINOTRANSFERASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04145":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016769","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"alanine-oxo-acid transaminase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:19953"],"synonyms":[{"name":"L-alanine-alpha-keto acid aminotransferase activity","type":"related"},{"name":"L-alanine:2-oxo-acid aminotransferase activity","type":"related"},{"name":"alanine--oxo-acid aminotransferase activity","type":"related"},{"name":"alanine-keto acid aminotransferase activity","type":"related"},{"name":"alanine-oxo acid aminotransferase activity","type":"related"},{"name":"alanine-oxo-acid aminotransferase activity","type":"exact"},{"name":"leucine-alanine transaminase activity","type":"related"}],"termid":"GO:0047635","terms_by_termid":{"GO:0004021":null}}


id: PBO:0091419
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human ELOVL7","termid":"PBO:0091419"}


id: GO:0008949
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + oxalyl-CoA = CO2 + formyl-CoA.","definition_xrefs":["EC:4.1.1.8","RHEA:19333"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"oxalyl-CoA decarboxylase activity","secondary_identifiers":["MetaCyc:OXALYL-COA-DECARBOXYLASE-RXN","KEGG_REACTION:R01908"],"synonyms":[{"name":"oxalyl coenzyme A decarboxylase activity","type":"related"},{"name":"oxalyl-CoA carboxy-lyase (formyl-CoA-forming)","type":"related"},{"name":"oxalyl-CoA carboxy-lyase activity","type":"related"}],"termid":"GO:0008949"}


id: PBO:0091983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hsp70 family heat shock protein Ssa2","termid":"PBO:0091983"}


id: MOD:01995
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tryptophan residue to N2-formyl-L-tryptophan.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-formyl-L-tryptophan","termid":"MOD:01106"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N2-formyl-L-tryptophan","synonyms":[{"name":"N2FoTrp","type":"exact"}],"termid":"MOD:01995"}


id: PBO:0086789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; predicted to be palmitoylated","termid":"PBO:0086789"}


id: PR:O36014
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An aspartyl aminopeptidase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR10761:SF2","OMA:SCHPO02005"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aspartyl aminopeptidase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4F10.02","secondary_identifiers":["UniProtKB:O36014"],"synonyms":[{"name":"Spom972h-DNPEP","type":"exact"}],"termid":"PR:O36014"}


id: PBO:0042062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 125","termid":"PBO:0042062"}


id: PATO:0001156
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001156 relative concentration (obsolete PATO:0001156)","termid":"PATO:0001156"}


id: PR:O43006
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug178 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O43006"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 178 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2G2.07c","synonyms":[{"name":"Spom972h-mug178","type":"exact"}],"termid":"PR:O43006"}


id: GO:0070167
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of biomineral tissue development, the formation of hard tissues that consist mainly of inorganic compounds.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of multicellular organismal development","termid":"GO:2000026"},{"relation_name":"regulates","term_name":"biomineral tissue development","termid":"GO:0031214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of biomineral tissue development","termid":"GO:0070167"}


id: GO:0097196
data:
  {"annotated_genes":["SJAG_02181","SJAG_03051"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[86891,98381],"is_not":false,"summary":null,"term":"GO:0097196"}]},"cv_name":"cellular_component","definition":"A protein complex involved in error-free DNA post-replication repair (PRR). In Saccharomyces cerevisiae the complex contains Csm2p, Psy3p, Shu1p, and Shu2p.","definition_xrefs":["PMID:19496932","PMID:15654096","GOC:jh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02181":null,"SJAG_03051":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"Shu complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0097196","terms_by_termid":{"GO:0097196":null}}


id: PBO:0000688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein Seb1","termid":"PBO:0000688"}


id: MOD:01528
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a residue with the Applied Biosystems iTRAQ8plex-113 reporter+balance group.","definition_xrefs":["Unimod:730"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(13)C isotope tagged reagent","termid":"MOD:01428"},{"relation_name":"is_a","term_name":"(15)N isotope tagged reagent","termid":"MOD:01429"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent acylated residue","termid":"MOD:01526"},{"relation_name":"is_a","term_name":"modifications with monoisotopic mass differences that are nominally equal at 304.205359 Da","termid":"MOD:01591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ8plex-113 reporter+balance reagent acylated residue","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"Representative mass and accurate mass for 113, 114, 116 & 117","type":"related"},{"name":"iTRAQ8plex","type":"related"},{"name":"iTRAQ8plex:13C(7)15N(1)","type":"related"}],"termid":"MOD:01528"}


id: GO:0015369
data:
  {"annotated_genes":["SJAG_04096","SJAG_04028","SJAG_04698"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86792,87280,94391,111567],"is_not":false,"summary":null,"term":"GO:0015369"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + H+(out) = Ca2+(out) + H+(in).","definition_xrefs":["RHEA:71799","TC:2.A.19.2.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium:monoatomic cation antiporter activity","termid":"GO:0015368"},{"relation_name":"is_a","term_name":"metal cation:proton antiporter activity","termid":"GO:0051139"}],"gene_count":3,"genes_by_uniquename":{"SJAG_04028":null,"SJAG_04096":null,"SJAG_04698":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"calcium:proton antiporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-8949687"],"synonyms":[{"name":"calcium:hydrogen antiporter activity","type":"exact"}],"termid":"GO:0015369","terms_by_termid":{"GO:0015369":null}}


id: PBO:0062514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily J member 3","termid":"PBO:0062514"}


id: PBO:0002045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L7","termid":"PBO:0002045"}


id: GO:0048870
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another.","definition_xrefs":["GOC:mlg","GOC:dgh","GOC:isa_complete","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process","termid":"GO:0009987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell motility","synonyms":[{"name":"cell locomotion","type":"exact"},{"name":"cell movement","type":"related"},{"name":"movement of a cell","type":"exact"}],"termid":"GO:0048870"}


id: GO:1903093
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein K48-linked deubiquitination.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:bf","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein deubiquitination","termid":"GO:0090085"},{"relation_name":"regulates","term_name":"protein K48-linked deubiquitination","termid":"GO:0071108"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0008150","GO:0070647"],"is_obsolete":false,"name":"regulation of protein K48-linked deubiquitination","termid":"GO:1903093"}


id: PBO:0027508
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_prospore_membrane","termid":"PBO:0027508"}


id: PBO:0081465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 335","termid":"PBO:0081465"}


id: PBO:0110350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CMPK1 pseudogene 2","termid":"PBO:0110350"}


id: PBO:0036453
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Microvillus inclusion disease","termid":"PBO:0036453"}


id: PBO:0043688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 4I1 pseudogene 1","termid":"PBO:0043688"}


id: GO:0002069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process, independent of morphogenetic (shape) change, that is required for a columna/cuboidal epithelial cell to attain its fully functional state. A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell maturation","termid":"GO:0002070"},{"relation_name":"part_of","term_name":"columnar/cuboidal epithelial cell development","termid":"GO:0002066"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"columnar/cuboidal epithelial cell maturation","termid":"GO:0002069"}


id: PBO:0058368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4740","termid":"PBO:0058368"}


id: PBO:0087007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Riboflavin synthase; catalyzes the last step of the riboflavin biosynthesis pathway","termid":"PBO:0087007"}


id: PBO:0081826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 749","termid":"PBO:0081826"}


id: PBO:0028018
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_CAAX-protein_geranylgeranyltransferase_activity","termid":"PBO:0028018"}


id: PBO:0062333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily C member 72 pseudogene","termid":"PBO:0062333"}


id: FYPO:0004278
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of uracil DNA N-glycosylase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal uracil DNA N-glycosylase activity","termid":"FYPO:0004277"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000661","FYPO:0000707","FYPO:0000654","FYPO:0001985"],"is_obsolete":false,"name":"decreased uracil DNA N-glycosylase activity","synonyms":[{"name":"reduced uracil DNA N-glycosylase activity","type":"exact"}],"termid":"FYPO:0004278"}


id: PBO:0056902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"macrophage migration inhibitory factor","termid":"PBO:0056902"}


id: PBO:0072402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S27 pseudogene 7","termid":"PBO:0072402"}


id: GO:0021693
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the cerebellar Purkinje cell layer. This process pertains to the physical shaping of a rudimentary structure. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells.","definition_xrefs":["GO_REF:0000021","GOC:dgh","GOC:jid","GOC:cls","GOC:dph","ISBN:0838580343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure arrangement","termid":"GO:0048532"},{"relation_name":"part_of","term_name":"cerebellar Purkinje cell layer morphogenesis","termid":"GO:0021692"},{"relation_name":"part_of","term_name":"cerebellar cortex structural organization","termid":"GO:0021698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellar Purkinje cell layer structural organization","synonyms":[{"name":"cerebellar Purkinje cell layer structural organisation","type":"exact"}],"termid":"GO:0021693"}


id: GO:0052474
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of the T-cell mediated immune response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation by organism of symbiont T-cell mediated immune response (obsolete GO:0052474)","synonyms":[{"name":"negative regulation by organism of symbiont T-cell mediated immune response","type":"exact"}],"termid":"GO:0052474"}


id: PBO:0001012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP-GlcNAc transferase associated protein Alg14 (predicted)","termid":"PBO:0001012"}


id: GO:0034892
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: endosulfan lactone + H2O = endosulfan hydroxycarboxylate + H+.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete endosulfan lactone lactonase activity (obsolete GO:0034892)","termid":"GO:0034892"}


id: GO:0005186
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The activity of binding to and activating specific cell surface receptors, thereby inducing behavioral, developmental, or physiological response(s) from a responding organism or cell. The substance may be released or retained on the cell surface. Pheromones may serve as a specific attractant, social communicator, or sexual stimulant.","definition_xrefs":["GOC:sgd_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor ligand activity","termid":"GO:0048018"}],"gene_count":0,"genotype_count":0,"in_subsets":["mf_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0140677"}],"interesting_parent_ids":["GO:0098772","GO:0003674","GO:0005515","GO:0005488","GO:0140677"],"is_obsolete":false,"name":"pheromone activity","termid":"GO:0005186"}


id: PR:O43030
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fes1 gene.","definition_xrefs":["UniProtKB:O43030","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hsp70 nucleotide exchange factor fes1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3B9.01","synonyms":[{"name":"Spom972h-fes1","type":"exact"}],"termid":"PR:O43030"}


id: FYPO:0005987
data:
  {"alleles_by_uniquename":{"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_04280:allele-2":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-2"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115152],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0005503"}],"single_locus_phenotype":[{"annotations":[115349,115347,115146,115346],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0005503"},{"annotations":[115348],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002870"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the cell tip is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization","termid":"FYPO:0001370"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00030":null,"SJAG_01143":null,"SJAG_01794":null,"SJAG_02392":null,"SJAG_03581":null,"SJAG_03596":null,"SJAG_04280":null,"SJAG_04522":null},"genotype_count":3,"genotypes_by_uniquename":{"mid1delta__pom1delta":{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"wee1-as8(T582G aa)","display_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_02392","SJAG_01143"],"name":"abnormal protein localization to cell tip","references_by_uniquename":{"PMID:25866389":null,"PMID:30664646":null},"single_locus_annotated_genes":["SJAG_02392","SJAG_04280"],"single_locus_genotype_uniquenames":["pom1delta","wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal protein localisation to cell tip","type":"exact"},{"name":"abnormal protein localization to cell end","type":"exact"}],"termid":"FYPO:0005987","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000338":null,"FYPO:0002870":null,"FYPO:0005503":null}}


id: PBO:0053871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1147","termid":"PBO:0053871"}


id: GO:0003976
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + lysosomal-enzyme D-mannose = UMP + lysosomal-enzyme N-acetyl-D-glucosaminyl-phospho-D-mannose.","definition_xrefs":["EC:2.7.8.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016780"}],"interesting_parent_ids":["GO:0016780","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity","secondary_identifiers":["RHEA:13581","MetaCyc:2.7.8.17-RXN"],"synonyms":[{"name":"N-acetylglucosaminyl phosphotransferase activity","type":"related"},{"name":"N-acetylglucosaminylphosphotransferase activity","type":"related"},{"name":"UDP-GlcNAc:glycoprotein N-acetylglucosamine-1-phosphotransferase activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:lysosomal-enzyme N-acetylglucosaminephosphotransferase activity","type":"related"},{"name":"UDP-N-acetylglucosamine:glycoprotein N-acetylglucosamine-1-phosphotransferase activity","type":"related"},{"name":"UDP-N-acetylglucosamine:glycoprotein N-acetylglucosaminyl-1-phosphotransferase activity","type":"related"},{"name":"UDP-N-acetylglucosamine:lysosomal enzyme N-acetylglucosamine-1-phosphotransferase activity","type":"related"},{"name":"lysosomal enzyme precursor acetylglucosamine-1-phosphotransferase activity","type":"related"}],"termid":"GO:0003976"}


id: PBO:0086193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein similar to the human peptidyl-tRNA hydrolase gene ICT1; associates with mitochondrial large subunit; may function in translation termination; YOL114C is not an essential gene","termid":"PBO:0086193"}


id: PBO:0047492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fem-1 homolog A","termid":"PBO:0047492"}


id: PBO:0051919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrin subunit beta 3","termid":"PBO:0051919"}


id: PBO:0038534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abhydrolase domain containing 10, depalmitoylase","termid":"PBO:0038534"}


id: PBO:0108572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rix1 complex armadillo-type fold Rix1","termid":"PBO:0108572"}


id: PBO:0060806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase core subunit V1","termid":"PBO:0060806"}


id: PBO:0053834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1099","termid":"PBO:0053834"}


id: PBO:0070377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"roundabout guidance receptor 3","termid":"PBO:0070377"}


id: PBO:0040298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase plasma membrane Ca2+ transporting 2","termid":"PBO:0040298"}


id: PBO:0043778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxypeptidase A4","termid":"PBO:0043778"}


id: PR:O14094
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein prune that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01640","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exopolyphosphatase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2F3.11","secondary_identifiers":["UniProtKB:O14094"],"synonyms":[{"name":"ExopolyPase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Metaphosphatase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PRUNE","type":"exact"}],"termid":"PR:O14094"}


id: PBO:0029529
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_alpha-glucanase","termid":"PBO:0029529"}


id: PBO:0073209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"semaphorin 4A","termid":"PBO:0073209"}


id: PBO:0064274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology and RhoGEF domain containing G7","termid":"PBO:0064274"}


id: PBO:0084623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Methionine-S-sulfoxide reductase; involved in the response to oxidative stress; protects iron-sulfur clusters from oxidative inactivation along with MXR2; involved in the regulation of lifespan; reduced activity of human homolog implicated in Alzheimer disease","termid":"PBO:0084623"}


id: PBO:0040894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bone morphogenetic protein receptor type 1B","termid":"PBO:0040894"}


id: SO:0000313
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A double-helical region of nucleic acid formed by base-pairing between adjacent (inverted) complementary sequences.","direct_ancestors":[{"relation_name":"is_a","term_name":"RNA_sequence_secondary_structure","termid":"SO:0000122"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stem_loop","secondary_identifiers":["SO:0000019","http://en.wikipedia.org/wiki/Stem_loop"],"synonyms":[{"name":"INSDC_feature:stem_loop","type":"exact"},{"name":"RNA_hairpin_loop","type":"exact"},{"name":"stem loop","type":"exact"},{"name":"stem-loop","type":"exact"}],"termid":"SO:0000313"}


id: PBO:0080206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VGF nerve growth factor inducible","termid":"PBO:0080206"}


id: GO:0021886
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a neuron located in the hypothalamus. These neurons release gonadotrophin-releasing hormone as a neural transmitter.","definition_xrefs":["GO_REF:0000021","GOC:dph","GOC:cls","GOC:dgh","GOC:jid","PMID:12626695"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypothalamus cell differentiation","termid":"GO:0021979"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hypothalamus gonadotrophin-releasing hormone neuron differentiation","synonyms":[{"name":"hypothalamus gonadotropin-releasing hormone neuron differentiation","type":"exact"}],"termid":"GO:0021886"}


id: PBO:0085561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein containing GATA family zinc finger motifs; similar to Gln3p and Dal80p; expression repressed by leucine","termid":"PBO:0085561"}


id: GO:0140717
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Entry of a symbiont into host plant tissue via the stromata, microscopic pores in the epidermis of the aerial parts of terrestrial plants. These pores are essential for photosynthesis, as they allow CO2 to diffuse into the plant. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:17419713","PMID:29307013","PMID:16959560"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont entry into host","termid":"GO:0044409"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"entry into host through the stromata","termid":"GO:0140717"}


id: GO:0042450
data:
  {"annotated_genes":["SJAG_00636","SJAG_00635","SJAG_00412","SJAG_04577","SJAG_00695","SJAG_01592","SJAG_01461","SJAG_01019","SJAG_00392"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94225,94233,98667,99496,102536,106486,107098,107928,114372],"is_not":false,"summary":null,"term":"GO:0042450"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of arginine (2-amino-5-guanidinopentanoic acid) via the intermediate compound ornithine.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arginine biosynthetic process","termid":"GO:0006526"},{"relation_name":"is_a","term_name":"ornithine metabolic process","termid":"GO:0006591"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00392":null,"SJAG_00412":null,"SJAG_00635":null,"SJAG_00636":null,"SJAG_00695":null,"SJAG_01019":null,"SJAG_01461":null,"SJAG_01592":null,"SJAG_04577":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"arginine biosynthetic process via ornithine","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"arginine anabolism via ornithine","type":"exact"},{"name":"arginine formation via ornithine","type":"exact"},{"name":"arginine synthesis via ornithine","type":"exact"}],"termid":"GO:0042450","terms_by_termid":{"GO:0042450":null}}


