# terms

id: GO:0019622
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 3-(3-hydroxy)phenylpropionate, a hydroxylated derivative of phenylpropionate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol catabolic process","termid":"GO:0046164"},{"relation_name":"is_a","term_name":"3-(3-hydroxy)phenylpropionate metabolic process","termid":"GO:0046435"},{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"3-(3-hydroxy)phenylpropionate catabolic process","secondary_identifiers":["MetaCyc:HCAMHPDEG-PWY"],"synonyms":[{"name":"3-(3-hydroxy)phenylpropionate breakdown","type":"exact"},{"name":"3-(3-hydroxy)phenylpropionate catabolism","type":"exact"},{"name":"3-(3-hydroxy)phenylpropionate degradation","type":"exact"}],"termid":"GO:0019622"}


id: PR:P87234
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gyp3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87234"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase-activating protein gyp3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4G3.09c","synonyms":[{"name":"Spom972h-gyp3","type":"exact"}],"termid":"PR:P87234"}


id: PBO:0000847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ino80 complex HMG box protein Nht1","termid":"PBO:0000847"}


id: PBO:0062369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily A member 5","termid":"PBO:0062369"}


id: GO:0008833
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endonucleolytic cleavage to 5'-phosphooligonucleotide end-products.","definition_xrefs":["EC:3.1.21.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endodeoxyribonuclease activity, producing 5'-phosphomonoesters","termid":"GO:0016888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0003824","GO:0140097","GO:0016787","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"deoxyribonuclease IV (phage-T4-induced) activity","secondary_identifiers":["MetaCyc:RXN-20410"],"synonyms":[{"name":"DNA-adenine-transferase activity","type":"related"},{"name":"E. coli endonuclease IV","type":"related"},{"name":"Escherichia coli endonuclease II","type":"related"},{"name":"deoxriboendonuclease activity","type":"related"},{"name":"deoxyribonuclease IV (phage T4-induced) activity","type":"related"},{"name":"endodeoxyribonuclease IV (phage T(4)-induced) activity","type":"related"},{"name":"endodeoxyribonuclease IV (phage T4-induced) activity","type":"related"},{"name":"endonuclease II","type":"related"},{"name":"endonuclease IV activity","type":"related"},{"name":"redoxyendonuclease activity","type":"related"}],"termid":"GO:0008833"}


id: PBO:0043880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CREB3 regulatory factor","termid":"PBO:0043880"}


id: GO:0031490
data:
  {"annotated_genes":["SJAG_05333","SJAG_03354","SJAG_00861","SJAG_01827","SJAG_00585","SJAG_00698","SJAG_02815","SJAG_03944","SJAG_04879","SJAG_00164"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91599,103023,105969,107147,110413],"is_not":false,"summary":null,"term":"GO:0031490"},{"annotations":[95629,102947,105156,111370],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043035"},{"annotations":[107906],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140585"}]},"cv_name":"molecular_function","definition":"Binding to DNA that is assembled into chromatin.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA binding","termid":"GO:0003677"},{"relation_name":"is_a","term_name":"chromatin binding","termid":"GO:0003682"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00164":null,"SJAG_00585":null,"SJAG_00698":null,"SJAG_00861":null,"SJAG_01827":null,"SJAG_02815":null,"SJAG_03354":null,"SJAG_03944":null,"SJAG_04879":null,"SJAG_05333":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0003677","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"chromatin DNA binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0031490","terms_by_termid":{"GO:0031490":null,"GO:0043035":null,"GO:0140585":null}}


id: GO:1904924
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of mitophagy in response to mitochondrial depolarization.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:22020285","GOC:PARL","GOC:pad"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of autophagy of mitochondrion in response to mitochondrial depolarization","termid":"GO:1904923"},{"relation_name":"negatively_regulates","term_name":"mitophagy","termid":"GO:0000423"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0006914"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007005"},{"rel_name":"negatively_regulates","termid":"GO:0007005"},{"rel_name":"negatively_regulates","termid":"GO:0006914"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0006914","GO:0007005"],"is_obsolete":false,"name":"negative regulation of mitophagy in response to mitochondrial depolarization","synonyms":[{"name":"down regulation of mitophagy in response to mitochondrial depolarization","type":"exact"},{"name":"down-regulation of mitophagy in response to mitochondrial depolarization","type":"exact"},{"name":"downregulation of mitophagy in response to mitochondrial depolarization","type":"exact"},{"name":"inhibition of mitophagy in response to mitochondrial depolarization","type":"narrow"}],"termid":"GO:1904924"}


id: PBO:0069826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1112, pseudogene","termid":"PBO:0069826"}


id: PBO:0039911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho guanine nucleotide exchange factor 10","termid":"PBO:0039911"}


id: GO:0032735
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-12 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-12 production","termid":"GO:0032655"},{"relation_name":"positively_regulates","term_name":"interleukin-12 production","termid":"GO:0032615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of interleukin-12 production","secondary_identifiers":["GO:0045084","GO:2001184"],"synonyms":[{"name":"activation of interleukin-12 production","type":"narrow"},{"name":"positive regulation of CLMF production","type":"related"},{"name":"positive regulation of IL-12 production","type":"exact"},{"name":"positive regulation of NKSF production","type":"related"},{"name":"positive regulation of interleukin-12 biosynthetic process","type":"narrow"},{"name":"positive regulation of interleukin-12 secretion","type":"narrow"},{"name":"stimulation of interleukin-12 production","type":"narrow"},{"name":"up regulation of interleukin-12 production","type":"exact"},{"name":"up-regulation of interleukin-12 production","type":"exact"},{"name":"upregulation of interleukin-12 production","type":"exact"}],"termid":"GO:0032735"}


id: PBO:0067135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 183, pseudogene","termid":"PBO:0067135"}


id: GO:0006556
data:
  {"annotated_genes":["SJAG_03659"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99443],"is_not":false,"summary":null,"term":"GO:0006556"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound biosynthetic process","termid":"GO:0044272"},{"relation_name":"is_a","term_name":"S-adenosylmethionine metabolic process","termid":"GO:0046500"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03659":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"S-adenosylmethionine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:SAM-PWY"],"synonyms":[{"name":"S-adenosyl methionine biosynthesis","type":"exact"},{"name":"S-adenosyl methionine biosynthetic process","type":"exact"},{"name":"S-adenosylmethionine anabolism","type":"exact"},{"name":"S-adenosylmethionine biosynthesis","type":"exact"},{"name":"S-adenosylmethionine formation","type":"exact"},{"name":"S-adenosylmethionine synthesis","type":"exact"},{"name":"SAM biosynthetic process","type":"exact"}],"termid":"GO:0006556","terms_by_termid":{"GO:0006556":null}}


id: GO:0031450
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of slow-twitch skeletal muscle contraction.","definition_xrefs":["GOC:tb","GOC:mtg_muscle","GOC:dph","GOC:mah","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of slow-twitch skeletal muscle fiber contraction","termid":"GO:0031449"},{"relation_name":"is_a","term_name":"negative regulation of striated muscle contraction","termid":"GO:0045988"},{"relation_name":"negatively_regulates","term_name":"slow-twitch skeletal muscle fiber contraction","termid":"GO:0031444"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of slow-twitch skeletal muscle fiber contraction","synonyms":[{"name":"down regulation of slow-twitch skeletal muscle contraction","type":"exact"},{"name":"down-regulation of slow-twitch skeletal muscle contraction","type":"exact"},{"name":"downregulation of slow-twitch skeletal muscle contraction","type":"exact"},{"name":"inhibition of slow-twitch skeletal muscle contraction","type":"narrow"},{"name":"negative regulation of slow-twitch skeletal muscle contraction","type":"exact"}],"termid":"GO:0031450"}


id: PBO:0053150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lactate dehydrogenase A pseudogene 7","termid":"PBO:0053150"}


id: FYPO:0000856
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleosome positioning is normal (i.e. indistinguishable from wild type). Nucleosome positioning is the ordering of successions of nucleosomes into regular arrays so that nucleosomes are positioned at defined distances from one another.","definition_xrefs":["PomBase:mah","GO:0016584"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal nucleosome positioning","synonyms":[{"name":"normal nucleosome occupancy","type":"related"},{"name":"normal nucleosome positioning during mitotic cell cycle","type":"related"},{"name":"normal nucleosome positioning during vegetative growth","type":"exact"},{"name":"normal nucleosome spacing","type":"exact"}],"termid":"FYPO:0000856"}


id: PBO:0043063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHRFAM7A pseudogene 1","termid":"PBO:0043063"}


id: GO:0003958
data:
  {"annotated_genes":["SJAG_04270","SJAG_00972","SJAG_04397"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84340,89258,103741],"is_not":false,"summary":null,"term":"GO:0003958"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NADPH + H+ + n oxidized hemoprotein = NADP+ + n reduced hemoprotein.","definition_xrefs":["EC:1.6.2.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor","termid":"GO:0016653"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00972":null,"SJAG_04270":null,"SJAG_04397":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"NADPH-hemoprotein reductase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:24040","Reactome:R-HSA-76494","MetaCyc:NADPH--FERRIHEMOPROTEIN-REDUCTASE-RXN"],"synonyms":[{"name":"CPR activity","type":"related"},{"name":"FAD-cytochrome c reductase activity","type":"related"},{"name":"NADP--cytochrome c reductase activity","type":"narrow"},{"name":"NADP--cytochrome reductase activity","type":"narrow"},{"name":"NADPH--cytochrome P450 oxidoreductase activity","type":"narrow"},{"name":"NADPH--cytochrome P450 reductase activity","type":"narrow"},{"name":"NADPH--cytochrome c oxidoreductase activity","type":"narrow"},{"name":"NADPH--cytochrome c reductase activity","type":"narrow"},{"name":"NADPH--ferricytochrome c oxidoreductase activity","type":"narrow"},{"name":"NADPH--ferrihemoprotein reductase activity","type":"narrow"},{"name":"NADPH-cytochrome P-450 oxidoreductase activity","type":"related"},{"name":"NADPH-cytochrome p-450 reductase activity","type":"related"},{"name":"NADPH-dependent cytochrome c reductase activity","type":"narrow"},{"name":"NADPH-ferrihemoprotein reductase activity","type":"exact"},{"name":"NADPH:P-450 reductase activity","type":"related"},{"name":"NADPH:P450 reductase activity","type":"narrow"},{"name":"NADPH:cytochrome P450 reductase activity","type":"exact"},{"name":"NADPH:cytochrome c reductase activity","type":"exact"},{"name":"NADPH:ferrihemoprotein oxidoreductase activity","type":"related"},{"name":"NADPH:hemoprotein oxidoreductase activity","type":"related"},{"name":"POR","type":"related"},{"name":"TPNH(2) cytochrome c reductase activity","type":"narrow"},{"name":"TPNH-cytochrome c reductase activity","type":"narrow"},{"name":"TPNH2 cytochrome c reductase activity","type":"related"},{"name":"aldehyde reductase (NADPH-dependent) activity","type":"related"},{"name":"cytochrome P-450 reductase activity","type":"related"},{"name":"cytochrome P450 reductase activity","type":"narrow"},{"name":"cytochrome c reductase (reduced nicotinamide adenine dinucleotide phosphate, NADPH, NADPH-dependent) activity","type":"narrow"},{"name":"dihydroxynicotinamide adenine dinucleotide phosphate-cytochrome c reductase activity","type":"narrow"},{"name":"ferrihemoprotein P-450 reductase activity","type":"related"},{"name":"reduced nicotinamide adenine dinucleotide phosphate-cytochrome c reductase activity","type":"narrow"},{"name":"reductase, cytochrome c (reduced nicotinamide adenine dinucleotide phosphate) activity","type":"narrow"}],"termid":"GO:0003958","terms_by_termid":{"GO:0003958":null}}


id: PBO:0024811
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-causal_relation_between_material_entity_and_a_process","termid":"PBO:0024811"}


id: GO:0009322
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An enzyme complex that catalyzes the reduction of trimethylamine N-oxide to trimethylamine.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"trimethylamine-N-oxide reductase complex","termid":"GO:0009322"}


id: PBO:0039755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amyloid beta precursor protein","termid":"PBO:0039755"}


id: PBO:0002747
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fusion cytochrome c oxidase assembly protein Cox1102, mitochondrial ribosomal protein Rsm2202 (predicted)","termid":"PBO:0002747"}


id: GO:1904899
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of hepatic stellate cell proliferation.","definition_xrefs":["PMID:15358192","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of fibroblast proliferation","termid":"GO:0048146"},{"relation_name":"is_a","term_name":"regulation of hepatic stellate cell proliferation","termid":"GO:1904897"},{"relation_name":"positively_regulates","term_name":"hepatic stellate cell proliferation","termid":"GO:1990922"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hepatic stellate cell proliferation","synonyms":[{"name":"activation of Ito cell proliferation","type":"narrow"},{"name":"activation of hepatic perisinusoidal cell proliferation","type":"narrow"},{"name":"activation of hepatic stellate cell proliferation","type":"narrow"},{"name":"activation of perisinusoidal cell proliferation","type":"narrow"},{"name":"positive regulation of Ito cell proliferation","type":"exact"},{"name":"positive regulation of hepatic perisinusoidal cell proliferation","type":"exact"},{"name":"positive regulation of perisinusoidal cell proliferation","type":"exact"},{"name":"up regulation of Ito cell proliferation","type":"exact"},{"name":"up regulation of hepatic perisinusoidal cell proliferation","type":"exact"},{"name":"up regulation of hepatic stellate cell proliferation","type":"exact"},{"name":"up regulation of perisinusoidal cell proliferation","type":"exact"},{"name":"up-regulation of Ito cell proliferation","type":"exact"},{"name":"up-regulation of hepatic perisinusoidal cell proliferation","type":"exact"},{"name":"up-regulation of hepatic stellate cell proliferation","type":"exact"},{"name":"up-regulation of perisinusoidal cell proliferation","type":"exact"},{"name":"upregulation of Ito cell proliferation","type":"exact"},{"name":"upregulation of hepatic perisinusoidal cell proliferation","type":"exact"},{"name":"upregulation of hepatic stellate cell proliferation","type":"exact"},{"name":"upregulation of perisinusoidal cell proliferation","type":"exact"}],"termid":"GO:1904899"}


id: PBO:0070884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L15 pseudogene 16","termid":"PBO:0070884"}


id: PR:O14044
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An RNA-binding protein PNO1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01774","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-rRNA-processing protein pno1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2C4.11c","secondary_identifiers":["UniProtKB:O14044"],"synonyms":[{"name":"Spom972h-PNO1","type":"exact"},{"name":"ribosomal RNA-processing protein 28 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14044"}


id: PBO:0003857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin-like protein Arp4","termid":"PBO:0003857"}


id: GO:0035333
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The proteolytic cleavages to the Notch protein that occur as a result of ligand binding. Ligand binding at the cell surface exposes an otherwise inaccessible cleavage site in the extracellular portion of Notch, which when cleaved releases a membrane-tethered form of the Notch intracellular domain. Subsequent cleavage within the transmembrane domain then leads to the release of the soluble Notch intracellular domain (NICD).","definition_xrefs":["GOC:bf","PMID:12651094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein intracellular domain proteolysis","termid":"GO:0031293"},{"relation_name":"part_of","term_name":"Notch signaling pathway","termid":"GO:0007219"},{"relation_name":"part_of","term_name":"Notch receptor processing","termid":"GO:0007220"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"Notch receptor processing, ligand-dependent","synonyms":[{"name":"Notch S2 cleavage","type":"narrow"},{"name":"Notch S3 cleavage","type":"narrow"}],"termid":"GO:0035333"}


id: PBO:0071128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 130","termid":"PBO:0071128"}


id: PBO:0050692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family A (Hsp70) member pseudogene 19","termid":"PBO:0050692"}


id: PR:O13792
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A spliceosome RNA helicase BAT1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01507","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase uap56 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17G6.14c","secondary_identifiers":["UniProtKB:O13792"],"synonyms":[{"name":"Spom972h-DDX39B","type":"exact"}],"termid":"PR:O13792"}


id: PBO:0089365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar zinc exporter, ZIP family, Zip2","termid":"PBO:0089365"}


id: GO:0106081
data:
  {"annotated_genes":["SJAG_03960"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91835],"is_not":false,"summary":null,"term":"GO:0106081"}]},"cv_name":"biological_process","definition":"The directed movement of maltose from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["PMID:11136464"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate import across plasma membrane","termid":"GO:0098704"},{"relation_name":"is_a","term_name":"maltose transmembrane transport","termid":"GO:1904981"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03960":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"maltose import across plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106081","terms_by_termid":{"GO:0106081":null}}


id: FYPO:0000826
data:
  {"alleles_by_uniquename":{"SJAG_03689:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03689","name":"dcr1delta","uniquename":"SJAG_03689:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115550],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004205"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell is lower than normal. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered RNA level","termid":"FYPO:0000824"},{"relation_name":"is_a","term_name":"decreased level of substance in cell","termid":"FYPO:0000991"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03689":null},"genotype_count":1,"genotypes_by_uniquename":{"dcr1delta":{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0006551"],"is_obsolete":false,"name":"decreased RNA level","references_by_uniquename":{"PMID:35226668":null},"single_locus_annotated_genes":["SJAG_03689"],"single_locus_genotype_uniquenames":["dcr1delta"],"synonyms":[{"name":"RNA accumulation: decreased","type":"related"},{"name":"decreased RNA accumulation","type":"related"},{"name":"decreased cellular RNA level","type":"exact"},{"name":"decreased cellular mRNA level","type":"narrow"},{"name":"decreased transcript level","type":"exact"},{"name":"reduced RNA level","type":"exact"}],"termid":"FYPO:0000826","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000162":null,"FYPO:0004205":null,"FYPO_EXT:0000001":null}}


id: GO:0031522
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A transmembrane protein complex involved in the translocation of proteins across the cytoplasmic membrane. In Gram-negative bacteria, Sec-translocated proteins are subsequently secreted via the type II, IV, or V secretion systems. Sec complex components include SecA, D, E, F, G, Y and YajC.","definition_xrefs":["GOC:mtg_sensu","PMID:15223057"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"cell envelope Sec protein transport complex","synonyms":[{"name":"Sec complex","type":"broad"},{"name":"Sec secretion complex","type":"narrow"},{"name":"Sec translocation complex","type":"narrow"},{"name":"plasma membrane Sec complex","type":"related"}],"termid":"GO:0031522"}


id: PBO:0047009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A12, pseudogene","termid":"PBO:0047009"}


id: PBO:0082241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha subunit of COPI vesicle coatomer complex; complex surrounds transport vesicles in the early secretory pathway","termid":"PBO:0082241"}


id: PBO:0109390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 19","termid":"PBO:0109390"}


id: FYPO:0005883
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which a cell population does not grow under anaerobic conditions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished vegetative cell population growth","termid":"FYPO:0001575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002058","FYPO:0002057","FYPO:0001985","FYPO:0000003","FYPO:0005447","FYPO:0002060"],"is_obsolete":false,"name":"abolished anaerobic cell population growth","synonyms":[{"name":"abolished anaerobic vegetative cell population growth","type":"exact"},{"name":"anaerobic cell population growth abolished","type":"exact"}],"termid":"FYPO:0005883"}


id: PBO:0090397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AAA family ATPase Vps4","termid":"PBO:0090397"}


id: GO:0030266
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (-)-quinate + NAD+ = (-)-3-dehydroquinate + NADH + H+.","definition_xrefs":["EC:1.1.1.24"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"quinate 3-dehydrogenase (NAD+) activity","secondary_identifiers":["KEGG_REACTION:R01872","RHEA:22364","MetaCyc:QUINATE-5-DEHYDROGENASE-RXN","EC:1.1.1.282"],"synonyms":[{"name":"quinate:NAD 3-oxidoreductase activity","type":"exact"},{"name":"quinate:NAD 5-oxidoreductase activity","type":"related"},{"name":"quinate:NAD(+) 3-oxidoreductase activity","type":"exact"},{"name":"quinate:NAD(+) 5-oxidoreductase activity","type":"related"},{"name":"quinic dehydrogenase activity","type":"broad"}],"termid":"GO:0030266"}


id: PBO:0038544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abhydrolase domain containing 16A, phospholipase","termid":"PBO:0038544"}


id: PR:O74894
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 26S protease regulatory subunit 6B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04939","PRO:DNx","PANTHER:PTHR23073:SF8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26S protease regulatory subunit 6B homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC576.10c","secondary_identifiers":["UniProtKB:O74894"],"synonyms":[{"name":"Spom972h-PSMC4","type":"exact"}],"termid":"PR:O74894"}


id: PBO:0083636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eIF3g subunit of the eukaryotic translation initiation factor 3 (eIF3); subunit of the core complex of eIF3; is essential for translation; stimulates resumption of ribosomal scanning during translation reinitiation; eIF3 is also involved in programmed stop codon readthrough","termid":"PBO:0083636"}


id: FYPO:0005323
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which error-free translesion synthesis is abnormal. Error-free translesion synthesis a DNA repair process that results in the conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication by using a specialized DNA polymerase or replication complex to insert a defined nucleotide across from the lesion.","definition_xrefs":["PomBase:mah","GO:0070987"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA repair during vegetative growth","termid":"FYPO:0000188"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000293","FYPO:0000002","FYPO:0000298","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal error-free translesion synthesis","synonyms":[{"name":"abnormal error-free translesion synthesis during mitotic cell cycle","type":"related"},{"name":"abnormal error-free translesion synthesis during vegetative growth","type":"exact"}],"termid":"FYPO:0005323"}


id: PBO:0091878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PI31 proteasome regulator Fub2","termid":"PBO:0091878"}


id: PBO:0036542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"notchless-like ribosome biogenesis protein Rsa4 (predicted)","termid":"PBO:0036542"}


id: PBO:0004058
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"required in h+ but not in h-cells","termid":"PBO:0004058"}


id: FYPO:0001085
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a polysaccharide measured in a cell differs from normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell during vegetative growth","termid":"FYPO:0001323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"altered polysaccharide level during vegetative growth","synonyms":[{"name":"abnormal polysaccharide level during vegetative growth","type":"exact"},{"name":"altered cellular polysaccharide level during vegetative growth","type":"exact"},{"name":"altered polysaccharide level during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001085"}


id: PBO:0078879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily V member 2","termid":"PBO:0078879"}


id: PATO:0010001
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in the bearer by virtue of the bearer consisting of multiple structures lacking any physical connection to each other.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"disconnected","termid":"PATO:0010001"}


id: PBO:0034466
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_level_of_mitochondrial_transport_gene_mRNA_during_vegetative_growth","termid":"PBO:0034466"}


id: PBO:0087676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the mitochondrial alpha-ketoglutarate dehydrogenase; recruits E3 subunit (Lpd1p) to the E1-E2 (Kgd1p, Kgd2p) core; exists in two forms derived from a single mRNA translated from two alternative start sites; has similarity to human mitochondrial ribosomal protein MRP-S36","termid":"PBO:0087676"}


id: CHEBI:34653
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Congo Red","termid":"CHEBI:34653"}


id: GO:0008734
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-aspartate + O2 = iminosuccinate + H2O2. Can also use fumatate as electron acceptor under anaerobic conditions, yielding succinate.","definition_xrefs":["EC:1.4.3.16"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-amino-acid oxidase activity","termid":"GO:0001716"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"L-aspartate oxidase activity","synonyms":[{"name":"L-aspartate:oxygen oxidoreductase","type":"related"}],"termid":"GO:0008734"}


id: GO:0030021
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A constituent of the extracellular matrix that enables the matrix to resist compressive forces; often a proteoglycan.","definition_xrefs":["GOC:mah","ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix structural constituent","termid":"GO:0005201"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005198"}],"interesting_parent_ids":["GO:0005198","GO:0003674"],"is_obsolete":false,"name":"extracellular matrix structural constituent conferring compression resistance","synonyms":[{"name":"core extracellular matrix","type":"broad"},{"name":"core matrisome","type":"broad"}],"termid":"GO:0030021"}


id: PBO:0080280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 43 pseudogene","termid":"PBO:0080280"}


id: GO:0140035
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A molecular adaptor that recognizes and binds a target protein containing a ubiquitin-like modification and that brings the target protein into contact with another protein to allow those proteins to function in a coordinated way.","definition_xrefs":["PMID:26060076"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-macromolecule adaptor activity","termid":"GO:0030674"},{"relation_name":"is_a","term_name":"modification-dependent protein binding","termid":"GO:0140030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030674"}],"interesting_parent_ids":["GO:0060090","GO:0005515","GO:0030674","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"ubiquitin-like protein reader activity","synonyms":[{"name":"ubiquitination-like modification-dependent protein binding","type":"exact"},{"name":"ubiquitination-like protein reader activity","type":"exact"}],"termid":"GO:0140035"}


