# terms

id: GO:1901393
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of transforming growth factor beta1 activation.","definition_xrefs":["GOC:sl","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transforming growth factor beta1 activation (obsolete GO:1901393)","synonyms":[{"name":"down regulation of L-TGF-beta 1 activation","type":"exact"},{"name":"down regulation of TGF-beta 1 activation","type":"exact"},{"name":"down regulation of TGFB1 activation","type":"exact"},{"name":"down regulation of TGFbeta 1 activation","type":"exact"},{"name":"down regulation of latent-TGF-beta1 activation","type":"exact"},{"name":"down regulation of transforming growth factor beta1 activation","type":"exact"},{"name":"down regulation of transforming growth factor-beta1 activation","type":"exact"},{"name":"down-regulation of L-TGF-beta 1 activation","type":"exact"},{"name":"down-regulation of TGF-beta 1 activation","type":"exact"},{"name":"down-regulation of TGFB1 activation","type":"exact"},{"name":"down-regulation of TGFbeta 1 activation","type":"exact"},{"name":"down-regulation of latent-TGF-beta1 activation","type":"exact"},{"name":"down-regulation of transforming growth factor beta1 activation","type":"exact"},{"name":"down-regulation of transforming growth factor-beta1 activation","type":"exact"},{"name":"downregulation of L-TGF-beta 1 activation","type":"exact"},{"name":"downregulation of TGF-beta 1 activation","type":"exact"},{"name":"downregulation of TGFB1 activation","type":"exact"},{"name":"downregulation of TGFbeta 1 activation","type":"exact"},{"name":"downregulation of latent-TGF-beta1 activation","type":"exact"},{"name":"downregulation of transforming growth factor beta1 activation","type":"exact"},{"name":"downregulation of transforming growth factor-beta1 activation","type":"exact"},{"name":"inhibition of L-TGF-beta 1 activation","type":"exact"},{"name":"inhibition of TGF-beta 1 activation","type":"exact"},{"name":"inhibition of TGFB1 activation","type":"exact"},{"name":"inhibition of TGFbeta 1 activation","type":"exact"},{"name":"inhibition of latent-TGF-beta1 activation","type":"exact"},{"name":"inhibition of transforming growth factor beta1 activation","type":"narrow"},{"name":"inhibition of transforming growth factor-beta1 activation","type":"exact"},{"name":"negative regulation of L-TGF-beta 1 activation","type":"exact"},{"name":"negative regulation of TGF-beta 1 activation","type":"exact"},{"name":"negative regulation of TGFB1 activation","type":"exact"},{"name":"negative regulation of TGFbeta 1 activation","type":"exact"},{"name":"negative regulation of latent-TGF-beta1 activation","type":"exact"},{"name":"negative regulation of transforming growth factor-beta1 activation","type":"exact"}],"termid":"GO:1901393"}


id: PBO:0066199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 17","termid":"PBO:0066199"}


id: GO:0102832
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: verbascose + alpha-D-galactosyl-(1->3)-1D-myo-inositol = ajugose + myo-inositol.","definition_xrefs":["GOC:pz","PMID:11675396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016757"],"is_obsolete":false,"name":"verbascose galactinol:ajugose galactosyltransferase activity","secondary_identifiers":["MetaCyc:RXN-8288"],"termid":"GO:0102832"}


id: PBO:0061910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 1 subfamily AB member 1 pseudogene","termid":"PBO:0061910"}


id: PBO:0090317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal peptidase subunit Spc3","termid":"PBO:0090317"}


id: PBO:0000909
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RDRC and RITS complexes associate together, and with non coding centromeric RNA in a Dcr1 (hence siRNA) and Clr4 dependent manner","termid":"PBO:0000909"}


id: GO:0016742
data:
  {"annotated_genes":["SJAG_04681","SJAG_01766","SJAG_01368","SJAG_02901","SJAG_03641","SJAG_01814","SJAG_05200","SJAG_03914"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94765],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003864"},{"annotations":[109037,92448],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004047"},{"annotations":[87350,90538],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004372"},{"annotations":[87050],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004479"},{"annotations":[114971],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004643"},{"annotations":[113360],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004644"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a hydroxymethyl- or formyl group from one compound (donor) to another (acceptor).","definition_xrefs":["EC:2.1.2.-","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring one-carbon groups","termid":"GO:0016741"}],"gene_count":8,"genes_by_uniquename":{"SJAG_01368":null,"SJAG_01766":null,"SJAG_01814":null,"SJAG_02901":null,"SJAG_03641":null,"SJAG_03914":null,"SJAG_04681":null,"SJAG_05200":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0016741","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"hydroxymethyl-, formyl- and related transferase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0016742","terms_by_termid":{"GO:0003864":null,"GO:0004047":null,"GO:0004372":null,"GO:0004479":null,"GO:0004643":null,"GO:0004644":null}}


id: PBO:0011088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase (predicted)","termid":"PBO:0011088"}


id: GO:1905519
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of presynaptic active zone assembly.","definition_xrefs":["GOC:rl","GOC:TermGenie","PMID:15797875","GO_REF:0000058","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of presynaptic active zone assembly","termid":"GO:1905518"},{"relation_name":"is_a","term_name":"negative regulation of presynapse assembly","termid":"GO:1905607"},{"relation_name":"negatively_regulates","term_name":"presynaptic active zone assembly","termid":"GO:1904071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"negative regulation of presynaptic active zone assembly","synonyms":[{"name":"down regulation of pre-synaptic active zone assembly","type":"exact"},{"name":"down regulation of pre-synaptic active zone component assembly","type":"narrow"},{"name":"down regulation of pre-synaptic active zone component formation","type":"narrow"},{"name":"down regulation of pre-synaptic active zone formation","type":"exact"},{"name":"down regulation of presynaptic active zone assembly","type":"exact"},{"name":"down regulation of presynaptic active zone formation","type":"exact"},{"name":"down-regulation of pre-synaptic active zone assembly","type":"exact"},{"name":"down-regulation of pre-synaptic active zone component assembly","type":"narrow"},{"name":"down-regulation of pre-synaptic active zone component formation","type":"narrow"},{"name":"down-regulation of pre-synaptic active zone formation","type":"exact"},{"name":"down-regulation of presynaptic active zone assembly","type":"exact"},{"name":"down-regulation of presynaptic active zone formation","type":"exact"},{"name":"downregulation of pre-synaptic active zone assembly","type":"exact"},{"name":"downregulation of pre-synaptic active zone component assembly","type":"narrow"},{"name":"downregulation of pre-synaptic active zone component formation","type":"narrow"},{"name":"downregulation of pre-synaptic active zone formation","type":"exact"},{"name":"downregulation of presynaptic active zone assembly","type":"exact"},{"name":"downregulation of presynaptic active zone formation","type":"exact"},{"name":"inhibition of pre-synaptic active zone assembly","type":"narrow"},{"name":"inhibition of pre-synaptic active zone component assembly","type":"narrow"},{"name":"inhibition of pre-synaptic active zone component formation","type":"narrow"},{"name":"inhibition of pre-synaptic active zone formation","type":"narrow"},{"name":"inhibition of presynaptic active zone assembly","type":"narrow"},{"name":"inhibition of presynaptic active zone formation","type":"narrow"},{"name":"negative regulation of pre-synaptic active zone assembly","type":"exact"},{"name":"negative regulation of pre-synaptic active zone component assembly","type":"narrow"},{"name":"negative regulation of pre-synaptic active zone component formation","type":"narrow"},{"name":"negative regulation of pre-synaptic active zone formation","type":"exact"},{"name":"negative regulation of presynaptic active zone formation","type":"exact"}],"termid":"GO:1905519"}


id: GO:1900766
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of emericellin.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"emericellin metabolic process","termid":"GO:1900764"},{"relation_name":"is_a","term_name":"ether biosynthetic process","termid":"GO:1901503"},{"relation_name":"is_a","term_name":"xanthone-containing compound biosynthetic process","termid":"GO:2001307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"emericellin biosynthetic process","synonyms":[{"name":"Variecoxanthone B anabolism","type":"related"},{"name":"Variecoxanthone B biosynthesis","type":"related"},{"name":"Variecoxanthone B biosynthetic process","type":"related"},{"name":"Variecoxanthone B formation","type":"related"},{"name":"Variecoxanthone B synthesis","type":"related"},{"name":"emericellin anabolism","type":"exact"},{"name":"emericellin biosynthesis","type":"exact"},{"name":"emericellin formation","type":"exact"},{"name":"emericellin synthesis","type":"exact"}],"termid":"GO:1900766"}


id: PBO:0051722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insulin receptor","termid":"PBO:0051722"}