id: PR:O14041
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC2C4.08 gene.","definition_xrefs":["UniProtKB:O14041","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized nucleolar protein C2C4.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2C4.08","synonyms":[{"name":"Spom972h-SPAC2C4.08","type":"exact"}],"termid":"PR:O14041"}


id: MOD:01099
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-aspartic acid residue to succinyl beta-aspartyl anhydride.","definition_xrefs":["DeltaMass:244"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-aspartic acid residue","termid":"MOD:00904"},{"relation_name":"is_a","term_name":"succinylated residue","termid":"MOD:01029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"succinyl beta-aspartyl anhydride","synonyms":[{"name":"succinyl aspartamyl","type":"exact"}],"termid":"MOD:01099"}


id: GO:0051704
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A biological process which involves another organism of the same or different species.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete multi-organism process (obsolete GO:0051704)","synonyms":[{"name":"interaction between organisms","type":"exact"},{"name":"physiological interaction between organisms","type":"exact"},{"name":"physiological interaction with other organism","type":"exact"}],"termid":"GO:0051704"}


id: PBO:0081692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 614","termid":"PBO:0081692"}


id: FYPO:0009089
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of higher concentrations of sodium chloride and sodium dodecyl sulfate than normal.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0002682","FYPO:0000003"],"is_obsolete":false,"name":"resistance to sodium chloride and sodium dodecyl sulfate","synonyms":[{"name":"resistance to sodium chloride and SDS","type":"exact"},{"name":"resistance to sodium chloride and SDS during vegetative growth","type":"exact"},{"name":"resistance to sodium chloride and SDS in combination","type":"exact"},{"name":"resistance to sodium chloride and sodium dodecyl sulfate during mitotic cell cycle","type":"related"},{"name":"resistance to sodium chloride and sodium dodecyl sulfate during vegetative growth","type":"exact"},{"name":"resistance to sodium chloride and sodium dodecyl sulfate in combination","type":"exact"},{"name":"resistant to sodium chloride and SDS","type":"exact"},{"name":"resistant to sodium chloride and sodium dodecyl sulfate","type":"exact"}],"termid":"FYPO:0009089"}


id: GO:0160189
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An organelle membrane contact site between peroxisomal membrane and mitochondrial outer membrane.","definition_xrefs":["PMID:29684109","PMID:38669296"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle membrane contact site","termid":"GO:0044232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"peroxisomal-mitochondrial contact site","synonyms":[{"name":"PerMit contact","type":"exact"},{"name":"PerMit contact site","type":"exact"}],"termid":"GO:0160189"}


id: FYPO:0002937
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of any unspliced or incompletely spliced mRNA precursor measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0006551","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased pre-mRNA level","synonyms":[{"name":"decreased accumulation of pre-mRNA transcripts","type":"related"},{"name":"decreased pre-mRNA accumulation","type":"related"},{"name":"decreased pre-mRNA level during mitotic cell cycle","type":"related"},{"name":"decreased pre-mRNA level during vegetative growth","type":"exact"},{"name":"decreased pre-mRNA transcript level","type":"exact"},{"name":"reduced pre-mRNA level","type":"exact"}],"termid":"FYPO:0002937"}


id: GO:0030100
data:
  {"annotated_genes":["SJAG_04343","SJAG_04666","SJAG_00402","SJAG_03631","SJAG_03987","SJAG_03581","SJAG_02684","SJAG_00514","SJAG_04052","SJAG_00649","SJAG_03268","SJAG_04465","SJAG_01373"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76262,77192,85972,87047,88496,88775,98978,109259,109384],"is_not":false,"summary":null,"term":"GO:0030100"},{"annotations":[90649],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045806"},{"annotations":[107042,107689,114836],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000369"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of endocytosis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular component organization","termid":"GO:0051128"},{"relation_name":"is_a","term_name":"regulation of vesicle-mediated transport","termid":"GO:0060627"},{"relation_name":"regulates","term_name":"endocytosis","termid":"GO:0006897"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00402":null,"SJAG_00514":null,"SJAG_00649":null,"SJAG_01373":null,"SJAG_02684":null,"SJAG_03268":null,"SJAG_03581":null,"SJAG_03631":null,"SJAG_03987":null,"SJAG_04052":null,"SJAG_04343":null,"SJAG_04465":null,"SJAG_04666":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of endocytosis","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0030100","terms_by_termid":{"GO:0030100":null,"GO:0045806":null,"GO:2000369":null}}


id: GO:0010209
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a vacuolar sorting signal, a specific peptide sequence that acts as a signal to localize the protein within the vacuole.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal sequence binding","termid":"GO:0005048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005048"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005048","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"vacuolar sorting signal binding","termid":"GO:0010209"}


id: PBO:0013019
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pombe TG lipase","termid":"PBO:0013019"}


id: PBO:0060406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-alpha-acetyltransferase 20, NatB catalytic subunit","termid":"PBO:0060406"}


id: PBO:0089181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIM22 inner membrane protein insertion complex subunit Tim22","termid":"PBO:0089181"}


id: PBO:0074107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 28 member 3","termid":"PBO:0074107"}


id: PBO:0062003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily H member 2","termid":"PBO:0062003"}


id: FYPO:0007594
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitophagy, i.e. autophagic degradation of the mitochondria, does not occur when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished mitophagy","termid":"FYPO:0000499"},{"relation_name":"is_a","term_name":"abnormal mitophagy during nitrogen starvation","termid":"FYPO:0007593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished mitophagy during nitrogen starvation","synonyms":[{"name":"abolished autophagy of mitochondrion during nitrogen depletion","type":"exact"},{"name":"abolished autophagy of mitochondrion during nitrogen deprivation","type":"exact"},{"name":"abolished autophagy of mitochondrion during nitrogen starvation","type":"exact"},{"name":"autophagy of mitochondrion abolished during nitrogen starvation","type":"exact"}],"termid":"FYPO:0007594"}


id: GO:0043198
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines.","definition_xrefs":["GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"dendrite","termid":"GO:0030425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"dendritic shaft","secondary_identifiers":["NIF_Subcellular:sao2034472720"],"synonyms":[{"name":"trunk","type":"related"}],"termid":"GO:0043198"}


id: GO:1905029
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of membrane depolarization during AV node cell action potential.","definition_xrefs":["GOC:BHF_miRNA","GO_REF:0000058","GOC:mtg_cardiac_conduct_nov11","GOC:rph","PMID:19726871","GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of membrane depolarization during cardiac muscle cell action potential","termid":"GO:1900827"},{"relation_name":"is_a","term_name":"regulation of membrane depolarization during AV node cell action potential","termid":"GO:1905027"},{"relation_name":"positively_regulates","term_name":"membrane depolarization during AV node cell action potential","termid":"GO:0086045"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of membrane depolarization during AV node cell action potential","synonyms":[{"name":"activation of membrane depolarization during AV node cardiac muscle cell action potential","type":"narrow"},{"name":"activation of membrane depolarization during AV node cell action potential","type":"narrow"},{"name":"activation of membrane depolarization during atrioventricular node cardiac muscle cell action potential","type":"narrow"},{"name":"positive regulation of membrane depolarization during AV node cardiac muscle cell action potential","type":"exact"},{"name":"positive regulation of membrane depolarization during atrioventricular node cardiac muscle cell action potential","type":"exact"},{"name":"up regulation of membrane depolarization during AV node cardiac muscle cell action potential","type":"exact"},{"name":"up regulation of membrane depolarization during AV node cell action potential","type":"exact"},{"name":"up regulation of membrane depolarization during atrioventricular node cardiac muscle cell action potential","type":"exact"},{"name":"up-regulation of membrane depolarization during AV node cardiac muscle cell action potential","type":"exact"},{"name":"up-regulation of membrane depolarization during AV node cell action potential","type":"exact"},{"name":"up-regulation of membrane depolarization during atrioventricular node cardiac muscle cell action potential","type":"exact"},{"name":"upregulation of membrane depolarization during AV node cardiac muscle cell action potential","type":"exact"},{"name":"upregulation of membrane depolarization during AV node cell action potential","type":"exact"},{"name":"upregulation of membrane depolarization during atrioventricular node cardiac muscle cell action potential","type":"exact"}],"termid":"GO:1905029"}


id: PBO:0057645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1237","termid":"PBO:0057645"}


id: PBO:0066910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 211","termid":"PBO:0066910"}


id: GO:0005307
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: choline(out) + Na+(out) = choline(in) + Na+(in).","definition_xrefs":["TC:2.A.22.3.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"choline transmembrane transporter activity","termid":"GO:0015220"},{"relation_name":"is_a","term_name":"solute:sodium symporter activity","termid":"GO:0015370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"choline:sodium symporter activity","secondary_identifiers":["RHEA:76443"],"synonyms":[{"name":"sodium/choline symporter activity","type":"exact"}],"termid":"GO:0005307"}


id: GO:2000465
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of glycogen (starch) synthase activity.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transferase activity","termid":"GO:0051338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of glycogen (starch) synthase activity","synonyms":[{"name":"regulation of UDP-glucose-glycogen glucosyltransferase activity","type":"exact"},{"name":"regulation of UDP-glucose:glycogen 4-alpha-D-glucosyltransferase activity","type":"exact"},{"name":"regulation of UDP-glycogen synthase activity","type":"exact"},{"name":"regulation of UDPG-glycogen synthetase activity","type":"exact"},{"name":"regulation of UDPG-glycogen transglucosylase activity","type":"exact"},{"name":"regulation of UDPglucose:glycogen 4-alpha-D-glucosyltransferase activity","type":"exact"},{"name":"regulation of glycogen (starch) synthetase activity","type":"exact"},{"name":"regulation of uridine diphosphoglucose-glycogen glucosyltransferase activity","type":"exact"}],"termid":"GO:2000465"}


id: PBO:0048625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GIPC PDZ domain containing family member 1","termid":"PBO:0048625"}


id: PBO:0075689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"steroid 5 alpha-reductase 1","termid":"PBO:0075689"}


id: GO:0032144
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A homodimeric protein complex that possesses 4-aminobutyrate transaminase activity.","definition_xrefs":["GOC:mah","PMID:15528998"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"4-aminobutyrate transaminase complex","synonyms":[{"name":"ABAT complex","type":"exact"},{"name":"GABA transaminase complex","type":"exact"},{"name":"GABA-T complex","type":"exact"}],"termid":"GO:0032144"}


id: GO:0097320
data:
  {"annotated_genes":["SJAG_00185","SJAG_00700"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102914,107893],"is_not":false,"summary":null,"term":"GO:0097320"}]},"cv_name":"biological_process","definition":"A membrane tubulation process occurring in a plasma membrane.","definition_xrefs":["PMID:15252009","GOC:pr","PMID:20730103","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane organization","termid":"GO:0007009"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00185":null,"SJAG_00700":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"plasma membrane tubulation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"membrane tubulation","type":"broad"},{"name":"vesicle scission","type":"related"}],"termid":"GO:0097320","terms_by_termid":{"GO:0097320":null}}


id: PBO:0067359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 457, pseudogene","termid":"PBO:0067359"}


id: PR:Q9P6K0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1527.03 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P6K0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized HTH La-type RNA-binding protein C1527.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1527.03","synonyms":[{"name":"Spom972h-SPAC1527.03","type":"exact"}],"termid":"PR:Q9P6K0"}


id: PR:P0CH06
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ubi1 gene.","definition_xrefs":["UniProtKB:P0CH06","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-60S ribosomal protein L40-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11G7.04","synonyms":[{"name":"SPAC11G7.04","type":"related"},{"name":"Spom972h-ubi1","type":"exact"}],"termid":"PR:P0CH06"}


id: PBO:0082306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Aspartic beta semi-aldehyde dehydrogenase; catalyzes the second step in the common pathway for methionine and threonine biosynthesis; expression regulated by Gcn4p and the general control of amino acid synthesis","termid":"PBO:0082306"}


id: GO:0003311
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire specialized structural and functional features that characterize a pancreatic delta cell. A delta cell is a cell of the pancreas that produces somatostatin.","definition_xrefs":["GOC:dph","PMID:11076772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enteroendocrine cell differentiation","termid":"GO:0035883"},{"relation_name":"part_of","term_name":"endocrine pancreas development","termid":"GO:0031018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pancreatic D cell differentiation","synonyms":[{"name":"pancreatic delta cell differentiation","type":"exact"}],"termid":"GO:0003311"}


id: PBO:0090599
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3-H4 chaperone Spt2","termid":"PBO:0090599"}


id: GO:0150008
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Endocytosis of large regions of presynaptic membrane after intense stimulation-mediated fusion of multiple synaptic vesicles. Bulk endocytosis is triggered by high loads of membrane addition through exocytosis of synaptic vesicles and elevated concentration of calcium in the presynapse.","definition_xrefs":["PMID:18579735","PMID:28391090","GOC:aruk","GOC:bc","GOC:ha","PMID:18250322","PMID:26430111","PMID:19266323"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synaptic vesicle endocytosis","termid":"GO:0048488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"bulk synaptic vesicle endocytosis","synonyms":[{"name":"ADBE","type":"exact"},{"name":"activity-dependent bulk endocytosis","type":"exact"},{"name":"activity-dependent bulk synaptic vesicle endocytosis","type":"exact"},{"name":"bulk endocytosis","type":"exact"}],"termid":"GO:0150008"}


id: PBO:0081530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 440","termid":"PBO:0081530"}


id: PBO:0041683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colon adenocarcinoma hypermethylated","termid":"PBO:0041683"}


id: PBO:0079300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha tocopherol transfer protein like","termid":"PBO:0079300"}


id: PBO:0063574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PER3 pseudogene 1","termid":"PBO:0063574"}


id: PBO:0082876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Covalently linked cell wall mannoprotein; major constituent of the cell wall; plays a role in stabilizing the cell wall; involved in low pH resistance; precursor is GPI-anchored","termid":"PBO:0082876"}


id: PBO:0048523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDP-D-glucose phosphorylase 1","termid":"PBO:0048523"}


id: GO:0072396
data:
  {"annotated_genes":["SJAG_03048","SJAG_01837","SJAG_01805","SJAG_00082","SJAG_04183","SJAG_04140","SJAG_04332"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86095,98433,107222,112695,89874],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140429"},{"annotations":[100203],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072429"},{"annotations":[98444],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072441"},{"annotations":[86100],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072479"},{"annotations":[98445],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990820"},{"annotations":[90615,98446],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072435"}]},"cv_name":"biological_process","definition":"A process that occurs in response to signals generated as a result of cell cycle checkpoint signaling.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to biotic stimulus","termid":"GO:0071216"},{"relation_name":"is_a","term_name":"cellular response to endogenous stimulus","termid":"GO:0071495"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_03048":null,"SJAG_04140":null,"SJAG_04183":null,"SJAG_04332":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cell cycle checkpoint signaling","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0072405","GO:0072408"],"synonyms":[{"name":"G1/S transition checkpoint effector process","type":"related"},{"name":"G2/M transition checkpoint effector process","type":"related"},{"name":"cell cycle checkpoint effector process","type":"exact"},{"name":"response to G1/S transition checkpoint signaling","type":"related"},{"name":"response to G2/M transition checkpoint signaling","type":"related"},{"name":"response to signal involved in G1/S transition checkpoint","type":"related"},{"name":"response to signal involved in G2/M transition checkpoint","type":"related"},{"name":"response to signal involved in cell cycle checkpoint","type":"exact"}],"termid":"GO:0072396","terms_by_termid":{"GO:0072429":null,"GO:0072435":null,"GO:0072441":null,"GO:0072479":null,"GO:0140429":null,"GO:1990820":null}}


id: FYPO:0007837
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleosome occupancy is lower than normal at subtelomeric regions. Nucleosome occupancy measures the tendency for DNA in a given region to be packaged into nucleosomes.","definition_xrefs":["PomBase:mah","PMID:31837996"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nucleosome positioning in heterochromatin","termid":"FYPO:0000855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000641","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased nucleosome occupancy at subtelomere","synonyms":[{"name":"decreased nucleosome occupancy at subtelomere during mitotic cell cycle","type":"related"},{"name":"decreased nucleosome occupancy at subtelomere during vegetative growth","type":"exact"},{"name":"reduced nucleosome occupancy at subtelomere","type":"exact"}],"termid":"FYPO:0007837"}


id: SO:0000829
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosome originating in a nucleomorph.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"nucleomorphic_sequence","termid":"SO:0000739"},{"relation_name":"is_a","term_name":"chromosome","termid":"SO:0000340"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleomorphic_chromosome","synonyms":[{"name":"nucleomorphic chromosome","type":"exact"}],"termid":"SO:0000829"}


id: PBO:0057667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1258","termid":"PBO:0057667"}