id: PBO:0091505
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-coding RNA Associated to Mmi1","termid":"PBO:0091505"}


id: GO:1990070
data:
  {"annotated_genes":["SJAG_02525","SJAG_01415","SJAG_04021","SJAG_04837","SJAG_03467","SJAG_02655","SJAG_04618"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[84774,85444,93376,95156,98575,100917,105842],"is_not":false,"summary":null,"term":"GO:1990070"}]},"cv_name":"cellular_component","definition":"A complex that tethers COPII vesicles at ER-Golgi intermediate compartment. Its role in this part of the vesicular transport may start at the ER exit sites. Binds to a component of the COPII coat. In yeast it includes the following subunits: Bet3 (as homodimer), Bet5, Trs20, Trs23, Trs31, Trs33 which are regarded as the core subunits of all TRAPP complexes in yeast.","definition_xrefs":["GOC:bhm","PMID:22669257","PMID:20375281"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TRAPP complex","termid":"GO:0030008"},{"relation_name":"part_of","term_name":"endoplasmic reticulum-Golgi intermediate compartment","termid":"GO:0005793"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01415":null,"SJAG_02525":null,"SJAG_02655":null,"SJAG_03467":null,"SJAG_04021":null,"SJAG_04618":null,"SJAG_04837":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"TRAPPI protein complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"TRAPP core complex","type":"exact"}],"termid":"GO:1990070","terms_by_termid":{"GO:1990070":null}}


id: PBO:0039382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aminomethyltransferase","termid":"PBO:0039382"}


id: PBO:0043879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cAMP responsive element binding protein like 2","termid":"PBO:0043879"}


id: GO:0004205
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete caspase-8 activity (obsolete GO:0004205)","synonyms":[{"name":"caspase-8 activity","type":"exact"}],"termid":"GO:0004205"}


id: PBO:0087163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase III subunit C17; physically interacts with C31, C11, and TFIIIB70; may be involved in the recruitment of pol III by the preinitiation complex; protein abundance increases in response to DNA replication stress; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0087163"}


id: PBO:0054972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2386","termid":"PBO:0054972"}


id: PBO:0042757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEP19 pseudogene 1","termid":"PBO:0042757"}


id: PBO:0076617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin folding cofactor A pseudogene 2","termid":"PBO:0076617"}


id: FYECO:0000199
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which lysine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ lys","synonyms":[{"name":"lysine added","type":"exact"}],"termid":"FYECO:0000199"}


id: GO:0003295
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of cells that contributes to the reorganization of tissue resulting in the maturation of the atrial ventricular junction.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell proliferation involved in heart morphogenesis","termid":"GO:0061323"},{"relation_name":"part_of","term_name":"atrial ventricular junction remodeling","termid":"GO:0003294"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell proliferation involved in atrial ventricular junction remodeling","synonyms":[{"name":"cell proliferation involved in atrial ventricular junction remodelling","type":"exact"},{"name":"cell proliferation involved in atrio-ventricular junction remodeling","type":"exact"},{"name":"cell proliferation involved in atrio-ventricular junction remodelling","type":"exact"},{"name":"cell proliferation involved in atrioventricular junction remodeling","type":"exact"},{"name":"cell proliferation involved in atrioventricular junction remodelling","type":"exact"}],"termid":"GO:0003295"}


id: GO:0140999
data:
  {"annotated_genes":["SJAG_00769"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[112556],"is_not":false,"summary":null,"term":"GO:0140999"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-lysyl4-[histone H3] + 3 S-adenosyl-L-methionine = 2 H+ + N6,N6-trimethyl-L-lysyl4-[histone H3] + 3 S-adenosyl-L-homocysteine. This reaction is the successive addition of three methyl groups to the unmethylated lysine residue at position 4 of histone H3, producing histone H3K4me3.","definition_xrefs":["PMID:18375658","RHEA:60260"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3K4 methyltransferase activity","termid":"GO:0042800"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00769":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0140096","GO:0008276","GO:0016740","GO:0016741","GO:0003674"],"is_obsolete":false,"name":"histone H3K4 trimethyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:2.1.1.354"],"synonyms":[{"name":"histone H3-K4 trimethylation","type":"broad"},{"name":"histone H3K4 trimethylase activity","type":"exact"},{"name":"histone H3K4 trimethylation","type":"broad"},{"name":"histone lysine N-trimethyltransferase activity (H3-K4 specific)","type":"exact"}],"termid":"GO:0140999","terms_by_termid":{"GO:0140999":null}}


id: GO:0016990
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-arginine + H2O = L-citrulline + NH3.","definition_xrefs":["EC:3.5.3.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016810","GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"arginine deiminase activity","secondary_identifiers":["MetaCyc:ARGININE-DEIMINASE-RXN","RHEA:19597"],"synonyms":[{"name":"L-arginine deiminase activity","type":"related"},{"name":"L-arginine iminohydrolase activity","type":"related"},{"name":"arginine dihydrolase activity","type":"related"},{"name":"citrulline iminase activity","type":"related"}],"termid":"GO:0016990"}


id: PBO:0043990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colony stimulating factor 3 receptor","termid":"PBO:0043990"}


id: PBO:0063999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 33","termid":"PBO:0063999"}


id: PBO:0050384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A3 pseudogene 8","termid":"PBO:0050384"}


id: GO:0046621
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of growth of an organ of an organism.","definition_xrefs":["GOC:tb","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organ growth","termid":"GO:0046620"},{"relation_name":"is_a","term_name":"negative regulation of developmental growth","termid":"GO:0048640"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"negatively_regulates","term_name":"organ growth","termid":"GO:0035265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of organ growth","termid":"GO:0046621"}


id: PBO:0047405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 43","termid":"PBO:0047405"}


id: GO:0061939
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that mediates the transfer of information from one cell to another using c-di-GMP as the signal.","definition_xrefs":["PMID:22864416","PMID:28057864"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling","termid":"GO:0007267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"c-di-GMP signaling","synonyms":[{"name":"3',5'-cyclic di-GMP signaling","type":"exact"},{"name":"cyclic di-(3':5')-guanosine monophosphate signaling","type":"exact"},{"name":"cyclic di-GMP signaling","type":"exact"},{"name":"cyclic diguanylate signaling","type":"exact"}],"termid":"GO:0061939"}


id: GO:0060589
data:
  {"annotated_genes":["SJAG_04203","SJAG_04943","SJAG_04391","SJAG_04283","SJAG_01699","SJAG_04982","SJAG_03089","SJAG_00289","SJAG_01319","SJAG_02248","SJAG_01011","SJAG_02486","SJAG_02539","SJAG_04462","SJAG_02063","SJAG_05346","SJAG_05023","SJAG_00143","SJAG_04284","SJAG_03581","SJAG_00807","SJAG_02277","SJAG_01030","SJAG_00864","SJAG_02027","SJAG_04074","SJAG_03600","SJAG_02231","SJAG_04400","SJAG_03678","SJAG_04491","SJAG_04837","SJAG_02004","SJAG_05184","SJAG_03246","SJAG_01695","SJAG_01025","SJAG_02307","SJAG_01048","SJAG_02368","SJAG_02819","SJAG_02422","SJAG_01184","SJAG_00551","SJAG_03153","SJAG_03748","SJAG_04522","SJAG_03836","SJAG_00338","SJAG_01415","SJAG_04910","SJAG_01114","SJAG_04080","SJAG_01386","SJAG_02012","SJAG_04776","SJAG_04771","SJAG_01600","SJAG_03268","SJAG_02278","SJAG_01576","SJAG_02493","SJAG_03704","SJAG_02529","SJAG_02645","SJAG_00858","SJAG_03142","SJAG_00467","SJAG_04724","SJAG_03338","SJAG_02520","SJAG_02765","SJAG_00028","SJAG_00064","SJAG_03655","SJAG_03021","SJAG_03002","SJAG_02390","SJAG_04010","SJAG_04765","SJAG_02379","SJAG_03488","SJAG_03085","SJAG_00990","SJAG_02160","SJAG_01659","SJAG_00216","SJAG_01309","SJAG_00092","SJAG_00824","SJAG_04615","SJAG_02833","SJAG_00514","SJAG_00801","SJAG_06588","SJAG_03361","SJAG_02831","SJAG_00991","SJAG_05210","SJAG_03705","SJAG_04548","SJAG_04464","SJAG_04733","SJAG_01526","SJAG_04013","SJAG_04653","SJAG_04938","SJAG_04498","SJAG_02666","SJAG_02471"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99574,91934],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005092"},{"annotations":[91008,98501,112054,113140,92620,101197,101088,91483,101439,101317,103070,90043,106870,106980,89395,91935,94102,94126,90245,102875,103425,108002,107479,96389,101374,83654,87340,110264,113735,84584,64131,90244,102497,105443,95719,85328,89230,89292,91099,103643,92166,107388,106129,112614,69638,65001,88912,94931,89229,103174,89387,105613,111010,91015,94894],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005096"},{"annotations":[112323],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005095"},{"annotations":[112046,92342,87174,102697,113492],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030695"},{"annotations":[96553,83633,90117,90654,93383,74807,88194,91064,93830,103018,103980,106139,90392,87274,102434,107038,95163,109959,93879,110003,110004,110737,92387,92733,94038,88842,95885,111537,89934,87556,104335,111812,84175,93792,95886,112518,92120,113885,94512,105124,110636,113899,110814,106812,96552,106034,106700,73712,85975,101160],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005085"},{"annotations":[89567],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005093"},{"annotations":[95585,106824],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005094"}]},"cv_name":"molecular_function","definition":"Binds to and modulates the activity of an NTPase.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme regulator 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id: GO:0044818
data:
  {"annotated_genes":["SJAG_01076","SJAG_01605","SJAG_04287","SJAG_02098","SJAG_04671","SJAG_02074","SJAG_01680","SJAG_02266","SJAG_00364","SJAG_00640","SJAG_02771","SJAG_03160","SJAG_01873","SJAG_01429","SJAG_01146","SJAG_03695","SJAG_02563","SJAG_01205","SJAG_05373","SJAG_01044","SJAG_03942","SJAG_03927","SJAG_02576","SJAG_01010","SJAG_03026"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96585,99371,85222,103862,90010,108055,95408,90032,113276,88598,102635,112817,87508,113107,105337,95242,112074],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033314"},{"annotations":[87509,90012,86306,95409,105338,110276,113026,85223,107750,84660,102636,96586,87867,97101,113703],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007095"}]},"cv_name":"biological_process","definition":"A cell cycle checkpoint that detects and negatively regulates progression from G2 to M phase as part of a mitotic cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic cell cycle checkpoint signaling","termid":"GO:0007093"},{"relation_name":"is_a","term_name":"negative regulation of G2/M transition of mitotic cell cycle","termid":"GO:0010972"}],"gene_count":25,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_00640":null,"SJAG_01010":null,"SJAG_01044":null,"SJAG_01076":null,"SJAG_01146":null,"SJAG_01205":null,"SJAG_01429":null,"SJAG_01605":null,"SJAG_01680":null,"SJAG_01873":null,"SJAG_02074":null,"SJAG_02098":null,"SJAG_02266":null,"SJAG_02563":null,"SJAG_02576":null,"SJAG_02771":null,"SJAG_03026":null,"SJAG_03160":null,"SJAG_03695":null,"SJAG_03927":null,"SJAG_03942":null,"SJAG_04287":null,"SJAG_04671":null,"SJAG_05373":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0044772"},{"rel_name":"regulates","termid":"GO:0044772"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0044772","GO:0023052","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"mitotic G2/M transition checkpoint","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0044818","terms_by_termid":{"GO:0007095":null,"GO:0033314":null}}


id: GO:0048146
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"is_a","term_name":"regulation of fibroblast proliferation","termid":"GO:0048145"},{"relation_name":"positively_regulates","term_name":"fibroblast proliferation","termid":"GO:0048144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of fibroblast proliferation","synonyms":[{"name":"activation of fibroblast proliferation","type":"narrow"},{"name":"stimulation of fibroblast proliferation","type":"narrow"},{"name":"up regulation of fibroblast proliferation","type":"exact"},{"name":"up-regulation of fibroblast proliferation","type":"exact"},{"name":"upregulation of fibroblast proliferation","type":"exact"}],"termid":"GO:0048146"}


id: PBO:0002367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved gene with no initiator methionine","termid":"PBO:0002367"}


id: PBO:0076197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO2 pseudogene 6","termid":"PBO:0076197"}


id: GO:0035944
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of a perforin protein due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:rv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"production of molecular mediator of immune response","termid":"GO:0002440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"perforin production","termid":"GO:0035944"}


id: GO:0140764
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A translational repressor activity that binds to a single-stranded small regulatory RNA (either a miRNA or a siRNA) to guide it to its target mRNA.","definition_xrefs":["PMID:27184117","PMID:34117606"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translation repressor activity","termid":"GO:0030371"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0045182"}],"interesting_parent_ids":["GO:0045182","GO:0003674"],"is_obsolete":false,"name":"small RNA binding translational repressor activity","termid":"GO:0140764"}


id: PATO:0001142
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001142 ig d concentration value (obsolete PATO:0001142)","termid":"PATO:0001142"}


id: PBO:0058772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7106","termid":"PBO:0058772"}


id: GO:1900577
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of gerfelin.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol-containing compound catabolic process","termid":"GO:0019614"},{"relation_name":"is_a","term_name":"carboxylic acid catabolic process","termid":"GO:0046395"},{"relation_name":"is_a","term_name":"secondary metabolite catabolic process","termid":"GO:0090487"},{"relation_name":"is_a","term_name":"gerfelin metabolic process","termid":"GO:1900576"},{"relation_name":"is_a","term_name":"ether catabolic process","termid":"GO:1901502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0044281","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"gerfelin catabolic process","synonyms":[{"name":"gerfelin breakdown","type":"exact"},{"name":"gerfelin catabolism","type":"exact"},{"name":"gerfelin degradation","type":"exact"}],"termid":"GO:1900577"}


id: PBO:0050062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLCS intronic transcript 1","termid":"PBO:0050062"}


id: SO:0001560
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that causes the inactivation of a ligand binding site with respect to a reference sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_loss_of_function_variant","termid":"SO:0001559"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inactive_ligand_binding_site","synonyms":[{"name":"inactive ligand binding site","type":"exact"}],"termid":"SO:0001560"}


id: PBO:0039569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 63","termid":"PBO:0039569"}


id: PBO:0043618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COMM domain containing 7","termid":"PBO:0043618"}


id: PBO:0075846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSU72 pseudogene 1","termid":"PBO:0075846"}


id: GO:1990665
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterotetrameric protein complex comprising two Annexin A2 (AnxA2) monomers and two copies of its binding partner, S100 protein p11 (S100A10).","definition_xrefs":["PMID:18799458","GOC:bf","GOC:nc","PMID:23483454","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"AnxA2-p11 complex","synonyms":[{"name":"(A2.p11)2 complex","type":"exact"},{"name":"(p11)2.(AnxA2)2 complex","type":"exact"},{"name":"Annexin A2 tetramer","type":"related"},{"name":"Annexin A2-p11 complex","type":"exact"},{"name":"AnxA2.p11 complex","type":"exact"},{"name":"AnxA2:S100A10 heterotetramer","type":"exact"}],"termid":"GO:1990665"}


id: PBO:0090389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribokinase-like, unknown specificity","termid":"PBO:0090389"}


id: GO:0019237
data:
  {"annotated_genes":["SJAG_01745","SJAG_03217","SJAG_00307","SJAG_03183"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87428,98114,101508,112486],"is_not":false,"summary":null,"term":"GO:0019237"}]},"cv_name":"molecular_function","definition":"Binding to a centromere, a region of chromosome where the spindle fibers attach during mitosis and meiosis.","definition_xrefs":["SO:0000577","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sequence-specific double-stranded DNA binding","termid":"GO:1990837"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00307":null,"SJAG_01745":null,"SJAG_03183":null,"SJAG_03217":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0005488","GO:0003677","GO:0003674"],"is_obsolete":false,"name":"centromeric DNA binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"centromere binding","type":"exact"}],"termid":"GO:0019237","terms_by_termid":{"GO:0019237":null}}


id: GO:0160030
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of pollen intine, the inner layer of the pollen wall. The reticulate pollen wall pattern consists of two layers, exine and intine.","definition_xrefs":["PMID:35498668"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pollen wall assembly","termid":"GO:0010208"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"pollen intine formation","termid":"GO:0160030"}


id: PBO:0057734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1322","termid":"PBO:0057734"}


id: FYPO:0006917
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the metaphase/anaphase transition of mitosis begins at the normal (i.e. indistinguishable from wild type) time relative to other cell cycle events.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal regulation of mitotic cell cycle","termid":"FYPO:0001928"},{"relation_name":"is_a","term_name":"normal mitotic cell cycle process","termid":"FYPO:0002741"},{"relation_name":"is_a","term_name":"normal cell cycle phase transition","termid":"FYPO:0006916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal onset of mitotic metaphase/anaphase transition","synonyms":[{"name":"normal duration of metaphase during mitosis","type":"related"},{"name":"normal duration of mitotic metaphase","type":"related"},{"name":"normal onset of metaphase/anaphase transition of mitotic nuclear division","type":"exact"},{"name":"normal timing of mitotic metaphase/anaphase transition","type":"related"}],"termid":"FYPO:0006917"}


id: GO:0032937
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex formed by the association of sterol regulatory element binding protein (SREBP), SREBP-cleavage-activating protein (SCAP), and an Insig protein (Insig-1 or Insig-2) in the ER membrane.","definition_xrefs":["PMID:12923525"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"is_a","term_name":"endoplasmic reticulum protein-containing complex","termid":"GO:0140534"},{"relation_name":"part_of","term_name":"endoplasmic reticulum membrane","termid":"GO:0005789"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005789"},{"rel_name":"part_of","termid":"GO:0005783"}],"interesting_parent_ids":["GO:0005783","GO:0005575","GO:0032991","GO:0005737","GO:0005789"],"is_obsolete":false,"name":"SREBP-SCAP-Insig complex","termid":"GO:0032937"}


id: PR:Q09858
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nnf1 gene.","definition_xrefs":["UniProtKB:Q09858","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein nnf1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29E6.04","synonyms":[{"name":"NMS complex subunit nnf1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-nnf1","type":"exact"}],"termid":"PR:Q09858"}


id: PBO:0045343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"docking protein 3","termid":"PBO:0045343"}


id: MOD:01123
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because redundant and identical to MOD:01123. Remap to MOD:01123.","definition_xrefs":["DeltaMass:0"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:01123 monoiodated tyrosine (obsolete MOD:01123)","termid":"MOD:01123"}


id: GO:0099629
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A network of proteins within and adjacent to the postsynaptic membrane of a symmetric synapse, consisting of anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components that spatially and functionally organize the neurotransmitter receptors at the synapse. This structure is not as thick or electron dense as the postsynaptic densities found in asymmetric synapses.","definition_xrefs":["PMID:18832033"],"direct_ancestors":[{"relation_name":"is_a","term_name":"postsynaptic specialization","termid":"GO:0099572"},{"relation_name":"part_of","term_name":"symmetric synapse","termid":"GO:0032280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"postsynaptic specialization of symmetric synapse","synonyms":[{"name":"postsynaptic density of inhibitory synapse","type":"exact"}],"termid":"GO:0099629"}


id: GO:0032001
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer an alpha-D-glucosyl residue in a (1->4)-alpha-D-glucan to the primary hydroxy group of glucose, free or combined in a (1->4)-alpha-D-glucan.","definition_xrefs":["EC:2.4.1.24"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosyltransferase activity","termid":"GO:0046527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"1,4-alpha-glucan 6-alpha-glucosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.24-RXN"],"synonyms":[{"name":"1,4-alpha-D-glucan 6-alpha-D-glucosyltransferase activity","type":"exact"},{"name":"1,4-alpha-D-glucan:1,4-alpha-D-glucan(D-glucose) 6-alpha-D-glucosyltransferase activity","type":"exact"},{"name":"D-glucosyltransferase","type":"broad"},{"name":"T-enzyme","type":"narrow"},{"name":"oligoglucan-branching glycosyltransferase activity","type":"related"}],"termid":"GO:0032001"}


id: GO:0043617
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sucrose.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to starvation","termid":"GO:0009267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to sucrose starvation","termid":"GO:0043617"}


id: GO:0103020
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-deoxy-D-xylulose + ATP = H+ + 1-deoxy-D-xylulose 5-phosphate + ADP.","definition_xrefs":["GOC:pz","PMID:11168365","PMID:16920870"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"1-deoxy-D-xylulose kinase activity","secondary_identifiers":["MetaCyc:RXN0-382","RHEA:27990"],"termid":"GO:0103020"}


id: GO:0051747
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: methyl-dCpdG DNA + H2O = dCpdG DNA + methanol. This reaction is the hydrolytic removal of the methyl group on the 5 position of cytosine in DNA.","definition_xrefs":["PMID:10050851"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity","termid":"GO:0016787"},{"relation_name":"is_a","term_name":"DNA demethylase activity","termid":"GO:0035514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0140097"],"is_obsolete":false,"name":"cytosine C-5 DNA demethylase activity","synonyms":[{"name":"DNA demethylase activity","type":"broad"},{"name":"DNA methyltransferase activity acting on cytosine C-5","type":"exact"},{"name":"hydrolytic DNA demethylase activity","type":"broad"}],"termid":"GO:0051747"}


id: PBO:0091101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-W ortholog","termid":"PBO:0091101"}


id: GO:0044826
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The insertion into a host genome of viral DNA, usually by the action of an integrase enzyme. Once integrated, the provirus persists in the host cell and serves as a template for the transcription of viral genes and replication of the viral genome, leading to the production of new viruses.","definition_xrefs":["PMID:19091057"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"},{"relation_name":"part_of","term_name":"viral life cycle","termid":"GO:0019058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral genome integration into host DNA","synonyms":[{"name":"viral genome integration","type":"exact"}],"termid":"GO:0044826"}


id: GO:0043453
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of an alkyne, any acyclic branched or unbranched hydrocarbon (compound composed only of carbon and hydrogen) having a carbon-carbon triple bond and the general formula CnH2n-2.","definition_xrefs":["GOC:krc","GOC:jl","Wikipedia:Alkyne"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular alkyne metabolic process","termid":"GO:0043452"},{"relation_name":"is_a","term_name":"cellular biosynthetic process","termid":"GO:0044249"},{"relation_name":"is_a","term_name":"acetylenic compound biosynthetic process","termid":"GO:0120247"},{"relation_name":"is_a","term_name":"hydrocarbon biosynthetic process","termid":"GO:0120251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"alkyne biosynthetic process","synonyms":[{"name":"alkyne anabolism","type":"exact"},{"name":"alkyne biosynthesis","type":"exact"},{"name":"alkyne formation","type":"exact"},{"name":"alkyne synthesis","type":"exact"}],"termid":"GO:0043453"}


id: PBO:0061103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nemo like kinase","termid":"PBO:0061103"}


id: PBO:0061389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophosmin 1 pseudogene 49","termid":"PBO:0061389"}


id: GO:0051137
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer T cell differentiation.","definition_xrefs":["ISBN:0781735149","PMID:12154375","PMID:9133426"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of alpha-beta T cell differentiation","termid":"GO:0046639"},{"relation_name":"is_a","term_name":"regulation of NK T cell differentiation","termid":"GO:0051136"},{"relation_name":"negatively_regulates","term_name":"NK T cell differentiation","termid":"GO:0001865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"negative regulation of NK T cell differentiation","synonyms":[{"name":"down regulation of NK T cell differentiation","type":"exact"},{"name":"down-regulation of NK T cell differentiation","type":"exact"},{"name":"downregulation of NK T cell differentiation","type":"exact"},{"name":"inhibition of NK T cell differentiation","type":"narrow"},{"name":"negative regulation of NK T cell development","type":"related"},{"name":"negative regulation of NK T lymphocyte differentiation","type":"exact"},{"name":"negative regulation of NK T-cell differentiation","type":"exact"},{"name":"negative regulation of NK T-lymphocyte differentiation","type":"exact"},{"name":"negative regulation of NKT cell differentiation","type":"exact"},{"name":"negative regulation of NT cell differentiation","type":"exact"},{"name":"negative regulation of natural T cell differentiation","type":"exact"},{"name":"negative regulation of natural killer T cell differentiation","type":"exact"}],"termid":"GO:0051137"}


id: PBO:0071370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L29 pseudogene 29","termid":"PBO:0071370"}


id: GO:0004672
data:
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id: PBO:0081586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 513","termid":"PBO:0081586"}