id: GO:0033469
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving gibberellin 12, (1R,2S,3S,4R,8S,9S,12R)-4,8-dimethyl-13-methylidenetetracyclo[10.2.1.01,9.03,8]pentadecane-2,4-dicarboxylic acid 1meta,4a-dimethyl-8-methylidene-4aalpha,4bbeta-gibbane-1alpha,10beta-dicarboxylic acid.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gibberellin metabolic process","termid":"GO:0009685"},{"relation_name":"is_a","term_name":"dicarboxylic acid metabolic process","termid":"GO:0043648"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"gibberellin 12 metabolic process","synonyms":[{"name":"GA12 metabolic process","type":"exact"},{"name":"gibberellin 12 metabolism","type":"exact"},{"name":"gibberellin A12 metabolic process","type":"exact"}],"termid":"GO:0033469"}


id: GO:0010720
data:
  {"annotated_genes":["SJAG_02392","SJAG_02169","SJAG_04853","SJAG_00514","SJAG_03581"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85930,91888,90628],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051519"},{"annotations":[98310],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0075296"},{"annotations":[86784],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903024"}]},"cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate.","definition_xrefs":["GOC:dph","GOC:BHF","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell differentiation","termid":"GO:0045597"},{"relation_name":"is_a","term_name":"regulation of cell development","termid":"GO:0060284"},{"relation_name":"positively_regulates","term_name":"cell development","termid":"GO:0048468"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00514":null,"SJAG_02169":null,"SJAG_02392":null,"SJAG_03581":null,"SJAG_04853":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell development","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010720","terms_by_termid":{"GO:0051519":null,"GO:0075296":null,"GO:1903024":null}}


id: PBO:0027952
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_pyridoxine_level","termid":"PBO:0027952"}


id: GO:0090678
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cell dedifferentiation process that is a part of a reversible switch of a cell from one cell type or form to another, at a frequency above the expected frequency for somatic mutations.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell dedifferentiation","termid":"GO:0043697"},{"relation_name":"part_of","term_name":"reversible differentiation","termid":"GO:0090677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell dedifferentiation involved in phenotypic switching","termid":"GO:0090678"}


id: MOD:01056
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3',5'-dibromo-L-tyrosine","termid":"MOD:01023"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(79)Br labeled 3',5'-dibromotyrosine","termid":"MOD:01056"}


id: PBO:0066914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 216","termid":"PBO:0066914"}


id: PBO:0079754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"upper zone of growth plate and cartilage matrix associated","termid":"PBO:0079754"}


id: PBO:0027317
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_cycle_arrest_in_mitotic_metaphase_with_long_polar_microtubules","termid":"PBO:0027317"}


id: GO:1902758
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of bis(molybdopterin guanine dinucleotide)molybdenum.","definition_xrefs":["GO_REF:0000068","PMID:23201473","GOC:dph","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Mo-molybdopterin cofactor biosynthetic process","termid":"GO:0006777"},{"relation_name":"is_a","term_name":"nucleotide biosynthetic process","termid":"GO:0009165"},{"relation_name":"is_a","term_name":"bis(molybdopterin guanine dinucleotide)molybdenum metabolic process","termid":"GO:1902757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"bis(molybdopterin guanine dinucleotide)molybdenum biosynthetic process","secondary_identifiers":["MetaCyc:PWY-5964","GO:0061600"],"synonyms":[{"name":"bis(molybdopterin guanine dinucleotide)molybdenum anabolism","type":"exact"},{"name":"bis(molybdopterin guanine dinucleotide)molybdenum biosynthesis","type":"exact"},{"name":"bis(molybdopterin guanine dinucleotide)molybdenum formation","type":"exact"},{"name":"bis(molybdopterin guanine dinucleotide)molybdenum synthesis","type":"exact"},{"name":"bis-Mo-molybdopterin-guanine dinucleotide cofactor biosynthetic process","type":"exact"}],"termid":"GO:1902758"}


id: PBO:0069671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 948, pseudogene","termid":"PBO:0069671"}


id: FYPO:0002026
data:
  {"alleles_by_uniquename":{"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115354],"is_not":false,"summary":null,"term":"FYPO:0002026"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell forms an actomyosin contractile ring that is perpendicular to the long axis of the cell, but is not located at the midpoint of the long axis.","definition_xrefs":["PMID:8834798","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized actomyosin contractile ring","termid":"FYPO:0001369"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02392":null},"genotype_count":1,"genotypes_by_uniquename":{"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0000631","FYPO:0000002","FYPO:0000032","FYPO:0004803","FYPO:0001985"],"is_obsolete":false,"name":"actomyosin contractile ring displaced from midpoint","references_by_uniquename":{"PMID:25866389":null},"single_locus_annotated_genes":["SJAG_02392"],"single_locus_genotype_uniquenames":["pom1delta"],"synonyms":[{"name":"actomyosin contractile ring displaced from cell center","type":"exact"},{"name":"actomyosin contractile ring displaced from cell centre","type":"exact"},{"name":"actomyosin contractile ring displaced from cell midpoint","type":"exact"},{"name":"actomyosin contractile ring displaced from midpoint during mitotic cell cycle","type":"related"},{"name":"actomyosin contractile ring displaced from midpoint during vegetative growth","type":"exact"},{"name":"cytokinetic contractile ring displaced from midpoint","type":"exact"}],"termid":"FYPO:0002026","terms_by_termid":{"FYECO:0000162":null,"FYPO:0002026":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: PBO:0113401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative SPOUT methyltransferase; predicted to be involved in ribosome biogenesis; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; not an essential gene; YMR310C has a paralog, YGR283C, that arose from the whole genome duplication","termid":"PBO:0113401"}


id: FYPO:0009056
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which kinetochore microtubule depolymerization, i.e. the removal of tubulin dimers from a kinetochore microtubule, occurs to a lesser extent than normal during anaphase A. Kinetochore microtubule depolymerisation drives chromosome movement during Anaphase A in S. pombe.","definition_xrefs":["PMID:36435910"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased mitotic spindle microtubule depolymerization during mitotic anaphase A","termid":"FYPO:0005423"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000054","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased kinetochore microtubule depolymerization during mitotic anaphase A","termid":"FYPO:0009056"}


id: PBO:0050825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HYDIN pseudogene 1","termid":"PBO:0050825"}


id: FYECO:0000325
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which ethylene glycol was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ ethylene glycol","termid":"FYECO:0000325"}


id: GO:0061816
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The selective degradation of proteasomes by macroautophagy.","definition_xrefs":["GOC:se","PMID:27477278","GOC:dph","PMID:26670610"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macroautophagy","termid":"GO:0016236"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006914"}],"interesting_parent_ids":["GO:0044248","GO:0006914","GO:0008150"],"is_obsolete":false,"name":"proteaphagy","termid":"GO:0061816"}


id: PBO:0044990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DExH-box helicase 57","termid":"PBO:0044990"}


id: PBO:0033761
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-meiosis_I_metaphase/anaphase_transition_delay","termid":"PBO:0033761"}


id: PBO:0090733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"telomerase regulatory factor Ctr1","termid":"PBO:0090733"}


id: PR:Q9P5N3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- alr2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P5N3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alanine racemase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC359.02","synonyms":[{"name":"Spom972h-alr2","type":"exact"}],"termid":"PR:Q9P5N3"}


id: GO:0001805
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of type III hypersensitivity, a type of inflammatory response.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of type III hypersensitivity","termid":"GO:0001803"},{"relation_name":"is_a","term_name":"positive regulation of hypersensitivity","termid":"GO:0002885"},{"relation_name":"is_a","term_name":"positive regulation of myeloid leukocyte mediated immunity","termid":"GO:0002888"},{"relation_name":"is_a","term_name":"positive regulation of immunoglobulin mediated immune response","termid":"GO:0002891"},{"relation_name":"positively_regulates","term_name":"type III hypersensitivity","termid":"GO:0001802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of type III hypersensitivity","synonyms":[{"name":"activation of type III hypersensitivity","type":"narrow"},{"name":"stimulation of type III hypersensitivity","type":"narrow"},{"name":"up regulation of type III hypersensitivity","type":"exact"},{"name":"up-regulation of type III hypersensitivity","type":"exact"},{"name":"upregulation of type III hypersensitivity","type":"exact"}],"termid":"GO:0001805"}


id: PBO:0048526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gem nuclear organelle associated protein 2 pseudogene 1","termid":"PBO:0048526"}


id: PBO:0002484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U1 snRNP-associated protein Usp108","termid":"PBO:0002484"}