id: FYPO:0001973
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nuclear division, cytokinesis and subsequent cell separation are abnormal, resulting in the formation of a cell in which an undivided mass of DNA is located on one side of the septum. The septum does not degrade.","definition_xrefs":["PomBase:mah","PomBase:vw","PMID:3283148"],"gene_count":0,"genotype_count":0,"name":"obsolete abnormal cell separation after cytokinesis, with abnormal nuclear division (obsolete FYPO:0001973)","synonyms":[{"name":"abnormal cell separation after cytokinesis, with abnormal nuclear division during mitotic cell cycle","type":"related"},{"name":"abnormal cell separation after cytokinesis, with abnormal nuclear division during vegetative growth","type":"exact"},{"name":"abnormal mitotic cytokinetic cell separation, with abnormal nuclear division","type":"exact"}],"termid":"FYPO:0001973"}


id: PR:000060241
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nuclear fusion protein tht1 (Schizosaccharomyces pombe) that has been palmitoylated at positions equivalent to Cys-65 and Cys-78 of the amino acid sequence represented by UniProtKB:Q09684. Example: UniProtKB:Q09684, Cys-65/Cys-78, MOD:00047.","definition_xrefs":["PomBase:MLR","PMID:36650056","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tht1/Palm-C65C78","pombase_gene_id":"SPAC13C5.03","synonyms":[{"name":"PomBase_original_PRO_term_name: nuclear fusion protein tht1 palmitoylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-tht1/Palm:1","type":"exact"},{"name":"Tht1/Palm-C65C78","type":"exact"},{"name":"UniProtKB:Q09684, Cys-65/Cys-78, MOD:00115","type":"narrow"}],"termid":"PR:000060241"}


id: GO:0006655
data:
  {"annotated_genes":["SJAG_03563","SJAG_04317","SJAG_00168","SJAG_03700"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89104,102230,113842,109043],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032049"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of phosphatidylglycerols, any of a class of phospholipids in which the phosphatidyl group is esterified to the hydroxyl group of glycerol.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylglycerol metabolic process","termid":"GO:0046471"},{"relation_name":"is_a","term_name":"glycerophospholipid biosynthetic process","termid":"GO:0046474"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00168":null,"SJAG_03563":null,"SJAG_03700":null,"SJAG_04317":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"phosphatidylglycerol biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"phosphatidylglycerol anabolism","type":"exact"},{"name":"phosphatidylglycerol biosynthesis","type":"exact"},{"name":"phosphatidylglycerol formation","type":"exact"},{"name":"phosphatidylglycerol synthesis","type":"exact"}],"termid":"GO:0006655","terms_by_termid":{"GO:0032049":null}}


id: PBO:0012563
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein ubiquitin ligase","termid":"PBO:0012563"}


id: PBO:0070588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 54","termid":"PBO:0070588"}


id: PR:Q9UT29
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC8F11.08c gene.","definition_xrefs":["UniProtKB:Q9UT29","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C8F11.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC8F11.08c","synonyms":[{"name":"Spom972h-SPAC8F11.08c","type":"exact"}],"termid":"PR:Q9UT29"}


id: PBO:0052600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin subunit alpha 7","termid":"PBO:0052600"}


id: PBO:0047117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 163 member B","termid":"PBO:0047117"}


id: GO:2000947
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of amylopectin catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of starch catabolic process","termid":"GO:2000883"},{"relation_name":"is_a","term_name":"positive regulation of amylopectin metabolic process","termid":"GO:2000944"},{"relation_name":"is_a","term_name":"regulation of amylopectin catabolic process","termid":"GO:2000945"},{"relation_name":"positively_regulates","term_name":"amylopectin catabolic process","termid":"GO:2000897"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0005975"],"is_obsolete":false,"name":"positive regulation of amylopectin catabolic process","synonyms":[{"name":"positive regulation of Amylopectin catabolism","type":"exact"}],"termid":"GO:2000947"}


id: PBO:0026912
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_duration_of_protein_localization_to_actomyosin_contractile_ring","termid":"PBO:0026912"}


id: GO:0090411
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a brassinosteroid.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid binding","termid":"GO:0005496"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0008289","GO:0003674"],"is_obsolete":false,"name":"brassinosteroid binding","termid":"GO:0090411"}


id: GO:0001833
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The proliferation of cells in the inner cell mass.","definition_xrefs":["ISBN:0124020607","GOC:dph","ISBN:0198542771","GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population proliferation","termid":"GO:0008283"},{"relation_name":"part_of","term_name":"blastocyst growth","termid":"GO:0001832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inner cell mass cell proliferation","termid":"GO:0001833"}


id: PBO:0061125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NLR family pyrin domain containing 14","termid":"PBO:0061125"}


id: PBO:0041703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calmodulin 1 pseudogene 1","termid":"PBO:0041703"}


id: GO:1990326
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A collagen homotrimer of alpha1(XXVIII) chains.","definition_xrefs":["GOC:bhm","PMID:17876790"],"direct_ancestors":[{"relation_name":"is_a","term_name":"collagen trimer","termid":"GO:0005581"},{"relation_name":"part_of","term_name":"collagen-containing extracellular matrix","termid":"GO:0062023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"collagen type XXVIII trimer","termid":"GO:1990326"}


id: PATO:0000352
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000352 metabolite composition value (obsolete PATO:0000352)","termid":"PATO:0000352"}


id: GO:0032301
data:
  {"annotated_genes":["SJAG_02226","SJAG_02748"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[102088,112452],"is_not":false,"summary":null,"term":"GO:0032301"}]},"cv_name":"cellular_component","definition":"A heterodimer involved in the recognition and repair of base-base and small insertion/deletion mismatches. In human the complex consists of two subunits, MSH2 and MSH6.","definition_xrefs":["PMID:11005803"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatch repair complex","termid":"GO:0032300"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02226":null,"SJAG_02748":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"MutSalpha complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"MMR complex","type":"broad"},{"name":"MSH2/MSH6 complex","type":"exact"}],"termid":"GO:0032301","terms_by_termid":{"GO:0032301":null}}


id: PBO:0031384
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_population_growth","termid":"PBO:0031384"}


id: PBO:0077301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 41A","termid":"PBO:0077301"}


id: GO:0150140
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of CD86 biosynthetic process.","definition_xrefs":["PMID:26936882","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glycoprotein biosynthetic process","termid":"GO:0010559"},{"relation_name":"regulates","term_name":"CD86 biosynthetic process","termid":"GO:0035781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of CD86 production","synonyms":[{"name":"regulation of CD86 biosynthetic process","type":"exact"}],"termid":"GO:0150140"}


id: PBO:0027035
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cytokinesis_in_presence_of_assembled_mitotic_spindle","termid":"PBO:0027035"}


id: FYPO:0002052
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which the frequency of occurrence of ascospore formation is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population phenotype","termid":"FYPO:0000003"},{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000257"],"is_obsolete":false,"name":"normal sporulation frequency","synonyms":[{"name":"normal ascospore formation frequency","type":"exact"},{"name":"normal sporulation occurrence","type":"exact"}],"termid":"FYPO:0002052"}


id: GO:1901577
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of alkane biosynthetic process.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"regulates","term_name":"alkane biosynthetic process","termid":"GO:0043447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of alkane biosynthetic process","synonyms":[{"name":"regulation of alkane anabolism","type":"exact"},{"name":"regulation of alkane biosynthesis","type":"exact"},{"name":"regulation of alkane formation","type":"exact"},{"name":"regulation of alkane synthesis","type":"exact"}],"termid":"GO:1901577"}


id: PBO:0090738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromatin binding FHA domain protein Tos4","termid":"PBO:0090738"}


id: GO:0031461
data:
  {"annotated_genes":["SJAG_03651","SJAG_04661","SJAG_00756","SJAG_00192","SJAG_00615","SJAG_04142","SJAG_04087","SJAG_03454","SJAG_03417","SJAG_01801","SJAG_02162","SJAG_02186","SJAG_05297","SJAG_03037","SJAG_03680","SJAG_02837","SJAG_04180","SJAG_00666","SJAG_00071","SJAG_00439","SJAG_04520","SJAG_03575","SJAG_02651","SJAG_05236","SJAG_02044","SJAG_05329","SJAG_01022","SJAG_03809","SJAG_03130","SJAG_02822","SJAG_03219","SJAG_00341","SJAG_04853","SJAG_04971","SJAG_03858","SJAG_03561","SJAG_04574","SJAG_03351","SJAG_01573","SJAG_03350","SJAG_01480","SJAG_03728","SJAG_02591","SJAG_04335","SJAG_00146","SJAG_01540","SJAG_02119","SJAG_01956","SJAG_04540"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[85343],"is_not":false,"summary":null,"term":"GO:0031461"},{"annotations":[103625,78882,96844,108237,78941,102201,89816,95654,77974,86432,97878,109147,91231,92664,87821,98337,96178,63122,95649],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005680"},{"annotations":[106499,90415,110006,113682,114789,92788],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043494"},{"annotations":[90589],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031463"},{"annotations":[101367,86946,92746,86995,92789,107279,84473],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0080008"},{"annotations":[107166],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031464"},{"annotations":[95422,78255,93556,107232],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035361"},{"annotations":[100893,90418,93836,106337,105099,86690],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043224"},{"annotations":[94515,98915,101038,84675,93837,86691,91609,111804],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019005"}]},"cv_name":"cellular_component","definition":"Any ubiquitin ligase complex in which the catalytic core consists of a member of the cullin family and a RING domain protein; the core is associated with one or more additional proteins that confer substrate specificity.","definition_xrefs":["PMID:15688063","PMID:15571813"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin ligase complex","termid":"GO:0000151"}],"gene_count":49,"genes_by_uniquename":{"SJAG_00071":null,"SJAG_00146":null,"SJAG_00192":null,"SJAG_00341":null,"SJAG_00439":null,"SJAG_00615":null,"SJAG_00666":null,"SJAG_00756":null,"SJAG_01022":null,"SJAG_01480":null,"SJAG_01540":null,"SJAG_01573":null,"SJAG_01801":null,"SJAG_01956":null,"SJAG_02044":null,"SJAG_02119":null,"SJAG_02162":null,"SJAG_02186":null,"SJAG_02591":null,"SJAG_02651":null,"SJAG_02822":null,"SJAG_02837":null,"SJAG_03037":null,"SJAG_03130":null,"SJAG_03219":null,"SJAG_03350":null,"SJAG_03351":null,"SJAG_03417":null,"SJAG_03454":null,"SJAG_03561":null,"SJAG_03575":null,"SJAG_03651":null,"SJAG_03680":null,"SJAG_03728":null,"SJAG_03809":null,"SJAG_03858":null,"SJAG_04087":null,"SJAG_04142":null,"SJAG_04180":null,"SJAG_04335":null,"SJAG_04520":null,"SJAG_04540":null,"SJAG_04574":null,"SJAG_04661":null,"SJAG_04853":null,"SJAG_04971":null,"SJAG_05236":null,"SJAG_05297":null,"SJAG_05329":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"cullin-RING ubiquitin ligase complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"CRL complex","type":"exact"},{"name":"cullin complex","type":"exact"},{"name":"cullin-RING ligase","type":"related"}],"termid":"GO:0031461","terms_by_termid":{"GO:0005680":null,"GO:0019005":null,"GO:0031461":null,"GO:0031463":null,"GO:0031464":null,"GO:0035361":null,"GO:0043224":null,"GO:0043494":null,"GO:0080008":null}}


id: PATO:0000030
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000030 enzyme composition (obsolete PATO:0000030)","termid":"PATO:0000030"}


id: PR:O14356
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tor1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14356"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol 3-kinase tor1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC30D10.10c","synonyms":[{"name":"PI3-kinase tor1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PI3K tor1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PtdIns-3-kinase tor1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-tor1","type":"exact"}],"termid":"PR:O14356"}


id: PBO:0043574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type IX alpha 2 chain","termid":"PBO:0043574"}


id: GO:1901487
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Positive regulation of transcription factor catabolism in response to increased oxygen levels, which results in negative regulation of the SREBP signaling pathway.","definition_xrefs":["GOC:vw","PMID:22833559","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of SREBP signaling pathway by positive regulation of transcription factor catabolic process in response to increased oxygen levels (obsolete GO:1901487)","synonyms":[{"name":"negative regulation of SREBP signaling by acceleration of SREBP degradation, in response to increased oxygen levels","type":"narrow"},{"name":"negative regulation of SREBP signaling by positive regulation of transcription factor catabolism in response to increased oxygen levels","type":"exact"},{"name":"negative regulation of SREBP signaling pathway by positive regulation of SREBP degradation, in response to elevated oxygen","type":"narrow"},{"name":"negative regulation of SREBP-mediated signaling pathway in presence of oxygen by positive regulation of transcription factor catabolic process","type":"related"},{"name":"negative regulation of SREBP-mediated signaling pathway in response to increased oxygen levels by positive regulation of transcription factor catabolic process","type":"exact"}],"termid":"GO:1901487"}


id: PR:Q9HDZ9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC589.05c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9HDZ9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0553 protein C589.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC589.05c","synonyms":[{"name":"Spom972h-SPAC589.05c","type":"exact"}],"termid":"PR:Q9HDZ9"}


id: PBO:0113236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-catalytic beta subunit of the oligosaccharyltransferase (OST) complex; the OST complex catalyzes N-linked glycosylation of newly synthesized proteins in the ER; forms a pocket with Ost2p involved in binding terminal glucose units of the donor glycan; human homolog DDOST can complement yeast growth defect during down-regulation of the yeast gene","termid":"PBO:0113236"}


id: GO:0070907
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-histidine(out) + histamine(in) = L-histidine(in) + histamine(out).","definition_xrefs":["GOC:dh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-histidine transmembrane transporter activity","termid":"GO:0005290"},{"relation_name":"is_a","term_name":"antiporter activity","termid":"GO:0015297"},{"relation_name":"is_a","term_name":"histamine transmembrane transporter activity","termid":"GO:0160173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"L-histidine:histamine antiporter activity","synonyms":[{"name":"histidine-histamine antiporter activity","type":"exact"},{"name":"histidine/histamine antiporter activity","type":"exact"},{"name":"histidine:histamine antiporter activity","type":"broad"}],"termid":"GO:0070907"}


id: MOD:00316
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to N4,N4-dimethyl-L-asparagine.","definition_xrefs":["RESID:AA0311","PubMed:8783012","PubMed:14570711","PubMed:12964758","Unimod:36#N"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dimethylated residue","termid":"MOD:00429"},{"relation_name":"is_a","term_name":"N-methylated residue","termid":"MOD:00602"},{"relation_name":"is_a","term_name":"methylated asparagine","termid":"MOD:00673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N4,N4-dimethyl-L-asparagine","synonyms":[{"name":"(2S)-2-amino-4-(dimethylamino)-4-oxobutanoic acid","type":"exact"},{"name":"2-amino-N4,N4-dimethylbutanediamic acid","type":"exact"},{"name":"Dimethyl","type":"related"},{"name":"MOD_RES N4,N4-dimethylasparagine","type":"exact"},{"name":"N(gamma),N(gamma)-dimethylasparagine","type":"exact"},{"name":"N4,N4-dimethyl-L-asparagine","type":"exact"},{"name":"N4,N4-dimethylated L-asparagine","type":"exact"},{"name":"N4Me2Asn","type":"exact"},{"name":"beta-dimethylasparagine","type":"related"},{"name":"di-Methylation","type":"related"}],"termid":"MOD:00316"}


id: FYPO:0005487
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of iron-sulfur cluster binding by a gene product (usually a protein) in a mutant is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal iron-sulfur cluster binding","termid":"FYPO:0001709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"decreased iron-sulfur cluster binding","synonyms":[{"name":"decreased iron-sulphur cluster binding","type":"exact"},{"name":"reduced iron-sulfur cluster binding","type":"exact"}],"termid":"FYPO:0005487"}


id: PBO:0064483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase kappa","termid":"PBO:0064483"}


id: GO:0035325
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a Toll-like protein, a pattern recognition receptor that binds pattern motifs from a variety of microbial sources to initiate an innate immune response.","definition_xrefs":["PMID:19076341"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"Toll-like receptor binding","synonyms":[{"name":"TLR binding","type":"exact"}],"termid":"GO:0035325"}


id: PBO:0031293
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mitotic_cell_cycle_checkpoint_phenotype","termid":"PBO:0031293"}


id: PBO:0061853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactomedin 3","termid":"PBO:0061853"}


id: PBO:0083733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential beta'-coat protein of the COPI coatomer; involved in ER-to-Golgi and Golgi-to-ER transport; contains WD40 domains that mediate cargo selective interactions; 45% sequence identity to mammalian beta'-COP","termid":"PBO:0083733"}


id: GO:0005953
data:
  {"annotated_genes":["SJAG_03029","SJAG_04923"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[91784,97442],"is_not":false,"summary":null,"term":"GO:0005953"}]},"cv_name":"cellular_component","definition":"A heterodimeric enzyme, composed of an alpha and a beta subunit. Participates in the post-translational C-terminal modification of several small GTPases, allowing their targeting to the membrane.","definition_xrefs":["PMID:9781874"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyprenyl diphosphate synthase complex","termid":"GO:0032476"},{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03029":null,"SJAG_04923":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"CAAX-protein geranylgeranyltransferase complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0005953","terms_by_termid":{"GO:0005953":null}}


id: PR:O36025
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mpd2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O36025"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GYF domain-containing protein mpd2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4F10.13c","synonyms":[{"name":"Spom972h-mpd2","type":"exact"}],"termid":"PR:O36025"}


id: PBO:0065644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase non-receptor type 22","termid":"PBO:0065644"}


id: PBO:0059635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO1 pseudogene 1","termid":"PBO:0059635"}