id: PBO:0087048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L22A; required for translation of long 5' UTR of IME1 mRNA and meiotic entry; required for the oxidative stress response, pseudohyphal and invasive growth; homologous to mammalian ribosomal protein L22, no bacterial homolog; RPL22A has a paralog, RPL22B, that arose from the whole genome duplication","termid":"PBO:0087048"}


id: GO:0035318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Extrusion of a cellular projection from the apical membrane of an epithelial cell in an imaginal disc-derived wing. Outgrowth initiates approximately 35 hours after puparium formation from the distal side of the cell, and at this stage the cellular extension is termed a prehair.","definition_xrefs":["PMID:8947551","GOC:mtg_sensu","PMID:11064425"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-embryonic animal morphogenesis","termid":"GO:0009886"},{"relation_name":"is_a","term_name":"cell projection morphogenesis","termid":"GO:0048858"},{"relation_name":"part_of","term_name":"imaginal disc-derived wing hair organization","termid":"GO:0035317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"imaginal disc-derived wing hair outgrowth","synonyms":[{"name":"wing hair outgrowth","type":"exact"},{"name":"wing prehair outgrowth","type":"related"}],"termid":"GO:0035318"}


id: PBO:0087365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sporulation-specific homolog of the CDC3/10/11/12 family of genes; meiotic septin expressed at high levels during meiotic divisions and ascospore formation; the yeast CDC3/10/11/12 family is a family of bud neck microfilament genes","termid":"PBO:0087365"}


id: PBO:0042033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 88B","termid":"PBO:0042033"}


id: GO:0102753
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + chlorophyllide b(1-) + 2-trans,6-trans,10-trans-geranylgeranyl diphosphate = geranylgeranyl-chlorophyll b + diphosphoric acid.","definition_xrefs":["EC:2.5.1.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016765"],"is_obsolete":false,"name":"chlorophyllide b:geranyl-geranyl diphosphate geranyl-geranyltransferase activity","secondary_identifiers":["MetaCyc:RXN-7673"],"termid":"GO:0102753"}


id: GO:0010241
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The three successive oxidations of the 4-methyl group of ent-kaurene to form ent-kaur-16-en-19-oate, kaurenoic acid. This process may be carried out entirely by the enzyme ent-kaurene oxidase.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ent-kaurene metabolic process","termid":"GO:0033331"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"ent-kaurene oxidation to kaurenoic acid","synonyms":[{"name":"ent-kaurene oxidation to ent-kaur-16-en-19-oate","type":"exact"},{"name":"ent-kaurene oxidation to ent-kaurenoate","type":"exact"},{"name":"ent-kaurene oxidation to kaurenoic acid by ent-kaurene oxidase","type":"exact"}],"termid":"GO:0010241"}


id: PBO:0046425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EPH receptor A10","termid":"PBO:0046425"}


id: GO:0032135
data:
  {"annotated_genes":["SJAG_02226","SJAG_01419","SJAG_01262","SJAG_00634"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96636,101968,102100],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000404"},{"annotations":[102101],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032138"},{"annotations":[94244],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032141"}]},"cv_name":"molecular_function","definition":"Binding to a double-stranded DNA region containing an insertion or a deletion.","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatched DNA binding","termid":"GO:0030983"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00634":null,"SJAG_01262":null,"SJAG_01419":null,"SJAG_02226":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0003677","GO:0005488"],"is_obsolete":false,"name":"DNA insertion or deletion binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"DNA insertion binding","type":"narrow"},{"name":"insertion binding","type":"exact"}],"termid":"GO:0032135","terms_by_termid":{"GO:0000404":null,"GO:0032138":null,"GO:0032141":null}}


id: PBO:0086988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Repressor of G1 transcription; binds to SCB binding factor (SBF) at SCB target promoters in early G1; dilution of Whi5p concentration during cell growth determines cell size; phosphorylation of Whi5p by the CDK, Cln3p/Cdc28p relieves repression and promoter binding by Whi5, and contributes to both the determination of critical cell size at START and cell fate; periodically expressed in G1","termid":"PBO:0086988"}


id: PBO:0034107
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-surrounded_by","termid":"PBO:0034107"}


id: FYPO:0007311
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 16 of histone H4 in centromere outer repeat regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H4 acetylation at centromere outer repeat during vegetative growth","termid":"FYPO:0002382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0000002","FYPO:0001985","FYPO:0002274","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"increased histone H4-K16 acetylation at centromere outer repeat during vegetative growth","synonyms":[{"name":"increased histone H4-K16 acetylation at centromere otr during vegetative growth","type":"exact"},{"name":"increased histone H4-K16 acetylation at centromere outer repeat during mitotic cell cycle","type":"related"},{"name":"increased histone H4-K16 acetylation at centromeric outer repeat region during vegetative growth","type":"exact"},{"name":"increased histone H4-K16 acetylation at pericentric region during vegetative growth","type":"related"},{"name":"increased histone H4-K16 acetylation at pericentromeric region during vegetative growth","type":"related"},{"name":"increased histone H4K16 acetylation at centromere outer repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0007311"}


id: GO:0051342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cyclic nucleotide phosphodiesterase activity, the catalysis of the reaction: nucleotide 3',5'-cyclic phosphate + H2O = nucleotide 5'-phosphate.","definition_xrefs":["GOC:tb","EC:3.1.4.17","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hydrolase activity","termid":"GO:0051336"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cyclic-nucleotide phosphodiesterase activity","synonyms":[{"name":"3',5' cyclic nucleotide phosphodiesterase regulator","type":"exact"},{"name":"3',5'-cyclic-AMP phosphodiesterase regulator","type":"narrow"},{"name":"cAMP phosphodiesterase regulator","type":"narrow"},{"name":"phosphodiesterase regulator","type":"related"},{"name":"regulation of 3',5' cyclic nucleotide phosphodiesterase activity","type":"exact"},{"name":"regulation of 3',5'-cyclic-AMP phosphodiesterase activity","type":"narrow"},{"name":"regulation of cAMP phosphodiesterase activity","type":"narrow"},{"name":"regulation of cGMP phosphodiesterase activity","type":"narrow"},{"name":"regulation of cyclic nucleotide phosphodiesterase activity","type":"exact"}],"termid":"GO:0051342"}


id: PBO:0066643
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulating synaptic membrane exocytosis 1","termid":"PBO:0066643"}


id: GO:0102748
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: H+ + geranylgeranyl-chlorophyll a + NADPH = dihydrogeranylgeranyl-chlorophyll a + NADP.","definition_xrefs":["GOC:pz","EC:1.3.1.-"],"gene_count":0,"genotype_count":0,"name":"obsolete geranylgeranyl-chlorophyll a reductase activity (obsolete GO:0102748)","secondary_identifiers":["MetaCyc:RXN-7664"],"termid":"GO:0102748"}


id: MOD:00105
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to L-serine amide.","definition_xrefs":["PubMed:743209","RESID:AA0096"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C1-amidated residue","termid":"MOD:00883"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-serine amide","synonyms":[{"name":"(2S)-2-amino-3-hydroxypropanamide","type":"exact"},{"name":"L-serine amide","type":"exact"},{"name":"MOD_RES Serine amide","type":"exact"},{"name":"SerN","type":"exact"},{"name":"amidated L-serine","type":"exact"},{"name":"serinamide","type":"exact"}],"termid":"MOD:00105"}


id: PBO:0029119
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mononucleate_cell_with_increased_DNA_content_during_stationary_phase","termid":"PBO:0029119"}


id: PBO:0049968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIG1 hypoxia inducible domain family member 1A pseudogene 14","termid":"PBO:0049968"}


id: GO:0060449
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a bud in the lung grows out from the point where it is formed.","definition_xrefs":["GOC:dph","GOC:mtg_lung"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branch elongation of an epithelium","termid":"GO:0060602"},{"relation_name":"part_of","term_name":"epithelial tube branching involved in lung morphogenesis","termid":"GO:0060441"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bud elongation involved in lung branching","termid":"GO:0060449"}


id: GO:0160149
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: uridine(65) in tRNA = pseudouridine(65) in tRNA.","definition_xrefs":["EC:5.4.99.26"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA pseudouridine synthase activity","termid":"GO:0106029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0140101"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0140101","GO:0140098","GO:0003824"],"is_obsolete":false,"name":"tRNA pseudouridine(65) synthase activity","secondary_identifiers":["RHEA:42536"],"termid":"GO:0160149"}


id: GO:0016692
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O2 + NADH + H+ = 2 H2O + NAD+.","definition_xrefs":["EC:1.11.1.1","RHEA:18509"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peroxidase activity","termid":"GO:0004601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"NADH peroxidase activity","secondary_identifiers":["MetaCyc:NADH-PEROXIDASE-RXN","KEGG_REACTION:R00090"],"synonyms":[{"name":"DPNH peroxidase activity","type":"related"},{"name":"NAD peroxidase activity","type":"related"},{"name":"NADH-peroxidase activity","type":"related"},{"name":"NADH:hydrogen-peroxide oxidoreductase activity","type":"related"},{"name":"diphosphopyridine nucleotide peroxidase activity","type":"related"},{"name":"nicotinamide adenine dinucleotide peroxidase activity","type":"related"}],"termid":"GO:0016692"}


id: GO:0034211
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"GTP dependent catalysis of the reaction: ATP + a protein serine/threonine = ADP + protein serine/threonine phosphate.","definition_xrefs":["GOC:ecd","PMID:17200152"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine kinase activity","termid":"GO:0004674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0004672"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0004672","GO:0140096","GO:0016301"],"is_obsolete":false,"name":"GTP-dependent protein kinase activity","termid":"GO:0034211"}


id: GO:0009384
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + N-acyl-D-mannosamine = ADP + N-acyl-D-mannosamine 6-phosphate.","definition_xrefs":["EC:2.7.1.60"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"},{"relation_name":"is_a","term_name":"carbohydrate kinase activity","termid":"GO:0019200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016301","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"N-acylmannosamine kinase activity","secondary_identifiers":["Reactome:R-HSA-4085028","Reactome:R-HSA-4088322","RHEA:23832","MetaCyc:N-ACYLMANNOSAMINE-KINASE-RXN"],"synonyms":[{"name":"ATP:N-acetylmannosamine 6-phosphotransferase activity","type":"related"},{"name":"ATP:N-acyl-D-mannosamine 6-phosphotransferase activity","type":"related"},{"name":"N-acetylmannosamine kinase activity","type":"related"},{"name":"N-acyl-D-mannosamine kinase activity","type":"related"},{"name":"acetylamidodeoxymannokinase activity","type":"related"},{"name":"acetylmannosamine kinase activity","type":"related"},{"name":"acylaminodeoxymannokinase activity","type":"related"},{"name":"acylmannosamine kinase (phosphorylating)","type":"related"},{"name":"acylmannosamine kinase activity","type":"related"}],"termid":"GO:0009384"}


id: PR:O14202
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug116 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14202"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 116 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC5D6.10c","synonyms":[{"name":"Spom972h-mug116","type":"exact"}],"termid":"PR:O14202"}


id: PBO:0078135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 14/delta variable 4","termid":"PBO:0078135"}


id: FYPO:0004792
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the distance between one or more telomeres and the nuclear envelope is smaller than normal during G2 phase of the mitotic cell cycle.","definition_xrefs":["PMID:22959349","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal telomere-nuclear envelope distance during vegetative growth","termid":"FYPO:0004790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"decreased telomere-nuclear envelope distance during mitotic G2 phase","synonyms":[{"name":"decreased distance between telomeres and nuclear envelope during mitotic G2 phase","type":"exact"},{"name":"decreased telomere-nuclear envelope distance during G2 phase during mitotic cell cycle","type":"related"},{"name":"decreased telomere-nuclear envelope distance during mitotic G2 phase during vegetative growth","type":"exact"},{"name":"reduced telomere-nuclear envelope distance during mitotic G2 phase","type":"exact"}],"termid":"FYPO:0004792"}


id: GO:0019320
data:
  {"annotated_genes":["SJAG_04495","SJAG_00461","SJAG_02107","SJAG_04192","SJAG_03828","SJAG_00027","SJAG_04334","SJAG_02009","SJAG_03903","SJAG_06621","SJAG_06622","SJAG_02369","SJAG_02135","SJAG_00839","SJAG_00605","SJAG_02945","SJAG_03373","SJAG_02796","SJAG_03660","SJAG_01209","SJAG_01310"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101847,105412,105411,94062,105414,91083,101484,99692,105413,104947,100504,104948,104950,105415,105416,104946,112367,101848,101483,104949,94331,101485,104951,104952,90594,99436,105410],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"},{"annotations":[104918],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019388"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of hexose, any monosaccharide with a chain of six carbon atoms in the molecule.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose metabolic process","termid":"GO:0019318"},{"relation_name":"is_a","term_name":"monosaccharide catabolic process","termid":"GO:0046365"}],"gene_count":21,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00461":null,"SJAG_00605":null,"SJAG_00839":null,"SJAG_01209":null,"SJAG_01310":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02369":null,"SJAG_02796":null,"SJAG_02945":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"hexose catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"hexose breakdown","type":"exact"},{"name":"hexose catabolism","type":"exact"},{"name":"hexose degradation","type":"exact"}],"termid":"GO:0019320","terms_by_termid":{"GO:0019388":null,"GO:0061621":null}}


id: GO:0071989
data:
  {"annotated_genes":["SJAG_00918","SJAG_03437","SJAG_02731","SJAG_01775","SJAG_05266","SJAG_01224","SJAG_01211","SJAG_05319","SJAG_05220","SJAG_01371","SJAG_01546"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96569,94685,104905,112928,87065,85848,85244,103530,105913,92840,110114],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990976"}]},"cv_name":"biological_process","definition":"The directed movement of a protein to a specific location at the spindle pole body.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to spindle pole body","termid":"GO:0071988"},{"relation_name":"is_a","term_name":"establishment of protein localization to organelle","termid":"GO:0072594"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00918":null,"SJAG_01211":null,"SJAG_01224":null,"SJAG_01371":null,"SJAG_01546":null,"SJAG_01775":null,"SJAG_02731":null,"SJAG_03437":null,"SJAG_05220":null,"SJAG_05266":null,"SJAG_05319":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"establishment of protein localization to spindle pole body","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"establishment of protein localisation to spindle pole body","type":"exact"}],"termid":"GO:0071989","terms_by_termid":{"GO:1990976":null}}


id: PBO:0001285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal recognition particle subunit Srp21 (predicted)","termid":"PBO:0001285"}


id: FYPO:0003303
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the post-anaphase array of microtubules is present in an abnormal location.","definition_xrefs":["PMID:9348288","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal post-anaphase array","termid":"FYPO:0004316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000054"}],"interesting_parent_ids":["FYPO:0002399","FYPO:0005447","FYPO:0000002","FYPO:0000054","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"mislocalized post-anaphase array","synonyms":[{"name":"mislocalised post-anaphase array","type":"exact"},{"name":"mislocalized PAA","type":"exact"},{"name":"mislocalized post-anaphase array during mitotic cell cycle","type":"related"},{"name":"mislocalized post-anaphase array during vegetative growth","type":"exact"},{"name":"mislocalized post-anaphase microtubule array","type":"exact"}],"termid":"FYPO:0003303"}


id: PBO:0043958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crystallin gamma C","termid":"PBO:0043958"}


id: PBO:0053814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1075","termid":"PBO:0053814"}


id: GO:0007581
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:sgd_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete age-dependent yeast cell size increase (obsolete GO:0007581)","synonyms":[{"name":"age-dependent yeast cell size increase","type":"exact"}],"termid":"GO:0007581"}


id: FYPO:0004930
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of protein degradation is decreased during sporulation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"increased protein level during cellular response to nitrogen starvation","termid":"FYPO:0001219"},{"relation_name":"is_a","term_name":"decreased protein degradation","termid":"FYPO:0002797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002274","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein degradation during sporulation","synonyms":[{"name":"decreased protein catabolic process during sporulation","type":"exact"},{"name":"decreased protein catabolism during sporulation","type":"exact"},{"name":"reduced protein degradation during sporulation","type":"exact"}],"termid":"FYPO:0004930"}


id: GO:0072192
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell in the urothelium. The urothelium is the epithelial tube of the ureter.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation","termid":"GO:0030855"},{"relation_name":"part_of","term_name":"ureter urothelium development","termid":"GO:0072190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ureter epithelial cell differentiation","termid":"GO:0072192"}


id: GO:1990306
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ubiquitin ligase complex consisting of RSP5 and BUL components. It polyubiquinates plasma membrane transporters and permeases, required for their endocytosis and subsequent degradation in the vacuole. BUL1 or BUL2, respectively, bind to the target protein, enabling ubiquitylation by Rsp5. Phosphorylation of BUL proteins results in binding to 14-3-3 proteins, protecting the permeases from down-regulation.","definition_xrefs":["PMID:9931424","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"RSP5-BUL ubiquitin ligase complex","synonyms":[{"name":"RSP5-BUL1 complex","type":"exact"},{"name":"RSP5-BUL2 complex","type":"related"}],"termid":"GO:1990306"}


id: GO:0008765
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: meso-2,6-diaminopimelate + ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate = ADP + 2 H+ + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminoheptanedioate.","definition_xrefs":["EC:6.3.2.13","RHEA:23676"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity","secondary_identifiers":["MetaCyc:UDP-NACMURALGLDAPLIG-RXN","KEGG_REACTION:R02788"],"synonyms":[{"name":"MurE synthetase activity","type":"related"},{"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:(L)-meso-2,6-diaminoheptanedioate gamma-ligase (ADP-forming)","type":"related"},{"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-2,6-diamino-heptanedioate ligase (ADP-forming) activity","type":"related"},{"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate synthetase activity","type":"related"},{"name":"UDP-N-acetylmuramyl-tripeptide synthetase activity","type":"related"}],"termid":"GO:0008765"}


id: PBO:0088331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Arf GEF Syt22","termid":"PBO:0088331"}


id: PBO:0066484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RFPL1 antisense RNA 1","termid":"PBO:0066484"}


id: GO:1901392
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transforming growth factor beta1 activation.","definition_xrefs":["GOC:TermGenie","GOC:sl"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transforming growth factor beta1 activation (obsolete GO:1901392)","synonyms":[{"name":"regulation of L-TGF-beta 1 activation","type":"exact"},{"name":"regulation of TGF-beta 1 activation","type":"exact"},{"name":"regulation of TGFB1 activation","type":"exact"},{"name":"regulation of TGFbeta 1 activation","type":"exact"},{"name":"regulation of latent-TGF-beta1 activation","type":"exact"},{"name":"regulation of transforming growth factor-beta1 activation","type":"exact"}],"termid":"GO:1901392"}


id: PBO:0003494
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"facilitates Rhp51 assembly at damage sites independently of Rhp57","termid":"PBO:0003494"}


id: GO:0006510
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The hydrolysis of a peptide bond or bonds within a protein using energy from the hydrolysis of ATP.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete ATP-dependent proteolysis (obsolete GO:0006510)","synonyms":[{"name":"ATP-dependent peptidolysis","type":"exact"},{"name":"ATP-dependent proteolysis","type":"exact"}],"termid":"GO:0006510"}


id: PBO:0003822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BolA domain UV induced protein Uvi31","termid":"PBO:0003822"}


id: FYPO:0000421
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which endocytosis does not occur. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"increased protein level in plasma membrane","termid":"FYPO:0003504"},{"relation_name":"is_a","term_name":"abnormal endocytosis during vegetative growth","termid":"FYPO:0000034"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished endocytosis during vegetative growth","synonyms":[{"name":"abolished actin-mediated endocytosis during vegetative growth","type":"exact"},{"name":"abolished endocytosis during mitotic cell cycle","type":"related"},{"name":"abolished protein internalization during vegetative growth","type":"narrow"},{"name":"absent endocytosis during vegetative growth","type":"exact"},{"name":"endocytosis abolished during vegetative growth","type":"exact"},{"name":"endocytosis: absent during vegetative growth","type":"related"}],"termid":"FYPO:0000421"}


id: GO:0052257
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that involves recognition of a pathogen-associated molecular pattern, and by which an organism activates, maintains or increases the frequency, rate or extent of the innate immune response of a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete pathogen-associated molecular pattern dependent induction by organism of innate immune response of other organism involved in symbiotic interaction (obsolete GO:0052257)","synonyms":[{"name":"MAMP dependent induction of innate immunity of other organism","type":"exact"},{"name":"MAMP-dependent induction of innate immunity of other organism","type":"exact"},{"name":"PAMP dependent induction of innate immunity of other organism","type":"exact"},{"name":"PAMP-dependent induction of innate immunity of other organism","type":"exact"},{"name":"general elicitor dependent induction of innate immunity of other organism","type":"exact"},{"name":"general elicitor-dependent induction of innate immunity of other organism","type":"exact"},{"name":"pathogen-associated molecular pattern dependent induction by organism of innate immunity of other organism during symbiotic interaction","type":"related"},{"name":"pathogen-associated molecular pattern dependent induction by organism of innate immunity of other organism involved in symbiotic interaction","type":"exact"}],"termid":"GO:0052257"}


id: PBO:0041217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C1D nuclear receptor corepressor pseudogene 5","termid":"PBO:0041217"}


id: PBO:0080487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Willebrand factor A domain containing 5B2","termid":"PBO:0080487"}


id: GO:0102707
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: beta-alanine + S-adenosyl-L-methionine = H+ + N-methyl-beta-alanine + S-adenosyl-L-homocysteine.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete S-adenosyl-L-methionine:beta-alanine N-methyltransferase activity (obsolete GO:0102707)","termid":"GO:0102707"}


id: PBO:0045784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enhancer of mRNA decapping 3","termid":"PBO:0045784"}


id: PBO:0005509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynactin complex subunit, dynamitin (predicted)","termid":"PBO:0005509"}


id: PBO:0072314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26","termid":"PBO:0072314"}


id: GO:0070285
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a pigment cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a pigment cell fate.","definition_xrefs":["GOC:cvs"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell development","termid":"GO:0048468"},{"relation_name":"part_of","term_name":"pigment cell differentiation","termid":"GO:0050931"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pigment cell development","termid":"GO:0070285"}


id: GO:0019236
data:
  {"annotated_genes":["SJAG_03209","SJAG_02233","SJAG_03340","SJAG_01978","SJAG_00993","SJAG_00990","SJAG_02923","SJAG_01718","SJAG_01345"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93112,88259,85331,89386,92442,102299],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071507"},{"annotations":[84256,103160],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000750"},{"annotations":[101551],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000749"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00990":null,"SJAG_00993":null,"SJAG_01345":null,"SJAG_01718":null,"SJAG_01978":null,"SJAG_02233":null,"SJAG_02923":null,"SJAG_03209":null,"SJAG_03340":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to pheromone","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pheromone response","type":"exact"}],"termid":"GO:0019236","terms_by_termid":{"GO:0000749":null,"GO:0000750":null,"GO:0071507":null}}


id: PBO:0060385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYT1L antisense RNA 1","termid":"PBO:0060385"}


id: GO:0071954
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of chemokine (C-C motif) ligand 11 (CCL11, also known as eotaxin-1) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["PMID:9600955","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"chemokine (C-C motif) ligand 11 production","synonyms":[{"name":"C-C motif chemokine 11 production","type":"exact"},{"name":"CCL-11 production","type":"exact"},{"name":"CCL11 production","type":"exact"},{"name":"eotaxin production","type":"broad"},{"name":"eotaxin-1 production","type":"exact"}],"termid":"GO:0071954"}


id: GO:1903960
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of anion transmembrane transport.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of monoatomic ion transmembrane transport","termid":"GO:0034766"},{"relation_name":"is_a","term_name":"negative regulation of monoatomic anion transport","termid":"GO:1903792"},{"relation_name":"is_a","term_name":"regulation of monoatomic anion transmembrane transport","termid":"GO:1903959"},{"relation_name":"negatively_regulates","term_name":"monoatomic anion transmembrane transport","termid":"GO:0098656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"negative regulation of anion transmembrane transport","synonyms":[{"name":"down regulation of anion transmembrane transport","type":"exact"},{"name":"down-regulation of anion transmembrane transport","type":"exact"},{"name":"downregulation of anion transmembrane transport","type":"exact"},{"name":"inhibition of anion transmembrane transport","type":"narrow"}],"termid":"GO:1903960"}


id: PBO:0028723
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protein_mislocalized_to_actomyosin_contractile_ring","termid":"PBO:0028723"}


id: GO:0045513
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to interleukin-27.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interleukin-17 binding","termid":"GO:0019975"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"interleukin-27 binding","synonyms":[{"name":"IL-27 binding","type":"exact"}],"termid":"GO:0045513"}