id: FYPO:0005956
data:
  {"alleles_by_uniquename":{"SJAG_03940:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03940","name":"nem2delta","uniquename":"SJAG_03940:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115137],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0005957"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dephosphorylation of one or more specific proteins is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal metabolic process during vegetative growth","termid":"FYPO:0001363"},{"relation_name":"is_a","term_name":"abnormal protein dephosphorylation","termid":"FYPO:0004426"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02763":null,"SJAG_03940":null},"genotype_count":1,"genotypes_by_uniquename":{"nem2delta":{"display_name":"nem2delta","display_uniquename":"nem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03940:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0002494","FYPO:0002274","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal protein dephosphorylation during vegetative growth","references_by_uniquename":{"PMID:26774782":null},"single_locus_annotated_genes":["SJAG_03940"],"single_locus_genotype_uniquenames":["nem2delta"],"synonyms":[{"name":"abnormal protein dephosphorylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005956","terms_by_termid":{"FYPO:0005957":null,"FYPO_EXT:0000001":null}}


id: GO:0140439
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a stearoyl (systematic name, octadecanoyl) group to a sulfur atom on the cysteine of a protein molecule, in the reaction: octadecanoyl-CoA + L-cysteinyl-[protein] = CoA + S-octadecanoyl-L-cysteinyl-[protein].","definition_xrefs":["PMID:22968831","PMID:22247542","RHEA:59740","PMID:12681491"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-cysteine S-acyltransferase activity","termid":"GO:0019707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0140096","GO:0016746","GO:0003824"],"is_obsolete":false,"name":"protein-cysteine S-stearoyltransferase activity","termid":"GO:0140439"}


id: PBO:0003365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 snRNP-associated protein sap61","termid":"PBO:0003365"}


id: GO:0038117
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with the C-C motif chemokine 19 (CCL19) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["PMID:15059845","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C-C chemokine receptor activity","termid":"GO:0016493"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"C-C motif chemokine 19 receptor activity","synonyms":[{"name":"CCL19 receptor activity","type":"related"}],"termid":"GO:0038117"}


id: PBO:0033764
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_eukaryotic_translation_initiation_factor_2B_complex_assembly","termid":"PBO:0033764"}


id: GO:0102955
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-demethylmenaquinol-7 + S-adenosyl-L-methionine = menaquinol-7 + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["GOC:pz","PMID:1444716","PMID:9045837"],"gene_count":0,"genotype_count":0,"name":"obsolete S-adenosylmethionine:2-demethylmenaquinol-7 methyltransferase activity (obsolete GO:0102955)","termid":"GO:0102955"}


id: PBO:0079425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta class I pseudogene 8","termid":"PBO:0079425"}


id: MOD:01373
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-leucine residue to a (2S,4R)-5-hydroxyleucine.","definition_xrefs":["RESID:AA0443","PubMed:16858410","PubMed:9164839","ChEBI:141824","PubMed:7690768"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monohydroxylated leucine","termid":"MOD:01411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(2S,4R)-5-hydroxyleucine","synonyms":[{"name":"(2S,4R)-2-amino-5-hydroxy-4-methylpentanoic acid","type":"exact"},{"name":"(2S,4R)-5-hydroxyleucine","type":"exact"},{"name":"(4R)-5-hydroxyleucine","type":"exact"},{"name":"MOD_RES (4R)-5-hydroxyleucine","type":"exact"},{"name":"delta-hydroxyleucine","type":"exact"}],"termid":"MOD:01373"}


id: PBO:0029772
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_spore_shape","termid":"PBO:0029772"}


id: PBO:0001860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar carboxypeptidase (predicted)","termid":"PBO:0001860"}


id: FYPO:0004993
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which spore germination occurs at a normal (i.e. indistinguishable from wild type) frequency.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population phenotype","termid":"FYPO:0000003"},{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000003"],"is_obsolete":false,"name":"normal spore germination frequency","synonyms":[{"name":"normal spore viability","type":"related"}],"termid":"FYPO:0004993"}


id: SO:0000918
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An edit to delete a uridine.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000918 delete_U (obsolete SO:0000918)","synonyms":[{"name":"delete U","type":"exact"}],"termid":"SO:0000918"}


id: _global:partial_evidence_for_feature
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"B is partial_evidence_for_feature A if the extent of B supports part_of but not all of A.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"evidence_for_feature","termid":"_global:evidence_for_feature"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial_evidence_for_feature","termid":"_global:partial_evidence_for_feature"}


id: PBO:0050382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A3 pseudogene 6","termid":"PBO:0050382"}


id: GO:0060245
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which information about the density of cells in a population is received and converted into a molecular signal.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of biotic stimulus","termid":"GO:0009595"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of cell density","termid":"GO:0060245"}


id: PBO:0055320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2748","termid":"PBO:0055320"}


id: PATO:0001297
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A radiation reflective quality inhering in a bearer by virtue of the ratio of the energy of a wave reflected from its surface to the energy possessed by the wave striking the bearer's surface.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"radiation reflective quality","termid":"PATO:0001294"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reflectivity","termid":"PATO:0001297"}


id: GO:0070057
data:
  {"annotated_genes":["SJAG_03536","SJAG_04080","SJAG_00405"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[98932,101283,114524],"is_not":false,"summary":null,"term":"GO:0070057"}]},"cv_name":"cellular_component","definition":"The region of the prospore membrane to which the spindle pole body (SPB) is anchored; the prospore membrane extends from the SPB attachment site to surround the spore nucleus.","definition_xrefs":["GOC:mah","PMID:14702385"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"prospore membrane","termid":"GO:0005628"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00405":null,"SJAG_03536":null,"SJAG_04080":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005628"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005628","GO:0005575"],"is_obsolete":false,"name":"prospore membrane spindle pole body attachment site","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"forespore membrane SPB attachment site","type":"exact"},{"name":"forespore membrane spindle pole body attachment site","type":"exact"},{"name":"prospore membrane SPB attachment site","type":"exact"}],"termid":"GO:0070057","terms_by_termid":{"GO:0070057":null}}


id: PBO:0085798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; contains a J-domain, which is a region with homology to the E. coli DnaJ protein","termid":"PBO:0085798"}


id: GO:0000248
data:
  {"annotated_genes":["SJAG_00717","SJAG_03509"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[85726,103532],"is_not":false,"summary":null,"term":"GO:0000248"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 5,7,24(28)-ergostatrienol + O2 + NADPH = 5,7,22,24(28)-ergostatetraenol + 2 H2O + NADP+.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"},{"relation_name":"is_a","term_name":"sterol desaturase activity","termid":"GO:0070704"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00717":null,"SJAG_03509":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"C-5 sterol desaturase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-6807053","Reactome:R-HSA-195664"],"synonyms":[{"name":"sterol-C5-desaturase activity","type":"exact"}],"termid":"GO:0000248","terms_by_termid":{"GO:0000248":null}}


id: PBO:0109939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase, splicosomal Prp16","termid":"PBO:0109939"}


id: PBO:0069792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1078, pseudogene","termid":"PBO:0069792"}


id: PBO:0066869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 169","termid":"PBO:0066869"}


id: PBO:0056975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 28","termid":"PBO:0056975"}


id: GO:1990585
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: trans-4-hydroxy-L-prolyl-[protein] + UDP-beta-L-arabinofuranose = H+ + O-(beta-L-arabinofuranosyl)-trans-4-hydroxy-L-prolyl-[protein] + UDP.","definition_xrefs":["RHEA:49472","PMID:24036508"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016757","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"hydroxyproline O-arabinosyltransferase activity","secondary_identifiers":["EC:2.4.2.58","MetaCyc:RXN-15011"],"synonyms":[{"name":"HPAT","type":"exact"}],"termid":"GO:1990585"}


id: GO:1903982
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that decreases the length of a microvillus.","definition_xrefs":["GOC:als","PMID:22114352"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell projection organization","termid":"GO:0031345"},{"relation_name":"is_a","term_name":"regulation of microvillus length","termid":"GO:0032532"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of microvillus length","synonyms":[{"name":"down regulation of regulation of microvillus length","type":"exact"},{"name":"down-regulation of regulation of microvillus length","type":"exact"},{"name":"downregulation of regulation of microvillus length","type":"exact"},{"name":"inhibition of regulation of microvillus length","type":"narrow"}],"termid":"GO:1903982"}


id: GO:0030701
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD+ + [dinitrogen reductase] = nicotinamide + ADP-D-ribosyl-[dinitrogen reductase].","definition_xrefs":["EC:2.4.2.37"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016757","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"NAD+-dinitrogen-reductase ADP-D-ribosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.2.37-RXN","RHEA:18077"],"synonyms":[{"name":"ADP-ribosyltransferase activity","type":"broad"},{"name":"NAD+:[dinitrogen reductase] (ADP-D-ribosyl)transferase activity","type":"related"},{"name":"NAD--azoferredoxin (ADP-ribose)transferase activity","type":"related"},{"name":"NAD-azoferredoxin (ADPribose)transferase activity","type":"related"},{"name":"NAD-dinitrogen-reductase ADP-D-ribosyltransferase activity","type":"exact"}],"termid":"GO:0030701"}