id: PBO:0001046
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally represses genes involved in cell surface adhesion","termid":"PBO:0001046"}


id: GO:0048196
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The matrix external to the plant plasma membrane, composed of the cell wall and middle lamella.","definition_xrefs":["GOC:mtg_sensu","PMID:11351084","GOC:jid","PMID:4327466"],"gene_count":0,"genotype_count":0,"name":"obsolete plant extracellular matrix (obsolete GO:0048196)","synonyms":[{"name":"middle lamella-containing extracellular matrix","type":"related"},{"name":"plant extracellular matrix","type":"exact"}],"termid":"GO:0048196"}


id: FYPO:0007248
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the duration of cell cycle arrest or delay due to regulation by the mitotic G2 DNA damage checkpoint is shorter than in wild type during a cellular response to ionizing radiation.","definition_xrefs":["PomBase:mah","PMID:9042863"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle regulation during cellular response to ionizing radiation","termid":"FYPO:0003489"},{"relation_name":"is_a","term_name":"decreased duration of mitotic G2 DNA damage checkpoint","termid":"FYPO:0004870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000002","FYPO:0000298","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"decreased duration of mitotic G2 DNA damage checkpoint during cellular response to ionizing radiation","synonyms":[{"name":"advanced mitotic G2 DNA damage checkpoint deactivation during cellular response to ionizing radiation","type":"exact"},{"name":"decreased duration of mitotic G2 DNA damage checkpoint during cellular response to IR","type":"exact"}],"termid":"FYPO:0007248"}


id: PBO:0017702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nicotinate phosphoribosyltransferase Npt1 (predicted)","termid":"PBO:0017702"}


id: GO:0006162
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete purine/pyrimidine nucleoside diphosphate reduction (obsolete GO:0006162)","synonyms":[{"name":"purine/pyrimidine nucleoside diphosphate reduction","type":"exact"}],"termid":"GO:0006162"}


id: PBO:0054024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1355","termid":"PBO:0054024"}


id: SO:0001315
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"N6_acetyladenosine is a modified adenosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_adenosine","termid":"SO:0001273"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N6_acetyladenosine","secondary_identifiers":["RNAMOD:102"],"synonyms":[{"name":"N6 acetyladenosine","type":"exact"},{"name":"N6-acetyladenosine","type":"exact"},{"name":"ac6A","type":"exact"}],"termid":"SO:0001315"}


id: PBO:0051136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-9","termid":"PBO:0051136"}


id: PBO:0003216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S12 (predicted)","termid":"PBO:0003216"}


id: PBO:0065119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase C substrate 80K-H","termid":"PBO:0065119"}


id: PBO:0067656
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 833, pseudogene","termid":"PBO:0067656"}


id: GO:0050700
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a CARD (N-terminal caspase recruitment) domain, a protein-protein interaction domain that belongs to the death domain-fold superfamily. These protein molecule families are similar in structure with each consisting of six or seven anti-parallel alpha-helices that form highly specific homophilic interactions between signaling partners. CARD exists in the N-terminal prodomains of several caspases and in apoptosis-regulatory proteins and mediates the assembly of CARD-containing proteins that participate in activation or suppression of CARD carrying members of the caspase family.","definition_xrefs":["PMID:12054670"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"CARD domain binding","termid":"GO:0050700"}


id: PBO:0051540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IL6 antisense RNA 1","termid":"PBO:0051540"}


id: GO:1900258
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of beta1-adrenergic receptor activity.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of beta1-adrenergic receptor activity (obsolete GO:1900258)","synonyms":[{"name":"activation of beta1 adrenoceptor","type":"exact"},{"name":"activation of beta1-adrenergic receptor activity","type":"narrow"},{"name":"positive regulation of beta1 adrenoceptor","type":"exact"},{"name":"up regulation of beta1 adrenoceptor","type":"exact"},{"name":"up regulation of beta1-adrenergic receptor activity","type":"exact"},{"name":"up-regulation of beta1 adrenoceptor","type":"exact"},{"name":"up-regulation of beta1-adrenergic receptor activity","type":"exact"},{"name":"upregulation of beta1 adrenoceptor","type":"exact"},{"name":"upregulation of beta1-adrenergic receptor activity","type":"exact"}],"termid":"GO:1900258"}


id: FYPO:0004019
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mitochondrial electron transport from succinate to ubiquinone is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular respiration","termid":"FYPO:0000566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal mitochondrial electron transport, succinate to ubiquinone","synonyms":[{"name":"normal mitochondrial electron transport, succinate to ubiquinone, during mitotic cell cycle","type":"related"},{"name":"normal mitochondrial electron transport, succinate to ubiquinone, during vegetative growth","type":"exact"},{"name":"normal succinate cytochrome c oxidoreductase","type":"related"},{"name":"normal succinate dehydrogenase (ubiquinone) activity and ubiquinol-cytochrome-c reductase activity","type":"related"}],"termid":"FYPO:0004019"}


id: GO:0006793
data:
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id: PBO:0002906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26S proteasome regulatory particle assembly protein (predicted)","termid":"PBO:0002906"}


id: MOD:00152
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S'-(8alpha-FAD)-L-cystine.","definition_xrefs":["Unimod:50#C","RESID:AA0143","PubMed:10220347"],"direct_ancestors":[{"relation_name":"is_a","term_name":"FAD modified residue","termid":"MOD:00895"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-(8alpha-FAD)-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-[8alpha-riboflavin 5'-(trihydrogen diphosphate) 5'->5'-ester with adenosine]sulfanylpropanoic acid","type":"exact"},{"name":"8alpha-(S-cysteinyl)FAD","type":"exact"},{"name":"FAD","type":"related"},{"name":"Flavin adenine dinucleotide","type":"related"},{"name":"MOD_RES S-8alpha-FAD cysteine","type":"exact"},{"name":"S-(8alpha-FAD)-L-cysteine","type":"exact"},{"name":"S8aFADCys","type":"exact"}],"termid":"MOD:00152"}


id: PR:O14097
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- saf2 gene.","definition_xrefs":["UniProtKB:O14097","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WW domain-containing protein C2F3.14c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2F3.14c","synonyms":[{"name":"Spom972h-saf2","type":"exact"}],"termid":"PR:O14097"}


id: GO:0098676
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process by which a virus improves the virulence of its host for that host's respective host. Common in but not limited to bacteriophages; also occurs in phage-bearing bacteria infecting plants or animals for example. Mechanisms include the expression of factors that modulate a bacterial adhesion to a host cell, spread through host tissues, production of exotoxins or provide protection against host immune defenses.","definition_xrefs":["VZ:3965","PMID:11553559","PMID:8658163","PMID:10913072","PMID:22919604"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation by virus of host process","termid":"GO:0019048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation of host virulence by virus","termid":"GO:0098676"}


id: GO:0120500
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric E1 complex that activates the ubiquitin-like protein NEDD8. In humans the subunits are NAE1 (also known as APPBP1) and UBA3.","definition_xrefs":["PMID:21931660","PMID:12740388"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"NAE1-UBA3 complex","synonyms":[{"name":"APPBP1-UBA3 complex","type":"exact"},{"name":"NAE","type":"exact"},{"name":"NEDD8 activating enzyme","type":"exact"}],"termid":"GO:0120500"}


id: PATO:0000768
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A consumption which is relatively low.","definition_xrefs":["PATOC:GVG"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000768 decreased consumption (obsolete PATO:0000768)","synonyms":[{"name":"decreased propensity to consume","type":"related"},{"name":"low consumption","type":"exact"}],"termid":"PATO:0000768"}


id: PBO:0049501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A clustered histone 8","termid":"PBO:0049501"}


id: GO:0046516
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving hypusine, N6-(4-amino-2-hydroxybutyl)-L-lysine.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular modified amino acid metabolic process","termid":"GO:0006575"},{"relation_name":"is_a","term_name":"L-amino acid metabolic process","termid":"GO:0170033"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid metabolic process","termid":"GO:0170041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"hypusine metabolic process","synonyms":[{"name":"hypusine metabolism","type":"exact"}],"termid":"GO:0046516"}


id: PBO:0048175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose-6-phosphatase catalytic subunit 2","termid":"PBO:0048175"}


id: FYPO:0006171
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitotic spindle elongation takes place during anaphase A. Normally, the spindle elongates immediately following assembly during prophase, remains at a static length during metaphase and anaphase A, and elongates further during anaphase B.","definition_xrefs":["PMID:21920317","PomBase:mah","PMID:9802907"],"direct_ancestors":[{"relation_name":"is_a","term_name":"premature mitotic spindle elongation","termid":"FYPO:0005417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001985","FYPO:0000002","FYPO:0000641","FYPO:0000054","FYPO:0005447","FYPO:0001320","FYPO:0000337"],"is_obsolete":false,"name":"mitotic spindle elongation during anaphase A","synonyms":[{"name":"abnormal mitotic spindle elongation during anaphase A","type":"exact"},{"name":"mitotic spindle elongation during anaphase A during vegetative growth","type":"exact"},{"name":"mitotic spindle extension during anaphase A","type":"exact"},{"name":"premature mitotic spindle elongation during anaphase","type":"related"},{"name":"spindle elongation during anaphase A during mitotic cell cycle","type":"related"},{"name":"spindle elongation during mitotic anaphase A","type":"exact"}],"termid":"FYPO:0006171"}


id: PBO:0091220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-acyl DHAP reductase Ayr2","termid":"PBO:0091220"}


id: GO:0047504
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (-)-menthol + NADP+ = (2S,5R)-menthone + H+ + NADPH.","definition_xrefs":["RHEA:13917","EC:1.1.1.207"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"(-)-menthol dehydrogenase activity","secondary_identifiers":["UM-BBD_reactionID:r1182","KEGG_REACTION:R02177","MetaCyc:--MENTHOL-DEHYDROGENASE-RXN"],"synonyms":[{"name":"(-)-menthol:NADP+ oxidoreductase activity","type":"related"},{"name":"monoterpenoid dehydrogenase activity","type":"broad"}],"termid":"GO:0047504"}


id: PBO:0068179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 486","termid":"PBO:0068179"}


id: PBO:0111496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exon junction complex associated RNA-binding protein Rns1","termid":"PBO:0111496"}


id: GO:0004351
data:
  {"annotated_genes":["SJAG_00937"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78435],"is_not":false,"summary":null,"term":"GO:0004351"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-glutamate = 4-aminobutanoate + CO2.","definition_xrefs":["EC:4.1.1.15"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00937":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"glutamate decarboxylase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:GLUTDECARBOX-RXN","Reactome:R-HSA-888577","RHEA:17785","Reactome:R-HSA-888572"],"synonyms":[{"name":"L-aspartate-alpha-decarboxylase activity","type":"related"},{"name":"L-glutamate 1-carboxy-lyase (4-aminobutanoate-forming)","type":"related"},{"name":"L-glutamate 1-carboxy-lyase activity","type":"related"},{"name":"L-glutamate alpha-decarboxylase activity","type":"related"},{"name":"L-glutamic acid decarboxylase activity","type":"related"},{"name":"L-glutamic decarboxylase activity","type":"related"},{"name":"aspartic alpha-decarboxylase","type":"broad"},{"name":"cysteic acid decarboxylase activity","type":"related"},{"name":"gamma-glutamate decarboxylase activity","type":"related"}],"termid":"GO:0004351","terms_by_termid":{"GO:0004351":null}}


id: PR:O74345
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ucp3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74345"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBA domain-containing protein 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21D10.05c","synonyms":[{"name":"Spom972h-ucp3","type":"exact"}],"termid":"PR:O74345"}


id: PBO:0028807
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_genetic_imprinting_at_mating-type_locus","termid":"PBO:0028807"}


id: GO:1903709
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of an uterine gland over time, from its formation to the mature structure.","definition_xrefs":["GO_REF:0000094","PMID:23619340","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gland development","termid":"GO:0048732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"uterine gland development","synonyms":[{"name":"endometrial gland development","type":"exact"},{"name":"endometrium gland development","type":"exact"},{"name":"glandulae uterinae development","type":"related"},{"name":"glandular part of endometrium development","type":"related"},{"name":"set of uterine glands development","type":"related"},{"name":"uterine glands development","type":"exact"},{"name":"uterine glands set development","type":"exact"}],"termid":"GO:1903709"}


id: GO:0072063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the short descending thin limb over time, from its formation to the mature structure. The short descending thin limb is the descending thin limb of a short nephron that has a squamous epithelial morphology.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron epithelium development","termid":"GO:0072009"},{"relation_name":"is_a","term_name":"descending thin limb development","termid":"GO:0072022"},{"relation_name":"part_of","term_name":"short nephron development","termid":"GO:0072030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"short descending thin limb development","termid":"GO:0072063"}


id: MOD:00013
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to an L-aspartic acid.","definition_xrefs":["DeltaMass:0","PubMed:8089117","ChEBI:29958","PubMed:1097438","PubMed:339692","PubMed:4399050","RESID:AA0004","PubMed:9521123","PubMed:5764436","PubMed:6692818","PubMed:9582379"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue","termid":"MOD:01441"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-aspartic acid residue","synonyms":[{"name":"(2S)-2-aminobutanedioic acid","type":"exact"},{"name":"2-azanylbutanedioic acid","type":"exact"},{"name":"Asp","type":"exact"},{"name":"L-aspartic acid","type":"exact"},{"name":"aminosuccinic acid","type":"exact"}],"termid":"MOD:00013"}


id: PBO:0077620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymosin beta 10 pseudogene 1","termid":"PBO:0077620"}


id: PBO:0002907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNF2 family helicase Swr1","termid":"PBO:0002907"}


id: PBO:0109351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA sno530","termid":"PBO:0109351"}


id: PR:Q9USZ2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A transportin-3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02991","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C11G11.07 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC11G11.07","secondary_identifiers":["UniProtKB:Q9USZ2"],"synonyms":[{"name":"Spom972h-TNPO3","type":"exact"}],"termid":"PR:Q9USZ2"}


id: GO:0045625
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of T-helper 1 cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T-helper 1 type immune response","termid":"GO:0002825"},{"relation_name":"is_a","term_name":"regulation of T-helper cell differentiation","termid":"GO:0045622"},{"relation_name":"regulates","term_name":"T-helper 1 cell differentiation","termid":"GO:0045063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of T-helper 1 cell differentiation","synonyms":[{"name":"regulation of T-helper 1 cell development","type":"related"}],"termid":"GO:0045625"}


id: FYPO:0004587
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which a cell population does not grow in a medium containing urea as the nitrogen source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished vegetative cell population growth","termid":"FYPO:0001575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0001985","FYPO:0002057","FYPO:0005447","FYPO:0000003","FYPO:0002058","FYPO:0002060"],"is_obsolete":false,"name":"abolished cell population growth on urea nitrogen source","synonyms":[{"name":"abolished urea utilization","type":"related"},{"name":"abolished vegetative cell population growth on urea nitrogen source","type":"exact"},{"name":"cell population growth on urea nitrogen source abolished","type":"exact"}],"termid":"FYPO:0004587"}


id: GO:0097498
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any endothelial tube morphogenesis process by which the tube is increased in length.","definition_xrefs":["GOC:dgh","PMID:23698350"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endothelial tube morphogenesis","termid":"GO:0061154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endothelial tube lumen extension","termid":"GO:0097498"}


id: PBO:0065394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 20S subunit alpha 2","termid":"PBO:0065394"}


id: FYPO:0004175
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A biological process phenotype in which the observed mating efficiency, as determined by counting zygotes, asci, and sometimes spores, is lower than normal in cells of the h- mating type.","definition_xrefs":["PomBase:mah","PMID:8668157","PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased mating efficiency","termid":"FYPO:0000708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"decreased mating efficiency in h- cells","synonyms":[{"name":"reduced mating efficiency in h- cells","type":"exact"}],"termid":"FYPO:0004175"}


id: GO:0046989
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer, in a beta 1,3 linkage, of D-glucuronic acid (GlcUA) from UDP-GlcUA to the disaccharide galactosyl beta-1,3 N-acetylgalactosamine, a common component of glycoproteins and glycolipids.","definition_xrefs":["GOC:bf","PMID:12511570"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucuronosyltransferase activity","termid":"GO:0015020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"galactosyl beta-1,3 N-acetylgalactosamine beta-1,3-glucuronosyltransferase activity","termid":"GO:0046989"}


id: FYPO:0002695
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of methylenetetrahydrofolate reductase (NADPH) activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal oxidoreductase activity","termid":"FYPO:0000689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000652","FYPO:0001985","FYPO:0000661","FYPO:0000654"],"is_obsolete":false,"name":"abnormal methylenetetrahydrofolate reductase (NADPH) activity","termid":"FYPO:0002695"}


id: GO:0009609
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a symbiotic bacterium, a bacterium living in close physical association with another organism.","definition_xrefs":["GOC:hb","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to symbiont","termid":"GO:0009608"},{"relation_name":"is_a","term_name":"response to bacterium","termid":"GO:0009617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to symbiotic bacterium","synonyms":[{"name":"response to symbiotic bacteria","type":"exact"}],"termid":"GO:0009609"}


id: GO:0071552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a RIP homotypic interaction motif (RHIM) interaction.","definition_xrefs":["GOC:amm","PMID:11734559"],"gene_count":0,"genotype_count":0,"name":"obsolete RIP homotypic interaction motif-mediated complex assembly (obsolete GO:0071552)","synonyms":[{"name":"RHIM-mediated complex assembly","type":"exact"}],"termid":"GO:0071552"}