id: GO:0005723
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A small, compact region of heterochromatin located in the middle of the polytene chromosome chromocenter, which undergoes little or no replication during polytenization.","definition_xrefs":["PMID:8878678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pericentric heterochromatin","termid":"GO:0005721"},{"relation_name":"part_of","term_name":"polytene chromosome chromocenter","termid":"GO:0005701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005694","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"alpha-heterochromatin","termid":"GO:0005723"}


id: PR:Q9UUH4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- erg25 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UUH4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylsterol monooxygenase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC630.08c","synonyms":[{"name":"C-4 methylsterol oxidase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-erg25","type":"exact"}],"termid":"PR:Q9UUH4"}


id: PBO:0039741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apolipoprotein L3","termid":"PBO:0039741"}


id: GO:0008330
data:
  {"annotated_genes":["SJAG_03263"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99856],"is_not":false,"summary":null,"term":"GO:0008330"}]},"cv_name":"molecular_function","definition":"Catalysis of the reactions: protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoprotein phosphatase activity","termid":"GO:0004721"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03263":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0004721"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0140096","GO:0016788","GO:0004721","GO:0003674"],"is_obsolete":false,"name":"protein tyrosine/threonine phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0008330","terms_by_termid":{"GO:0008330":null}}


id: PBO:0057010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 101-1","termid":"PBO:0057010"}


id: GO:0047953
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glycerol + NADP+ = glycerone + H+ + NADPH.","definition_xrefs":["EC:1.1.1.156","RHEA:12753"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"glycerol 2-dehydrogenase (NADP+) activity","secondary_identifiers":["KEGG_REACTION:R01039","MetaCyc:GLYCEROL-2-DEHYDROGENASE-NADP+-RXN"],"synonyms":[{"name":"DHA oxidoreductase activity","type":"related"},{"name":"dihydroxyacetone (reduced nicotinamide adenine dinucleotide phosphate) reductase activity","type":"related"},{"name":"dihydroxyacetone reductase (NADPH)","type":"related"},{"name":"dihydroxyacetone reductase activity","type":"related"},{"name":"glycerol:NADP+ 2-oxidoreductase (glycerone-forming)","type":"related"}],"termid":"GO:0047953"}


id: GO:0043568
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of insulin-like growth factor receptor signaling.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of insulin-like growth factor receptor signaling pathway","termid":"GO:0043567"},{"relation_name":"positively_regulates","term_name":"insulin-like growth factor receptor signaling pathway","termid":"GO:0048009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of insulin-like growth factor receptor signaling pathway","synonyms":[{"name":"activation of insulin-like growth factor receptor signaling pathway","type":"narrow"},{"name":"positive regulation of IGF receptor signaling pathway","type":"exact"},{"name":"positive regulation of IGF receptor signalling pathway","type":"exact"},{"name":"positive regulation of insulin-like growth factor receptor signalling pathway","type":"exact"},{"name":"stimulation of insulin-like growth factor receptor signaling pathway","type":"narrow"},{"name":"up regulation of insulin-like growth factor receptor signaling pathway","type":"exact"},{"name":"up-regulation of insulin-like growth factor receptor signaling pathway","type":"exact"},{"name":"upregulation of insulin-like growth factor receptor signaling pathway","type":"exact"}],"termid":"GO:0043568"}


id: PBO:0081209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZKSCAN8 pseudogene 1","termid":"PBO:0081209"}


id: PBO:0066980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 283","termid":"PBO:0066980"}


id: GO:0006023
data:
  {"annotated_genes":["SJAG_04868","SJAG_04728","SJAG_00978","SJAG_03723","SJAG_00442"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84646,84818,98831,84306,100693],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006031"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of aminoglycans, any polymer containing amino groups that consists of more than about 10 monosaccharide residues joined to each other by glycosidic linkages.","definition_xrefs":["GOC:ai","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoglycan metabolic process","termid":"GO:0006022"},{"relation_name":"is_a","term_name":"macromolecule biosynthetic process","termid":"GO:0009059"},{"relation_name":"is_a","term_name":"carbohydrate derivative biosynthetic process","termid":"GO:1901137"},{"relation_name":"is_a","term_name":"organonitrogen compound biosynthetic process","termid":"GO:1901566"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00442":null,"SJAG_00978":null,"SJAG_03723":null,"SJAG_04728":null,"SJAG_04868":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"aminoglycan biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"aminoglycan anabolism","type":"exact"},{"name":"aminoglycan biosynthesis","type":"exact"},{"name":"aminoglycan formation","type":"exact"},{"name":"aminoglycan synthesis","type":"exact"}],"termid":"GO:0006023","terms_by_termid":{"GO:0006031":null}}


id: FYPO:0003897
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An abnormal intracellular mitochondrion distribution phenotype observed in the vegetative growth phase of the life cycle in which mitochondria cluster together more than normal during a cellular response to reactive oxygen species.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial aggregation","termid":"FYPO:0000895"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"mitochondrial aggregation during cellular response to reactive oxygen species","synonyms":[{"name":"aggregated mitochondria during cellular response to reactive oxygen species","type":"narrow"},{"name":"mitochondrial aggregation at cell end during cellular response to reactive oxygen species","type":"related"},{"name":"mitochondrial aggregation at cell tip during cellular response to reactive oxygen species","type":"related"},{"name":"mitochondrial aggregation during cellular response to ROS","type":"exact"},{"name":"mitochondrial aggregation during cellular response to reactive oxygen species during mitotic cell cycle","type":"related"},{"name":"mitochondrial aggregation during cellular response to reactive oxygen species during vegetative growth","type":"exact"}],"termid":"FYPO:0003897"}


id: PBO:0041945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromobox 5 pseudogene 1","termid":"PBO:0041945"}


id: PBO:0087593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the ASTRA complex, involved in chromatin remodeling; telomere length regulator involved in the stability or biogenesis of PIKKs such as TORC1","termid":"PBO:0087593"}


id: PBO:0047841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast proliferation associated lncRNA","termid":"PBO:0047841"}


id: GO:0031945
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving glucocorticoids.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular metabolic process","termid":"GO:0031325"},{"relation_name":"is_a","term_name":"regulation of glucocorticoid metabolic process","termid":"GO:0031943"},{"relation_name":"is_a","term_name":"positive regulation of hormone metabolic process","termid":"GO:0032352"},{"relation_name":"is_a","term_name":"positive regulation of steroid metabolic process","termid":"GO:0045940"},{"relation_name":"positively_regulates","term_name":"glucocorticoid metabolic process","termid":"GO:0008211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"positive regulation of glucocorticoid metabolic process","synonyms":[{"name":"activation of glucocorticoid metabolic process","type":"narrow"},{"name":"positive regulation of glucocorticoid metabolism","type":"exact"},{"name":"stimulation of glucocorticoid metabolic process","type":"narrow"},{"name":"up regulation of glucocorticoid metabolic process","type":"exact"},{"name":"up-regulation of glucocorticoid metabolic process","type":"exact"},{"name":"upregulation of glucocorticoid metabolic process","type":"exact"}],"termid":"GO:0031945"}


id: PR:O59759
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC1020.05 gene.","definition_xrefs":["UniProtKB:O59759","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1020.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1020.05","synonyms":[{"name":"Spom972h-SPCC1020.05","type":"exact"}],"termid":"PR:O59759"}


id: PBO:0076909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor A, mitochondrial pseudogene 1","termid":"PBO:0076909"}


id: PBO:0083547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized ORF YBL095W","termid":"PBO:0083547"}


id: PBO:0075412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPACA7 family member B, pseudogene","termid":"PBO:0075412"}


id: PBO:0044985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAH-box helicase 36","termid":"PBO:0044985"}


id: PBO:0055723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lamin B2","termid":"PBO:0055723"}


id: GO:1903070
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of ER-associated ubiquitin-dependent protein catabolic process.","definition_xrefs":["GOC:rph","GOC:TermGenie","PMID:17872946","GO_REF:0000058"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of ER-associated ubiquitin-dependent protein catabolic process (obsolete GO:1903070)","termid":"GO:1903070"}


id: GO:0023030
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a major histocompatibility complex class Ib molecules via the antigen binding groove.","definition_xrefs":["GOC:vw","GOC:mtg_signal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"MHC class Ib protein binding","termid":"GO:0023029"},{"relation_name":"part_of","term_name":"MHC class Ib protein complex binding","termid":"GO:0023025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"MHC class Ib protein binding, via antigen binding groove","termid":"GO:0023030"}


id: PBO:0086786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; analysis of HA-tagged protein suggests a membrane localization","termid":"PBO:0086786"}


id: PBO:0069173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 426, pseudogene","termid":"PBO:0069173"}


id: GO:0030668
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a dense granule of the type found in apicomplexan parasites.","definition_xrefs":["GOC:mah","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle membrane","termid":"GO:0030659"},{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"},{"relation_name":"part_of","term_name":"merozoite dense granule","termid":"GO:0020026"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005575","GO:0031410","GO:0005737"],"is_obsolete":false,"name":"merozoite dense granule membrane","termid":"GO:0030668"}


id: PBO:0110406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L27a pseudogene 9","termid":"PBO:0110406"}


id: PBO:0065879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB30, member RAS oncogene family","termid":"PBO:0065879"}


id: GO:0046453
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving dipyrrins (pyrromethanes), compounds containing two pyrrole rings linked through a methine, -CH=, group.","definition_xrefs":["PMID:17430001"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organonitrogen compound metabolic process","termid":"GO:1901564"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dipyrrin metabolic process","synonyms":[{"name":"dipyrrin metabolism","type":"exact"}],"termid":"GO:0046453"}


id: GO:0000132
data:
  {"annotated_genes":["SJAG_02695","SJAG_02737"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93042,112954],"is_not":false,"summary":null,"term":"GO:0000132"}]},"cv_name":"biological_process","definition":"A cell cycle process that sets the alignment of mitotic spindle relative to other cellular structures.","definition_xrefs":["GOC:ems"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of mitotic spindle localization","termid":"GO:0040001"},{"relation_name":"is_a","term_name":"establishment of spindle orientation","termid":"GO:0051294"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02695":null,"SJAG_02737":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0007163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007010","GO:0007163","GO:0008150","GO:0000226","GO:0051179","GO:0007049"],"is_obsolete":false,"name":"establishment of mitotic spindle orientation","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0030607","GO:0030609"],"synonyms":[{"name":"establishment of spindle orientation during mitosis","type":"related"},{"name":"establishment of spindle orientation involved in mitotic cell cycle","type":"exact"},{"name":"mitotic spindle orientation","type":"exact"},{"name":"orienting of mitotic spindle","type":"exact"}],"termid":"GO:0000132","terms_by_termid":{"GO:0000132":null}}


id: PBO:0042129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cervical carcinoma expressed PCNA regulatory lncRNA","termid":"PBO:0042129"}


id: PBO:0090558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EKC/KEOPS complex N(6)-L-threonylcarbamoyladenine synthase subunit","termid":"PBO:0090558"}


id: GO:2000543
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of gastrulation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gastrulation","termid":"GO:0010470"},{"relation_name":"is_a","term_name":"positive regulation of embryonic development","termid":"GO:0040019"},{"relation_name":"positively_regulates","term_name":"gastrulation","termid":"GO:0007369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of gastrulation","termid":"GO:2000543"}


id: GO:0090554
data:
  {"annotated_genes":["SJAG_02897","SJAG_01731","SJAG_00669"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90500,94001,96244],"is_not":false,"summary":null,"term":"GO:0090554"}]},"cv_name":"molecular_function","definition":"Catalysis of the movement of phosphatidylcholine from the cytosolic to the exoplasmic leaftlet of a membrane, using energy from the hydrolysis of ATP.","definition_xrefs":["PMID:16452632","GOC:ab","RHEA:38583"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylcholine transporter activity","termid":"GO:0008525"},{"relation_name":"is_a","term_name":"floppase activity","termid":"GO:0140328"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00669":null,"SJAG_01731":null,"SJAG_02897":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140303"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0140303"],"is_obsolete":false,"name":"phosphatidylcholine floppase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ATP-dependent phosphatidylcholine transporter activity","type":"broad"},{"name":"ATPase-coupled phosphatidylcholine transporter activity","type":"broad"},{"name":"phosphatidylcholine floppase activity (cytosolic to exoplasmic leaftlet)","type":"exact"},{"name":"phosphatidylcholine-translocating ATPase activity","type":"broad"}],"termid":"GO:0090554","terms_by_termid":{"GO:0090554":null}}


id: PBO:0089214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal protein, meiotic Mug117","termid":"PBO:0089214"}


id: PBO:0017076
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNase P enzyme-substrate contact points identified using pre-tRNAs with modified bases","termid":"PBO:0017076"}


id: PBO:0068710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 91, pseudogene","termid":"PBO:0068710"}


id: GO:0016605
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection.","definition_xrefs":["GOC:ma","PMID:10944585"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear body","termid":"GO:0016604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005654","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"PML body","synonyms":[{"name":"ND10","type":"exact"},{"name":"PML NB","type":"exact"},{"name":"PML nuclear body","type":"exact"},{"name":"nuclear dot","type":"related"}],"termid":"GO:0016605"}


id: GO:0047492
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: xanthan = oligosaccharide with 4-deoxy-alpha-L-threo-hex-4-enuronosyl end + pyruvylate mannose. This reaction is the eliminative cleavage of the terminal beta-D-mannosyl-beta-D-1,4-glucuronosyl linkage of the side-chain of the polysaccharide xanthan, leaving a 4-deoxy-alpha-L-threo-hex-4-enuronosyl group at the terminus of the side-chain.","definition_xrefs":["EC:4.2.2.12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"xanthan lyase activity","secondary_identifiers":["MetaCyc:4.2.2.12-RXN"],"termid":"GO:0047492"}


id: GO:0055078
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the maintenance of an internal steady state of sodium ions within an organism or cell.","definition_xrefs":["GOC:jid","GOC:ai","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic cation homeostasis","termid":"GO:0055080"},{"relation_name":"is_a","term_name":"inorganic ion homeostasis","termid":"GO:0098771"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098771"}],"interesting_parent_ids":["GO:0098771","GO:0008150"],"is_obsolete":false,"name":"sodium ion homeostasis","termid":"GO:0055078"}


id: PBO:0060746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B1 pseudogene 2","termid":"PBO:0060746"}


id: MOD:02014
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue amino group with a linoloylamino group.","direct_ancestors":[{"relation_name":"is_a","term_name":"N-acylated residue","termid":"MOD:00670"},{"relation_name":"is_a","term_name":"linoloylated residue","termid":"MOD:02015"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N-linoloylated residue","termid":"MOD:02014"}


id: FYPO:0002237
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to cerulenin. Cells stop growing (and may die) at a concentration of cerulenin that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0001985","FYPO:0005447","FYPO:0002683","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to cerulenin","synonyms":[{"name":"hypersensitive to cerulenin","type":"exact"},{"name":"sensitive to cerulenin during mitotic cell cycle","type":"related"},{"name":"sensitive to cerulenin during vegetative growth","type":"exact"}],"termid":"FYPO:0002237"}


id: SO:0001104
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Amino acid involved in the activity of an enzyme.","definition_xrefs":["UniProt:curation_manual","EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino_acid","termid":"SO:0001237"},{"relation_name":"part_of","term_name":"polypeptide_catalytic_motif","termid":"SO:0100019"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"catalytic_residue","secondary_identifiers":["BS:00026"],"synonyms":[{"name":"act_site","type":"related"},{"name":"active site residue","type":"exact"},{"name":"catalytic residue","type":"exact"}],"termid":"SO:0001104"}


id: GO:0080048
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-alpha-D-glucose + phosphate = alpha-D-glucose-1-phosphate + GDP.","definition_xrefs":["PMID:18463094","PMID:17462988"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanylyltransferase activity","termid":"GO:0070568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016779","GO:0003674"],"is_obsolete":false,"name":"GDP-D-glucose phosphorylase activity","secondary_identifiers":["GO:0010474","RHEA:30387","MetaCyc:RXN-12486","EC:2.7.7.78"],"synonyms":[{"name":"GDP:glucose-1-phosphate guanyltransferase activity","type":"exact"},{"name":"glucose-1-phosphate guanylyltransferase (GDP) activity","type":"exact"}],"termid":"GO:0080048"}


id: FYPO:0008204
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell exhibits randomly misoriented actin and myosin II filaments, eventually forming a regular orthogonal actomyosin contractile ring. Although the onset of filaments assembly is not delayed, the cell takes more time complete the formation of an orthogonal actomyosin contractile ring.","direct_ancestors":[{"relation_name":"is_a","term_name":"delayed onset of actomyosin contractile ring assembly","termid":"FYPO:0000729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0000032"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000032","FYPO:0005447","FYPO:0000631","FYPO:0000002","FYPO:0004803","FYPO:0001985"],"is_obsolete":false,"name":"delayed orthogonal actomyosin contractile ring assembly from randomly oriented actomyosin filaments","termid":"FYPO:0008204"}


id: SO:0001231
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A modified RNA base in which guanine is methylated at the 7- position.","definition_xrefs":["RSC:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified_RNA_base_feature","termid":"SO:0000250"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"seven_methylguanine","synonyms":[{"name":"7-methylguanine","type":"exact"},{"name":"seven methylguanine","type":"exact"}],"termid":"SO:0001231"}


id: GO:0018273
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of peptidyl-lysine to form N6-retinal-L-lysine.","definition_xrefs":["RESID:AA0120"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-chromophore linkage via peptidyl-N6-retinal-L-lysine (obsolete GO:0018273)","termid":"GO:0018273"}


id: PBO:0005729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf element Wtf19","termid":"PBO:0005729"}


id: PBO:0059223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maestro heat like repeat family member 5 (gene/pseudogene)","termid":"PBO:0059223"}


id: PBO:0060555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurobeachin like 1","termid":"PBO:0060555"}


id: GO:0002668
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of T cell anergy.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of T cell tolerance induction","termid":"GO:0002665"},{"relation_name":"is_a","term_name":"regulation of T cell anergy","termid":"GO:0002667"},{"relation_name":"is_a","term_name":"negative regulation of lymphocyte anergy","termid":"GO:0002912"},{"relation_name":"negatively_regulates","term_name":"T cell anergy","termid":"GO:0002870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of T cell anergy","synonyms":[{"name":"down regulation of T cell anergy","type":"exact"},{"name":"down-regulation of T cell anergy","type":"exact"},{"name":"downregulation of T cell anergy","type":"exact"},{"name":"inhibition of T cell anergy","type":"narrow"},{"name":"negative regulation of T lymphocyte anergy","type":"exact"},{"name":"negative regulation of T-cell anergy","type":"exact"},{"name":"negative regulation of T-lymphocyte anergy","type":"exact"}],"termid":"GO:0002668"}


id: GO:0071885
data:
  {"annotated_genes":["SJAG_01425","SJAG_00508"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[85999,96663],"is_not":false,"summary":null,"term":"GO:0071885"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine (AdoMet) to the alpha-amino group of the N-terminal amino or imino acid residue of a protein substrate. For example, yeast Tae1p and mammalian family member METTL11A preferentially modify the N-terminal residue of substrates with the N-terminal sequence X-Pro-Lys, where X can be Pro, Ala, or Ser.","definition_xrefs":["PMID:20481588"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein methyltransferase activity","termid":"GO:0008276"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00508":null,"SJAG_01425":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0003674","GO:0140096","GO:0008276","GO:0003824","GO:0016740","GO:0016741"],"is_obsolete":false,"name":"N-terminal protein N-methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:2.1.1.244"],"synonyms":[{"name":"X-Pro-Lys N-terminal methyltransferase","type":"narrow"}],"termid":"GO:0071885","terms_by_termid":{"GO:0071885":null}}


id: PBO:0070654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 25","termid":"PBO:0070654"}


id: PBO:0060234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYB antisense RNA 1","termid":"PBO:0060234"}


id: PR:Q10306
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A citrate synthase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00965","PRO:DNx","PANTHER:PTHR11739:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"citrate synthase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6C3.04","secondary_identifiers":["UniProtKB:Q10306"],"synonyms":[{"name":"Spom972h-CS","type":"exact"}],"termid":"PR:Q10306"}


id: GO:0106260
data:
  {"annotated_genes":["SJAG_01076","SJAG_00768","SJAG_03832","SJAG_00698","SJAG_00871","SJAG_03682","SJAG_03161"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99224,108073,109410,111924,112545,112823],"is_not":false,"summary":null,"term":"GO:0106260"},{"annotations":[107906],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140585"}]},"cv_name":"molecular_function","definition":"Bridging together two regions of a DNA molecule.","definition_xrefs":["PMID:29358048","PMID:30626735"],"direct_ancestors":[{"relation_name":"is_a","term_name":"double-stranded DNA binding","termid":"GO:0003690"},{"relation_name":"is_a","term_name":"molecular adaptor activity","termid":"GO:0060090"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00698":null,"SJAG_00768":null,"SJAG_00871":null,"SJAG_01076":null,"SJAG_03161":null,"SJAG_03682":null,"SJAG_03832":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0060090"}],"interesting_parent_ids":["GO:0060090","GO:0005488","GO:0003677","GO:0003674"],"is_obsolete":false,"name":"DNA-DNA tethering activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0140564"],"synonyms":[{"name":"double-stranded DNA bridging","type":"exact"},{"name":"dsDNA bridging","type":"exact"}],"termid":"GO:0106260","terms_by_termid":{"GO:0106260":null,"GO:0140585":null}}


id: GO:0042302
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The action of a molecule that contributes to the structural integrity of a cuticle.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structural molecule activity","termid":"GO:0005198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005198"}],"interesting_parent_ids":["GO:0003674","GO:0005198"],"is_obsolete":false,"name":"structural constituent of cuticle","termid":"GO:0042302"}


id: PBO:0110987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cis-acting regulatory lncRNA prt, pho1 repressing","termid":"PBO:0110987"}


id: PBO:0044155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTDP1 divergent transcript","termid":"PBO:0044155"}


id: FYPO:0004843
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell has two nuclei and more than one septum, and the septa are grouped together between two compartments, one contains both nuclei.","definition_xrefs":["PomBase:mah","PMID:25203555"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiseptate vegetative cell","termid":"FYPO:0000118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000032","FYPO:0005447","FYPO:0000631","FYPO:0001320"],"is_obsolete":false,"name":"multiseptate vegetative cell with binucleate and anucleate compartments","synonyms":[{"name":"multiseptate cell with binucleate and anucleate compartments during vegetative growth","type":"exact"},{"name":"multiseptate vegetative cell with binucleate and anucleate compartments during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004843"}


id: PBO:0036081
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_histone_H3-K36_methylation_during_vegetative_growth","termid":"PBO:0036081"}


id: FYPO:0001840
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which minichromosomes are lost at a higher frequency than normal during the vegetative growth phase of the life cycle. Minichromosome loss occurs when one or both daughter cells do not inherit copies of a minichromosome from the mother cell, and may result from failure of minichromosome replication or segregation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vegetative cell phenotype","termid":"FYPO:0001320"},{"relation_name":"is_a","term_name":"increased minichromosome loss","termid":"FYPO:0001859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased minichromosome loss during vegetative growth","synonyms":[{"name":"increased minichromosome loss during mitotic cell cycle","type":"related"},{"name":"mitotic minichromosome maintenance defect","type":"related"}],"termid":"FYPO:0001840"}


id: PBO:0084532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the NineTeen Complex (NTC); that contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; null mutant has splicing defect and arrests in G2/M; relocalizes to the cytosol in response to hypoxia; homologs in human and C. elegans","termid":"PBO:0084532"}


id: PBO:0090607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA complex/transcription factor TFIID complex histone H4-like subunit Taf6","termid":"PBO:0090607"}


id: RO:0002472
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relationship between a piece of evidence a and some entity b, where b is  an information content entity, material entity or process, and \\nthe a supports either the existence of b, or the truth value of b.","direct_ancestors":[{"relation_name":"is_a","term_name":"related_via_evidence_or_inference_to","termid":"RO:0002616"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_evidence_for","termid":"RO:0002472"}


id: PBO:0042256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperonin containing TCP1 subunit 3","termid":"PBO:0042256"}


id: PBO:0043977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CSAG family member 3","termid":"PBO:0043977"}


id: PBO:0000808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PMT family","termid":"PBO:0000808"}


id: GO:0000767
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The change in form (cell shape and size) that occurs during sexual reproduction in order to facilitate direct contact between the compatible mating types.","definition_xrefs":["GOC:elh"],"gene_count":0,"genotype_count":0,"name":"obsolete cell morphogenesis involved in conjugation (obsolete GO:0000767)","termid":"GO:0000767"}