id: FYPO:0004067
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of the serine residue at position 2 within one or more copies of the heptapeptide repeat (YSPTSPS) of the C-terminal domain of RNA polymerase II occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah","GO:0071619"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein phosphorylation during vegetative growth","termid":"FYPO:0001838"},{"relation_name":"is_a","term_name":"abnormal RNA polymerase II C-terminal domain phosphorylation","termid":"FYPO:0007410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002494","FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0002274"],"is_obsolete":false,"name":"decreased phosphorylation of RNA polymerase II C-terminal domain serine 2 residues during vegetative growth","synonyms":[{"name":"decreased phosphorylation of RNA polymerase II C-terminal domain serine 2 residues during mitotic cell cycle","type":"related"},{"name":"decreased phosphorylation of RNA polymerase II CTD serine 2 residues during vegetative growth","type":"exact"},{"name":"reduced phosphorylation of RNA polymerase II C-terminal domain serine 2 residues during vegetative growth","type":"exact"}],"termid":"FYPO:0004067"}


id: PBO:0041296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C2 domain containing 3 centriole elongation regulator","termid":"PBO:0041296"}


id: GO:0060531
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquires specialized structural and functions of a neuroendocrine cell of the prostate gland acinus.","definition_xrefs":["PMID:18977204","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation involved in prostate gland development","termid":"GO:0060742"},{"relation_name":"is_a","term_name":"neuroendocrine cell differentiation","termid":"GO:0061101"},{"relation_name":"part_of","term_name":"prostate glandular acinus development","termid":"GO:0060525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuroendocrine cell differentiation involved in prostate gland acinus development","termid":"GO:0060531"}


id: PBO:0041528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 16 open reading frame 90","termid":"PBO:0041528"}


id: PBO:0044182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"catenin delta 2","termid":"PBO:0044182"}


id: GO:1901339
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of store-operated calcium channel activity.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of calcium ion transmembrane transporter activity","termid":"GO:1901019"},{"relation_name":"is_a","term_name":"regulation of cation channel activity","termid":"GO:2001257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"regulation of store-operated calcium channel activity","termid":"GO:1901339"}


id: PBO:0062521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily Q member 1 pseudogene","termid":"PBO:0062521"}


id: PBO:0059447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Myb/SANT DNA binding domain containing 1","termid":"PBO:0059447"}


id: PBO:0051320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1/OR15-118 (pseudogene)","termid":"PBO:0051320"}


id: GO:0033840
data:
  {"annotated_genes":["SJAG_04236"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[113790],"is_not":false,"summary":null,"term":"GO:0033840"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: [(1->4)-alpha-D-glucosyl](n) + an NDP-alpha-D-glucose = [(1->4)-alpha-D-glucosyl](n+1) + a ribonucleoside 5'-diphosphate + H+, where NDP is ADP or UDP.","definition_xrefs":["EC:2.4.1.242","PMID:17472966","RHEA:15873"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosyltransferase activity","termid":"GO:0046527"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04236":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016757"],"is_obsolete":false,"name":"alpha-1,4-glucan glucosyltransferase (NDP-glucose donor) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:2.4.1.242-RXN","MetaCyc:RXN-14378"],"synonyms":[{"name":"GBSS","type":"related"},{"name":"GBSSI","type":"related"},{"name":"GBSSII","type":"related"},{"name":"NDP-glucose:1,4-alpha-D-glucan 4-alpha-D-glucosyltransferase activity","type":"related"},{"name":"NDPglucose-starch glucosyltransferase activity","type":"related"},{"name":"granule-bound starch synthase I activity","type":"related"},{"name":"granule-bound starch synthase II activity","type":"related"},{"name":"granule-bound starch synthase activity","type":"related"},{"name":"starch granule-bound nucleoside diphosphate glucose-starch glucosyltransferase activity","type":"related"},{"name":"starch synthase II activity","type":"related"},{"name":"waxy protein","type":"related"}],"termid":"GO:0033840","terms_by_termid":{"GO:0033840":null}}


id: PBO:0081044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger C3HC-type containing 1","termid":"PBO:0081044"}


id: PBO:0091659
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ferric Reductase in Pombe","termid":"PBO:0091659"}


id: FYPO:0000737
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which assembly of the meiotic spindle is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"abnormal meiotic spindle","termid":"FYPO:0000734"},{"relation_name":"is_a","term_name":"abnormal spindle assembly","termid":"FYPO:0000119"},{"relation_name":"is_a","term_name":"abnormal meiotic chromosome segregation","termid":"FYPO:0000151"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0000054","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal meiotic spindle assembly","synonyms":[{"name":"abnormal spindle assembly involved in meiosis","type":"exact"}],"termid":"FYPO:0000737"}


id: PBO:0051912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrin subunit beta 1","termid":"PBO:0051912"}


id: PBO:0087482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of chromosomal passenger complex (CPC); CPC is comprised of Ipl1p-Sli15p-Bir1p-Nbl1p and regulates chromosome segregation; required for chromosome bi-orientation and for spindle assembly checkpoint activation upon reduced sister kinetochore tension; relative distribution to shortened microtubules increases upon DNA replication stress; sumoylated in an Mms21p-dependent manner; human survivin homolog","termid":"PBO:0087482"}


id: PBO:0084140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"High-affinity glucose transporter; member of the major facilitator superfamily, expression is induced by low levels of glucose and repressed by high levels of glucose; HXT4 has a paralog, HXT7, that arose from the whole genome duplication","termid":"PBO:0084140"}


id: PBO:0029013
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_chromosome_during_vegetative_growth","termid":"PBO:0029013"}


id: GO:0007179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by an extracellular ligand binding to a transforming growth factor beta receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:BHF","GOC:mah","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transforming growth factor beta receptor superfamily signaling pathway","termid":"GO:0141091"},{"relation_name":"part_of","term_name":"cellular response to transforming growth factor beta stimulus","termid":"GO:0071560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"transforming growth factor beta receptor signaling pathway","synonyms":[{"name":"TGF-beta receptor signaling pathway","type":"exact"},{"name":"TGF-beta receptor signalling pathway","type":"exact"},{"name":"TGFbeta receptor signaling pathway","type":"exact"},{"name":"TGFbeta receptor signalling pathway","type":"exact"},{"name":"transforming growth factor beta receptor signalling pathway","type":"exact"}],"termid":"GO:0007179"}


id: MOD:00968
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:347"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CM-Cys vs PAM-Cys","termid":"MOD:00968"}


id: FYECO:0000103
data:
  {"alleles_by_uniquename":{"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"}},"annotation_feature_type":"gene","cv_annotations":{"fission_yeast_phenotype_condition":[{"annotations":[115434],"is_not":false,"summary":null,"term":"FYECO:0000103"}]},"cv_name":"fission_yeast_phenotype_condition","definition":"Cells were grown in liquid culture.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping growth medium","termid":"FYECO:0000009"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00514":null},"genotype_count":1,"genotypes_by_uniquename":{"scd1delta":{"display_name":"scd1delta","display_uniquename":"scd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00514:allele-1","expression":"Null"}]}]}},"is_obsolete":false,"name":"liquid culture","references_by_uniquename":{"PMID:30664646":null},"single_locus_annotated_genes":["SJAG_00514"],"single_locus_genotype_uniquenames":["scd1delta"],"termid":"FYECO:0000103","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000103":null,"FYECO:0000137":null,"FYPO_EXT:0000001":null}}


id: PBO:0072907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretory carrier membrane protein 5","termid":"PBO:0072907"}


id: PBO:0000967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNase P and RNase MRP subunit p30 (predicted)","termid":"PBO:0000967"}


id: GO:0034392
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of smooth muscle cell apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of muscle cell apoptotic process","termid":"GO:0010656"},{"relation_name":"is_a","term_name":"regulation of smooth muscle cell apoptotic process","termid":"GO:0034391"},{"relation_name":"negatively_regulates","term_name":"smooth muscle cell apoptotic process","termid":"GO:0034390"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of smooth muscle cell apoptotic process","synonyms":[{"name":"down regulation of smooth muscle cell apoptosis","type":"exact"},{"name":"down-regulation of smooth muscle cell apoptosis","type":"exact"},{"name":"downregulation of smooth muscle cell apoptosis","type":"exact"},{"name":"inhibition of smooth muscle cell apoptosis","type":"narrow"},{"name":"negative regulation of SMC apoptosis","type":"exact"},{"name":"negative regulation of smooth muscle cell apoptosis","type":"narrow"}],"termid":"GO:0034392"}


id: PBO:0054666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2072","termid":"PBO:0054666"}


id: PATO:0000764
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A behavioral quality inhering in a bearer by virtue of the bearer's receiving or being subjected to an action without responding or initiating an action in return.","definition_xrefs":["www.answers.com:www.answers.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"behavioral quality","termid":"PATO:0000186"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"passive","termid":"PATO:0000764"}