id: GO:0009038
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + undecaprenol = ADP + undecaprenyl phosphate.","definition_xrefs":["EC:2.7.1.66","RHEA:23752"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016301","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"undecaprenol kinase activity","synonyms":[{"name":"ATP:undecaprenol phosphotransferase activity","type":"related"},{"name":"C55-isoprenoid alcohol kinase activity","type":"related"},{"name":"C55-isoprenoid alcohol phosphokinase activity","type":"related"},{"name":"C55-isoprenyl alcohol phosphokinase activity","type":"related"},{"name":"isoprenoid alcohol kinase (phosphorylating)","type":"broad"},{"name":"isoprenoid alcohol kinase activity","type":"broad"},{"name":"isoprenoid alcohol phosphokinase activity","type":"broad"},{"name":"isoprenoid-alcohol kinase activity","type":"broad"},{"name":"polyisoprenol kinase activity","type":"broad"}],"termid":"GO:0009038"}


id: FYPO:0007309
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 8 of histone H4 in centromere outer repeat regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H4 acetylation at centromere outer repeat during vegetative growth","termid":"FYPO:0002382"},{"relation_name":"is_a","term_name":"increased histone H4-K8 acetylation during vegetative growth","termid":"FYPO:0005308"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0002274","FYPO:0002494"],"is_obsolete":false,"name":"increased histone H4-K8 acetylation at centromere outer repeat during vegetative growth","synonyms":[{"name":"increased histone H4-K8 acetylation at centromere otr during vegetative growth","type":"exact"},{"name":"increased histone H4-K8 acetylation at centromere outer repeat during mitotic cell cycle","type":"related"},{"name":"increased histone H4-K8 acetylation at centromeric outer repeat region during vegetative growth","type":"exact"},{"name":"increased histone H4-K8 acetylation at pericentric region during vegetative growth","type":"related"},{"name":"increased histone H4-K8 acetylation at pericentromeric region during vegetative growth","type":"related"},{"name":"increased histone H4K8 acetylation at centromere outer repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0007309"}


id: GO:1900177
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of aflatoxin biosynthetic process.","definition_xrefs":["GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"is_a","term_name":"regulation of secondary metabolite biosynthetic process","termid":"GO:1900376"},{"relation_name":"regulates","term_name":"aflatoxin biosynthetic process","termid":"GO:0045122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0044281","GO:0019748","GO:0008150"],"is_obsolete":false,"name":"regulation of aflatoxin biosynthetic process","synonyms":[{"name":"regulation of aflatoxin anabolism","type":"exact"},{"name":"regulation of aflatoxin biosynthesis","type":"exact"},{"name":"regulation of aflatoxin formation","type":"exact"},{"name":"regulation of aflatoxin synthesis","type":"exact"}],"termid":"GO:1900177"}


id: PBO:0057456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 575","termid":"PBO:0057456"}


id: GO:0097330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 5-fluoro-2'-deoxyuridine stimulus. 5-fluoro-2'-deoxyuridine is a pyrimidine 2'-deoxyribonucleoside compound having 5-fluorouracil as the nucleobase; it is used to treat hepatic metastases of gastrointestinal adenocarcinomas and for palliation in malignant neoplasms of the liver and gastrointestinal tract.","definition_xrefs":["GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organonitrogen compound","termid":"GO:0010243"},{"relation_name":"is_a","term_name":"response to organic cyclic compound","termid":"GO:0014070"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to 5-fluoro-2'-deoxyuridine","termid":"GO:0097330"}


id: GO:0015279
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A ligand-gated ion channel activity which transports calcium in response to emptying of intracellular calcium stores.","definition_xrefs":["GOC:tb","GOC:dph","PMID:15788710"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium channel activity","termid":"GO:0005262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"store-operated calcium channel activity","secondary_identifiers":["Reactome:R-HSA-434798"],"termid":"GO:0015279"}


id: GO:0140724
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of patulin.","definition_xrefs":["PMID:25625822"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of polyketide biosynthetic process","termid":"GO:1900734"},{"relation_name":"is_a","term_name":"positive regulation of alcohol biosynthetic process","termid":"GO:1902932"},{"relation_name":"positively_regulates","term_name":"patulin biosynthetic process","termid":"GO:0140723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0019748"],"is_obsolete":false,"name":"positive regulation of patulin biosynthetic process","synonyms":[{"name":"positive regulation of patulin anabolism","type":"exact"},{"name":"positive regulation of patulin formation","type":"exact"},{"name":"positive regulation of patulin synthesis","type":"exact"}],"termid":"GO:0140724"}


id: PBO:0043467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CNOT6L pseudogene 1","termid":"PBO:0043467"}


id: GO:1902089
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any cell wall polysaccharide catabolic process that is involved in lateral root development.","definition_xrefs":["PMID:23479623","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall polysaccharide catabolic process","termid":"GO:0044347"},{"relation_name":"part_of","term_name":"lateral root development","termid":"GO:0048527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0071554"],"is_obsolete":false,"name":"cell wall polysaccharide catabolic process involved in lateral root development","synonyms":[{"name":"cell wall polysaccharide breakdown involved in lateral root development","type":"exact"}],"termid":"GO:1902089"}


id: GO:0052797
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: [X]-4-O-methyl-D-glucuronic acid + H2O = [X]-OH + methyl-D-glucuronic acid. This reaction is the hydrolysis of the ester linkage between 4-O-methyl-D-glucuronic acid (MeGlcA) and an alcohol (-OH) group attached to a molecule, denoted here as [X].","definition_xrefs":["PMID:16876163","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0016788","GO:0003824"],"is_obsolete":false,"name":"4-O-methyl-glucuronoyl methylesterase activity","synonyms":[{"name":"glucuronoyl esterase activity","type":"broad"}],"termid":"GO:0052797"}


id: MOD:02075
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that contains an L-tyrosine residue coordinated to one or more metal atoms or metal clusters.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metal or metal cluster coordinated L-tyrosine residue","termid":"MOD:02075"}


id: GO:1901283
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 5,6,7,8-tetrahydromethanopterin.","definition_xrefs":["GOC:yaf","GOC:TermGenie","UniPathway:UPA00065"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid metabolic process","termid":"GO:0043648"},{"relation_name":"is_a","term_name":"tetrahydromethanopterin metabolic process","termid":"GO:2001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"5,6,7,8-tetrahydromethanopterin metabolic process","synonyms":[{"name":"5,6,7,8-tetrahydromethanopterin metabolism","type":"exact"}],"termid":"GO:1901283"}


id: GO:0050975
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory perception of mechanical stimulus","termid":"GO:0050954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sensory perception of touch","secondary_identifiers":["Wikipedia:Touch"],"synonyms":[{"name":"perception of touch","type":"exact"},{"name":"tactile sense","type":"exact"},{"name":"taction","type":"exact"},{"name":"tactition","type":"exact"}],"termid":"GO:0050975"}


id: PATO:0000336
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color quality inhering in a bearer by virtue of the bearer's having color.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"color","termid":"PATO:0000014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colored","secondary_identifiers":["PATO:0000332"],"synonyms":[{"name":"pigmented","type":"related"}],"termid":"PATO:0000336"}


id: PBO:0000368
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally represses str1","termid":"PBO:0000368"}


id: PBO:0074447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small lysine rich protein 1","termid":"PBO:0074447"}


id: PBO:0056700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MEIS1 antisense RNA 3","termid":"PBO:0056700"}


id: GO:0071977
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Bacterial-type flagellum-dependent cell motility that results in the smooth movement of a cell through a liquid medium.","definition_xrefs":["GOC:cilia","PMID:18461074"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial-type flagellum-dependent cell motility","termid":"GO:0071973"},{"relation_name":"is_a","term_name":"cell swimming","termid":"GO:0071975"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bacterial-type flagellum-dependent swimming motility","synonyms":[{"name":"bacterial-type flagellar swimming motility","type":"related"},{"name":"bacterial-type flagellum-mediated cell swimming","type":"exact"}],"termid":"GO:0071977"}


id: GO:0031417
data:
  {"annotated_genes":["SJAG_04131","SJAG_03215","SJAG_06449"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[99629,101514,108811],"is_not":false,"summary":null,"term":"GO:0031417"}]},"cv_name":"cellular_component","definition":"A conserved complex that catalyzes the transfer of an acetyl group to the N-terminal residue of a protein acceptor molecule that has a Met-Ile, Met-Leu, Met-Trp, or Met-Phe N-terminus. In Saccharomyces the complex includes Mak3p, Mak10p, and Mak31p.","definition_xrefs":["PMID:12890471"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal protein acetyltransferase complex","termid":"GO:0031414"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03215":null,"SJAG_04131":null,"SJAG_06449":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"NatC complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"N-terminal acetyltransferase C complex","type":"exact"}],"termid":"GO:0031417","terms_by_termid":{"GO:0031417":null}}


id: GO:0032586
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a protein storage vacuole.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plant-type vacuole membrane","termid":"GO:0009705"},{"relation_name":"part_of","term_name":"protein storage vacuole","termid":"GO:0000326"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005773"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005773","GO:0005575"],"is_obsolete":false,"name":"protein storage vacuole membrane","termid":"GO:0032586"}


id: PBO:0047828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FOXP1 antisense RNA 1","termid":"PBO:0047828"}


id: GO:0042284
data:
  {"annotated_genes":["SJAG_01057","SJAG_05311"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105737,108562],"is_not":false,"summary":null,"term":"GO:0042284"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a dihydroceramide + 2 ferrocytochrome b5 + O2 + 2 H+ -> a sphingosine ceramide (aka (4E)-sphing-4-enine ceramide) + 2 ferricytochrome b5 + 2 H2O.","definition_xrefs":["PMID:12417141","RHEA:46544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01057":null,"SJAG_05311":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"sphingolipid delta-4 desaturase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-428259","EC:1.14.19.17"],"synonyms":[{"name":"delta-4 sphingolipid desaturase activity","type":"exact"}],"termid":"GO:0042284","terms_by_termid":{"GO:0042284":null}}


id: PBO:0088667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cohesin loading factor (adherin) Mis4/Scc2","termid":"PBO:0088667"}


id: PBO:0063763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyhomeotic homolog 3","termid":"PBO:0063763"}


id: FYECO:0000146
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in defined medium containing trehalose, salts and water. May be supplemented with a set of amino acids as per the auxotrophic requirements of the strain.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trehalose MM","synonyms":[{"name":"trehalose minimal medium","type":"exact"}],"termid":"FYECO:0000146"}


id: PBO:0072390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS27A pseudogene 16","termid":"PBO:0072390"}


id: PBO:0067328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 419, pseudogene","termid":"PBO:0067328"}


id: FYPO:0004434
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to 4-amino-1-methyl-1H-imidazole-5-carboselenoamide. Cells stop growing (and may die) at a concentration of 4-amino-1-methyl-1H-imidazole-5-carboselenoamide that allows wild type cells to grow.","definition_xrefs":["PMID:18204818","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0005447","FYPO:0002683","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to 4-amino-1-methyl-1H-imidazole-5-carboselenoamide","synonyms":[{"name":"hypersensitive to 4-amino-1-methyl-1H-imidazole-5-carboselenoamide","type":"exact"},{"name":"sensitive to 4-amino-1-methyl-1H-imidazole-5-carboselenoamide during mitotic cell cycle","type":"related"},{"name":"sensitive to 4-amino-1-methyl-1H-imidazole-5-carboselenoamide during vegetative growth","type":"exact"}],"termid":"FYPO:0004434"}


id: PBO:0067619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 791, pseudogene","termid":"PBO:0067619"}


id: PR:P40899
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- isp3 gene.","definition_xrefs":["UniProtKB:P40899","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sexual differentiation process protein isp3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F8.05","synonyms":[{"name":"Spom972h-isp3","type":"exact"},{"name":"meiotic expression up-regulated protein 4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P40899"}


id: PR:Q9C0V5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBPB7E8.01 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9C0V5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein PB7E8.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPB7E8.01","synonyms":[{"name":"Spom972h-SPBPB7E8.01","type":"exact"}],"termid":"PR:Q9C0V5"}


id: GO:0061321
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a garland nephrocyte. A garland nephrocyte is an insect renal cell that filters hemolymph and forms a ring with other garland nephrocytes around the esophagus. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.","definition_xrefs":["PMID:19783135","GOC:sart","CL:0000486","GOC:dph","GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephrocyte differentiation","termid":"GO:0061319"},{"relation_name":"part_of","term_name":"embryonic development via the syncytial blastoderm","termid":"GO:0001700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"garland nephrocyte differentiation","secondary_identifiers":["GO:0007514"],"synonyms":[{"name":"garland cell differentiation","type":"exact"}],"termid":"GO:0061321"}


id: PBO:0085475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Probable Hsp40p co-chaperone; has a DnaJ-like domain and appears to be involved in ER-associated degradation of misfolded proteins containing a tightly folded cytoplasmic domain; inhibits replication of Brome mosaic virus in S. cerevisiae","termid":"PBO:0085475"}


id: PBO:0050602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HSD11B1 antisense RNA 1","termid":"PBO:0050602"}


id: PBO:0013764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy protein Atg14","termid":"PBO:0013764"}


id: PBO:0066605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ras homolog family member T2","termid":"PBO:0066605"}


id: GO:0015652
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: quaternary ammonium group(out) + H+(out) = quaternary ammonium group(in) + H+(in).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"},{"relation_name":"is_a","term_name":"quaternary ammonium group transmembrane transporter activity","termid":"GO:0015651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"quaternary ammonium group:proton symporter activity","synonyms":[{"name":"quaternary ammonium group:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015652"}


id: GO:0075168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its protein kinase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of protein kinase-mediated signal transduction in response to host (obsolete GO:0075168)","synonyms":[{"name":"regulation of symbiont protein kinase-mediated signal transduction in response to host","type":"exact"}],"termid":"GO:0075168"}


id: GO:0033883
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pyridoxal 5'-phosphate + H2O = pyridoxal + phosphate.","definition_xrefs":["EC:3.1.3.74"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016788","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"pyridoxal phosphatase activity","secondary_identifiers":["MetaCyc:3.1.3.74-RXN","RHEA:20533"],"synonyms":[{"name":"PLP phosphatase activity","type":"related"},{"name":"PNP phosphatase activity","type":"related"},{"name":"pyridoxal-5'-phosphate phosphohydrolase activity","type":"related"},{"name":"vitamin B6 (pyridoxine) phosphatase activity","type":"broad"},{"name":"vitamin B6-phosphate phosphatase activity","type":"broad"}],"termid":"GO:0033883"}


id: PBO:0084755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial matrix iron chaperone; oxidizes and stores iron; interacts with Isu1p to promote Fe-S cluster assembly; mutation results in multiple Fe/S-dependent enzyme deficiencies; human frataxin homolog FXN is mutated in Friedrich's ataxia; human FTL gene can complement yeast yfh1 null mutant","termid":"PBO:0084755"}


id: GO:0140711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of a Frizzled Nuclear Import pathway.","definition_xrefs":["PMID:22579286","PMID:22510459"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of Frizzled Nuclear Import pathway","termid":"GO:0140710"},{"relation_name":"is_a","term_name":"positive regulation of non-canonical Wnt signaling pathway","termid":"GO:2000052"},{"relation_name":"positively_regulates","term_name":"Frizzled Nuclear Import pathway","termid":"GO:0140709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of Frizzled Nuclear Import pathway","synonyms":[{"name":"positive regulation of FNI","type":"broad"},{"name":"positive regulation of Frizzled Nuclear Import Wnt Pathway","type":"exact"}],"termid":"GO:0140711"}


id: GO:0032617
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The appearance of interleukin-14 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete interleukin-14 production (obsolete GO:0032617)","synonyms":[{"name":"IL-14 production","type":"exact"},{"name":"interleukin-14 biosynthetic process","type":"narrow"},{"name":"interleukin-14 secretion","type":"narrow"}],"termid":"GO:0032617"}


id: GO:0018529
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: nitrilotriacetate + FMNH2 + O2 = aminodiacetate + FMN + glyoxylate + H2O.","definition_xrefs":["RHEA:31359"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"nitrilotriacetate monooxygenase activity","secondary_identifiers":["MetaCyc:RXN-9508","EC:1.14.14.10","UM-BBD_reactionID:r0587","KEGG_REACTION:R09798"],"termid":"GO:0018529"}


id: FYECO:0000305
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Cells or samples were exposed to ionizing radiation.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping experimental environment","termid":"FYECO:0000132"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ionizing radiation","synonyms":[{"name":"gamma irradiation","type":"narrow"},{"name":"gamma radiation","type":"narrow"}],"termid":"FYECO:0000305"}


id: GO:0015389
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: (pyrimidine nucleoside or adenosine)(out) + Na+(out) = (pyrimidine nucleoside or adenosine)(in) + Na+(in).","definition_xrefs":["TC:2.A.41.2.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleobase transmembrane transporter activity","termid":"GO:0005345"},{"relation_name":"is_a","term_name":"pyrimidine nucleobase transmembrane transporter activity","termid":"GO:0005350"},{"relation_name":"is_a","term_name":"nucleoside:sodium symporter activity","termid":"GO:0005415"},{"relation_name":"is_a","term_name":"nucleobase:monoatomic cation symporter activity","termid":"GO:0015391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"pyrimidine- and adenosine-specific:sodium symporter activity","synonyms":[{"name":"pyrimidine- and adenine-specific:sodium symporter activity","type":"related"}],"termid":"GO:0015389"}