id: GO:1900948
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of isoprene biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular biosynthetic process","termid":"GO:0031327"},{"relation_name":"is_a","term_name":"negative regulation of lipid biosynthetic process","termid":"GO:0051055"},{"relation_name":"is_a","term_name":"negative regulation of olefin biosynthetic process","termid":"GO:1900912"},{"relation_name":"is_a","term_name":"negative regulation of isoprene metabolic process","termid":"GO:1900945"},{"relation_name":"is_a","term_name":"regulation of isoprene biosynthetic process","termid":"GO:1900947"},{"relation_name":"negatively_regulates","term_name":"isoprene biosynthetic process","termid":"GO:0043612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"negative regulation of isoprene biosynthetic process","synonyms":[{"name":"down regulation of 2-methyl-1,3-butadiene biosynthesis","type":"exact"},{"name":"down regulation of 2-methyl-1,3-butadiene biosynthetic process","type":"exact"},{"name":"down regulation of hemiterpene biosynthesis","type":"exact"},{"name":"down regulation of hemiterpene biosynthetic process","type":"exact"},{"name":"down regulation of isoprene biosynthetic process","type":"exact"},{"name":"down-regulation of 2-methyl-1,3-butadiene biosynthesis","type":"exact"},{"name":"down-regulation of 2-methyl-1,3-butadiene biosynthetic process","type":"exact"},{"name":"down-regulation of hemiterpene biosynthesis","type":"exact"},{"name":"down-regulation of hemiterpene biosynthetic process","type":"exact"},{"name":"down-regulation of isoprene biosynthetic process","type":"exact"},{"name":"downregulation of 2-methyl-1,3-butadiene biosynthesis","type":"exact"},{"name":"downregulation of 2-methyl-1,3-butadiene biosynthetic process","type":"exact"},{"name":"downregulation of hemiterpene biosynthesis","type":"exact"},{"name":"downregulation of hemiterpene biosynthetic process","type":"exact"},{"name":"downregulation of isoprene biosynthetic process","type":"exact"},{"name":"inhibition of 2-methyl-1,3-butadiene biosynthesis","type":"narrow"},{"name":"inhibition of 2-methyl-1,3-butadiene biosynthetic process","type":"narrow"},{"name":"inhibition of hemiterpene biosynthesis","type":"narrow"},{"name":"inhibition of hemiterpene biosynthetic process","type":"narrow"},{"name":"inhibition of isoprene biosynthetic process","type":"narrow"},{"name":"negative regulation of 2-methyl-1,3-butadiene biosynthesis","type":"exact"},{"name":"negative regulation of 2-methyl-1,3-butadiene biosynthetic process","type":"exact"},{"name":"negative regulation of hemiterpene biosynthesis","type":"exact"},{"name":"negative regulation of hemiterpene biosynthetic process","type":"exact"}],"termid":"GO:1900948"}


id: PBO:0057380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548av","termid":"PBO:0057380"}


id: PBO:0027503
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_oligomycin","termid":"PBO:0027503"}


id: PBO:0080776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XK related 7","termid":"PBO:0080776"}


id: PBO:0043912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CRLF3 pseudogene 2","termid":"PBO:0043912"}


id: PBO:0027970
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_reactive_oxygen_species_level_during_nitrogen_starvation","termid":"PBO:0027970"}


id: PBO:0039539
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 36C","termid":"PBO:0039539"}


id: GO:0015259
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. This term was not defined before being made obsolete.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport"],"gene_count":0,"genotype_count":0,"name":"obsolete glutamate channel activity (obsolete GO:0015259)","synonyms":[{"name":"glutamate channel activity","type":"exact"}],"termid":"GO:0015259"}


id: PBO:0017087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial glutamyl-tRNA(Gln) amidotransferase complex subunit Gtf1 (predicted)","termid":"PBO:0017087"}


id: PBO:0041797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caspase recruitment domain family member 6","termid":"PBO:0041797"}


id: GO:0031363
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of an amino group from the N-terminal amino acid residue of a protein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal protein amino acid modification","termid":"GO:0031365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"N-terminal protein amino acid deamination","termid":"GO:0031363"}


id: GO:1900722
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein adenylylation.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein modification process","termid":"GO:0031399"},{"relation_name":"regulates","term_name":"protein adenylylation","termid":"GO:0018117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of protein adenylylation","synonyms":[{"name":"regulation of protein AMPylation","type":"exact"},{"name":"regulation of protein adenylation","type":"exact"},{"name":"regulation of protein amino acid adenylylation","type":"exact"}],"termid":"GO:1900722"}


id: FYPO:0004100
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce an inviable cell that does not divide, is elongated, and contains a nucleus with abnormal morphology.","definition_xrefs":["PMID:7957061","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"abnormal nuclear morphology during vegetative growth","termid":"FYPO:0000062"},{"relation_name":"is_a","term_name":"abnormal nuclear morphology during vegetative growth","termid":"FYPO:0000062"},{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division, elongated cell","termid":"FYPO:0004603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0002403"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0002403","FYPO:0000004"],"is_obsolete":false,"name":"inviable after spore germination, without cell division, elongated cell with abnormal nuclear morphology","synonyms":[{"name":"inviable following spore germination, without cell division, elongated cell with abnormal chromosome morphology","type":"exact"},{"name":"inviable germinated spore, without cell division, elongated cell with abnormal chromosome morphology","type":"exact"},{"name":"lethal after spore germination, without cell division, elongated cell with abnormal nuclear morphology","type":"exact"}],"termid":"FYPO:0004100"}


id: GO:0002434
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process directed at removing immune complexes from the body. Immune complexes are clusters of antibodies bound to antigen, to which complement may also be fixed, and which may precipitate or remain in solution.","definition_xrefs":["GO_REF:0000022","GOC:add","ISBN:068340007X"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune effector process","termid":"GO:0002252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"immune complex clearance","termid":"GO:0002434"}


id: PBO:0090539
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA translocase Rhp16b","termid":"PBO:0090539"}


id: PBO:0091685
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translated non-conserved ORF in low complexity region","termid":"PBO:0091685"}


id: PBO:0068293
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho family GTPase 2","termid":"PBO:0068293"}


id: FYPO:0000230
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cytokinesis phenotype observed in the vegetative growth phase of the life cycle in which the assembly and distribution of actin filaments and associated proteins does not occur normally, resulting in the formation of an abnormal actomyosin contractile ring in which actin is absent or mislocalized.","definition_xrefs":["PomBase:mah","GO:2000689","PMID:19713940"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cytokinesis","termid":"FYPO:0000032"},{"relation_name":"is_a","term_name":"abnormal actin filament organization during vegetative growth","termid":"FYPO:0000727"},{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring organization","termid":"FYPO:0004738"},{"relation_name":"part_of","term_name":"abnormal actomyosin contractile ring assembly","termid":"FYPO:0000161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0004803"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000631","FYPO:0005447","FYPO:0004803","FYPO:0001985","FYPO:0000002","FYPO:0000032"],"is_obsolete":false,"name":"abnormal actomyosin contractile ring actin filament organization","synonyms":[{"name":"abnormal actomyosin contractile ring actin filament organisation","type":"exact"},{"name":"abnormal actomyosin contractile ring actin filament organization during mitotic cell cycle","type":"related"},{"name":"abnormal actomyosin contractile ring actin filament organization during vegetative growth","type":"exact"},{"name":"abnormal cytokinetic contractile ring actin filament organization","type":"exact"},{"name":"abnormal mitotic contractile ring actin filament organization","type":"exact"}],"termid":"FYPO:0000230"}


id: GO:0051738
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to xanthophylls, any of several neutral yellow to orange carotenoid pigments containing oxygen.","definition_xrefs":["ISBN:0122146743"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprenoid binding","termid":"GO:0019840"},{"relation_name":"is_a","term_name":"pigment binding","termid":"GO:0031409"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0008289","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"xanthophyll binding","termid":"GO:0051738"}


id: MOD:00266
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively forms a peptide bond between a C-terminal L-glutamic acid residue and one or more free L-glutamic acid molecules to form N-(L-glutamyl)-poly-L-glutamic acid.","definition_xrefs":["RESID:AA0261","PubMed:328274","PubMed:2570347"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-glutamic acid residue","termid":"MOD:00906"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-L-glutamyl-poly-L-glutamic acid","termid":"MOD:00266"}


id: GO:0060609
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process that contributes to the hollowing out of an epithelial rod or cord to form the central hole in a tube.","definition_xrefs":["GOC:dph","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic process involved in morphogenesis","termid":"GO:0060561"},{"relation_name":"part_of","term_name":"tube lumen cavitation","termid":"GO:0060605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"apoptotic process involved in tube lumen cavitation","synonyms":[{"name":"apoptosis involved in tube lumen cavitation","type":"narrow"}],"termid":"GO:0060609"}


id: GO:1903776
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of double-strand break repair via single-strand annealing, removal of nonhomologous ends.","definition_xrefs":["PMID:25203555","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of double-strand break repair","termid":"GO:2000779"},{"relation_name":"regulates","term_name":"double-strand break repair via single-strand annealing, removal of nonhomologous ends","termid":"GO:0000736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0006281"],"is_obsolete":false,"name":"regulation of double-strand break repair via single-strand annealing, removal of nonhomologous ends","termid":"GO:1903776"}


id: PBO:0054599
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2003","termid":"PBO:0054599"}


id: PBO:0059581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metastasis associated 1 family member 3","termid":"PBO:0059581"}


id: PBO:0001129
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae GDA1","termid":"PBO:0001129"}


id: GO:1903060
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein lipidation.","definition_xrefs":["GOC:rph","GOC:TermGenie","GO_REF:0000058","PMID:21909394"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of macromolecule biosynthetic process","termid":"GO:0010558"},{"relation_name":"is_a","term_name":"negative regulation of protein modification process","termid":"GO:0031400"},{"relation_name":"is_a","term_name":"negative regulation of lipoprotein metabolic process","termid":"GO:0050748"},{"relation_name":"is_a","term_name":"regulation of protein lipidation","termid":"GO:1903059"},{"relation_name":"negatively_regulates","term_name":"protein lipidation","termid":"GO:0006497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein lipidation","synonyms":[{"name":"down regulation of lipid:protein modification","type":"exact"},{"name":"down regulation of protein amino acid lipidation","type":"exact"},{"name":"down regulation of protein lipidation","type":"exact"},{"name":"down-regulation of lipid:protein modification","type":"exact"},{"name":"down-regulation of protein amino acid lipidation","type":"exact"},{"name":"down-regulation of protein lipidation","type":"exact"},{"name":"downregulation of lipid:protein modification","type":"exact"},{"name":"downregulation of protein amino acid lipidation","type":"exact"},{"name":"downregulation of protein lipidation","type":"exact"},{"name":"inhibition of lipid:protein modification","type":"narrow"},{"name":"inhibition of protein amino acid lipidation","type":"narrow"},{"name":"inhibition of protein lipidation","type":"narrow"},{"name":"negative regulation of lipid:protein modification","type":"exact"},{"name":"negative regulation of protein amino acid lipidation","type":"exact"}],"termid":"GO:1903060"}


id: PBO:0039205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldo-keto reductase family 1 member B1 pseudogene 8","termid":"PBO:0039205"}


id: GO:0023052
data:
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id: PBO:0088589
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id: PBO:0031900
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id: PBO:0111781
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id: FYPO:0005581
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id: GO:0043101
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id: GO:1900865
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id: GO:0042122
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id: MOD:01931
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id: PBO:0069097
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id: PBO:0065880
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id: PBO:0038791
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id: PBO:0028679
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id: GO:0106301
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id: FYPO:0005065
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id: PBO:0063084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"progestin and adipoQ receptor family member 3","termid":"PBO:0063084"}


id: GO:0034608
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Location, by the male, of his partner's vulva when backing along the ventral side of the hermaphrodite during mating. The male stops at the vulva, coordinates his movements to the hermaphrodite's, and positions his tail precisely over the vulva so that he may insert his spicules and ejaculate.","definition_xrefs":["PMID:18050467"],"direct_ancestors":[{"relation_name":"is_a","term_name":"male mating behavior","termid":"GO:0060179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vulval location","termid":"GO:0034608"}


id: PR:O94682
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mis20 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94682"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C776.16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC776.16","synonyms":[{"name":"Spom972h-mis20","type":"exact"}],"termid":"PR:O94682"}


id: PBO:0050259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 37","termid":"PBO:0050259"}


id: PBO:0073139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC22 homolog B2, pseudogene","termid":"PBO:0073139"}


id: GO:0006881
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of binding or confining iron ions in an extracellular area such that they are separated from other components of a biological system.","definition_xrefs":["GOC:ai","GOC:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sequestering of iron ion","termid":"GO:0097577"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0098771"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0098771"],"is_obsolete":false,"name":"extracellular sequestering of iron ion","synonyms":[{"name":"extracellular iron ion retention","type":"exact"},{"name":"extracellular iron ion sequestering","type":"exact"},{"name":"extracellular iron ion sequestration","type":"exact"},{"name":"extracellular iron ion storage","type":"exact"},{"name":"extracellular retention of iron ion","type":"exact"},{"name":"extracellular sequestration of iron ion","type":"exact"},{"name":"extracellular storage of iron ion","type":"exact"}],"termid":"GO:0006881"}


id: PBO:0044654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynactin subunit 5","termid":"PBO:0044654"}


id: PBO:0042473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CUB domain containing protein 2","termid":"PBO:0042473"}


id: PBO:0049007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycoprotein hormone subunit beta 5","termid":"PBO:0049007"}


id: GO:0072682
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of an eosinophil from the blood vessels into the surrounding tissue.","definition_xrefs":["GOC:BHF","CL:0000771","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular extravasation","termid":"GO:0045123"},{"relation_name":"is_a","term_name":"eosinophil migration","termid":"GO:0072677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"eosinophil extravasation","termid":"GO:0072682"}


id: GO:0042656
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the phosphorylation and activation of JUN kinase kinase kinases (JNKKKs).","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"MAP kinase kinase kinase kinase activity","termid":"GO:0008349"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0140096","GO:0016301","GO:0004672","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"JUN kinase kinase kinase kinase activity","synonyms":[{"name":"JUNKKKK activity","type":"exact"}],"termid":"GO:0042656"}


id: GO:0061365
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the activity of triglyceride lipase.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of lipase activity","termid":"GO:0060193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of triglyceride lipase activity","synonyms":[{"name":"positive regulation of TAG activity","type":"exact"}],"termid":"GO:0061365"}


id: PBO:0081187
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc fingers and homeoboxes 3","termid":"PBO:0081187"}


id: PBO:0077653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF receptor superfamily member 1B","termid":"PBO:0077653"}


id: PBO:0028921
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_transcription_during_glucose_starvation_and_oxidative_stress","termid":"PBO:0028921"}


id: PATO:0000710
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000710 time value (obsolete PATO:0000710)","termid":"PATO:0000710"}


id: PBO:0030472
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_spindle_pole_body_separation","termid":"PBO:0030472"}


id: GO:1902376
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any protein denaturation that is involved in proteasomal ubiquitin-dependent protein catabolic process.","definition_xrefs":["PMID:21091378","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete protein denaturation involved in proteasomal ubiquitin-dependent protein catabolic process (obsolete GO:1902376)","synonyms":[{"name":"protein denaturation involved in proteasomal pathway","type":"exact"},{"name":"protein denaturation involved in proteasomal processing","type":"related"},{"name":"protein denaturation involved in proteasomal ubiquitin-dependent protein breakdown","type":"exact"},{"name":"protein denaturation involved in proteasomal ubiquitin-dependent protein catabolism","type":"exact"},{"name":"protein denaturation involved in proteasomal ubiquitin-dependent protein degradation","type":"exact"},{"name":"protein denaturation involved in proteasome pathway","type":"related"}],"termid":"GO:1902376"}


id: PBO:0061394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophosmin/nucleoplasmin 3","termid":"PBO:0061394"}


id: GO:0086005
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An action potential that occurs in a ventricular cardiac muscle cell.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac muscle cell action potential involved in contraction","termid":"GO:0086002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ventricular cardiac muscle cell action potential","termid":"GO:0086005"}


id: PBO:0072746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S100 calcium binding protein A7 pseudogene 2","termid":"PBO:0072746"}


id: PBO:0064486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase nu","termid":"PBO:0064486"}


id: PBO:0062126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily D member 6","termid":"PBO:0062126"}


id: PBO:0071220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 61","termid":"PBO:0071220"}


id: GO:0036501
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A dimeric protein complex that contains the co-factors for the ATPase VCP/p97 (Cdc48p in budding yeast). In mammals, this complex consists of UFD1L (UFD1) and NPLOC4 (NPL4). In budding yeast, the complex is a dimer of Ufd1p and Npl4p.","definition_xrefs":["GOC:bf","GOC:PARL","PMID:10811609","PMID:17289586"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"UFD1-NPL4 complex","synonyms":[{"name":"Npl4p-Ufd1p complex","type":"exact"},{"name":"UFD1L-NPLOC4 complex","type":"exact"},{"name":"Ufd1-Npl4 binary complex","type":"exact"},{"name":"Ufd1-Npl4 cofactor complex","type":"exact"},{"name":"Ufd1/Npl4 complex","type":"exact"}],"termid":"GO:0036501"}


id: PBO:0038459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apoptotic BCL2L1-antisense long non-coding RNA","termid":"PBO:0038459"}


id: GO:0006210
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of thymine, 5-methyluracil, one of the two major pyrimidine bases present (as thymidine) in DNA but not found in RNA other than (as ribothymidine) in transfer RNA, where it is a minor base.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleobase catabolic process","termid":"GO:0006208"},{"relation_name":"is_a","term_name":"thymine metabolic process","termid":"GO:0019859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"thymine catabolic process","synonyms":[{"name":"thymine breakdown","type":"exact"},{"name":"thymine catabolism","type":"exact"},{"name":"thymine degradation","type":"exact"}],"termid":"GO:0006210"}


id: PBO:0048354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 65","termid":"PBO:0048354"}


id: GO:1900545
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of phenotypic switching.","definition_xrefs":["GOC:TermGenie","GOC:di"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of phenotypic switching by regulation of transcription from RNA polymerase II promoter (obsolete GO:1900545)","synonyms":[{"name":"regulation of phenotypic dimorphism by regulation of transcription from RNA polymerase II promoter","type":"related"}],"termid":"GO:1900545"}


id: FYECO:0000048
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which petroselinic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ fatty acid","termid":"FYECO:0000042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ petroselinic acid","termid":"FYECO:0000048"}


id: PATO:0001767
data:
  {"annotation_feature_type":"gene","cv_name":"quality","direct_ancestors":[{"relation_name":"is_a","term_name":"fertility","termid":"PATO:0000274"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"semi-fertile","termid":"PATO:0001767"}


id: GO:0070843
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of misfolded proteins in a cell, including the movement of proteins between specific compartments or structures within a cell.","definition_xrefs":["GOC:BHF","GOC:mah","PMID:14675537"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein transport","termid":"GO:0006886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"misfolded protein transport","termid":"GO:0070843"}


id: PBO:0003202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear RNA U4","termid":"PBO:0003202"}


id: GO:0097034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The biogenesis of a mitochondrial respiratory chain complex IV (also known as cytochrome c oxidase complex), a protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Includes the synthesis of constituent proteins and their aggregation, arrangement and bonding together.","definition_xrefs":["GOC:mcc"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial respiratory chain complex IV biogenesis (obsolete GO:0097034)","synonyms":[{"name":"mitochondrial cytochrome c oxidase complex biogenesis","type":"exact"}],"termid":"GO:0097034"}


id: PBO:0040857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bridge-like lipid transfer protein family member 3A","termid":"PBO:0040857"}


id: PBO:0058257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4635","termid":"PBO:0058257"}


id: PBO:0041473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 11 open reading frame 52","termid":"PBO:0041473"}


id: GO:0075318
data:
  {"annotated_genes":["SJAG_03501"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114211],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0075319"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of ascus development, a process that leads to the formation of basidium, a sac-like structure produced by fungi of the phylum Ascomycota (sac fungi) in which sexually produced spores (ascospores), usually four or eight in number, are formed.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of spore-bearing organ development","termid":"GO:0075260"},{"relation_name":"regulates","term_name":"ascus development","termid":"GO:0075317"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03501":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of ascus development","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0075318","terms_by_termid":{"GO:0075319":null}}


id: GO:0099052
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The membrane scission process that is the final step in the formation of a clathrin-coated endocytic vesicle: separation from the plasma membrane.","definition_xrefs":["PMID:21779028"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle scission involved in endocytosis","termid":"GO:0099051"},{"relation_name":"part_of","term_name":"clathrin-dependent endocytosis","termid":"GO:0072583"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0006810","GO:0061024"],"is_obsolete":false,"name":"vesicle scission involved in clathrin-mediated endocytosis","termid":"GO:0099052"}


id: PBO:0046173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ELK1 pseudogene 1","termid":"PBO:0046173"}


id: GO:0032124
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the macronucleus.","definition_xrefs":["GOC:mah","GOC:jl","PMID:10503190","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus organization","termid":"GO:0006997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"macronucleus organization","synonyms":[{"name":"macronuclear organization","type":"exact"},{"name":"macronuclear organization and biogenesis","type":"related"},{"name":"macronucleus organisation","type":"exact"}],"termid":"GO:0032124"}


id: PBO:0005273
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein Negative Regulator","termid":"PBO:0005273"}


id: GO:0034457
data:
  {"annotated_genes":["SJAG_03252","SJAG_02681","SJAG_02372"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[87587,87756,89756],"is_not":false,"summary":null,"term":"GO:0034457"}]},"cv_name":"cellular_component","definition":"A protein complex that forms a subcomplex of the 90S preribosome. In S. cerevisiae, it is composed of Mpp10p, Imp3p and Imp4p.","definition_xrefs":["GOC:mah","PMID:17515605"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"part_of","term_name":"nucleolus","termid":"GO:0005730"},{"relation_name":"part_of","term_name":"90S preribosome","termid":"GO:0030686"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02372":null,"SJAG_02681":null,"SJAG_03252":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005730"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0030684"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005730","GO:0005634","GO:0032991","GO:0030684"],"is_obsolete":false,"name":"Mpp10 complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0034457","terms_by_termid":{"GO:0034457":null}}


id: GO:0014884
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a muscle inactivity stimulus is received by a cell and converted into a molecular signal. This occurs as part of the regulation of muscle adaptation.","definition_xrefs":["GOC:mtg_muscle","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of muscle inactivity","termid":"GO:0014869"},{"relation_name":"is_a","term_name":"response to muscle inactivity involved in regulation of muscle adaptation","termid":"GO:0014877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of muscle inactivity involved in regulation of muscle adaptation","termid":"GO:0014884"}


id: FYPO:0000370
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which RNA modification is abnormal. All RNA modification may be abnormal, or one or more specific RNA modifications may be selectively affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleic acid metabolism phenotype during vegetative growth","termid":"FYPO:0001347"},{"relation_name":"is_a","term_name":"abnormal metabolic process during vegetative growth","termid":"FYPO:0001363"},{"relation_name":"is_a","term_name":"abnormal RNA metabolic process","termid":"FYPO:0004851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal RNA modification","synonyms":[{"name":"RNA modification: abnormal","type":"related"},{"name":"abnormal RNA modification during mitotic cell cycle","type":"related"},{"name":"abnormal RNA modification during vegetative growth","type":"exact"}],"termid":"FYPO:0000370"}


id: PBO:0002685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT I complex subunit Vps23","termid":"PBO:0002685"}


id: PBO:0051611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 36 alpha","termid":"PBO:0051611"}


id: GO:1901860
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mitochondrial DNA metabolic process.","definition_xrefs":["GOC:yaf","PMID:23150719","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organelle organization","termid":"GO:0010638"},{"relation_name":"is_a","term_name":"regulation of mitochondrion organization","termid":"GO:0010821"},{"relation_name":"is_a","term_name":"positive regulation of DNA metabolic process","termid":"GO:0051054"},{"relation_name":"is_a","term_name":"regulation of mitochondrial DNA metabolic process","termid":"GO:1901858"},{"relation_name":"positively_regulates","term_name":"mitochondrion organization","termid":"GO:0007005"},{"relation_name":"positively_regulates","term_name":"mitochondrial DNA metabolic process","termid":"GO:0032042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0007005"},{"rel_name":"regulates","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0007005","GO:0008150"],"is_obsolete":false,"name":"positive regulation of mitochondrial DNA metabolic process","synonyms":[{"name":"activation of mitochondrial DNA metabolic process","type":"narrow"},{"name":"activation of mitochondrial DNA metabolism","type":"exact"},{"name":"activation of mtDNA metabolic process","type":"exact"},{"name":"activation of mtDNA metabolism","type":"exact"},{"name":"positive regulation of mitochondrial DNA metabolism","type":"exact"},{"name":"positive regulation of mtDNA metabolic process","type":"exact"},{"name":"positive regulation of mtDNA metabolism","type":"exact"},{"name":"up regulation of mitochondrial DNA metabolic process","type":"exact"},{"name":"up regulation of mitochondrial DNA metabolism","type":"exact"},{"name":"up regulation of mtDNA metabolic process","type":"exact"},{"name":"up regulation of mtDNA metabolism","type":"exact"},{"name":"up-regulation of mitochondrial DNA metabolic process","type":"exact"},{"name":"up-regulation of mitochondrial DNA metabolism","type":"exact"},{"name":"up-regulation of mtDNA metabolic process","type":"exact"},{"name":"up-regulation of mtDNA metabolism","type":"exact"},{"name":"upregulation of mitochondrial DNA metabolic process","type":"exact"},{"name":"upregulation of mitochondrial DNA metabolism","type":"exact"},{"name":"upregulation of mtDNA metabolic process","type":"exact"},{"name":"upregulation of mtDNA metabolism","type":"exact"}],"termid":"GO:1901860"}