id: PBO:0110066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPR repeat protein, implicated in rRNA processing from interactions, human TTC27 ortholog","termid":"PBO:0110066"}


id: PR:Q92345
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pdc101 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q92345"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate decarboxylase C1F8.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F8.07c","synonyms":[{"name":"Spom972h-pdc101","type":"exact"}],"termid":"PR:Q92345"}


id: GO:0099112
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The transport of a protein driven by polymerization of a microtubule to which it is attached.","definition_xrefs":["GOC:dos","GOC:vw","PMID:11018050"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein transport","termid":"GO:0006886"},{"relation_name":"is_a","term_name":"microtubule-based protein transport","termid":"GO:0099118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"microtubule polymerization based protein transport","termid":"GO:0099112"}


id: PBO:0029626
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_meiotic_sister_chromatid_cohesion","termid":"PBO:0029626"}


id: GO:0015535
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: fucose(out) + H+(out) = fucose(in) + H+(in).","definition_xrefs":["TC:2.A.1.7.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose:proton symporter activity","termid":"GO:0009679"},{"relation_name":"is_a","term_name":"fucose transmembrane transporter activity","termid":"GO:0015150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"fucose:proton symporter activity","secondary_identifiers":["MetaCyc:TRANS-RXN-20","RHEA:29023"],"synonyms":[{"name":"fucose:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015535"}


id: GO:0006929
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of a cell from one site to another along a substrate such as the extracellular matrix; the migrating cell forms a protrusion that attaches to the substrate.","definition_xrefs":["ISBN:0815316194","PMID:11944043","PMID:14657486"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration","termid":"GO:0016477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"substrate-dependent cell migration","synonyms":[{"name":"substrate-bound cell migration","type":"exact"}],"termid":"GO:0006929"}


id: PBO:0001430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LEM domain","termid":"PBO:0001430"}


id: PR:O60094
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A myb-binding protein 1A that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR13213:SF2","PRO:DNx","OMA:SCHPO03187"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase V (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC14C8.14c","secondary_identifiers":["UniProtKB:O60094"],"synonyms":[{"name":"POL V (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-MYBBP1A","type":"exact"}],"termid":"PR:O60094"}


id: GO:0033836
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-glucose + a flavonol = UDP + a flavonol 7-O-beta-D-glucoside.","definition_xrefs":["EC:2.4.1.237"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosyltransferase activity","termid":"GO:0046527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"flavonol 7-O-beta-glucosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.237-RXN","RHEA:23164"],"synonyms":[{"name":"UDP-glucose:flavonol 7-O-beta-D-glucosyltransferase activity","type":"related"},{"name":"UDP-glucose:flavonol 7-O-glucosyltransferase activity","type":"related"}],"termid":"GO:0033836"}


id: GO:0034184
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the extent to which the association between sister chromatids of a replicated chromosome is maintained during a mitotic cell cycle.","definition_xrefs":["GOC:vw","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of maintenance of sister chromatid cohesion","termid":"GO:0034093"},{"relation_name":"is_a","term_name":"regulation of maintenance of mitotic sister chromatid cohesion","termid":"GO:0034182"},{"relation_name":"positively_regulates","term_name":"maintenance of mitotic sister chromatid cohesion","termid":"GO:0034088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"positive regulation of maintenance of mitotic sister chromatid cohesion","termid":"GO:0034184"}


id: GO:0015135
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of glucuronate from one side of a membrane to the other. Glucuronate is the uronic acid formally derived from glucose by oxidation of the hydroxymethylene group at C-6 to a carboxyl group.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transporter activity","termid":"GO:0046943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"glucuronate transmembrane transporter activity","termid":"GO:0015135"}


id: PBO:0024819
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"promoter contains PCB","termid":"PBO:0024819"}


id: PBO:0054841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2255","termid":"PBO:0054841"}


id: PBO:0058349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4722","termid":"PBO:0058349"}


id: PBO:0047329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fas binding factor 1","termid":"PBO:0047329"}


id: PBO:0053055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucyl-tRNA synthetase 1","termid":"PBO:0053055"}


id: PBO:0040401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting V1 subunit G1 pseudogene 2","termid":"PBO:0040401"}


id: PBO:0072140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 17","termid":"PBO:0072140"}


id: PBO:0047784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead box D4","termid":"PBO:0047784"}


id: PBO:0046737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exonuclease 3'-5' domain containing 3","termid":"PBO:0046737"}


id: PBO:0054974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2388","termid":"PBO:0054974"}


id: GO:0002469
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a myeloid dendritic cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex.","definition_xrefs":["ISBN:0781735149","PMID:15771591","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dendritic cell antigen processing and presentation","termid":"GO:0002468"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myeloid dendritic cell antigen processing and presentation","termid":"GO:0002469"}


id: GO:0048662
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation.","definition_xrefs":["GOC:ebc","CL:0000192"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell population proliferation","termid":"GO:0008285"},{"relation_name":"is_a","term_name":"regulation of smooth muscle cell proliferation","termid":"GO:0048660"},{"relation_name":"negatively_regulates","term_name":"smooth muscle cell proliferation","termid":"GO:0048659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of smooth muscle cell proliferation","synonyms":[{"name":"down regulation of smooth muscle cell proliferation","type":"exact"},{"name":"down-regulation of smooth muscle cell proliferation","type":"exact"},{"name":"downregulation of smooth muscle cell proliferation","type":"exact"},{"name":"inhibition of smooth muscle cell proliferation","type":"narrow"},{"name":"negative regulation of SMC proliferation","type":"exact"}],"termid":"GO:0048662"}


id: PBO:0051732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrator complex subunit 4 pseudogene 1","termid":"PBO:0051732"}


id: PBO:0082379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Beta-1,3-glucanosyltransferase required for cell wall assembly; also has role in transcriptional silencing; localizes to cell surface via glycosylphosphatidylinositol (GPI) anchor, also found at nuclear periphery; genetic interactions with histone H3 lysine acetyltransferases GCN5 and SAS3 indicate functions for Gas1p in DNA damage response and cell cycle regulation; protein demonstrates amyloid properties in vivo","termid":"PBO:0082379"}


id: PBO:0053073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lamin B receptor","termid":"PBO:0053073"}


id: PBO:0061817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OFD1 pseudogene 7 Y-linked","termid":"PBO:0061817"}


id: GO:2001259
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cation channel activity.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of ion transmembrane transporter activity","termid":"GO:0032414"},{"relation_name":"is_a","term_name":"positive regulation of cation transmembrane transport","termid":"GO:1904064"},{"relation_name":"is_a","term_name":"regulation of cation channel activity","termid":"GO:2001257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of cation channel activity","synonyms":[{"name":"positive regulation of cation diffusion facilitator activity","type":"exact"},{"name":"positive regulation of nonselective cation channel activity","type":"exact"}],"termid":"GO:2001259"}


id: GO:0038018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a Wnt receptor. Internalized Wnt receptors can be recycled to the plasma membrane or sorted to lysosomes for protein degradation.","definition_xrefs":["GOC:signaling","PMID:19643732","GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor catabolic process","termid":"GO:0032801"},{"relation_name":"part_of","term_name":"negative regulation of Wnt signaling pathway","termid":"GO:0030178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0008150"],"is_obsolete":false,"name":"Wnt receptor catabolic process","synonyms":[{"name":"Frizzled degradation","type":"narrow"},{"name":"Wnt receptor breakdown","type":"exact"},{"name":"Wnt receptor catabolism","type":"exact"},{"name":"Wnt receptor degradation","type":"related"},{"name":"negative regulation of Wnt receptor signaling pathway by Wnt receptor degradation","type":"exact"}],"termid":"GO:0038018"}


id: SO:0000587
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Group I catalytic introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions.","direct_ancestors":[{"relation_name":"is_a","term_name":"autocatalytically_spliced_intron","termid":"SO:0000588"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"group_I_intron","secondary_identifiers":["http://en.wikipedia.org/wiki/Group_I_intron"],"synonyms":[{"name":"group I intron","type":"exact"}],"termid":"SO:0000587"}


id: PBO:0053631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 677","termid":"PBO:0053631"}


id: GO:0015223
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the directed transport of vitamins or cofactors into, out of or within a cell, or between cells.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete vitamin or cofactor transporter activity (obsolete GO:0015223)","synonyms":[{"name":"vitamin or cofactor transporter activity","type":"exact"},{"name":"vitamin/cofactor transporter activity","type":"exact"}],"termid":"GO:0015223"}


id: PBO:0075138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNRPA1 divergent transcript","termid":"PBO:0075138"}