id: PBO:0042274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperonin containing TCP1 subunit 8","termid":"PBO:0042274"}


id: GO:0032202
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular process that results in the aggregation, arrangement and bonding together of a set of components to form a telomere at a non-telomeric double-stranded DNA end. A telomere is a terminal region of a linear chromosome that includes telomeric DNA repeats and associated proteins.","definition_xrefs":["PMID:11902675","GOC:mah","PMID:8622671","GOC:ns"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"is_a","term_name":"telomere organization","termid":"GO:0032200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0032200"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0032200","GO:0008150"],"is_obsolete":false,"name":"telomere assembly","synonyms":[{"name":"telomere formation","type":"exact"}],"termid":"GO:0032202"}


id: PBO:0085160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleotide excision repair (NER) protein; binds damaged DNA during NER; binds DNA in an ATP-dependent manner (with Rad16p) during NER; required for repair of non-transcribed chromatin; subunit of Nucleotide Excision Repair Factor 4 (NEF4) and the Elongin-Cullin-Socs (ECS) ligase complex","termid":"PBO:0085160"}


id: GO:0048642
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of skeletal muscle tissue development.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of skeletal muscle tissue development","termid":"GO:0048641"},{"relation_name":"is_a","term_name":"negative regulation of muscle tissue development","termid":"GO:1901862"},{"relation_name":"negatively_regulates","term_name":"skeletal muscle tissue development","termid":"GO:0007519"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of skeletal muscle tissue development","synonyms":[{"name":"down regulation of skeletal muscle development","type":"exact"},{"name":"down-regulation of skeletal muscle development","type":"exact"},{"name":"downregulation of skeletal muscle development","type":"exact"},{"name":"inhibition of skeletal muscle development","type":"narrow"}],"termid":"GO:0048642"}


id: GO:0071649
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of chemokine (C-C motif) ligand 5.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of chemokine production","termid":"GO:0032642"},{"relation_name":"regulates","term_name":"chemokine (C-C motif) ligand 5 production","termid":"GO:0071609"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of chemokine (C-C motif) ligand 5 production","synonyms":[{"name":"regulation of CCL5 production","type":"exact"},{"name":"regulation of RANTES production","type":"exact"},{"name":"regulation of Regulated upon Activation, Normal T-cell Expressed, and Secreted production","type":"exact"}],"termid":"GO:0071649"}


id: GO:0009759
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosinolate biosynthetic process","termid":"GO:0019761"},{"relation_name":"is_a","term_name":"indole glucosinolate metabolic process","termid":"GO:0042343"},{"relation_name":"is_a","term_name":"indole-containing compound biosynthetic process","termid":"GO:0042435"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006790"],"is_obsolete":false,"name":"indole glucosinolate biosynthetic process","synonyms":[{"name":"indole glucosinolate anabolism","type":"exact"},{"name":"indole glucosinolate biosynthesis","type":"exact"},{"name":"indole glucosinolate formation","type":"exact"},{"name":"indole glucosinolate synthesis","type":"exact"}],"termid":"GO:0009759"}


id: PBO:0029162
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_phosphorylation_during_nitrogen_starvation","termid":"PBO:0029162"}


id: PBO:0060452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetyl-alpha-glucosaminidase","termid":"PBO:0060452"}


id: PBO:0002147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AT hook protein","termid":"PBO:0002147"}


id: PBO:0084726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial inner membrane protein; role in mitophagy is disputed; implicated in cell wall biogenesis, the oxidative stress response, life span during starvation, and cell death; SUN family member; UTH1 has a paralog, NCA3, that arose from the whole genome duplication","termid":"PBO:0084726"}


id: SO:0000204
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region at the 5' end of a mature transcript (preceding the initiation codon) that is not translated into a protein.","direct_ancestors":[{"relation_name":"is_a","term_name":"UTR","termid":"SO:0000203"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_prime_UTR","secondary_identifiers":["http://en.wikipedia.org/wiki/5'_UTR"],"synonyms":[{"name":"5' UTR","type":"exact"},{"name":"INSDC_feature:5'UTR","type":"exact"},{"name":"five prime UTR","type":"exact"},{"name":"five_prime_untranslated_region","type":"exact"}],"termid":"SO:0000204"}


id: SO:1001270
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1001270 stop_codon_redefinition_as_pyrrolysine (obsolete SO:1001270)","termid":"SO:1001270"}


id: PBO:0077340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 79","termid":"PBO:0077340"}


id: GO:0036392
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of chemokine (C-C motif) ligand 20 (CCL20) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:jc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"chemokine (C-C motif) ligand 20 production","synonyms":[{"name":"C-C motif chemokine 20 production","type":"exact"},{"name":"CCL-20 production","type":"exact"},{"name":"CCL20 production","type":"exact"}],"termid":"GO:0036392"}


id: GO:1900467
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of cellular potassium ion homeostasis.","definition_xrefs":["PMID:20412803","GOC:TermGenie","GOC:dgf"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cellular potassium ion homeostasis (obsolete GO:1900467)","synonyms":[{"name":"regulation of cellular potassium ion homeostasis","type":"exact"}],"termid":"GO:1900467"}


id: PBO:0030984
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_methylation","termid":"PBO:0030984"}


id: FYPO:0003553
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of an RNA catabolic process is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"decreased RNA level","termid":"FYPO:0000826"},{"relation_name":"is_a","term_name":"abnormal RNA catabolic process","termid":"FYPO:0003551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased RNA catabolic process","synonyms":[{"name":"increased RNA breakdown","type":"exact"},{"name":"increased RNA catabolism","type":"exact"},{"name":"increased RNA degradation","type":"exact"}],"termid":"FYPO:0003553"}


id: PBO:0050654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein 90 alpha family class B member 4, pseudogene","termid":"PBO:0050654"}


id: PBO:0039073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-acylglycerol-3-phosphate O-acyltransferase 1","termid":"PBO:0039073"}


id: GO:0007625
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The specific behavior of an organism relating to grooming, cleaning and brushing to remove dirt and parasites.","definition_xrefs":["GOC:jl","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"behavior","termid":"GO:0007610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"grooming behavior","synonyms":[{"name":"grooming behaviour","type":"exact"}],"termid":"GO:0007625"}


id: RO:0002163
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A is spatially_disjoint_from B if and only if they have no parts in common","direct_ancestors":[{"relation_name":"is_a","term_name":"mereotopologically_related_to","termid":"RO:0002323"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spatially_disjoint_from","termid":"RO:0002163"}


id: PBO:0002400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypoxia induced family protein","termid":"PBO:0002400"}


id: PBO:0075988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"starch binding domain 1","termid":"PBO:0075988"}


id: GO:0043804
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-formimidoylglycine => H2O + imidazol-4-one.","definition_xrefs":["RHEA:24935","PMID:27286964"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides","termid":"GO:0016812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016810","GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"imidazolone hydrolase activity","termid":"GO:0043804"}


id: PBO:0058893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 11400","termid":"PBO:0058893"}


id: SO:0000124
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Expressed in relatively constant amounts without regard to cellular environmental conditions such as the concentration of a particular substrate.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcriptionally_regulated","termid":"SO:0000123"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally_constitutive","synonyms":[{"name":"transcriptionally constitutive","type":"exact"}],"termid":"SO:0000124"}


id: GO:1901057
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of trimethylenediamine.","definition_xrefs":["UniPathway:UPA00010","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyamine biosynthetic process","termid":"GO:0006596"},{"relation_name":"is_a","term_name":"trimethylenediamine metabolic process","termid":"GO:1901055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"trimethylenediamine biosynthetic process","synonyms":[{"name":"trimethylenediamine anabolism","type":"exact"},{"name":"trimethylenediamine biosynthesis","type":"exact"},{"name":"trimethylenediamine formation","type":"exact"},{"name":"trimethylenediamine synthesis","type":"exact"}],"termid":"GO:1901057"}


id: GO:0042990
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription factor import into nucleus (obsolete GO:0042990)","synonyms":[{"name":"regulation of transcription factor import into cell nucleus","type":"exact"},{"name":"regulation of transcription factor transport from cytoplasm to nucleus","type":"exact"},{"name":"regulation of transcription factor-nucleus import","type":"exact"}],"termid":"GO:0042990"}


id: GO:0050630
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + isoeugenol = S-adenosyl-L-homocysteine + isomethyleugenol.","definition_xrefs":["MetaCyc:2.1.1.146-RXN","EC:2.1.1.146"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-methyltransferase activity","termid":"GO:0008171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016741","GO:0003674"],"is_obsolete":false,"name":"(iso)eugenol O-methyltransferase activity","secondary_identifiers":["RHEA:17081"],"synonyms":[{"name":"S-adenosyl-L-methionine:isoeugenol O-methyltransferase activity","type":"related"},{"name":"isoeugenol O-methyltransferase activity","type":"exact"}],"termid":"GO:0050630"}


id: GO:0140774
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N6-octadecanoyl-L-lysyl-[protein] + NAD+ + H2O = octadecanoyl-ADP-D-ribose + L-lysyl-[protein] + nicotinamide.","definition_xrefs":["RHEA:70563","PMID:23552949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016746"],"is_obsolete":false,"name":"NAD-dependent protein depalmitoylase activity","termid":"GO:0140774"}


id: GO:0030478
data:
  {"annotated_genes":["SJAG_04624"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[85464],"is_not":false,"summary":null,"term":"GO:0030478"}]},"cv_name":"cellular_component","definition":"Polarized accumulation of cytoskeletal proteins (including F-actin) and regulatory proteins in a cell. An example of this is the actin cap found in Saccharomyces cerevisiae.","definition_xrefs":["GOC:mah","PMID:21494665"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cortical actin cytoskeleton","termid":"GO:0030864"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04624":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"part_of","termid":"GO:0005938"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0015629","GO:0005575","GO:0005938"],"is_obsolete":false,"name":"actin cap","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0000143"],"termid":"GO:0030478","terms_by_termid":{"GO:0030478":null}}


id: PBO:0040190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"argininosuccinate synthetase 1 pseudogene 3","termid":"PBO:0040190"}


id: FYPO:0003818
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which 5'-3' DNA helicase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal 5'-3' DNA helicase activity","termid":"FYPO:0003817"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000652","FYPO:0001985","FYPO:0000707","FYPO:0000654","FYPO:0000002","FYPO:0000641","FYPO:0005447"],"is_obsolete":false,"name":"abolished 5'-3' DNA helicase activity","synonyms":[{"name":"5'-3' DNA helicase activity abolished","type":"exact"}],"termid":"FYPO:0003818"}


id: PBO:0078109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trafficking regulator of GLUT4 (SLC2A4) 1","termid":"PBO:0078109"}


id: GO:2000456
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of T-helper 17 cell extravasation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of CD8-positive, alpha-beta T cell extravasation","termid":"GO:2000450"},{"relation_name":"is_a","term_name":"regulation of T-helper 17 cell extravasation","termid":"GO:2000455"},{"relation_name":"negatively_regulates","term_name":"T-helper 17 cell extravasation","termid":"GO:0035699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of T-helper 17 cell extravasation","termid":"GO:2000456"}


id: PBO:0082975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic thioredoxin isoenzyme; part of the thioredoxin system that protects cells from oxidative and reductive stress; subunit of the LMA1 complex, with Pbi2p, that promotes vacuole inheritance; cofactor for Tsa1p; required for ER-Golgi transport; facilitates mitochondrial import of small Tims (Tim9p, Tim10p, Tim13p) by maintaining them in reduced form along with Trx1p; component of a signal transduction redox relay in a light sensing pathway; abundance increases under DNA replication stress","termid":"PBO:0082975"}


id: GO:0038091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by vascular endothelial growth factor (VEGF) binding to a platelet-derived growth factor receptor (PDGFR) on the surface of a cell, which activates or increases the frequency, rate or extent of cell proliferation.","definition_xrefs":["PMID:17470632","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"is_a","term_name":"VEGF-activated platelet-derived growth factor receptor signaling pathway","termid":"GO:0038086"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signaling pathway","synonyms":[{"name":"VEGF-A-induced cell proliferation","type":"narrow"},{"name":"positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signalling pathway","type":"exact"},{"name":"positive regulation of cell proliferation by VEGF/PDGFR signaling pathway","type":"exact"}],"termid":"GO:0038091"}


id: GO:0009850
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving auxins, a group of plant hormones that regulate aspects of plant growth.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hormone metabolic process","termid":"GO:0042445"},{"relation_name":"is_a","term_name":"cellular metabolic process","termid":"GO:0044237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"auxin metabolic process","synonyms":[{"name":"auxin metabolism","type":"exact"}],"termid":"GO:0009850"}


id: PBO:0081761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF691 divergent transcript","termid":"PBO:0081761"}


id: PBO:0085196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Orotidine-5'-phosphate (OMP) decarboxylase; catalyzes the sixth enzymatic step in the de novo biosynthesis of pyrimidines, converting OMP into uridine monophosphate (UMP); converts 5-FOA into 5-fluorouracil, a toxic compound","termid":"PBO:0085196"}


id: FYPO:0000164
data:
  {"alleles_by_uniquename":{"SJAG_02252:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02252","name":"ace2delta","uniquename":"SJAG_02252:allele-1"},"SJAG_03143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03143","name":"sep1delta","uniquename":"SJAG_03143:allele-1"},"SJAG_03444:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03444","name":"agn1delta","uniquename":"SJAG_03444:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115407],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001971"},{"annotations":[115410,115409],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0006557"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell separation after cytokinesis is abnormal. Cell separation is the process of physically separating progeny cells after cytokinesis is complete, and involves enzymatic digestion of septum components.","definition_xrefs":["GO:0000920","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell division","termid":"FYPO:0000186"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02252":null,"SJAG_03143":null,"SJAG_03444":null},"genotype_count":3,"genotypes_by_uniquename":{"ace2delta":{"display_name":"ace2delta","display_uniquename":"ace2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02252:allele-1","expression":"Null"}]}]},"agn1delta":{"display_name":"agn1delta","display_uniquename":"agn1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03444:allele-1","expression":"Null"}]}]},"sep1delta":{"display_name":"sep1delta","display_uniquename":"sep1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03143:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal cell separation after cytokinesis","references_by_uniquename":{"PMID:22300943":null,"PMID:24699070":null},"single_locus_annotated_genes":["SJAG_02252","SJAG_03143","SJAG_03444"],"single_locus_genotype_uniquenames":["agn1delta","ace2delta","sep1delta"],"synonyms":[{"name":"abnormal cell separation after cytokinesis during mitotic cell cycle","type":"related"},{"name":"abnormal cell separation after cytokinesis during vegetative growth","type":"exact"},{"name":"abnormal mitotic cytokinetic cell separation","type":"exact"},{"name":"abnormal septum digestion after cytokinesis","type":"exact"}],"termid":"FYPO:0000164","terms_by_termid":{"FYECO:0000137":null,"FYPO:0001971":null,"FYPO:0006557":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: MOD:00512
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod N-linked glycosylation, Hex3","definition_xrefs":["PubMed:1694179","Unimod:144","PubMed:111247","PubMed:5490222","RESID:AA0151#var"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N4-glycosyl-L-asparagine","termid":"MOD:00160"},{"relation_name":"is_a","term_name":"complex glycosylation","termid":"MOD:00725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"Hex3 N4-glycosylated asparagine","synonyms":[{"name":"Hex(3)","type":"related"},{"name":"Hex3","type":"related"}],"termid":"MOD:00512"}


id: GO:0090591
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + N-acetyl-mannosamine(out) = protein histidine +N-acetyl- mannosamine-6-phosphate(in).","definition_xrefs":["PMID:9864311"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-N(PI)-phosphohistidine-sugar phosphotransferase activity","termid":"GO:0008982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"protein-N(PI)-phosphohistidine-N-acetyl-mannosamine phosphotransferase system transporter activity","termid":"GO:0090591"}


id: PBO:0004042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tor complex Tor2 interacting protein 1","termid":"PBO:0004042"}


id: PBO:0004497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial protein Nca2 (predicted)","termid":"PBO:0004497"}


id: PBO:0082209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha-1,3-mannosyltransferase; integral membrane glycoprotein of the Golgi complex, required for addition of alpha1,3-mannose linkages to N-linked and O-linked oligosaccharides, one of five S. cerevisiae proteins of the MNN1 family","termid":"PBO:0082209"}


id: PBO:0038766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ACTR3 pseudogene 3","termid":"PBO:0038766"}


id: GO:1903724
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of centriole elongation.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:als","PMID:20616062"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of centriole replication","termid":"GO:0046601"},{"relation_name":"is_a","term_name":"regulation of centriole elongation","termid":"GO:1903722"},{"relation_name":"positively_regulates","term_name":"centriole elongation","termid":"GO:0061511"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007010","GO:0044085","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"positive regulation of centriole elongation","synonyms":[{"name":"activation of centriole elongation","type":"narrow"},{"name":"up regulation of centriole elongation","type":"exact"},{"name":"up-regulation of centriole elongation","type":"exact"},{"name":"upregulation of centriole elongation","type":"exact"}],"termid":"GO:1903724"}


id: PBO:0004423
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulates ace2 target genes","termid":"PBO:0004423"}