id: PATO:0000267
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000267 relative visual_acuity (obsolete PATO:0000267)","termid":"PATO:0000267"}


id: PBO:0043414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cardiomyopathy associated 5","termid":"PBO:0043414"}


id: GO:0018879
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving biphenyl, a toxic aromatic hydrocarbon used as a heat transfer agent, as a fungistat in packaging citrus fruits and in plant disease control. Biphenyl can be chlorinated with 1-10 chlorine molecules to form polychlorinated biphenyls (PCBs).","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"biphenyl metabolic process","secondary_identifiers":["UM-BBD_pathwayID:bph"],"synonyms":[{"name":"biphenyl metabolism","type":"exact"},{"name":"xenene metabolic process","type":"exact"},{"name":"xenene metabolism","type":"exact"}],"termid":"GO:0018879"}


id: PBO:0072027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S9 pseudogene 3","termid":"PBO:0072027"}


id: GO:0051947
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of gamma-aminobutyric acid (GABA, 4-aminobutyrate) into a neuron or glial cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organic acid transport","termid":"GO:0032890"},{"relation_name":"is_a","term_name":"regulation of amino acid uptake involved in synaptic transmission","termid":"GO:0051941"},{"relation_name":"regulates","term_name":"gamma-aminobutyric acid reuptake","termid":"GO:0051936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of gamma-aminobutyric acid uptake involved in transmission of nerve impulse","synonyms":[{"name":"regulation of 4-aminobutyrate reuptake","type":"exact"},{"name":"regulation of 4-aminobutyrate uptake during transmission of nerve impulse","type":"exact"},{"name":"regulation of GABA reuptake","type":"exact"},{"name":"regulation of GABA uptake during transmission of nerve impulse","type":"exact"},{"name":"regulation of gamma-aminobutyric acid reuptake","type":"exact"},{"name":"regulation of gamma-aminobutyric acid uptake during transmission of nerve impulse","type":"related"},{"name":"regulation of gamma-aminobutyric acid uptake involved in conduction of nerve impulse","type":"exact"}],"termid":"GO:0051947"}


id: PBO:0074544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SND1 intronic transcript 1","termid":"PBO:0074544"}


id: PBO:0057617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1183","termid":"PBO:0057617"}


id: GO:0140261
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein-containing complex that monoubiquitinates histone H2A on K119, thus it facilitates the maintenance of the transcriptionally repressive state of some genes, such as BCL6. It consists of the corepressor BCOR or BCORL1, a Polycomb group (PcG) and a SCF ubiquitin ligase subcomplexes. In mammals, the core subunits of the complex include the PcG and PcG-associated proteins NSPC1, RING1, RNF2, and RYBP and the components of the SCF ubiquitin ligase, SKP1, and FBXL10.","definition_xrefs":["PMID:24515802","PMID:22325352","PMID:16943429"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear ubiquitin ligase complex","termid":"GO:0000152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"BCOR complex","synonyms":[{"name":"BCL6 corepressor (BCOR) complex","type":"exact"},{"name":"BCOR/BCORL1 complex","type":"exact"},{"name":"PRC1.1 complex","type":"exact"},{"name":"non-canonical BCOR-PRC1.1 complex","type":"exact"},{"name":"non-canonical PRC1-BCOR complex","type":"exact"}],"termid":"GO:0140261"}


id: FYPO:0002277
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of protein degradation is increased when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"decreased protein level during cellular response to nitrogen starvation","termid":"FYPO:0001283"},{"relation_name":"is_a","term_name":"increased protein degradation","termid":"FYPO:0002276"},{"relation_name":"is_a","term_name":"abnormal protein degradation during nitrogen starvation","termid":"FYPO:0002796"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0002274"],"is_obsolete":false,"name":"increased protein degradation during nitrogen starvation","synonyms":[{"name":"increased protein breakdown during nitrogen starvation","type":"exact"},{"name":"increased protein catabolic process during nitrogen starvation","type":"exact"},{"name":"increased protein catabolism during nitrogen starvation","type":"exact"},{"name":"increased protein degradation during nitrogen depletion","type":"exact"},{"name":"increased protein degradation during nitrogen deprivation","type":"exact"}],"termid":"FYPO:0002277"}


id: FYPO:0005806
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of movement of one or more proteins within the plasma membrane of the lateral part of the cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:25837586","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein movement within plasma membrane during vegetative growth","termid":"FYPO:0005804"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal rate of protein movement within plasma membrane at cell side","synonyms":[{"name":"normal rate of protein movement within plasma membrane at cell side during mitotic cell cycle","type":"related"},{"name":"normal rate of protein movement within plasma membrane at cell side during vegetative growth","type":"exact"},{"name":"normal rate of protein movement within plasma membrane at lateral part of cell","type":"exact"}],"termid":"FYPO:0005806"}


id: GO:0046060
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving dATP, deoxyadenosine triphosphate (2'-deoxyadenosine 5'-triphosphate).","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine deoxyribonucleotide metabolic process","termid":"GO:0009151"},{"relation_name":"is_a","term_name":"purine deoxyribonucleoside triphosphate metabolic process","termid":"GO:0009215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"dATP metabolic process","synonyms":[{"name":"dATP metabolism","type":"exact"}],"termid":"GO:0046060"}


id: PBO:0004078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ark1/Prk1 family protein kinase Ppk29","termid":"PBO:0004078"}


id: PBO:0087632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the EGO/GSE complex; the vacuolar/endosomal membrane associated EGO/GSE complex regulates exit from rapamycin-induced growth arrest, stimulating microautophagy and sorting of Gap1p from the endosome to the plasma membrane; essential for the integrity and function of EGO; gene exhibits synthetic genetic interaction with MSS4","termid":"PBO:0087632"}


id: GO:0061432
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a methionine stimulus.","definition_xrefs":["GOC:dph","PMID:7891681"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter in response to methionine (obsolete GO:0061432)","termid":"GO:0061432"}


id: PBO:0078044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 34","termid":"PBO:0078044"}


id: PBO:0086166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for spore wall formation; subunit of leading edge protein (LEP) complex (Ssp1-Ady3-Don1-Irc10) that forms ring-like structure at leading edge of prospore membrane during meiosis II; mediates assembly of LEP complex, formation of ring-like structure via interaction with spindle pole body components, and prospore membrane maturation; potentially phosphorylated by Cdc28p; ADY3 has a paralog, CNM67, that arose from the whole genome duplication","termid":"PBO:0086166"}


id: GO:0003912
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); template-independent extension of the 3'-end of a DNA strand by one nucleotide at a time.","definition_xrefs":["EC:2.7.7.31"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA polymerase activity","termid":"GO:0034061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0016779"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016779","GO:0140097"],"is_obsolete":false,"name":"DNA nucleotidylexotransferase activity","secondary_identifiers":["MetaCyc:DNA-NUCLEOTIDYLEXOTRANSFERASE-RXN"],"synonyms":[{"name":"TdT","type":"related"},{"name":"addase activity","type":"related"},{"name":"deoxynucleotidyl terminal transferase activity","type":"related"},{"name":"deoxyribonucleic acid nucleotidyltransferase activity","type":"related"},{"name":"deoxyribonucleic nucleotidyltransferase activity","type":"related"},{"name":"nucleoside-triphosphate:DNA deoxynucleotidylexotransferase activity","type":"related"},{"name":"terminal addition enzyme activity","type":"related"},{"name":"terminal deoxynucleotide transferase activity","type":"related"},{"name":"terminal deoxynucleotidyltransferase activity","type":"related"},{"name":"terminal deoxyribonucleotidyltransferase activity","type":"related"},{"name":"terminal transferase activity","type":"related"}],"termid":"GO:0003912"}


id: FYPO:0005095
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at replication origins is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to chromatin during vegetative growth","termid":"FYPO:0001508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to chromatin at replication origin","synonyms":[{"name":"abolished protein localisation to chromatin at replication origin during vegetative growth","type":"exact"},{"name":"abolished protein localization to chromatin at replication origin during mitotic cell cycle","type":"related"},{"name":"protein localization to chromatin at replication origin during vegetative growth abolished","type":"exact"}],"termid":"FYPO:0005095"}


id: PBO:0053779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1029","termid":"PBO:0053779"}


id: GO:0061266
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the interstitial fibroblasts of the mesonephros as it progresses from its formation to the mature state.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation involved in mesonephros development","termid":"GO:0061208"},{"relation_name":"is_a","term_name":"kidney interstitial fibroblast differentiation","termid":"GO:0072071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric interstitial fibroblast differentiation","synonyms":[{"name":"mesonephros interstitial cell differentiation","type":"exact"}],"termid":"GO:0061266"}


id: PBO:0064004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 38","termid":"PBO:0064004"}


id: MOD:00952
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that crosslinks an aspartic acid and the following glycine residue with the formation of (2-aminosuccinimidyl)acetic acid and the loss of a water molecule.","definition_xrefs":["PubMed:10801322","RESID:AA0441#ASP"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked residues with loss of water","termid":"MOD:00954"},{"relation_name":"is_a","term_name":"(2-aminosuccinimidyl)acetic acid","termid":"MOD:01628"},{"relation_name":"is_a","term_name":"crosslinked L-aspartic acid residue","termid":"MOD:02043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(2-aminosuccinimidyl)acetic acid (Asp)","synonyms":[{"name":"(2-aminosuccinimidyl)acetic acid","type":"exact"},{"name":"(3-amino-2,5-dioxo-1-pyrrolidinyl)acetic acid","type":"exact"},{"name":"CROSSLNK (2-aminosuccinimidyl)acetic acid (Asp-Gly)","type":"exact"},{"name":"N-(2-aminosuccinyl)glycine","type":"exact"},{"name":"[(3S)-3-amino-2,5-dioxopyrrolidin-1-yl]acetic acid","type":"exact"},{"name":"anhydroaspartyl glycine","type":"exact"},{"name":"aspartimide glycine","type":"exact"}],"termid":"MOD:00952"}


id: GO:1903992
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of protein stabilization.","definition_xrefs":["PMID:18573880","GO_REF:0000058","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of protein stabilization (obsolete GO:1903992)","synonyms":[{"name":"regulation of lysosomal protein stabilization","type":"narrow"},{"name":"regulation of positive regulation of protein stability","type":"exact"},{"name":"regulation of protein sequestering","type":"related"},{"name":"regulation of protein stabilization","type":"exact"},{"name":"regulation of protein stabilization activity","type":"related"}],"termid":"GO:1903992"}


id: PBO:0085708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in silencing at mating-type loci HML and HMR; recruitment to silent chromatin requires interactions with Orc1p and with Sir4p, through a common Sir1p domain; binds to centromeric chromatin","termid":"PBO:0085708"}


id: PBO:0065651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase receptor type D","termid":"PBO:0065651"}


id: GO:0045736
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity.","definition_xrefs":["GOC:go_curators","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cyclin-dependent protein serine/threonine kinase activity","termid":"GO:0000079"},{"relation_name":"is_a","term_name":"negative regulation of cell cycle","termid":"GO:0045786"},{"relation_name":"is_a","term_name":"negative regulation of protein serine/threonine kinase activity","termid":"GO:0071901"},{"relation_name":"is_a","term_name":"negative regulation of cyclin-dependent protein kinase activity","termid":"GO:1904030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"negative regulation of cyclin-dependent protein serine/threonine kinase activity","termid":"GO:0045736"}


id: PBO:0085656
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in mitochondrion organization; functions with Nca2p to regulate mitochondrial expression of subunits 6 (Atp6p) and 8 (Atp8p) of the Fo-F1 ATP synthase; SWAT-GFP, seamless-GFP and mCherry fusion proteins localize to the vacuole; member of the SUN family; expression induced in cells treated with the mycotoxin patulin; NCA3 has a paralog, UTH1, that arose from the whole genome duplication","termid":"PBO:0085656"}


id: PBO:0045163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein axonemal intermediate chain 3","termid":"PBO:0045163"}


id: GO:0072756
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a paraquat stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"},{"relation_name":"is_a","term_name":"response to paraquat","termid":"GO:1901562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to paraquat","termid":"GO:0072756"}


id: GO:0033195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkyl hydroperoxide stimulus. Alkyl hydroperoxides are monosubstitution products of hydrogen peroxide, HOOH, where the substituent is an alkyl group.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to hydroperoxide","termid":"GO:0033194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to alkyl hydroperoxide","termid":"GO:0033195"}


id: GO:0000708
data:
  {"annotated_genes":["SJAG_03751","SJAG_04950","SJAG_02267","SJAG_01410","SJAG_01708","SJAG_03221"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95113,103694,106323],"is_not":false,"summary":null,"term":"GO:0000708"},{"annotations":[96596,84597,88947],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010774"}]},"cv_name":"biological_process","definition":"The cell cycle process in which the nucleoprotein complex (composed of the broken single-strand DNA and the recombinase) searches and identifies a region of homology in intact duplex DNA. The broken single-strand DNA displaces the like strand and forms Watson-Crick base pairs with its complement, forming a duplex in which each strand is from one of the two recombining DNA molecules. This occurs during meiosis.","definition_xrefs":["GOC:elh","PMID:10915877"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA strand invasion","termid":"GO:0042148"},{"relation_name":"is_a","term_name":"meiosis I cell cycle process","termid":"GO:0061982"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01410":null,"SJAG_01708":null,"SJAG_02267":null,"SJAG_03221":null,"SJAG_03751":null,"SJAG_04950":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006310"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0006259","GO:0008150","GO:0007049","GO:0006310"],"is_obsolete":false,"name":"meiotic strand invasion","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"meiotic D-loop biosynthesis","type":"related"},{"name":"meiotic D-loop formation","type":"related"},{"name":"meiotic displacement loop biosynthesis","type":"related"},{"name":"meiotic displacement loop formation","type":"related"}],"termid":"GO:0000708","terms_by_termid":{"GO:0000708":null,"GO:0010774":null}}


id: GO:0033873
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + 5alpha-cholane-3alpha,7alpha,12alpha,24-tetrol = 3alpha,7alpha,12alpha-trihydroxy-5alpha-cholan-24-yl sulfate + adenosine 3',5'-diphosphate + H+.","definition_xrefs":["EC:2.8.2.31","RHEA:16997"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfotransferase activity","termid":"GO:0008146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016782","GO:0003824"],"is_obsolete":false,"name":"petromyzonol sulfotransferase activity","secondary_identifiers":["KEGG_REACTION:R07797","MetaCyc:2.8.2.31-RXN"],"synonyms":[{"name":"3'-phosphoadenylyl-sulfate:5alpha-cholan-3alpha,7alpha,12alpha,24-tetrol sulfotransferase activity","type":"related"},{"name":"PZ-SULT","type":"related"}],"termid":"GO:0033873"}


id: GO:0016839
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the cleavage of a carbon-oxygen bond. Enzymes with this activity are 'miscellaneous' carbon-oxygen lyases that cannot be grouped into one of the specific subclasses of the carbon-oxygen lyases.","definition_xrefs":["GOC:krc"],"gene_count":0,"genotype_count":0,"name":"obsolete other carbon-oxygen lyase activity (obsolete GO:0016839)","synonyms":[{"name":"other carbon-oxygen lyase activity","type":"exact"}],"termid":"GO:0016839"}


id: PBO:0048728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycolipid transfer protein domain containing 2","termid":"PBO:0048728"}


id: PBO:0066591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ras homolog family member F, filopodia associated","termid":"PBO:0066591"}


id: GO:0032580
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding any of the thin, flattened compartments that form the central portion of the Golgi complex.","definition_xrefs":["GOC:ecd","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle membrane","termid":"GO:0031090"},{"relation_name":"part_of","term_name":"Golgi cisterna","termid":"GO:0031985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005794","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"Golgi cisterna membrane","synonyms":[{"name":"Golgi apparatus cisterna membrane","type":"exact"},{"name":"Golgi stack membrane","type":"exact"}],"termid":"GO:0032580"}


id: PBO:0041267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C1q C chain","termid":"PBO:0041267"}


id: PBO:0081323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 114","termid":"PBO:0081323"}


id: PBO:0069322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 580, pseudogene","termid":"PBO:0069322"}


id: GO:0032806
data:
  {"annotated_genes":["SJAG_00995","SJAG_01149","SJAG_04420","SJAG_03618","SJAG_00758","SJAG_01207","SJAG_00512","SJAG_03206","SJAG_04368","SJAG_00150","SJAG_04614","SJAG_02057","SJAG_03061","SJAG_01213","SJAG_03967","SJAG_00901"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[113000,91867,106930],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070692"},{"annotations":[105053,104893],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070691"},{"annotations":[102064,88244,105001,85988,86350,99195,110840,104503,111146],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005675"},{"annotations":[108992,102065,108103],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070985"}]},"cv_name":"cellular_component","definition":"A protein complex that phosphorylates amino acid residues of RNA polymerase II C-terminal domain repeats; phosphorylation occurs mainly on Ser2 and Ser5.","definition_xrefs":["PMID:17079683","PMID:15047695","PMID:16721054"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"is_a","term_name":"serine/threonine protein kinase complex","termid":"GO:1902554"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00150":null,"SJAG_00512":null,"SJAG_00758":null,"SJAG_00901":null,"SJAG_00995":null,"SJAG_01149":null,"SJAG_01207":null,"SJAG_01213":null,"SJAG_02057":null,"SJAG_03061":null,"SJAG_03206":null,"SJAG_03618":null,"SJAG_03967":null,"SJAG_04368":null,"SJAG_04420":null,"SJAG_04614":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"carboxy-terminal domain protein kinase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"CTDK complex","type":"exact"}],"termid":"GO:0032806","terms_by_termid":{"GO:0005675":null,"GO:0070691":null,"GO:0070692":null,"GO:0070985":null}}


id: PR:Q9C0X0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC29A3.21 gene.","definition_xrefs":["UniProtKB:Q9C0X0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C29A3.21 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A3.21","synonyms":[{"name":"Spom972h-SPBC29A3.21","type":"exact"}],"termid":"PR:Q9C0X0"}


id: SO:0001862
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A dinucleotide repeat region composed of GT repeating elements.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dinucleotide_repeat_microsatellite_feature","termid":"SO:0000290"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GT_dinucleotide_repeat","synonyms":[{"name":"d(GT)n","type":"exact"}],"termid":"SO:0001862"}


id: GO:0070369
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains beta-catenin and TCF7L2 (TCF4), binds to the TCF DNA motif within a promoter element, and is involved in the regulation of WNT target gene transcription.","definition_xrefs":["GOC:rl","GOC:BHF","PMID:9065401","PMID:9065402"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catenin-TCF7L2 complex","termid":"GO:0071664"},{"relation_name":"is_a","term_name":"beta-catenin-TCF complex","termid":"GO:1990907"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"beta-catenin-TCF7L2 complex","synonyms":[{"name":"beta-catenin-TCF4 complex","type":"exact"}],"termid":"GO:0070369"}


id: PBO:0005153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CASP family protein involved in Golgi vesicle transport (predicted)","termid":"PBO:0005153"}


id: SO:1001268
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A site in an mRNA sequence that stimulates the recoding of a region in the same mRNA.","direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA_region","termid":"SO:0000836"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recoding_stimulatory_region","synonyms":[{"name":"INSDC_feature:regulatory","type":"broad"},{"name":"INSDC_qualifier:recoding_stimulatory_region","type":"exact"},{"name":"recoding stimulatory region","type":"exact"},{"name":"recoding stimulatory signal","type":"exact"}],"termid":"SO:1001268"}


id: SO:0000007
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert.","definition_xrefs":["SO:ls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"read","termid":"SO:0000150"},{"relation_name":"part_of","term_name":"contig","termid":"SO:0000149"},{"relation_name":"part_of","term_name":"paired_end_fragment","termid":"SO:0001790"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"read_pair","synonyms":[{"name":"mate pair","type":"exact"},{"name":"read-pair","type":"exact"}],"termid":"SO:0000007"}


id: GO:0016544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process during courtship where the male insect taps the female with his frontal leg. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:mtg_sensu","PMID:11092827"],"direct_ancestors":[{"relation_name":"is_a","term_name":"male courtship behavior","termid":"GO:0008049"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"male courtship behavior, tapping to detect pheromone","synonyms":[{"name":"male courtship behavior, tapping","type":"related"},{"name":"male courtship behaviour, tapping","type":"exact"},{"name":"male courtship behaviour, tapping to detect pheromone","type":"related"}],"termid":"GO:0016544"}


id: GO:0097389
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of chemokine (C-C motif) ligand 21 (CCL21) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:rv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"chemokine (C-C motif) ligand 21 production","synonyms":[{"name":"CCL21 production","type":"exact"}],"termid":"GO:0097389"}


id: GO:0052494
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism reduces the flow of fluid within its symbiont's vascular system, the vessels and tissue that carry or circulate fluids, such as blood, lymph or sap, through the body of an animal or plant. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete occlusion by host of symbiont vascular system (obsolete GO:0052494)","termid":"GO:0052494"}


id: PBO:0082611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Coenzyme Q (ubiquinone) binding protein; functions in the delivery of Q<sub>6</sub> to its proper location for electron transport during respiration; START domain protein with homologs in bacteria and eukaryotes; respiratory growth defect of the null mutant is functionally complemented by human COQ10A","termid":"PBO:0082611"}


id: PBO:0018144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TAP42 family protein involved in TOR signalling Tap42 (predicted)","termid":"PBO:0018144"}


id: PR:O94579
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A proteasome subunit alpha type-2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11599:SF16","PRO:DNx","OMA:SCHPO04818"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome subunit alpha type-2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1442.06","secondary_identifiers":["UniProtKB:O94579"],"synonyms":[{"name":"Spom972h-PSMA2","type":"exact"}],"termid":"PR:O94579"}


id: PBO:0078723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon TAG) 3-1","termid":"PBO:0078723"}


id: GO:0071106
data:
  {"annotated_genes":["SJAG_03452","SJAG_04325"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102721],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035348"},{"annotations":[86917],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990559"}]},"cv_name":"biological_process","definition":"The process in which adenosine 3',5'-bisphosphate is transported across a membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide transport","termid":"GO:0015868"},{"relation_name":"is_a","term_name":"adenine nucleotide transport","termid":"GO:0051503"},{"relation_name":"is_a","term_name":"purine-containing compound transmembrane transport","termid":"GO:0072530"},{"relation_name":"is_a","term_name":"nucleotide transmembrane transport","termid":"GO:1901679"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03452":null,"SJAG_04325":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"adenosine 3',5'-bisphosphate transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"adenosine 3',5'-bisphosphate membrane transport","type":"exact"},{"name":"adenosine 3',5'-diphosphate transport","type":"exact"},{"name":"adenosine 3'-phosphate-5'-phosphate transmembrane transport","type":"exact"}],"termid":"GO:0071106","terms_by_termid":{"GO:0035348":null,"GO:1990559":null}}


id: PBO:0053839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1104","termid":"PBO:0053839"}


id: PBO:0049761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"host cell factor C2 pseudogene 1","termid":"PBO:0049761"}


id: PBO:0088702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 Ubc8","termid":"PBO:0088702"}


id: PBO:0055557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2993","termid":"PBO:0055557"}


id: PBO:0002665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIE alpha subunit, TFIIEA, Tfa1","termid":"PBO:0002665"}


id: GO:0102769
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-alpha-D-glucose + a dihydroceramide = UDP + H+ + a D-glucosyl-N-acylsphinganine.","definition_xrefs":["EC:2.4.1.80","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"dihydroceramide glucosyltransferase activity","secondary_identifiers":["MetaCyc:RXN-7793"],"termid":"GO:0102769"}