id: GO:0062212
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of firing from an early origin of replication involved in mitotic DNA replication.","definition_xrefs":["PMID:22279046"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitotic DNA replication initiation","termid":"GO:1903466"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006260"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0006259","GO:0006260","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"regulation of mitotic DNA replication initiation from early origin","synonyms":[{"name":"regulation of early replication origin firing","type":"exact"}],"termid":"GO:0062212"}


id: FYPO:0007348
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 36 of histone H3 is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K36 methylation during vegetative growth","termid":"FYPO:0002918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0002274","FYPO:0002494","FYPO:0000002"],"is_obsolete":false,"name":"decreased histone H3-K36 trimethylation during vegetative growth","synonyms":[{"name":"decreased histone H3 K36 trimethylation during vegetative growth","type":"exact"},{"name":"decreased histone H3-K36 trimethylation during mitotic cell cycle","type":"related"},{"name":"decreased histone H3K36me3 during vegetative growth","type":"exact"},{"name":"decreased histone lysine H3 K36 trimethylation during vegetative growth","type":"exact"},{"name":"reduced histone H3-K36 trimethylation during vegetative growth","type":"exact"}],"termid":"FYPO:0007348"}


id: PBO:0060887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nestin","termid":"PBO:0060887"}


id: PBO:0061553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-nucleotidase, cytosolic IIIB","termid":"PBO:0061553"}


id: GO:0048275
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acetylation of the N-terminal arginine of proteins; catalyzed by an uncharacterized arginyl-peptide alpha-N-acetyltransferase.","definition_xrefs":["GOC:jsg","PMID:12883043","RESID:AA0354"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal protein amino acid acetylation","termid":"GO:0006474"},{"relation_name":"is_a","term_name":"peptidyl-arginine modification","termid":"GO:0018195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0051604","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"N-terminal peptidyl-arginine acetylation","termid":"GO:0048275"}


id: PBO:0062745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily I member 2","termid":"PBO:0062745"}


id: PATO:0001013
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001013 absolute intensity value (obsolete PATO:0001013)","termid":"PATO:0001013"}


id: GO:1903630
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of aminoacyl-tRNA ligase activity.","definition_xrefs":["GO_REF:0000059","PMID:2280766","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ligase activity","termid":"GO:0051340"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of aminoacyl-tRNA ligase activity","synonyms":[{"name":"regulation of aminoacyl-tRNA synthetase activity","type":"exact"},{"name":"regulation of aminoacyl-tRNA synthetase auxiliary protein activity","type":"related"}],"termid":"GO:1903630"}


id: PBO:0017454
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-interacts_with","termid":"PBO:0017454"}


id: PBO:0054707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2116","termid":"PBO:0054707"}


id: GO:0021910
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened that results in the spatial identity of regions along the dorsal-ventral axis of the spinal cord.","definition_xrefs":["GO_REF:0000021","GOC:cls","GOC:jid","PMID:11262869","GOC:dgh","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"smoothened signaling pathway","termid":"GO:0007224"},{"relation_name":"part_of","term_name":"spinal cord dorsal/ventral patterning","termid":"GO:0021513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"smoothened signaling pathway involved in ventral spinal cord patterning","synonyms":[{"name":"hedgehog signaling pathway involved in ventral spinal cord patterning","type":"exact"},{"name":"hh signaling pathway involved in ventral spinal cord patterning","type":"exact"},{"name":"smoothened signalling pathway in ventral spinal cord patterning","type":"exact"}],"termid":"GO:0021910"}


id: GO:0018135
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-cysteine cyclase activity (obsolete GO:0018135)","secondary_identifiers":["EC:4.2.1.-"],"synonyms":[{"name":"peptidyl-cysteine cyclase activity","type":"exact"}],"termid":"GO:0018135"}


id: FYPO:0006861
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which an RNA is observed in a particular location where it is not normally found.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular physical quality phenotype during vegetative growth","termid":"FYPO:0001321"},{"relation_name":"output_of","term_name":"abnormal RNA localization during vegetative growth","termid":"FYPO:0000360"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"mislocalized RNA during vegetative growth","synonyms":[{"name":"mislocalised RNA during vegetative growth","type":"exact"},{"name":"mislocalized RNA during mitotic cell cycle","type":"related"}],"termid":"FYPO:0006861"}


id: GO:0007638
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Behavior that is dependent upon the sensation of a mechanical stimulus.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"behavior","termid":"GO:0007610"},{"relation_name":"part_of","term_name":"response to mechanical stimulus","termid":"GO:0009612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mechanosensory behavior","synonyms":[{"name":"behavioral response to mechanical stimulus","type":"exact"},{"name":"behavioural response to mechanical stimulus","type":"exact"},{"name":"mechanosensory behaviour","type":"exact"}],"termid":"GO:0007638"}


id: FYPO:0005500
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription from a promoter that contains one or more CRE elements does not occur during a cellular response to miconazole.","definition_xrefs":["PMID:26108447","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished transcription from CRE promoter","termid":"FYPO:0005497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0006551","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000294"],"is_obsolete":false,"name":"abolished transcription from CRE promoter during cellular response to miconazole","synonyms":[{"name":"abolished transcription from CRE promoter during cellular response to miconazole during mitotic cell cycle","type":"related"},{"name":"abolished transcription from CRE promoter during cellular response to miconazole during vegetative growth","type":"exact"},{"name":"expression of CRE target genes abolished during cellular response to miconazole","type":"related"},{"name":"transcription from CRE promoter abolished during cellular response to miconazole","type":"exact"}],"termid":"FYPO:0005500"}


id: PBO:0073743
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 2 member 2","termid":"PBO:0073743"}


id: PBO:0084489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meiosis-specific protein; component of the Synaptonemal Complex (SC) along with Gmc2p; required for efficient crossover formation and for the efficient loading of the SC transverse filament protein, Zip1p; is SUMOlytaed in a Gmc2p manner, and SUMOylation is required for its function in meiosis; GFP fusion protein is present in discrete clusters in the nucleus throughout mitosis; may be involved in maintaining chromatin structure","termid":"PBO:0084489"}


id: GO:0006086
data:
  {"annotated_genes":["SJAG_03290","SJAG_02158","SJAG_03064","SJAG_02006","SJAG_01402","SJAG_00866"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83505,91050,95054,104590,110243,114451],"is_not":false,"summary":null,"term":"GO:0006086"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate.","definition_xrefs":["GOC:dph","GOC:go_curators","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetyl-CoA biosynthetic process","termid":"GO:0006085"},{"relation_name":"is_a","term_name":"pyruvate metabolic process","termid":"GO:0006090"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00866":null,"SJAG_01402":null,"SJAG_02006":null,"SJAG_02158":null,"SJAG_03064":null,"SJAG_03290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0006790","GO:0044281"],"is_obsolete":false,"name":"acetyl-CoA biosynthetic process from pyruvate","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PYRUVDEHYD-PWY"],"synonyms":[{"name":"acetyl-CoA anabolism from pyruvate","type":"exact"},{"name":"acetyl-CoA formation from pyruvate","type":"exact"},{"name":"acetyl-CoA synthesis from pyruvate","type":"exact"},{"name":"pyruvate dehydrogenase pathway","type":"exact"}],"termid":"GO:0006086","terms_by_termid":{"GO:0006086":null}}


id: PBO:0013087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase Prp43","termid":"PBO:0013087"}


id: GO:0140868
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3 H+ + 15-cis-4,4'-diapophytoene + 3 FAD = 4,4'-diapolycopene + 3 FADH2. This reaction consists of three successive dehydrogenations that lead to the introduction of three double bonds into 4,4'-diapophytoene (dehydrosqualene), with 4,4'-diapophytofluene and 4,4'-diapo-zeta-carotene as intermediates, and 4,4'-diaponeurosporene (the major deep-yellow pigment in staphylococci strains) as the end product.","definition_xrefs":["PMID:15933032"],"gene_count":0,"genotype_count":0,"name":"obsolete 4,4'-diapophytoene desaturase (4,4'-diapolycopene-forming) (obsolete GO:0140868)","synonyms":[{"name":"4,4'-diapophytoene desaturase activity","type":"broad"}],"termid":"GO:0140868"}


id: PBO:0084431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAL-activator protein; encoded within the complex locus MAL2; required for maltose and isomaltose utilization","termid":"PBO:0084431"}


id: PBO:0055549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2985","termid":"PBO:0055549"}


id: PBO:0050975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon related developmental regulator 1","termid":"PBO:0050975"}


id: PBO:0038315
data:
  {"annotation_feature_type":"gene","cv_name":"pubprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"previous_curator_name","termid":"PBO:0038315"}