id: GO:1990217
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a symbiont stops, prevents, or reduces the frequency, rate or extent of phytoalexin production in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:21402357"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont defense to host-produced phytoalexin","termid":"GO:0052165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"suppression by symbiont of host phytoalexin production","synonyms":[{"name":"negative regulation by symbiont of host phytoalexin production","type":"exact"}],"termid":"GO:1990217"}


id: PBO:0056772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase 22, Kin17 lysine","termid":"PBO:0056772"}


id: GO:0008087
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that forms a transmembrane channel through which calcium ions may cross a cell membrane in response to changes in membrane potential generated in response to a light stimulus.","definition_xrefs":["PMID:9223679","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated calcium channel complex","termid":"GO:0005891"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"light-activated voltage-gated calcium channel complex","synonyms":[{"name":"light-activated voltage gated calcium channel complex","type":"exact"},{"name":"light-activated voltage-dependent calcium channel complex","type":"exact"},{"name":"light-activated voltage-sensitive calcium channel complex","type":"exact"}],"termid":"GO:0008087"}


id: PR:Q10341
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cys2 gene.","definition_xrefs":["UniProtKB:Q10341","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine-O-acetyltransferase cys2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC106.17c","synonyms":[{"name":"Spom972h-cys2","type":"exact"}],"termid":"PR:Q10341"}


id: GO:0045522
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an interleukin-26 receptor.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"interleukin-26 receptor binding","synonyms":[{"name":"IL-26","type":"narrow"},{"name":"interleukin-26 receptor ligand","type":"narrow"}],"termid":"GO:0045522"}


id: PBO:0069644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 921, pseudogene","termid":"PBO:0069644"}


id: PBO:0042636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain protein Y-linked 11 pseudogene","termid":"PBO:0042636"}


id: GO:0015171
data:
  {"annotated_genes":["SJAG_00522","SJAG_01998","SJAG_03256","SJAG_00015","SJAG_04718","SJAG_03829","SJAG_03827","SJAG_04787","SJAG_01770","SJAG_01994","SJAG_00149","SJAG_04903","SJAG_02113","SJAG_02133","SJAG_01096","SJAG_04296","SJAG_04984","SJAG_03899","SJAG_04135","SJAG_02029","SJAG_03400","SJAG_02941","SJAG_04957","SJAG_02946","SJAG_00626","SJAG_05342","SJAG_00051","SJAG_02947","SJAG_00019","SJAG_00877","SJAG_04295","SJAG_02150","SJAG_04588","SJAG_04637","SJAG_02062","SJAG_02955","SJAG_04725","SJAG_02144","SJAG_00543","SJAG_06598"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74519,75577,76458,83684,83685,83686,83687,83688,83689,83690,83691,83728,83729,83730,83731,85807,96074,99580,99815,102059,105453,105460,106610,109720,114241,114242,114243,114244,114245,114246,114247,114248,114343,114438,114986],"is_not":false,"summary":null,"term":"GO:0015171"},{"annotations":[90667,91770,86491],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015174"},{"annotations":[109714,114990],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033229"},{"annotations":[94289,96291],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015187"},{"annotations":[92094],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034639"},{"annotations":[92095],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015179"},{"annotations":[99889,96413,93430],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061459"},{"annotations":[106045,98850],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015182"},{"annotations":[92628],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015183"},{"annotations":[94290,99890,92629],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005313"},{"annotations":[93431,99891],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005290"},{"annotations":[106046,98851],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015188"},{"annotations":[96414,98852,99892,93432,106047],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015189"},{"annotations":[103932],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000064"},{"annotations":[97264,96405],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015193"},{"annotations":[86708,99893],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015194"},{"annotations":[99894],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005302"}]},"cv_name":"molecular_function","definition":"Enables the transfer of amino acids from one side of a membrane to the other. 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id: GO:0021617
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the glossopharyngeal nerve. This process pertains to the physical shaping of a rudimentary structure. Various sensory and motor branches of the glossopharyngeal nerve supply nerve connections to the pharynx and back of the tongue. The branchial motor component contains motor fibers that innervate muscles that elevate the pharynx and larynx, and the tympanic branch supplies parasympathetic fibers to the otic ganglion.","definition_xrefs":["ISBN:0838580343","GO_REF:0000021","GOC:dph","GOC:jid","GOC:cls","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve structural organization","termid":"GO:0021604"},{"relation_name":"part_of","term_name":"glossopharyngeal nerve morphogenesis","termid":"GO:0021615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glossopharyngeal nerve structural organization","synonyms":[{"name":"CN IX structural organization","type":"related"},{"name":"glossopharyngeal nerve structural organisation","type":"exact"}],"termid":"GO:0021617"}


id: PATO:0001586
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A variability quality inhering in a bearer by virtue of whether the bearer exhibits rate variation or change.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"variability","termid":"PATO:0001303"},{"relation_name":"towards","term_name":"rate","termid":"PATO:0000161"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"variability of rate","termid":"PATO:0001586"}


id: GO:0039673
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process by which a virus avoids the effects mediated by the host organism's dendritic cells.","definition_xrefs":["UniProtKB-KW:KW-1118","GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"virus-mediated perturbation of host defense response","termid":"GO:0019049"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"evasion by virus of host dendritic cell activity","synonyms":[{"name":"evasion by virus of host dendritic cell response","type":"exact"},{"name":"impairing dendritic cell function by virus","type":"exact"},{"name":"modulation of host dendritic cell activity by virus","type":"broad"}],"termid":"GO:0039673"}


id: GO:0002604
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of dendritic cell antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation","termid":"GO:0002577"},{"relation_name":"regulates","term_name":"dendritic cell antigen processing and presentation","termid":"GO:0002468"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of dendritic cell antigen processing and presentation","termid":"GO:0002604"}


id: FYPO:0004730
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein that is not normally found at the lateral cell cortex is observed there. The lateral cell cortex is the region directly beneath the plasma membrane of the lateral portion of the cell.","definition_xrefs":["PomBase:mah","GO:0097575"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein mislocalized to cytoplasm during vegetative growth","termid":"FYPO:0000783"},{"relation_name":"output_of","term_name":"abnormal protein localization to lateral cell cortex","termid":"FYPO:0007869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"protein mislocalized to lateral cell cortex","synonyms":[{"name":"ectopic protein localization to lateral cell cortex","type":"exact"},{"name":"protein mislocalised to lateral cell cortex","type":"exact"},{"name":"protein mislocalised to lateral cell cortex during vegetative growth","type":"exact"},{"name":"protein mislocalized to cell side during vegetative growth","type":"related"},{"name":"protein mislocalized to lateral cell cortex during mitotic cell cycle","type":"related"},{"name":"protein mislocalized to lateral cell cortex during vegetative growth","type":"exact"},{"name":"protein mislocalized to lateral cortex","type":"exact"}],"termid":"FYPO:0004730"}


id: GO:0032071
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of endodeoxyribonuclease activity, the hydrolysis of ester linkages within deoxyribonucleic acid by creating internal breaks.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of deoxyribonuclease activity","termid":"GO:0032070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"regulation of endodeoxyribonuclease activity","synonyms":[{"name":"endodeoxyribonuclease regulator","type":"related"}],"termid":"GO:0032071"}


id: PBO:0070542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 8","termid":"PBO:0070542"}


id: PBO:0084442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Maltase (alpha-D-glucosidase); inducible protein involved in maltose catabolism; encoded in the MAL3 complex locus; functional in genomic reference strain S288C; hydrolyzes the disaccharides maltose, turanose, maltotriose, and sucrose","termid":"PBO:0084442"}


id: PBO:0058110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4325","termid":"PBO:0058110"}


id: SO:0000316
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA_region","termid":"SO:0000836"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDS","synonyms":[{"name":"INSDC_feature:CDS","type":"exact"},{"name":"coding sequence","type":"exact"},{"name":"coding_sequence","type":"exact"}],"termid":"SO:0000316"}


id: PBO:0049008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gephyrin","termid":"PBO:0049008"}


id: PBO:0066197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBM15 antisense RNA 1","termid":"PBO:0066197"}


id: GO:0046800
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the severity of viral infection and subsequent disease.","definition_xrefs":["PMID:10587354"],"gene_count":0,"genotype_count":0,"name":"obsolete enhancement of virulence (obsolete GO:0046800)","synonyms":[{"name":"enhancement of virulence","type":"exact"}],"termid":"GO:0046800"}


id: GO:0021586
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for the pons to attain its fully functional state. The pons lies above the medulla and next to the cerebellum. The pons conveys information about movement from the cerebral hemisphere to the cerebellum.","definition_xrefs":["GOC:jid","GOC:cls","GOC:dph","GO_REF:0000021","GOC:dgh","ISBN:0838580343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure maturation","termid":"GO:0071695"},{"relation_name":"part_of","term_name":"pons development","termid":"GO:0021548"},{"relation_name":"part_of","term_name":"hindbrain maturation","termid":"GO:0021578"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pons maturation","termid":"GO:0021586"}


id: GO:0000156
data:
  {"annotated_genes":["SJAG_00318","SJAG_02472"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[68526,108504],"is_not":false,"summary":null,"term":"GO:0000156"}]},"cv_name":"molecular_function","definition":"Responds to a phosphorelay sensor to initiate a change in cell state or activity. The activity of the response regulator is regulated by transfer of a phosphate from a histidine residue in the sensor, to an aspartate residue in the response regulator. Many but not all response regulators act as transcriptional regulators to elicit a response.","definition_xrefs":["GOC:bf","PMID:10966457","PMID:11842140"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular transducer activity","termid":"GO:0060089"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00318":null,"SJAG_02472":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"phosphorelay response regulator activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"synonyms":[{"name":"two-component response regulator activity","type":"narrow"}],"termid":"GO:0000156","terms_by_termid":{"GO:0000156":null}}


id: PBO:0062068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 3 subfamily B member 1 pseudogene","termid":"PBO:0062068"}


id: SO:0000788
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000788 cloned (obsolete SO:0000788)","termid":"SO:0000788"}


id: PBO:0086093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein phosphotyrosine phosphatase of unknown cellular role; activated by adenine","termid":"PBO:0086093"}


id: PBO:0039563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 55","termid":"PBO:0039563"}


id: PBO:0089461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation elongation and termination factor eIF5A (predicted)","termid":"PBO:0089461"}


id: GO:1904380
data:
  {"annotated_genes":["SJAG_01858"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89611],"is_not":false,"summary":null,"term":"GO:1904380"}]},"cv_name":"biological_process","definition":"Any protein alpha-1,2-demannosylation that takes place in the endoplasmic reticulum quality control compartment (ERQC).","definition_xrefs":["PMID:24519966","GO_REF:0000062","GOC:bf","GOC:PARL","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein alpha-1,2-demannosylation","termid":"GO:0036508"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01858":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endoplasmic reticulum mannose trimming","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ER mannose trimming","type":"exact"},{"name":"ER protein alpha-1,2-demannosylation","type":"exact"},{"name":"glycoprotein mannose trimming in ER quality control compartment","type":"related"},{"name":"glycoprotein mannose trimming in ER-derived quality control compartment","type":"related"},{"name":"glycoprotein mannose trimming in ERQC","type":"related"},{"name":"glycoprotein mannose trimming in endoplasmic reticulum quality control compartment","type":"related"},{"name":"protein alpha-1,2-demannosylation in ER","type":"exact"},{"name":"protein alpha-1,2-demannosylation in ER quality control compartment","type":"exact"},{"name":"protein alpha-1,2-demannosylation in ER-derived quality control compartment","type":"related"},{"name":"protein alpha-1,2-demannosylation in ERQC","type":"exact"},{"name":"protein alpha-1,2-demannosylation in endoplasmic reticulum","type":"exact"},{"name":"protein alpha-1,2-demannosylation in endoplasmic reticulum quality control compartment","type":"exact"}],"termid":"GO:1904380","terms_by_termid":{"GO:1904380":null}}


id: GO:0031296
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the B cell receptor to augment B cell activation.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphocyte costimulation","termid":"GO:0031294"},{"relation_name":"is_a","term_name":"positive regulation of B cell activation","termid":"GO:0050871"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"B cell costimulation","synonyms":[{"name":"B cell co-stimulation","type":"exact"},{"name":"B lymphocyte co-stimulation","type":"exact"},{"name":"B lymphocyte costimulation","type":"exact"},{"name":"B-cell co-stimulation","type":"exact"},{"name":"B-cell costimulation","type":"exact"},{"name":"B-lymphocyte co-stimulation","type":"exact"},{"name":"B-lymphocyte costimulation","type":"exact"}],"termid":"GO:0031296"}


id: GO:0007210
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a serotonin receptor binding to one of its physiological ligands.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal transduction","termid":"GO:0007165"},{"relation_name":"part_of","term_name":"cellular response to dopamine","termid":"GO:1903351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"serotonin receptor signaling pathway","synonyms":[{"name":"serotonin receptor signalling pathway","type":"exact"}],"termid":"GO:0007210"}


id: FYPO:0001901
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cytoplasmic mRNA processing bodies (P-bodies) are smaller than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"is_a","term_name":"small P-bodies","termid":"FYPO:0001900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"small P-bodies during vegetative growth","synonyms":[{"name":"decreased P-body formation during vegetative growth","type":"related"},{"name":"small P bodies during vegetative growth","type":"exact"},{"name":"small P-bodies during mitotic cell cycle","type":"related"},{"name":"small P-body during vegetative growth","type":"exact"},{"name":"small cytoplasmic mRNA processing bodies during vegetative growth","type":"exact"}],"termid":"FYPO:0001901"}


id: GO:0090342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the rate, frequency, or extent of cell aging. Cell aging is the progression of the cell from its inception to the end of its lifespan.","definition_xrefs":["GOC:tb","GOC:BHF","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cell aging (obsolete GO:0090342)","termid":"GO:0090342"}


id: PBO:0085370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphotyrosine-specific protein phosphatase; dephosphorylates a broad range of substrates in vivo, including Fpr3p; localized to the cytoplasm and the mitochondria; proposed to be a negative regulator of filamentation","termid":"PBO:0085370"}


id: GO:0002277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The change in morphology and behavior of a myeloid dendritic cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myeloid dendritic cell activation","termid":"GO:0001773"},{"relation_name":"is_a","term_name":"myeloid cell activation involved in immune response","termid":"GO:0002275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myeloid dendritic cell activation involved in immune response","synonyms":[{"name":"myeloid dendritic cell activation during immune response","type":"related"}],"termid":"GO:0002277"}


id: PBO:0080748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X antigen family member 3","termid":"PBO:0080748"}


id: PR:Q10415
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mitochondrial intermediate peptidase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11804:SF5","PRO:DNx","OMA:SCHPO00249"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial intermediate peptidase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F3.10c","secondary_identifiers":["UniProtKB:Q10415"],"synonyms":[{"name":"MIP (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-MIPEP","type":"exact"},{"name":"octapeptidyl aminopeptidase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10415"}


id: GO:0015987
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers GTP synthesis.","definition_xrefs":["ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"energy coupled proton transport, down electrochemical gradient","termid":"GO:0015985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"GTP synthesis coupled proton transport","termid":"GO:0015987"}


id: PBO:0063823
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PH domain and leucine rich repeat protein phosphatase 2","termid":"PBO:0063823"}


id: PBO:0066086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginyl-tRNA synthetase 2, mitochondrial","termid":"PBO:0066086"}


id: PBO:0089163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial (2Fe-2S) cluster assembly chaperone Ssc1","termid":"PBO:0089163"}


id: GO:0060854
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of the coordinated growth and sprouting of lymph vessels giving rise to the organized lymphatic system.","definition_xrefs":["GOC:tb","GOC:sdb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branching morphogenesis of an epithelial tube","termid":"GO:0048754"},{"relation_name":"part_of","term_name":"lymphangiogenesis","termid":"GO:0001946"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"branching involved in lymph vessel morphogenesis","synonyms":[{"name":"patterning of lymph vessels","type":"broad"}],"termid":"GO:0060854"}


id: FYPO:0001795
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing purvalanol A.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002060"}],"interesting_parent_ids":["FYPO:0002060","FYPO:0000003","FYPO:0002057","FYPO:0000139","FYPO:0002058","FYPO:0000257"],"is_obsolete":false,"name":"normal growth on purvalanol A","synonyms":[{"name":"normal cell population growth in presence of purvalanol A","type":"exact"},{"name":"normal cell population growth on purvalanol A","type":"exact"},{"name":"normal cellular response to purvalanol A","type":"related"},{"name":"normal vegetative cell population growth on purvalanol A","type":"exact"}],"termid":"FYPO:0001795"}


id: PATO:0000664
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000664 substance_quantity (obsolete PATO:0000664)","termid":"PATO:0000664"}


id: PBO:0111858
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ypt subfamily","termid":"PBO:0111858"}


id: PBO:0018154
data:
  {"annotation_feature_type":"gene","cv_name":"external_link","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WT overexpression expression profiling","termid":"PBO:0018154"}