id: PBO:0053727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 941","termid":"PBO:0053727"}


id: PBO:0065308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 27","termid":"PBO:0065308"}


id: PBO:0085166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Octanoyl-CoA:ethanol acyltransferase; also functions as thioesterase; plays a minor role in medium-chain fatty acid ethyl ester biosynthesis; localizes to lipid particles and the mitochondrial outer membrane; EHT1 has a paralog, EEB1, that arose from the whole genome duplication","termid":"PBO:0085166"}


id: PBO:0068311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNF13 pseudogene 1","termid":"PBO:0068311"}


id: PBO:0084120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Heme-binding protein; involved in regulation of cytochrome P450 protein Erg11p; damage response protein, related to mammalian membrane progesterone receptors; mutations lead to defects in telomeres, mitochondria, and sterol synthesis","termid":"PBO:0084120"}


id: PR:Q7LKZ6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC1020.13c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q7LKZ6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase C1020.13c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1020.13c","synonyms":[{"name":"Spom972h-SPCC1020.13c","type":"exact"}],"termid":"PR:Q7LKZ6"}


id: PBO:0083375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially/completely overlaps the verified ORF PGD1/YGL025C","termid":"PBO:0083375"}


id: PBO:0088909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein, Hsp70 family,  Ssa-like","termid":"PBO:0088909"}


id: GO:0051523
data:
  {"annotated_genes":["SJAG_00216","SJAG_04724","SJAG_03705","SJAG_01456","SJAG_04322","SJAG_03486","SJAG_02838"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84170,95789,99539,102873,106783,112496,113893],"is_not":false,"summary":null,"term":"GO:0051523"}]},"cv_name":"biological_process","definition":"The process in which a cell switches from monopolar cell growth to bipolar cell growth.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of bipolar cell polarity","termid":"GO:0061171"},{"relation_name":"is_a","term_name":"regulation of direction of cell growth","termid":"GO:0061389"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00216":null,"SJAG_01456":null,"SJAG_02838":null,"SJAG_03486":null,"SJAG_03705":null,"SJAG_04322":null,"SJAG_04724":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007163"}],"interesting_parent_ids":["GO:0008150","GO:0007163"],"is_obsolete":false,"name":"cell growth mode switching, monopolar to bipolar","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"NETO","type":"narrow"},{"name":"new end take off","type":"narrow"}],"termid":"GO:0051523","terms_by_termid":{"GO:0051523":null}}


id: PBO:0043087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cholinergic receptor nicotinic gamma subunit","termid":"PBO:0043087"}


id: PBO:0054766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2178","termid":"PBO:0054766"}


id: SO:0000061
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues of a restriction enzyme.","definition_xrefs":["SO:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclease_binding_site","termid":"SO:0000059"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"restriction_enzyme_binding_site","synonyms":[{"name":"restriction endonuclease binding site","type":"exact"},{"name":"restriction enzyme binding site","type":"exact"}],"termid":"SO:0000061"}


id: PBO:0029816
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_single_or_double_cell_division,_abnormal_cell_shape","termid":"PBO:0029816"}


id: PBO:0059329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S5 pseudogene 3","termid":"PBO:0059329"}


id: PBO:0063929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoinositide kinase, FYVE-type zinc finger containing","termid":"PBO:0063929"}


id: PR:O60177
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rrp2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60177"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized ATP-dependent helicase C23E6.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC23E6.02","synonyms":[{"name":"Spom972h-rrp2","type":"exact"}],"termid":"PR:O60177"}


id: PBO:0081734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 665","termid":"PBO:0081734"}


id: PBO:0092035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Alanine (ugc), mitochondrial","termid":"PBO:0092035"}


id: GO:0009538
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A photochemical system containing P700, the chlorophyll a dimer that functions as a primary electron donor. Functioning as a light-dependent plastocyanin-ferredoxin oxidoreductase, it transfers electrons from plastocyanin to ferredoxin.","definition_xrefs":["ISBN:0943088399","GOC:kd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"part_of","term_name":"photosystem I","termid":"GO:0009522"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"photosystem I reaction center","synonyms":[{"name":"photosystem I reaction centre","type":"exact"}],"termid":"GO:0009538"}


id: PBO:0067664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 842, pseudogene","termid":"PBO:0067664"}


id: PBO:0069390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 650, pseudogene","termid":"PBO:0069390"}


id: GO:0008443
data:
  {"annotated_genes":["SJAG_02713","SJAG_00039","SJAG_02596","SJAG_00605","SJAG_03336"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95993,97423,88931,85078],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003873"},{"annotations":[100507],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003872"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a phosphate group, usually from ATP, to a phosphofructose substrate molecule.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"},{"relation_name":"is_a","term_name":"carbohydrate kinase activity","termid":"GO:0019200"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00039":null,"SJAG_00605":null,"SJAG_02596":null,"SJAG_02713":null,"SJAG_03336":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016301","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"phosphofructokinase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0008443","terms_by_termid":{"GO:0003872":null,"GO:0003873":null}}


id: PBO:0078627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 77","termid":"PBO:0078627"}


id: GO:0052892
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an aromatic (S)-hydroxynitrile = an aromatic aldehyde + cyanide.","definition_xrefs":["RHEA:54660"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(S)-hydroxynitrile lyase activity","termid":"GO:0047606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"aromatic (S)-hydroxynitrile lyase activity","secondary_identifiers":["MetaCyc:RXN-11732","KEGG_REACTION:R09359"],"termid":"GO:0052892"}


id: PBO:0048413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GATA2 antisense RNA 1","termid":"PBO:0048413"}


id: GO:0044468
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the modulation of the frequency, rate or extent of blood coagulation in the bitten organism.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation resulting in modulation of process in another organism","termid":"GO:0035738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in modulation of blood coagulation in another organism","synonyms":[{"name":"envenomation resulting in modulation of blood coagulation in other organism","type":"exact"},{"name":"envenomation resulting in regulation of blood coagulation in other organism","type":"exact"}],"termid":"GO:0044468"}


id: GO:0019790
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete ubiquitin-like hydrolase activity (obsolete GO:0019790)","synonyms":[{"name":"ubiquitin-like hydrolase activity","type":"exact"}],"termid":"GO:0019790"}


id: PBO:0029669
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actin_cable_organization","termid":"PBO:0029669"}


id: GO:0042855
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of eugenol, a colorless, aromatic, liquid hydrocarbon (C10H12O2) found in clove oil.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenylpropanoid biosynthetic process","termid":"GO:0009699"},{"relation_name":"is_a","term_name":"eugenol metabolic process","termid":"GO:0042854"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"olefinic compound biosynthetic process","termid":"GO:0120255"},{"relation_name":"is_a","term_name":"ether biosynthetic process","termid":"GO:1901503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"eugenol biosynthetic process","synonyms":[{"name":"4-allyl-2-methoxyphenol biosynthesis","type":"exact"},{"name":"4-allyl-2-methoxyphenol biosynthetic process","type":"exact"},{"name":"eugenic acid biosynthesis","type":"exact"},{"name":"eugenic acid biosynthetic process","type":"exact"},{"name":"eugenol anabolism","type":"exact"},{"name":"eugenol biosynthesis","type":"exact"},{"name":"eugenol formation","type":"exact"},{"name":"eugenol synthesis","type":"exact"}],"termid":"GO:0042855"}


id: GO:0018394
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acetylation of peptidyl-lysine.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein acetylation","termid":"GO:0006473"},{"relation_name":"is_a","term_name":"peptidyl-lysine modification","termid":"GO:0018205"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-lysine acetylation","termid":"GO:0018394"}


id: GO:1903907
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of plasma membrane raft polarization.","definition_xrefs":["PMID:23575248","GOC:als","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular component organization","termid":"GO:0051129"},{"relation_name":"is_a","term_name":"regulation of plasma membrane raft polarization","termid":"GO:1903906"},{"relation_name":"negatively_regulates","term_name":"plasma membrane raft polarization","termid":"GO:0044858"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"negative regulation of plasma membrane raft polarization","synonyms":[{"name":"down regulation of plasma membrane raft polarization","type":"exact"},{"name":"down-regulation of plasma membrane raft polarization","type":"exact"},{"name":"downregulation of plasma membrane raft polarization","type":"exact"},{"name":"inhibition of plasma membrane raft polarization","type":"narrow"}],"termid":"GO:1903907"}


id: PBO:0034693
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H4-K16_acetylation_at_telomere","termid":"PBO:0034693"}


id: PBO:0087611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the COMPASS (Set1C) histone H3K4 methyltransferase complex; required for Set1C stability and optimal activity; COMPASS methylates histone H3 on lys 4 and is involved in telomeric silencing; subunit of CPF (cleavage and polyadenylation factor), a complex involved in RNAP II transcription termination","termid":"PBO:0087611"}


id: GO:0000482
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the maturation of a precursor 5S ribosomal RNA (rRNA) molecule into a mature 5S rRNA molecule from the pre-rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, Large Subunit (LSU) the 4.5S rRNA, and the 5S rRNA in that order from 5' to 3' along the primary transcript.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maturation of 5S rRNA","termid":"GO:0000481"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0042254"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0042254","GO:0044085","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"maturation of 5S rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)","termid":"GO:0000482"}


id: GO:0051114
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The uridylylation of peptidyl-histidine to form peptidyl-1'-(phospho-5'-uridine)-L-histidine (otherwise known as tau-UMP-histidine, tele-UMP-histidine) or peptidyl-3'-(phospho-5'-uridine)-L-histidine (otherwise known as pi-UMP-histidine, pros-UMP-histidine).","definition_xrefs":["RESID:AA0372"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein uridylylation","termid":"GO:0018177"},{"relation_name":"is_a","term_name":"peptidyl-histidine modification","termid":"GO:0018202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-histidine uridylylation","termid":"GO:0051114"}


id: PBO:0113102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA helicase involved in rDNA replication and Ty1 transposition; binds to and suppresses DNA damage at G4 motifs in vivo; relieves replication fork pauses at telomeric regions; deletion or inactivation of helicase function suppresses chromosome instability (CIN) associated with centromere or kinetochore defects; structurally and functionally related to Pif1p","termid":"PBO:0113102"}


id: GO:0061664
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of Pup to a substrate protein via the reaction X-Pup + S = X + S-Pup, where X is either an E2 or E3 enzyme, the X-Pup linkage is a thioester bond, and the S-Pup linkage is an isopeptide bond between the C-terminal amino acid of Pup and the epsilon-amino group of lysine residues in the substrate.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like protein ligase activity","termid":"GO:0061659"},{"relation_name":"is_a","term_name":"Pup transferase activity","termid":"GO:0072496"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016746","GO:0019787","GO:0003824","GO:0003674","GO:0140096","GO:0016740"],"is_obsolete":false,"name":"Pup ligase activity","synonyms":[{"name":"E3","type":"broad"}],"termid":"GO:0061664"}


id: PBO:0075713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRGAP3 antisense RNA 2","termid":"PBO:0075713"}


id: PBO:0040475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATRX chromatin remodeler","termid":"PBO:0040475"}


id: PBO:0043888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"corticotropin releasing hormone binding protein","termid":"PBO:0043888"}


id: GO:0052242
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism in response to a specific chemical concentration gradient within a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete chemotaxis in other organism involved in symbiotic interaction (obsolete GO:0052242)","synonyms":[{"name":"chemotaxis in other organism during symbiotic interaction","type":"related"},{"name":"chemotaxis within other organism during symbiotic interaction","type":"exact"}],"termid":"GO:0052242"}


id: GO:0102366
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 7-beta-hydroxytaxusin + NADPH + O2 + H+ = 2alpha, 7-beta-dihydroxytaxusin + NADP + H2O.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 7-beta-hydroxytaxusin 2-alpha-hydroxylase activity (obsolete GO:0102366)","termid":"GO:0102366"}


id: PBO:0025502
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate carboxylase deficiency","termid":"PBO:0025502"}


id: PBO:0080180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VDAC2 pseudogene 1","termid":"PBO:0080180"}


id: PBO:0088927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MEMO1 family, human MEMO1 ortholog, ancient conserved protein, in some organisms this domain is present with ammecr1 which interacts with mediator complex and is implicated in transcription, implicated in signalling and localization to the plasma membrane","termid":"PBO:0088927"}


id: PBO:0086275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a possible role in phospholipid biosynthesis; null mutant displays an inositol-excreting phenotype that is suppressed by exogenous choline; protein abundance increases in response to DNA replication stress","termid":"PBO:0086275"}


id: PBO:0091157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanine/xanthine/hypoxanthine phosphoribosyltransferase Hpt1","termid":"PBO:0091157"}


id: PBO:0048830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit gamma 14","termid":"PBO:0048830"}


id: PBO:0090712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase SIN pathway Cdc7","termid":"PBO:0090712"}


id: GO:0071966
data:
  {"annotated_genes":["SJAG_03123","SJAG_02192","SJAG_01290","SJAG_00424","SJAG_02278","SJAG_01453","SJAG_01028","SJAG_00218","SJAG_04666","SJAG_04184","SJAG_02916","SJAG_00876","SJAG_01288","SJAG_01835","SJAG_04327","SJAG_01171","SJAG_03057","SJAG_04771","SJAG_00610","SJAG_03587","SJAG_05001","SJAG_04483","SJAG_05285","SJAG_02222","SJAG_03646","SJAG_04236","SJAG_04864"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84806,102712],"is_not":false,"summary":null,"term":"GO:0071966"},{"annotations":[90533],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034413"},{"annotations":[105321],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034412"},{"annotations":[110396,105096,113783,85247,100218],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070600"},{"annotations":[84184,109187,102126,105323,111828,87659,87669,103804],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071970"},{"annotations":[104633,98687],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070880"},{"annotations":[97993,97994,104092,91171],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070879"},{"annotations":[102128],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051278"},{"annotations":[83632,88492],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0140748"},{"annotations":[88498,85539,91006,98895],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0070610"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving the polysaccharides which make up the fungal-type cell wall.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall polysaccharide metabolic process","termid":"GO:0010383"},{"relation_name":"part_of","term_name":"fungal-type cell wall organization or biogenesis","termid":"GO:0071852"}],"gene_count":27,"genes_by_uniquename":{"SJAG_00218":null,"SJAG_00424":null,"SJAG_00610":null,"SJAG_00876":null,"SJAG_01028":null,"SJAG_01171":null,"SJAG_01288":null,"SJAG_01290":null,"SJAG_01453":null,"SJAG_01835":null,"SJAG_02192":null,"SJAG_02222":null,"SJAG_02278":null,"SJAG_02916":null,"SJAG_03057":null,"SJAG_03123":null,"SJAG_03587":null,"SJAG_03646":null,"SJAG_04184":null,"SJAG_04236":null,"SJAG_04327":null,"SJAG_04483":null,"SJAG_04666":null,"SJAG_04771":null,"SJAG_04864":null,"SJAG_05001":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0008150","GO:0005975","GO:0071554"],"is_obsolete":false,"name":"fungal-type cell wall polysaccharide metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0071966","terms_by_termid":{"GO:0034412":null,"GO:0034413":null,"GO:0051278":null,"GO:0070600":null,"GO:0070610":null,"GO:0070879":null,"GO:0070880":null,"GO:0071966":null,"GO:0071970":null,"GO:0140748":null}}


id: FYPO:0004863
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form microtubules that are longer than normal and are curved, i.e. follow a smooth bend rather than a straight line.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"long microtubules","termid":"FYPO:0000055"},{"relation_name":"has_part","term_name":"curved microtubules","termid":"FYPO:0004862"},{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton morphology during vegetative growth","termid":"FYPO:0001418"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0002399"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0001320","FYPO:0002399","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"long curved microtubules","synonyms":[{"name":"elongated curved microtubules","type":"exact"},{"name":"long curved microtubules during mitotic cell cycle","type":"related"},{"name":"long curved microtubules during vegetative growth","type":"exact"},{"name":"microtubule organization defects, long curved microtubules","type":"exact"}],"termid":"FYPO:0004863"}


id: SO:0002093
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variant that impacts the internal interactions of the resulting polypeptide structure.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3D_polypeptide_structure_variant","termid":"SO:0001599"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"structural_interaction_variant","synonyms":[{"name":"structural interaction variant","type":"exact"}],"termid":"SO:0002093"}


id: FYPO:0000499
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitophagy does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"},{"relation_name":"is_a","term_name":"abnormal mitophagy","termid":"FYPO:0007590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished mitophagy","synonyms":[{"name":"abolished autophagy of mitochondrion","type":"exact"},{"name":"absent mitophagy","type":"exact"},{"name":"mitophagy abolished","type":"exact"},{"name":"mitophagy: absent","type":"related"}],"termid":"FYPO:0000499"}


id: PBO:0067144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 192, pseudogene","termid":"PBO:0067144"}


id: GO:0051489
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the assembly of a filopodium, a thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of plasma membrane bounded cell projection assembly","termid":"GO:0120032"},{"relation_name":"regulates","term_name":"filopodium assembly","termid":"GO:0046847"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"regulation of filopodium assembly","synonyms":[{"name":"regulation of filopodia biosynthesis","type":"exact"},{"name":"regulation of filopodia formation","type":"exact"},{"name":"regulation of filopodium formation","type":"exact"}],"termid":"GO:0051489"}


id: PBO:0042579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase inhibitor 3","termid":"PBO:0042579"}


id: PBO:0111785
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ENTH/VHS domain protein","termid":"PBO:0111785"}


id: PBO:0085677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in pre-rRNA processing; associated with U3 snRNP; component of small ribosomal subunit (SSU) processosome; ortholog of the human U3-55k protein","termid":"PBO:0085677"}


id: PBO:0053881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1160","termid":"PBO:0053881"}


id: GO:0036398
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multi-protein complex containing at least the T-cell receptor complex and the LAT (linker for activation of T cells) scaffold protein. Also contains a variety of signaling proteins including co-receptors, kinases, phosphatases and adaptors such as CD8. Connects events on the plasma membrane to distal signaling cascades to ultimately modulate T cell biology.","definition_xrefs":["PMID:22426112","PMID:20107804","GOC:krc","PMID:17534068"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"TCR signalosome","synonyms":[{"name":"LAT signalosome","type":"exact"},{"name":"linker for activation of T cells signalosome","type":"exact"}],"termid":"GO:0036398"}


id: PBO:0083991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glutathione-dependent oxidoreductase; mitochondrial matrix protein involved at an early step in the biogenesis of iron-sulfur centers along with Bol1p; hydroperoxide and superoxide-radical responsive; monothiol glutaredoxin subfamily member along with Grx3p and Grx4p","termid":"PBO:0083991"}


id: PBO:0054525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1925","termid":"PBO:0054525"}


id: PBO:0110509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 66 member 1 like, pseudogene","termid":"PBO:0110509"}


id: PBO:0080292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 56 pseudogene","termid":"PBO:0080292"}


id: PBO:0001648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA snoR02 (predicted)","termid":"PBO:0001648"}


id: PBO:0044574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dopamine beta-hydroxylase","termid":"PBO:0044574"}


id: GO:0090128
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the extent of synapse maturation, the process that organizes a synapse so that it attains its fully functional state.","definition_xrefs":["GOC:tb","GOC:ascb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"is_a","term_name":"regulation of synapse organization","termid":"GO:0050807"},{"relation_name":"regulates","term_name":"synapse maturation","termid":"GO:0060074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of synapse maturation","termid":"GO:0090128"}


id: PBO:0028552
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_nucleus_during_mitosis","termid":"PBO:0028552"}


id: GO:0016702
data:
  {"annotated_genes":["SJAG_00519","SJAG_00309"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[108453],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010308"},{"annotations":[108454],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010309"},{"annotations":[85933],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0102672"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen","termid":"GO:0016701"},{"relation_name":"is_a","term_name":"dioxygenase activity","termid":"GO:0051213"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00309":null,"SJAG_00519":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9020274","EC:1.13.11.-","Reactome:R-HSA-2161907","Reactome:R-HSA-2161917","Reactome:R-HSA-9018880","Reactome:R-HSA-5164399","Reactome:R-HSA-9026918","Reactome:R-HSA-2161775","Reactome:R-HSA-9026408"],"termid":"GO:0016702","terms_by_termid":{"GO:0010308":null,"GO:0010309":null,"GO:0102672":null}}


id: GO:1903790
data:
  {"annotated_genes":["SJAG_00760"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[63286,111158],"is_not":false,"summary":null,"term":"GO:1903790"}]},"cv_name":"biological_process","definition":"The process in which a guanyl nucleotide is transported across a membrane.","definition_xrefs":["GOC:dph","GO_REF:0000069","GOC:TermGenie","GOC:vw","PMID:25320081"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanine nucleotide transport","termid":"GO:0001408"},{"relation_name":"is_a","term_name":"purine-containing compound transmembrane transport","termid":"GO:0072530"},{"relation_name":"is_a","term_name":"nucleotide transmembrane transport","termid":"GO:1901679"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00760":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"guanine nucleotide transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"guanyl nucleotide transmembrane transport","type":"exact"}],"termid":"GO:1903790","terms_by_termid":{"GO:1903790":null}}


id: GO:0030217
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex.","definition_xrefs":["GOC:jid","GOC:mah","GO_REF:0000022"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphocyte differentiation","termid":"GO:0030098"},{"relation_name":"is_a","term_name":"T cell activation","termid":"GO:0042110"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T cell differentiation","secondary_identifiers":["GO:0042112","GO:0046652"],"synonyms":[{"name":"T cell development","type":"related"},{"name":"T lymphocyte differentiation","type":"exact"},{"name":"T-cell differentiation","type":"exact"},{"name":"T-lymphocyte differentiation","type":"exact"}],"termid":"GO:0030217"}


id: PBO:0089043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial [2Fe-2S] cluster assembly and transfer glutaredoxin Grx5","termid":"PBO:0089043"}


id: PBO:0046889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 13 member A","termid":"PBO:0046889"}


id: PBO:0089038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein P1","termid":"PBO:0089038"}


id: GO:2001223
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of neuron migration.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell migration","termid":"GO:0030336"},{"relation_name":"is_a","term_name":"regulation of neuron migration","termid":"GO:2001222"},{"relation_name":"negatively_regulates","term_name":"neuron migration","termid":"GO:0001764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of neuron migration","synonyms":[{"name":"negative regulation of neuron chemotaxis","type":"exact"},{"name":"negative regulation of neuron guidance","type":"related"},{"name":"negative regulation of neuronal migration","type":"exact"}],"termid":"GO:2001223"}


id: GO:0060908
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The maintenance of the number of copies of extrachromosomal plasmid DNA.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasmid maintenance","termid":"GO:0006276"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"plasmid copy number maintenance","termid":"GO:0060908"}


id: PBO:0045978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EH domain containing 4","termid":"PBO:0045978"}


id: PBO:0040434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP8A1 divergent transcript","termid":"PBO:0040434"}


id: PBO:0004862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L13 (predicted)","termid":"PBO:0004862"}


id: PBO:0086528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved across S. cerevisiae strains; YPR014C is not an essential gene","termid":"PBO:0086528"}


id: FYPO:0001221
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the ratio of the nuclear volume to the total cell volume is in the same range as wild type (approximately 0.076-0.089).","definition_xrefs":["PMID:17998401","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative phenotype","termid":"FYPO:0001312"},{"relation_name":"is_a","term_name":"vegetative cell phenotype","termid":"FYPO:0001320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal nucleus:cytoplasm ratio","synonyms":[{"name":"normal nuclear:cytoplasmic ratio","type":"exact"},{"name":"normal nuclear:cytoplasmic volume ratio","type":"exact"},{"name":"normal nucleus:cell volume ratio","type":"exact"},{"name":"normal nucleus:cytoplasm ratio during mitotic cell cycle","type":"related"},{"name":"normal nucleus:cytoplasm ratio during vegetative growth","type":"exact"},{"name":"normal nucleus:cytoplasm volume ratio","type":"exact"}],"termid":"FYPO:0001221"}


id: GO:0034400
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A plastid found in senescing, formerly green tissues that is derived from a chloroplast that undergoes an organized developmental program of senescence.","definition_xrefs":["PMID:24668747","PMID:12654863"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid","termid":"GO:0009536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"gerontoplast","termid":"GO:0034400"}


id: PBO:0075449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermatogenesis associated 2 pseudogene 1","termid":"PBO:0075449"}


id: PBO:0081016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZBTB47 and NKTR antisense RNA 1","termid":"PBO:0081016"}