id: GO:0031298
data:
  {"annotated_genes":["SJAG_03097","SJAG_02724","SJAG_04671"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[95379,102622,104509],"is_not":false,"summary":null,"term":"GO:0031298"}]},"cv_name":"cellular_component","definition":"A protein complex conserved in eukaryotes and associated with the replication fork; the complex stabilizes stalled replication forks and is thought to be involved in coordinating leading- and lagging-strand synthesis and in replication checkpoint signaling.","definition_xrefs":["PMID:15367656"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"part_of","term_name":"nuclear replication fork","termid":"GO:0043596"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02724":null,"SJAG_03097":null,"SJAG_04671":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005694","GO:0032991","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"replication fork protection complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Swi1-Swi3 complex","type":"narrow"},{"name":"TIMELESS-TIPIN complex","type":"narrow"},{"name":"replisome progression complex","type":"exact"}],"termid":"GO:0031298","terms_by_termid":{"GO:0031298":null}}


id: GO:0043721
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-hydroxybutanoyl-CoA = vinylacetyl-CoA + H2O.","definition_xrefs":["EC:4.2.1.120"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"4-hydroxybutanoyl-CoA dehydratase activity","secondary_identifiers":["RHEA:26530","KEGG_REACTION:R05337","MetaCyc:RXN-8890"],"synonyms":[{"name":"4-hydroxybutanoyl-CoA hydro-lyase","type":"exact"},{"name":"4-hydroxybutyryl-CoA dehydratase activity","type":"exact"},{"name":"gamma-hydroxybutanoyl-CoA dehydratase activity","type":"exact"},{"name":"gamma-hydroxybutyryl-CoA dehydratase activity","type":"exact"}],"termid":"GO:0043721"}


id: PBO:0066924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 226","termid":"PBO:0066924"}


id: FYPO:0002639
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the distance between sister kinetochores is greater than normal before the onset of mitotic anaphase.","definition_xrefs":["PMID:22065639","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"output_of","term_name":"abnormal centromere localization","termid":"FYPO:0001778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"increased interkinetochore distance before mitotic anaphase","synonyms":[{"name":"increased distance between mitotic kinetochores","type":"related"},{"name":"increased interkinetochore distance before anaphase during mitotic cell cycle","type":"related"},{"name":"increased interkinetochore distance before anaphase onset","type":"exact"},{"name":"increased interkinetochore distance before mitotic anaphase during vegetative growth","type":"exact"},{"name":"increased kinetochore stretching before mitotic anaphase","type":"related"},{"name":"increased sister kinetochore distance before mitotic anaphase","type":"exact"}],"termid":"FYPO:0002639"}


id: PBO:0000593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbohydrate kinase (predicted)","termid":"PBO:0000593"}


id: GO:0003024
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events by which a decrease in diameter of an artery is detected and converted to a molecular signal.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"baroreceptor detection of arterial stretch","termid":"GO:0001981"},{"relation_name":"part_of","term_name":"baroreceptor response to decreased systemic arterial blood pressure","termid":"GO:0001982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"baroreceptor detection of decreased arterial stretch","termid":"GO:0003024"}


id: GO:0019625
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of atrazine, a triazine ring-containing herbicide, into cyanuric acid.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atrazine catabolic process","termid":"GO:0019381"},{"relation_name":"is_a","term_name":"cyanuric acid metabolic process","termid":"GO:0042199"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0008150"],"is_obsolete":false,"name":"atrazine catabolic process to cyanuric acid","secondary_identifiers":["MetaCyc:P141-PWY"],"synonyms":[{"name":"atrazine breakdown to cyanuric acid","type":"exact"},{"name":"atrazine degradation to cyanuric acid","type":"exact"}],"termid":"GO:0019625"}


id: PBO:0083886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ferro-O2-oxidoreductase; multicopper oxidase that oxidizes ferrous (Fe2+) to ferric iron (Fe3+) for subsequent cellular uptake by transmembrane permease Ftr1p; required for high-affinity iron uptake and involved in mediating resistance to copper ion toxicity, belongs to class of integral membrane multicopper oxidases; protein abundance increases in response to DNA replication stress","termid":"PBO:0083886"}


id: PBO:0041064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRF2 RNA polymerase III transcription initiation factor subunit","termid":"PBO:0041064"}


id: GO:0043870
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N(2)-acetyl-L-aminoadipate-semialdehyde + NADP+ + phosphate = N(2)-acetyl-L-gamma-aminoadipyl phosphate + NADPH.","definition_xrefs":["RHEA:41948"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"N-acetyl-gamma-aminoadipyl-phosphate reductase activity","secondary_identifiers":["MetaCyc:RXN-5183"],"synonyms":[{"name":"AGPR","type":"related"},{"name":"ArgC","type":"related"},{"name":"LysY","type":"related"},{"name":"N-acetyl-alpha-glutamyl-phosphate reductase activity","type":"exact"},{"name":"N-acetyl-aminoadipate semialdehyde dehydrogenase activity","type":"exact"},{"name":"NAGSA dehydrogenase activity","type":"broad"}],"termid":"GO:0043870"}


id: FYPO:0005739
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitotic sister chromatid segregation results in the division of chromosomes into two distinct unequal masses containing unseparated sister chromatids, located at or near the ends of an elongated mitotic spindle.","definition_xrefs":["PomBase:vw","PMID:11792803","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complete but unequal mitotic sister chromatid segregation","termid":"FYPO:0001270"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000337","FYPO:0000641","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000631"],"is_obsolete":false,"name":"complete but unequal mitotic sister chromatid segregation with unseparated chromosomes","termid":"FYPO:0005739"}


id: GO:0038095
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the binding of the Fc portion of immunoglobulin E (IgE) to an Fc-epsilon receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region.","definition_xrefs":["GOC:phg","PMID:15048725","PMID:12413516"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Fc receptor signaling pathway","termid":"GO:0038093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"Fc-epsilon receptor signaling pathway","synonyms":[{"name":"Fc-epsilon receptor signalling pathway","type":"exact"}],"termid":"GO:0038095"}


id: GO:0035261
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the external genitalia are generated and organized. The external genitalia are the outer sex organs, such as the penis or vulva in mammals.","definition_xrefs":["PMID:24793987","PMID:25247640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"genitalia morphogenesis","termid":"GO:0035112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"external genitalia morphogenesis","termid":"GO:0035261"}


id: GO:0045696
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of embryo sac egg cell differentiation.","definition_xrefs":["GOC:go_curators","GOC:mtg_plant"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell differentiation","termid":"GO:0045597"},{"relation_name":"is_a","term_name":"regulation of embryo sac egg cell differentiation","termid":"GO:0045694"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"embryo sac egg cell differentiation","termid":"GO:0009560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of embryo sac egg cell differentiation","synonyms":[{"name":"activation of female gametophyte egg cell differentiation","type":"narrow"},{"name":"positive regulation of female gametophyte egg cell differentiation","type":"exact"},{"name":"stimulation of female gametophyte egg cell differentiation","type":"narrow"},{"name":"up regulation of female gametophyte egg cell differentiation","type":"exact"},{"name":"up-regulation of female gametophyte egg cell differentiation","type":"exact"},{"name":"upregulation of female gametophyte egg cell differentiation","type":"exact"}],"termid":"GO:0045696"}


id: PR:O60074
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- did2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60074"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein-sorting-associated protein 46 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC13G1.12","synonyms":[{"name":"Spom972h-did2","type":"exact"},{"name":"charged multivesicular body protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"doa4-independent degradation protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60074"}


id: PATO:0001617
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A morphological quality inhering in a bearer by virtue of the bearer's being distorted in form.","definition_xrefs":["thefreedictionary.com:thefreedictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphology","termid":"PATO:0000051"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deformed","synonyms":[{"name":"disfigured","type":"related"},{"name":"distorted","type":"related"}],"termid":"PATO:0001617"}


id: SO:1000046
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosomal inversion that includes the centromere.","definition_xrefs":["FB:reference_manual"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"pericentric","termid":"SO:0001518"},{"relation_name":"is_a","term_name":"chromosomal_inversion","termid":"SO:1000030"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pericentric_inversion","synonyms":[{"name":"pericentric inversion","type":"exact"}],"termid":"SO:1000046"}


id: PBO:0000163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pantoate-beta-alanine ligase","termid":"PBO:0000163"}


id: PBO:0071415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 21","termid":"PBO:0071415"}


id: PR:O94429
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An elongation factor G 2, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02366"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome-releasing factor 2, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC660.10","secondary_identifiers":["UniProtKB:O94429"],"synonyms":[{"name":"EF-G2mt (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RRF2mt (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-GFM2","type":"exact"},{"name":"elongation factor G 2, mitochondrial (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"mEF-G 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94429"}


id: PBO:0027566
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-long_mitotic_spindle_microtubules_protruding_beyond_spindle_pole_body","termid":"PBO:0027566"}