id: GO:0052028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont subverts a signal transduction pathway in the host organism by initiating, promoting, or enhancing its activation. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host signal transduction pathway","termid":"GO:0052027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated activation of host signal transduction pathway","secondary_identifiers":["GO:0044502","GO:0052526"],"synonyms":[{"name":"activation by symbiont of host signal transduction pathway","type":"narrow"},{"name":"induction by symbiont of host signal transduction pathway","type":"exact"},{"name":"positive regulation by organism of signal transduction in other organism involved in symbiotic interaction","type":"broad"},{"name":"positive regulation by symbiont of host signal transduction pathway","type":"exact"},{"name":"positive regulation of signal transduction in other organism","type":"broad"},{"name":"stimulation by symbiont of host signal transduction pathway","type":"narrow"},{"name":"up regulation by symbiont of host signal transduction pathway","type":"exact"},{"name":"up-regulation by symbiont of host signal transduction pathway","type":"exact"},{"name":"upregulation by symbiont of host signal transduction pathway","type":"exact"}],"termid":"GO:0052028"}


id: PBO:0109380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 11","termid":"PBO:0109380"}


id: PBO:0086920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative zinc finger transcription factor; binds DNA in sequence-specific manner; overexpression causes a cell cycle delay or arrest","termid":"PBO:0086920"}


id: SO:0002194
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The pseudogene has arisen from a copy of the parent gene by duplication followed by accumulation of random mutation. The changes, compared to their functional homolog, include insertions, deletions, premature stop codons, frameshifts and a higher proportion of non-synonymous versus synonymous substitutions.","direct_ancestors":[{"relation_name":"is_a","term_name":"pseudogenic_rRNA","termid":"SO:0000777"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unprocessed_pseudogenic_rRNA","synonyms":[{"name":"INSDC_feature:rRNA","type":"broad"},{"name":"INSDC_qualifier:unprocessed","type":"exact"},{"name":"unprocessed pseudogenic rRNA","type":"exact"}],"termid":"SO:0002194"}


id: PBO:0066659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"receptor interacting serine/threonine kinase 1","termid":"PBO:0066659"}


id: PBO:0060585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NBPF member 22, pseudogene","termid":"PBO:0060585"}


id: GO:0140194
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of an adenylate cyclase-inhibiting adrenergic receptor signaling pathway involved in some heart process.","definition_xrefs":["GOC:rph","GOC:BHF","GOC:BHF_miRNA"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of adenylate cyclase-inhibiting adrenergic receptor signaling pathway involved in heart process (obsolete GO:0140194)","termid":"GO:0140194"}


id: GO:0043715
data:
  {"annotated_genes":["SJAG_01404"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95068],"is_not":false,"summary":null,"term":"GO:0043715"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,3-diketo-5-methylthiopentyl-1-phosphate = H+ + 2-hydroxy 3-keto-5-methylthiopentenyl-1-phosphate. 2,3-diketo-5-methylthiopentyl-1-phosphate is also known as DK-MTP-1-P, and 2-hydroxy 3-keto-5-methylthiopentenyl-1-phosphate as HK-MTPenyl-1-P.","definition_xrefs":["MetaCyc:R82-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, interconverting keto- and enol-groups","termid":"GO:0016862"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01404":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:5.3.2.5","RHEA:18769"],"synonyms":[{"name":"DK-MTP-1-P enolase activity","type":"exact"},{"name":"E-1","type":"related"},{"name":"MasA","type":"related"},{"name":"mtnW","type":"related"}],"termid":"GO:0043715","terms_by_termid":{"GO:0043715":null}}


id: PBO:0064735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 71","termid":"PBO:0064735"}


id: PBO:0081914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 883","termid":"PBO:0081914"}


id: PBO:0089894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NAD-dependent epimerase/dehydratase","termid":"PBO:0089894"}


id: PBO:0031668
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_rate_of_protein_transport","termid":"PBO:0031668"}


id: PBO:0062998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidyl arginine deiminase 4","termid":"PBO:0062998"}


id: PBO:0013097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead transcription factor Sep1","termid":"PBO:0013097"}


id: PBO:0035954
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_negative_regulation_of_protein_kinase_activity_during_mitosis","termid":"PBO:0035954"}


id: GO:2001038
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellular response to drug.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular process","termid":"GO:0050794"},{"relation_name":"is_a","term_name":"regulation of response to drug","termid":"GO:2001023"},{"relation_name":"regulates","term_name":"cellular response to xenobiotic stimulus","termid":"GO:0071466"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular response to drug","termid":"GO:2001038"}


id: PBO:0060556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurobeachin like 2","termid":"PBO:0060556"}


id: PBO:0074575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA host gene 31","termid":"PBO:0074575"}


id: FYPO:0004591
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the mitotic spindle forms with microtubules emanating from only one pole after the cell has undergone a normal mitotic nuclear division and passed through the subsequent mitotic interphase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monopolar mitotic spindle","termid":"FYPO:0000276"},{"relation_name":"is_a","term_name":"abnormal vegetative cell phenotype following normal mitosis","termid":"FYPO:0004593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000641"},{"rel_name":"output_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000641","FYPO:0000120","FYPO:0005447","FYPO:0000054","FYPO:0000631","FYPO:0001320","FYPO:0002399","FYPO:0000337"],"is_obsolete":false,"name":"monopolar mitotic spindle following normal mitosis","synonyms":[{"name":"monopolar mitotic spindle following normal mitosis and interphase","type":"exact"},{"name":"monopolar mitotic spindle following normal mitosis and passage through mitotic G1 phase","type":"exact"},{"name":"monopolar mitotic spindle following normal mitosis during vegetative growth","type":"exact"},{"name":"monopolar mitotic spindle following normal mitotic nuclear division","type":"exact"},{"name":"monopolar mitotic spindle following normal nuclear division during mitotic cell cycle","type":"exact"}],"termid":"FYPO:0004591"}


id: GO:0140859
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + medicarpin = 4'-methoxyisoflavan-2',4,7-triol.","definition_xrefs":["RHEA:35811","PMID:7805842"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"pterocarpan synthase activity","secondary_identifiers":["RHEA:35407","EC:4.2.1.139"],"synonyms":[{"name":"2',7-dihydroxy-4'-methoxyisoflavanol dehydratase activity","type":"exact"},{"name":"2'-hydroxyisoflavanol 4,2'-dehydratase activity","type":"exact"},{"name":"7,2'-dihydroxy-4'-methoxyisoflavanol dehydratase activity","type":"exact"},{"name":"medicarpan synthase activity","type":"exact"},{"name":"medicarpin synthase activity","type":"exact"}],"termid":"GO:0140859"}


id: GO:0031951
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glucocorticoids.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular catabolic process","termid":"GO:0031331"},{"relation_name":"is_a","term_name":"positive regulation of glucocorticoid metabolic process","termid":"GO:0031945"},{"relation_name":"is_a","term_name":"regulation of glucocorticoid catabolic process","termid":"GO:0031949"},{"relation_name":"is_a","term_name":"positive regulation of lipid catabolic process","termid":"GO:0050996"},{"relation_name":"positively_regulates","term_name":"glucocorticoid catabolic process","termid":"GO:0006713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"positive regulation of glucocorticoid catabolic process","synonyms":[{"name":"activation of glucocorticoid catabolic process","type":"narrow"},{"name":"stimulation of glucocorticoid catabolic process","type":"narrow"},{"name":"up regulation of glucocorticoid catabolic process","type":"exact"},{"name":"up-regulation of glucocorticoid catabolic process","type":"exact"},{"name":"upregulation of glucocorticoid catabolic process","type":"exact"}],"termid":"GO:0031951"}


id: PBO:0075600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)","termid":"PBO:0075600"}


id: PBO:0080655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WEE2 antisense RNA 1","termid":"PBO:0080655"}


id: PBO:0078655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon CTT) 8-1","termid":"PBO:0078655"}


id: GO:0060216
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A second wave of blood cell production that, in vertebrates, generates long-term hemopoietic stem cells that continuously provide erythroid, myeloid and lymphoid lineages throughout adulthood.","definition_xrefs":["PMID:15378083","PMID:15617691","GOC:bf","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemopoiesis","termid":"GO:0030097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"definitive hemopoiesis","synonyms":[{"name":"definitive haematopoiesis","type":"related"},{"name":"definitive haemopoiesis","type":"exact"},{"name":"definitive hematopoiesis","type":"exact"}],"termid":"GO:0060216"}


id: GO:0031169
data:
  {"annotated_genes":["SJAG_04031","SJAG_04032","SJAG_00792"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90174,90182],"is_not":false,"summary":null,"term":"GO:0031169"},{"annotations":[90129],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1905569"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a ferrichrome. Ferrichromes are any of a group of growth-promoting Fe(III) chelates formed by various genera of microfungi. They are homodetic cyclic hexapeptides made up of a tripeptide of glycine (or other small neutral amino acids) and a tripeptide of an N'acyl-N4-hydroxy-L-ornithine.","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydroxymate-containing siderophore biosynthetic process","termid":"GO:0019539"},{"relation_name":"is_a","term_name":"ferrichrome metabolic process","termid":"GO:0031168"},{"relation_name":"is_a","term_name":"amide biosynthetic process","termid":"GO:0043604"},{"relation_name":"is_a","term_name":"organonitrogen compound biosynthetic process","termid":"GO:1901566"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00792":null,"SJAG_04031":null,"SJAG_04032":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"ferrichrome biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0031199","GO:0031200"],"synonyms":[{"name":"ferrichrome anabolism","type":"exact"},{"name":"ferrichrome biosynthesis","type":"exact"},{"name":"ferrichrome biosynthetic process, peptide formation","type":"narrow"},{"name":"ferrichrome biosynthetic process, peptide modification","type":"narrow"},{"name":"ferrichrome formation","type":"exact"},{"name":"ferrichrome synthesis","type":"exact"}],"termid":"GO:0031169","terms_by_termid":{"GO:0031169":null,"GO:1905569":null}}


id: GO:0043521
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the disassembly of a bipolar filament composed of myosin II molecules.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein-containing complex disassembly","termid":"GO:0043244"},{"relation_name":"is_a","term_name":"regulation of myosin II filament organization","termid":"GO:0043519"},{"relation_name":"regulates","term_name":"myosin II filament disassembly","termid":"GO:0031037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0007010","GO:0030036","GO:0008150"],"is_obsolete":false,"name":"regulation of myosin II filament disassembly","termid":"GO:0043521"}


id: FYPO:0009005
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in mitotic interphase in which microtubule-based movement oscillations occur at a faster speed than normal in a daughter cell that inherits no mitochondria.","definition_xrefs":["PMID:36633091","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule-based movement during vegetative growth","termid":"FYPO:0005461"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"increased interphase nuclear movement velocity in daughter cell without mitochondria","synonyms":[{"name":"increased interphase nuclear oscillation velocity in daughter cell without mitochondria","type":"exact"}],"termid":"FYPO:0009005"}


id: PBO:0060836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEDD8-MDP1 readthrough","termid":"PBO:0060836"}


id: FYPO:0009113
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle polar microtubules during anaphase B does not occur.","definition_xrefs":["PMID:34080538"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to mitotic spindle during mitosis","termid":"FYPO:0004754"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to mitotic spindle polar microtubules during anaphase B","synonyms":[{"name":"abolished protein localisation to interpolar microtubules during mitotic anaphase B","type":"exact"},{"name":"abolished protein localisation to mitotic spindle polar microtubules during anaphase B","type":"exact"},{"name":"abolished protein localization to interpolar microtubules during mitotic anaphase B","type":"exact"}],"termid":"FYPO:0009113"}


id: GO:0102772
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a dihydroceramide + 2 Fe(II)-[cytochrome b5] + 2 H+ + O2 = a phytoceramide + 2 Fe(III)-[cytochrome b5] + H2O.","definition_xrefs":["EC:1.14.18.5","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen","termid":"GO:0016716"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"sphingolipid C4-monooxygenase activity","secondary_identifiers":["MetaCyc:RXN-14250","RHEA:55808"],"synonyms":[{"name":"sphingolipid long-chain base 4-hydroxylase activity","type":"related"}],"termid":"GO:0102772"}


id: PBO:0086480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative mitochondrial ribosomal protein of the small subunit; has similarity to E. coli S13 ribosomal protein; participates in controlling sporulation efficiency; localizes to vacuole in response to H2O2","termid":"PBO:0086480"}


id: PBO:0074330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMARCA5 antisense RNA 1","termid":"PBO:0074330"}


id: PBO:0041019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BPI fold containing family B member 2","termid":"PBO:0041019"}


id: GO:0047195
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sterol + 1,2-diacylglycerol = sterol ester + acylglycerol.","definition_xrefs":["MetaCyc:2.3.1.73-RXN","EC:2.3.1.73"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016746","GO:0003824"],"is_obsolete":false,"name":"diacylglycerol-sterol O-acyltransferase activity","secondary_identifiers":["RHEA:13301"],"synonyms":[{"name":"1,2-diacyl-sn-glycerol:sterol O-acyltransferase activity","type":"related"},{"name":"1,2-diacyl-sn-glycerol:sterol acyl transferase activity","type":"related"}],"termid":"GO:0047195"}


id: GO:0039714
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A viral factory located in the cytoplasm of a host cell.","definition_xrefs":["VZ:1951"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell cytoplasm part","termid":"GO:0033655"},{"relation_name":"is_a","term_name":"viral factory","termid":"GO:0039713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cytoplasmic viral factory","termid":"GO:0039714"}


id: GO:0018193
data:
  {"annotated_genes":["SJAG_01418","SJAG_00727","SJAG_05032","SJAG_01985","SJAG_04085","SJAG_02467","SJAG_00604","SJAG_01776","SJAG_04846","SJAG_01058","SJAG_02503","SJAG_03843","SJAG_04544","SJAG_00251","SJAG_00235","SJAG_02082"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57387],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0033234"},{"annotations":[101273,96621,107180,105728,96768,111728,113454,114758],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0017183"},{"annotations":[85854,100513,85695,105575,93824,92271,110658],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016925"}]},"cv_name":"biological_process","definition":"The alteration of an amino acid residue in a peptide.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00235":null,"SJAG_00251":null,"SJAG_00604":null,"SJAG_00727":null,"SJAG_01058":null,"SJAG_01418":null,"SJAG_01776":null,"SJAG_01985":null,"SJAG_02082":null,"SJAG_02467":null,"SJAG_02503":null,"SJAG_03843":null,"SJAG_04085":null,"SJAG_04544":null,"SJAG_04846":null,"SJAG_05032":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-amino acid modification","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"termid":"GO:0018193","terms_by_termid":{"GO:0016925":null,"GO:0017183":null,"GO:0033234":null}}


id: PBO:0029342
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_level_of_mitochondrial_polycistronic_RNA_precursors","termid":"PBO:0029342"}


id: GO:1902265
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the maintenance of an internal steady state of abscisic acid within an organism or cell.","definition_xrefs":["PMID:23252460","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid homeostasis","termid":"GO:0055088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"abscisic acid homeostasis","synonyms":[{"name":"2-cis-abscisate homeostasis","type":"related"},{"name":"ABA homeostasis","type":"related"}],"termid":"GO:1902265"}


id: GO:1901772
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving lincomycin.","definition_xrefs":["PMID:8577249","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular modified amino acid metabolic process","termid":"GO:0006575"},{"relation_name":"is_a","term_name":"S-glycoside metabolic process","termid":"GO:0016143"},{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"lincomycin metabolic process","synonyms":[{"name":"lincomycin metabolism","type":"exact"}],"termid":"GO:1901772"}


id: PBO:0085330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphatidylinositol transfer protein; has a potential role in regulating lipid and fatty acid metabolism under heme-depleted conditions; interacts specifically with thioredoxin peroxidase; may have a role in oxidative stress resistance; protein abundance increases in response to DNA replication stress","termid":"PBO:0085330"}


id: FYPO:0004063
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to all or part of the cytoplasm is normal (i.e. indistinguishable from wild type) during a cellular response to salt stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to cytoplasm","termid":"FYPO:0001788"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001312","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal protein localization to cytoplasm during cellular response to salt stress","synonyms":[{"name":"normal protein localisation to cytoplasm during cellular response to salt stress","type":"exact"},{"name":"normal protein localization to cytoplasm during cellular response to salt stress during mitotic cell cycle","type":"related"},{"name":"normal protein localization to cytoplasm during cellular response to salt stress during vegetative growth","type":"exact"},{"name":"normal protein localization to cytoplasm during salt stress","type":"exact"}],"termid":"FYPO:0004063"}


id: PR:Q09740
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glutamine--fructose-6-phosphate aminotransferase [isomerizing] that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamine--fructose-6-phosphate aminotransferase [isomerizing] (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC12C2.11","secondary_identifiers":["UniProtKB:Q09740"],"synonyms":[{"name":"D-fructose-6-phosphate amidotransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GFAT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-glmS","type":"exact"},{"name":"hexosephosphate aminotransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09740"}


id: GO:0046401
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of the core region of bacterial lipopolysaccharides, which contains ten saccharide residues. The structure of this core oligosaccharide appears to be similar in closely related bacterial strains.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide metabolic process","termid":"GO:0009311"},{"relation_name":"part_of","term_name":"lipopolysaccharide metabolic process","termid":"GO:0008653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"lipopolysaccharide core region metabolic process","synonyms":[{"name":"LPS core region metabolic process","type":"exact"},{"name":"lipopolysaccharide core region metabolism","type":"exact"}],"termid":"GO:0046401"}


id: SO:0001793
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A read from an end of the clone sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"read","termid":"SO:0000150"},{"relation_name":"part_of","term_name":"clone","termid":"SO:0000151"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clone_end","synonyms":[{"name":"clone end","type":"exact"}],"termid":"SO:0001793"}