id: GO:0006110
data:
  {"annotated_genes":["SJAG_05314","SJAG_00685"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74987,72006],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045820"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of glycolysis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of purine nucleotide catabolic process","termid":"GO:0033121"},{"relation_name":"is_a","term_name":"regulation of generation of precursor metabolites and energy","termid":"GO:0043467"},{"relation_name":"is_a","term_name":"regulation of carbohydrate catabolic process","termid":"GO:0043470"},{"relation_name":"is_a","term_name":"regulation of ATP metabolic process","termid":"GO:1903578"},{"relation_name":"regulates","term_name":"glycolytic process","termid":"GO:0006096"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00685":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0006091","GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"regulation of glycolytic process","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["GO:0090525"],"synonyms":[{"name":"regulation of glycolysis involved in cellular glucose homeostasis","type":"exact"}],"termid":"GO:0006110","terms_by_termid":{"GO:0045820":null}}


id: GO:0008414
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a CDP-alcohol group from one compound to another.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring phosphorus-containing groups","termid":"GO:0016772"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"CDP-alcohol phosphotransferase activity","termid":"GO:0008414"}


id: PBO:0084990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADPH-dependent aldo-keto reductase; reduces multiple substrates including 2-methylbutyraldehyde and D,L-glyceraldehyde, expression is induced by osmotic and oxidative stress; functionally redundant with other aldo-keto reductases; protein abundance increases in response to DNA replication stress; YPR1 has a paralog, GCY1, that arose from the whole genome duplication; human homolog AKR1B1 can complement yeast null mutant","termid":"PBO:0084990"}


id: PBO:0080919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YWHAQ pseudogene 8","termid":"PBO:0080919"}


id: GO:1901654
data:
  {"annotated_genes":["SJAG_01162","SJAG_02960"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101070],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140041"},{"annotations":[101249],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036245"}]},"cv_name":"biological_process","definition":"A response that results in a state of tolerance to ketone.","definition_xrefs":["GOC:mengo_curators","PMID:23356676"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01162":null,"SJAG_02960":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to ketone","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1990369"],"synonyms":[{"name":"process resulting in tolerance to ketone","type":"narrow"}],"termid":"GO:1901654","terms_by_termid":{"GO:0036245":null,"GO:0140041":null}}


id: PBO:0082930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic and mitochondrial glycyl-tRNA synthase; ligates glycine to the cognate anticodon-bearing tRNA; transcription termination factor that may interact with the 3'-end of pre-mRNA to promote 3'-end formation; GRS1 has a paralog, GRS2, that arose from the whole genome duplication; human homolog GARS implicated in Charcot-Marie-Tooth disease, can complement yeast null mutant","termid":"PBO:0082930"}


id: FYPO:0007970
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a higher rate, or speed, than normal.","definition_xrefs":["PMID:35293864","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal rate of microtubule polymerization during vegetative growth","termid":"FYPO:0007955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000054"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000054","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased rate of microtuble polymerization during vegetative growth","termid":"FYPO:0007970"}


id: PBO:0042900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement factor H related 4","termid":"PBO:0042900"}


id: GO:0031721
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a hemoglobin alpha chain.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemoglobin binding","termid":"GO:0030492"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"hemoglobin alpha binding","termid":"GO:0031721"}


id: PBO:0052795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 35","termid":"PBO:0052795"}


id: PBO:0064165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group IVC","termid":"PBO:0064165"}


id: PBO:0072852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretion associated Ras related GTPase 1A pseudogene 2","termid":"PBO:0072852"}


id: SO:0000078
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transcript that is polycistronic.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"polycistronic","termid":"SO:0000880"},{"relation_name":"is_a","term_name":"transcript","termid":"SO:0000673"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polycistronic_transcript","synonyms":[{"name":"polycistronic transcript","type":"exact"}],"termid":"SO:0000078"}


id: FYPO:0007699
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a smaller than normal proportion of cells in a homothallic population undergoes conjugation with non-sister cells.","definition_xrefs":["PMID:30279276","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased conjugation frequency","termid":"FYPO:0000303"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"decreased frequency of conjugation with non-sister cells","synonyms":[{"name":"decreased conjugation frequency with non-sister cells","type":"exact"},{"name":"decreased frequency of mating with non-sister cells","type":"exact"},{"name":"decreased mating efficiency with non-sister cells","type":"related"},{"name":"decreased mating frequency with non-sister cells","type":"exact"}],"termid":"FYPO:0007699"}


id: GO:0019741
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of pentacyclic triterpenoid compounds, terpenoids with six isoprene units and 5 carbon rings.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triterpenoid catabolic process","termid":"GO:0016105"},{"relation_name":"is_a","term_name":"pentacyclic triterpenoid metabolic process","termid":"GO:0019742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"pentacyclic triterpenoid catabolic process","synonyms":[{"name":"pentacyclic triterpenoid breakdown","type":"exact"},{"name":"pentacyclic triterpenoid catabolism","type":"exact"},{"name":"pentacyclic triterpenoid degradation","type":"exact"}],"termid":"GO:0019741"}


id: GO:0050392
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-vicianin + H2O = mandelonitrile + vicianose.","definition_xrefs":["RHEA:14041","EC:3.2.1.119"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucosidase activity","termid":"GO:0008422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016798","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"vicianin beta-glucosidase activity","secondary_identifiers":["KEGG_REACTION:R03642","MetaCyc:VICIANIN-BETA-GLUCOSIDASE-RXN"],"synonyms":[{"name":"(R)-vicianin beta-D-glucohydrolase activity","type":"related"},{"name":"vicianin b-glucosidase activity","type":"exact"},{"name":"vicianin hydrolase activity","type":"related"}],"termid":"GO:0050392"}


id: GO:0052908
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4 S-adenosyl-L-methionine + adenine(1518)/adenine(1519) in 16S rRNA = 4 S-adenosyl-L-homocysteine + N(6)-dimethyladenine(1518)/N(6)-dimethyladenine(1519) in 16S rRNA.","definition_xrefs":["RHEA:19609"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA (adenine-N6,N6-)-dimethyltransferase activity","termid":"GO:0000179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0140098","GO:0016741","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity","secondary_identifiers":["EC:2.1.1.182","MetaCyc:RXN-11633"],"synonyms":[{"name":"S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase activity","type":"related"}],"termid":"GO:0052908"}


id: PBO:0003088
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"expressed during S phase","termid":"PBO:0003088"}


id: PBO:0042699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CUGBP Elav-like family member 1","termid":"PBO:0042699"}


id: PBO:0064252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology domain containing A1","termid":"PBO:0064252"}


id: GO:0018868
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 2-aminobenzenesulfonate, aniline-o-sulfonic acid, an aromatic sulfonate used in organic synthesis and in the manufacture of various dyes and medicines.","definition_xrefs":["UM-BBD_pathwayID:abs"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic acid metabolic process","termid":"GO:0006082"},{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"amine metabolic process","termid":"GO:0009308"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0006790","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"2-aminobenzenesulfonate metabolic process","synonyms":[{"name":"2-aminobenzenesulfonate metabolism","type":"exact"},{"name":"2-aminobenzenesulphonate metabolic process","type":"exact"},{"name":"2-aminobenzenesulphonate metabolism","type":"exact"}],"termid":"GO:0018868"}


id: FYPO:0000558
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of re-entry into the mitotic cell cycle after pheromone arrest is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal re-entry into mitotic cell cycle after pheromone arrest","termid":"FYPO:0000555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0005447","FYPO:0000298","FYPO:0000002"],"is_obsolete":false,"name":"increased re-entry into mitotic cell cycle after pheromone arrest","synonyms":[{"name":"increased recovery from pheromone-induced cell cycle arrest","type":"exact"},{"name":"recovery from pheromone-induced cell cycle arrest: increased","type":"related"}],"termid":"FYPO:0000558"}


id: GO:0106344
data:
  {"annotated_genes":["SJAG_04866"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110030],"is_not":false,"summary":null,"term":"GO:0106344"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 Fe(3+) + 4 H2O + L-histidyl-[4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate synthase] + N(6)-(pyridoxal phosphate)-L-lysyl-[4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate synthase] = (2S)-2-amino-5-hydroxy-4-oxopentanoyl-[4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate synthase] + 3-oxopropanoate + 4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine + 2 Fe(2+) + 2 H+ + L-lysyl-[4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate synthase].","definition_xrefs":["PMID:22568620","RHEA:65756"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity","termid":"GO:0016740"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04866":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate synthase activity from histidine and PLP","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106344","terms_by_termid":{"GO:0106344":null}}


id: GO:0140991
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cytoplasmic post-transcriptional gene silencing pathway in which piRNAs direct the cleavage of target mRNAs. The target mRNA, often transcribed from a transposable element, is destabilized by the activity of a PIWI class endonuclease within the piRNA-induced silencing complex. This may also be accompanied by mRNA deadenylation and decapping.","definition_xrefs":["PMID:29281264","PMID:33419460"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory ncRNA-mediated post-transcriptional gene silencing","termid":"GO:0035194"},{"relation_name":"is_a","term_name":"mRNA destabilization","termid":"GO:0061157"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"positively_regulates","termid":"GO:0016071"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0016071"],"is_obsolete":false,"name":"piRNA-mediated gene silencing by mRNA destabilization","termid":"GO:0140991"}


id: PBO:0089849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S18","termid":"PBO:0089849"}


id: PBO:0034614
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-swollen_vegetative_cell_with_normal_cell_length","termid":"PBO:0034614"}


id: PBO:0087895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription factor; activated by proteolytic processing in response to signals from the SPS sensor system for external amino acids; activates transcription of amino acid permease genes; STP2 has a paralog, STP1, that arose from the whole genome duplication","termid":"PBO:0087895"}


id: PBO:0043517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CNTNAP5 divergent transcript","termid":"PBO:0043517"}


id: GO:0045994
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involving iron that activates or increases the rate of translational initiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of translational initiation by iron","termid":"GO:0006447"},{"relation_name":"is_a","term_name":"positive regulation of translational initiation","termid":"GO:0045948"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of translational initiation by iron","synonyms":[{"name":"activation of translational initiation by iron","type":"narrow"},{"name":"stimulation of translational initiation by iron","type":"narrow"},{"name":"up regulation of translational initiation by iron","type":"exact"},{"name":"up-regulation of translational initiation by iron","type":"exact"},{"name":"upregulation of translational initiation by iron","type":"exact"}],"termid":"GO:0045994"}


id: PBO:0041007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BLOC-1 related complex subunit 8","termid":"PBO:0041007"}


id: PBO:0090925
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dipeptidase Dug1","termid":"PBO:0090925"}


id: GO:0046101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of hypoxanthine, 6-hydroxy purine, an intermediate in the degradation of adenylate. Its ribonucleoside is known as inosine and its ribonucleotide as inosinate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleobase biosynthetic process","termid":"GO:0009113"},{"relation_name":"is_a","term_name":"hypoxanthine metabolic process","termid":"GO:0046100"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"hypoxanthine biosynthetic process","synonyms":[{"name":"hypoxanthine anabolism","type":"exact"},{"name":"hypoxanthine biosynthesis","type":"exact"},{"name":"hypoxanthine formation","type":"exact"},{"name":"hypoxanthine synthesis","type":"exact"}],"termid":"GO:0046101"}


id: PR:O74774
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An HBS1-like protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongation factor 1 alpha-like protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC25B2.01","secondary_identifiers":["UniProtKB:O74774"],"synonyms":[{"name":"SPBC25B2.01","type":"related"},{"name":"Spom972h-HBS1L","type":"exact"}],"termid":"PR:O74774"}


id: PBO:0073353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family B member 12","termid":"PBO:0073353"}


id: PBO:0031342
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_hydroxyurea","termid":"PBO:0031342"}


id: GO:0150127
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of interleukin-33 production.","definition_xrefs":["GOC:aruk","PMID:29778524"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"interleukin-33 production","termid":"GO:0072639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of interleukin-33 production","secondary_identifiers":["GO:0150123","GO:0150130"],"synonyms":[{"name":"regulation of interleukin-33 biosynthetic process","type":"narrow"},{"name":"regulation of interleukin-33 secretion","type":"narrow"}],"termid":"GO:0150127"}


id: PBO:0017598
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mei2 Interacting Protein","termid":"PBO:0017598"}


id: GO:0030258
data:
  {"annotated_genes":["SJAG_04792","SJAG_00706","SJAG_00413","SJAG_02788"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100021],"is_not":false,"summary":null,"term":"GO:0030258"},{"annotations":[107854],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001561"},{"annotations":[102546],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006635"},{"annotations":[88275],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019395"}]},"cv_name":"biological_process","definition":"The covalent alteration of one or more fatty acids in a lipid, resulting in a change in the properties of the lipid.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular lipid metabolic process","termid":"GO:0044255"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00413":null,"SJAG_00706":null,"SJAG_02788":null,"SJAG_04792":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"lipid modification","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0030258","terms_by_termid":{"GO:0001561":null,"GO:0006635":null,"GO:0019395":null,"GO:0030258":null}}


id: GO:0061945
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of protein K-48-linked ubiquitination, a protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is added to a protein. K48-linked ubiquitination targets the substrate protein for degradation.","definition_xrefs":["PMID:23460740"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein polyubiquitination","termid":"GO:1902914"},{"relation_name":"regulates","term_name":"protein K48-linked ubiquitination","termid":"GO:0070936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0070647"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0070647"],"is_obsolete":false,"name":"regulation of protein K48-linked ubiquitination","termid":"GO:0061945"}


id: GO:0019478
data:
  {"annotated_genes":["SJAG_02496","SJAG_04827"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110757],"is_not":false,"summary":null,"term":"GO:0019478"},{"annotations":[83714],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036088"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of D-amino acids, the D-enantiomers of amino acids.","definition_xrefs":["GOC:ai","GOC:jsg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-amino acid metabolic process","termid":"GO:0046416"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid catabolic process","termid":"GO:0170044"},{"relation_name":"is_a","term_name":"alpha-amino acid catabolic process","termid":"GO:1901606"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02496":null,"SJAG_04827":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"D-amino acid catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"D-amino acid breakdown","type":"exact"},{"name":"D-amino acid catabolism","type":"exact"},{"name":"D-amino acid degradation","type":"exact"}],"termid":"GO:0019478","terms_by_termid":{"GO:0019478":null,"GO:0036088":null}}


id: FYPO:0000569
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mating projection assembly does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal shmoo formation","termid":"FYPO:0000568"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000301"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000301","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished shmoo formation","synonyms":[{"name":"shmoo formation abolished","type":"exact"},{"name":"shmoo formation: absent","type":"related"},{"name":"abolished conjugation tube formation","type":"exact"},{"name":"absent shmoo formation","type":"exact"},{"name":"mating projection assembly abolished","type":"exact"},{"name":"mating projection formation abolished","type":"exact"},{"name":"shmoo assembly abolished","type":"exact"}],"termid":"FYPO:0000569"}


id: PBO:0057086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 182","termid":"PBO:0057086"}


id: PBO:0027173
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_phleomycin","termid":"PBO:0027173"}


id: PBO:0068045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 350","termid":"PBO:0068045"}


id: PBO:0044439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 4 subfamily F member 8","termid":"PBO:0044439"}


id: PBO:0045504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DSP antisense RNA 1","termid":"PBO:0045504"}


id: FYPO:0006231
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of translational initiation in the cytoplasm is decreased during a cellular response to osmotic stress.","definition_xrefs":["PMID:16278445","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cytoplasmic translational initiation","termid":"FYPO:0003125"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0006551","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"decreased cytoplasmic translational initiation during cellular response to osmotic stress","synonyms":[{"name":"decreased cytoplasmic translation initiation during cellular response to osmotic stress","type":"exact"},{"name":"decreased cytoplasmic translational initiation during cellular response to osmotic stress during mitotic cell cycle","type":"related"},{"name":"decreased cytoplasmic translational initiation during cellular response to osmotic stress during vegetative growth","type":"exact"},{"name":"reduced cytoplasmic translational initiation during cellular response to osmotic stress","type":"exact"}],"termid":"FYPO:0006231"}


id: GO:1905469
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of clathrin-coated pit assembly.","definition_xrefs":["PMID:26589353","GO_REF:0000058","GOC:TermGenie","GOC:PARL","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of clathrin-coated pit assembly (obsolete GO:1905469)","synonyms":[{"name":"down regulation of clathrin-coated pit assembly","type":"exact"},{"name":"down regulation of clathrin-coated pit formation","type":"exact"},{"name":"down regulation of coated pit assembly","type":"exact"},{"name":"down regulation of coated pit formation","type":"exact"},{"name":"down-regulation of clathrin-coated pit assembly","type":"exact"},{"name":"down-regulation of clathrin-coated pit formation","type":"exact"},{"name":"down-regulation of coated pit assembly","type":"exact"},{"name":"down-regulation of coated pit formation","type":"exact"},{"name":"downregulation of clathrin-coated pit assembly","type":"exact"},{"name":"downregulation of clathrin-coated pit formation","type":"exact"},{"name":"downregulation of coated pit assembly","type":"exact"},{"name":"downregulation of coated pit formation","type":"exact"},{"name":"inhibition of clathrin-coated pit assembly","type":"narrow"},{"name":"inhibition of clathrin-coated pit formation","type":"narrow"},{"name":"inhibition of coated pit assembly","type":"narrow"},{"name":"inhibition of coated pit formation","type":"narrow"},{"name":"negative regulation of clathrin-coated pit formation","type":"exact"},{"name":"negative regulation of coated pit assembly","type":"exact"},{"name":"negative regulation of coated pit formation","type":"exact"}],"termid":"GO:1905469"}


id: PBO:0067320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 408, pseudogene","termid":"PBO:0067320"}


id: PBO:0042382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD248 molecule","termid":"PBO:0042382"}


id: PR:P0CT78
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl1102 gene.","definition_xrefs":["UniProtKB:P0CT78","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L11-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17G9.10","synonyms":[{"name":"Spom972h-rpl1102","type":"exact"}],"termid":"PR:P0CT78"}


id: PBO:0057619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1184-2","termid":"PBO:0057619"}


id: PBO:0085562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein containing SH3-domains; involved in establishing cell polarity and morphogenesis; functions as a scaffold protein for complexes that include Cdc24p, Ste5p, Ste20p, and Rsr1p","termid":"PBO:0085562"}


id: PBO:0002843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TFIIIC subunit Sfc7 (predicted)","termid":"PBO:0002843"}


id: PBO:0003990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO E1-like activator enzyme Fub2 (predicted)","termid":"PBO:0003990"}


id: GO:0033865
data:
  {"annotated_genes":["SJAG_03813","SJAG_04627","SJAG_01474","SJAG_04895","SJAG_01139","SJAG_04288","SJAG_04865","SJAG_03715","SJAG_01187","SJAG_04007","SJAG_01524","SJAG_02769","SJAG_03290","SJAG_04499","SJAG_00427","SJAG_02247","SJAG_03731","SJAG_03909","SJAG_00982","SJAG_00947","SJAG_03313","SJAG_05277","SJAG_03471","SJAG_02380","SJAG_03064","SJAG_03349","SJAG_01989","SJAG_00902","SJAG_02741","SJAG_02158","SJAG_02006","SJAG_01402","SJAG_00866"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89318,94440],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006085"},{"annotations":[112109],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019427"},{"annotations":[113057],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990181"},{"annotations":[104612,95082,83543,114444,110254,91073],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006086"},{"annotations":[111765,110360,87517,94106],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006084"},{"annotations":[104732,92882],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006637"},{"annotations":[88295,85476,106624,113058,110849],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015937"},{"annotations":[95892],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015938"},{"annotations":[84812,110914,90515,92657],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019287"},{"annotations":[103498],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035338"},{"annotations":[109439,101625],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035336"},{"annotations":[94419],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001295"},{"annotations":[107393,111483],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:2001211"},{"annotations":[110981,86014],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006104"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving a nucleoside bisphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar.","definition_xrefs":["GOC:pde","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside phosphate metabolic process","termid":"GO:0006753"}],"gene_count":33,"genes_by_uniquename":{"SJAG_00427":null,"SJAG_00866":null,"SJAG_00902":null,"SJAG_00947":null,"SJAG_00982":null,"SJAG_01139":null,"SJAG_01187":null,"SJAG_01402":null,"SJAG_01474":null,"SJAG_01524":null,"SJAG_01989":null,"SJAG_02006":null,"SJAG_02158":null,"SJAG_02247":null,"SJAG_02380":null,"SJAG_02741":null,"SJAG_02769":null,"SJAG_03064":null,"SJAG_03290":null,"SJAG_03313":null,"SJAG_03349":null,"SJAG_03471":null,"SJAG_03715":null,"SJAG_03731":null,"SJAG_03813":null,"SJAG_03909":null,"SJAG_04007":null,"SJAG_04288":null,"SJAG_04499":null,"SJAG_04627":null,"SJAG_04865":null,"SJAG_04895":null,"SJAG_05277":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"nucleoside bisphosphate metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"nucleoside bisphosphate metabolism","type":"exact"}],"termid":"GO:0033865","terms_by_termid":{"GO:0006084":null,"GO:0006085":null,"GO:0006086":null,"GO:0006104":null,"GO:0006637":null,"GO:0015937":null,"GO:0015938":null,"GO:0019287":null,"GO:0019427":null,"GO:0035336":null,"GO:0035338":null,"GO:1990181":null,"GO:2001211":null,"GO:2001295":null}}


id: GO:0061609
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-D-fructose-1-phosphate = D-glyceraldehyde + dihydroxyacetone phosphate.","definition_xrefs":["GOC:dph","GOC:glycolysis","ISBN:0201090910","RHEA:30851"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"fructose-1-phosphate aldolase activity","secondary_identifiers":["Reactome:R-HSA-5656438","Reactome:R-HSA-70342","MetaCyc:RXN-8631"],"termid":"GO:0061609"}


id: PBO:0038339
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_substance_added","termid":"PBO:0038339"}


id: FYPO:0000889
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 in centromere outer repeat regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K9 trimethylation at centromere during vegetative growth","termid":"FYPO:0000880"},{"relation_name":"is_a","term_name":"abnormal histone H3-K9 trimethylation at centromere outer repeat during vegetative growth","termid":"FYPO:0000885"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0000002","FYPO:0002494","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased histone H3-K9 trimethylation at centromere outer repeat during vegetative growth","synonyms":[{"name":"increased histone H3 K9 trimethylation at centromere outer repeat during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 trimethylation at centromere otr during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 trimethylation at centromere outer repeat during mitotic cell cycle","type":"related"},{"name":"increased histone H3-K9 trimethylation at centromeric outer repeat region during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 trimethylation at pericentric region during vegetative growth","type":"related"},{"name":"increased histone H3-K9 trimethylation at pericentromeric region during vegetative growth","type":"related"},{"name":"increased histone H3K9 trimethylation at centromere outer repeat during vegetative growth","type":"exact"},{"name":"increased histone H3K9me3 at centromere outer repeat during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 trimethylation at centromere outer repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0000889"}


id: PBO:0056851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microsomal glutathione S-transferase 3","termid":"PBO:0056851"}


id: FYPO:0002792
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell contains more, but smaller, vacuoles than normal during a cellular response to a hypotonic environment.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"lipid droplets present in spore cytoplasm in decreased numbers, mislocalized to ascus epiplasm","termid":"FYPO:0006053"},{"relation_name":"is_a","term_name":"small vacuoles present in increased numbers","termid":"FYPO:0002258"},{"relation_name":"output_of","term_name":"abnormal vacuole fusion during cellular hypotonic response","termid":"FYPO:0004483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"small vacuoles present in increased numbers during cellular hypotonic response","synonyms":[{"name":"fragmented vacuoles during cellular hypotonic response","type":"related"},{"name":"small vacuoles present in greater numbers during cellular hypotonic response","type":"exact"},{"name":"small vacuoles present in increased numbers during cellular hypotonic response during mitotic cell cycle","type":"related"},{"name":"small vacuoles present in increased numbers during cellular hypotonic response during vegetative growth","type":"exact"},{"name":"small vacuoles present in increased numbers during hypotonic stress","type":"exact"},{"name":"vacuoles present in increased numbers, with decreased vacuole size, during cellular hypotonic response","type":"exact"}],"termid":"FYPO:0002792"}


id: GO:0098565
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side (leaflet) of the endosome membrane that faces the lumen.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lumenal side of membrane","termid":"GO:0098576"},{"relation_name":"part_of","term_name":"endosome membrane","termid":"GO:0010008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005768"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0005768","GO:0031410"],"is_obsolete":false,"name":"lumenal side of endosome membrane","synonyms":[{"name":"internal leaflet of endosome membrane","type":"exact"},{"name":"internal side of endosome membrane","type":"exact"}],"termid":"GO:0098565"}


id: PBO:0051305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1/OR-3 (pseudogene)","termid":"PBO:0051305"}


id: PBO:0006186
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_upstream_or_downstream_target","termid":"PBO:0006186"}