id: GO:0014804
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region between the inner and outer lipid bilayers of the terminal cisterna envelope. This space is enriched in calsequestrin.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sarcoplasmic reticulum lumen","termid":"GO:0033018"},{"relation_name":"part_of","term_name":"terminal cisterna","termid":"GO:0014802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0005783"],"is_obsolete":false,"name":"terminal cisterna lumen","termid":"GO:0014804"}


id: GO:0050736
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a malonyl group to an oxygen atom on the acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"},{"relation_name":"is_a","term_name":"malonyltransferase activity","termid":"GO:0016420"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"O-malonyltransferase activity","termid":"GO:0050736"}


id: PBO:0051975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IZUMO family member 2","termid":"PBO:0051975"}


id: GO:0090452
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of lithium ions (Li+) across a membrane.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lithium ion transport","termid":"GO:0010351"},{"relation_name":"is_a","term_name":"monoatomic cation transmembrane transport","termid":"GO:0098655"},{"relation_name":"is_a","term_name":"inorganic cation transmembrane transport","termid":"GO:0098662"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"lithium ion transmembrane transport","synonyms":[{"name":"lithium ion import","type":"narrow"},{"name":"lithium ion uptake","type":"exact"}],"termid":"GO:0090452"}


id: FYPO:0001156
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which cells cause the pH of their growth medium to decrease by a greater amount than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered effect on growth medium","termid":"FYPO:0001155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001155"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001155"],"is_obsolete":false,"name":"decreased pH of growth medium","synonyms":[{"name":"decreased pH level of growth medium","type":"exact"},{"name":"increased growth medium acidification","type":"exact"},{"name":"reduced pH of growth medium","type":"exact"}],"termid":"FYPO:0001156"}


id: PR:C6Y4B6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC12G12.17 gene.","definition_xrefs":["UniProtKB:C6Y4B6","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-classical export protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC12G12.17","synonyms":[{"name":"Spom972h-SPAC12G12.17","type":"exact"}],"termid":"PR:C6Y4B6"}


id: GO:0015095
data:
  {"annotated_genes":["SJAG_03516","SJAG_00211","SJAG_02484","SJAG_01639","SJAG_02578"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[56722,86281,103315,103589,110636],"is_not":false,"summary":null,"term":"GO:0015095"}]},"cv_name":"molecular_function","definition":"Enables the transfer of magnesium (Mg) ions from one side of a membrane to the other.","definition_xrefs":["GOC:dgf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal ion transmembrane transporter activity","termid":"GO:0046873"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00211":null,"SJAG_01639":null,"SJAG_02484":null,"SJAG_02578":null,"SJAG_03516":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"magnesium ion transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-5336453","MetaCyc:TRANS-RXN-141","Reactome:R-HSA-5339538","Reactome:R-HSA-442661","Reactome:R-HSA-5336466","RHEA:29827","Reactome:R-HSA-5339528","Reactome:R-HSA-5336454"],"termid":"GO:0015095","terms_by_termid":{"GO:0015095":null}}


id: PBO:0014574
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycosidase hydrolase family Thirty One","termid":"PBO:0014574"}


id: PATO:0002120
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering a bearer by virtue of the bearer's ability to generate pus.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"composition","termid":"PATO:0000025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"suppurative","synonyms":[{"name":"purulent","type":"related"}],"termid":"PATO:0002120"}


id: GO:0050352
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + trimethylamine N-oxide = dimethylamine + formaldehyde.","definition_xrefs":["RHEA:20217","EC:4.1.2.32"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"trimethylamine-oxide aldolase activity","secondary_identifiers":["KEGG_REACTION:R02512","MetaCyc:TRIMETHYLAMINE-OXIDE-ALDOLASE-RXN","UM-BBD_reactionID:r1409"],"synonyms":[{"name":"trimethylamine N-oxide aldolase activity","type":"related"},{"name":"trimethylamine N-oxide demethylase activity","type":"related"},{"name":"trimethylamine N-oxide formaldehyde-lyase activity","type":"related"},{"name":"trimethylamine-N-oxide formaldehyde-lyase (dimethylamine-forming)","type":"related"},{"name":"trimethylamine-N-oxide formaldehyde-lyase activity","type":"related"}],"termid":"GO:0050352"}


id: PBO:0031111
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cellular_response_to_reactive_oxygen_species_during_G0_phase","termid":"PBO:0031111"}


id: PBO:0034214
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-indirectly_activates","termid":"PBO:0034214"}


id: PBO:0066711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 8","termid":"PBO:0066711"}


id: PBO:0005788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogene wtf element Wtf24","termid":"PBO:0005788"}


id: PBO:0058282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4659a","termid":"PBO:0058282"}


id: PBO:0042682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCAAT enhancer binding protein delta","termid":"PBO:0042682"}


id: PBO:0112692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome-b5 reductase activity/ NAD(P)H-dependent reductase for Dph3, Cbr1","termid":"PBO:0112692"}


id: PBO:0059486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionine sulfoxide reductase B1 pseudogene 1","termid":"PBO:0059486"}


id: PBO:0000548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit IV (predicted)","termid":"PBO:0000548"}


id: PBO:0029052
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_degradation","termid":"PBO:0029052"}


id: GO:0120078
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules that contributes to the formation of a blood vessel network.","definition_xrefs":["GOC:cvs","PMID:28264837"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell adhesion","termid":"GO:0007155"},{"relation_name":"part_of","term_name":"angiogenic sprout fusion","termid":"GO:0120077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"cell adhesion involved in sprouting angiogenesis","synonyms":[{"name":"cell adhesion involved in blood vessel anastomosis","type":"exact"},{"name":"cell adhesion involved in vascular anastomosis","type":"related"}],"termid":"GO:0120078"}


id: GO:1901064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving syringal lignin.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lignin metabolic process","termid":"GO:0009808"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"syringal lignin metabolic process","synonyms":[{"name":"S-lignin metabolic process","type":"exact"},{"name":"syringal lignin metabolism","type":"exact"}],"termid":"GO:1901064"}


id: GO:0042563
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A protein complex which usually consists of three components, e.g. in Xenopus, the importin alpha-subunit/CAS/Ran, and which functions to transport the importin alpha-subunit out of the nucleus through the nuclear pore.","definition_xrefs":["GOC:jl","PMID:9323123","PMID:9323134"],"gene_count":0,"genotype_count":0,"name":"obsolete importin alpha-subunit nuclear export complex (obsolete GO:0042563)","termid":"GO:0042563"}


id: GO:0052007
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism in its host resulting in the formation of substances. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete biosynthesis by symbiont of substance in host (obsolete GO:0052007)","synonyms":[{"name":"biosynthesis by organism of substance in host","type":"exact"}],"termid":"GO:0052007"}


id: GO:0070703
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The outer of two mucus layers secreted by epithelial cells in the colon; the outer mucus layer is loosely packed and can be colonized by bacteria.","definition_xrefs":["PMID:19432394","GOC:mah","GOC:mm2","PMID:18806221"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mucus layer","termid":"GO:0070701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005576","GO:0005575"],"is_obsolete":false,"name":"outer mucus layer","termid":"GO:0070703"}


id: PBO:0028600
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_transcription_initiation_from_RNA_polymerase_III_promoter","termid":"PBO:0028600"}


id: FYPO:0000525
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which pexophagy does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"},{"relation_name":"is_a","term_name":"abnormal autophagy","termid":"FYPO:0008082"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished peroxisome degradation","synonyms":[{"name":"absent pexophagy","type":"exact"},{"name":"peroxisome degradation abolished","type":"exact"},{"name":"pexophagy abolished","type":"exact"},{"name":"pexophagy: absent","type":"related"}],"termid":"FYPO:0000525"}


id: PBO:0052461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLF transcription factor 9","termid":"PBO:0052461"}


id: PR:P20772
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A trifunctional purine biosynthetic protein adenosine-3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03581"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bifunctional purine biosynthetic protein ADE1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC405.01","secondary_identifiers":["UniProtKB:P20772"],"synonyms":[{"name":"Spom972h-GART","type":"exact"}],"termid":"PR:P20772"}


id: PBO:0078888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (anticodon CTG) 1-5","termid":"PBO:0078888"}


id: GO:0046927
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The racemization of peptidyl-L-threo-threonine at the alpha-carbon to form D-allo-threonine. This is coupled with the formation of the cross-link 2-(S-L-cysteinyl)-D-allo-threonine.","definition_xrefs":["PMID:12696888"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-L-amino acid racemization","termid":"GO:0018085"},{"relation_name":"is_a","term_name":"peptidyl-threonine modification","termid":"GO:0018210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0006520"],"is_obsolete":false,"name":"peptidyl-threonine racemization","termid":"GO:0046927"}


id: FYPO:0000513
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which karyogamy involved in conjugation with cellular fusion begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear fusion during mating","termid":"FYPO:0000510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000301"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of nuclear fusion during mating","synonyms":[{"name":"delayed nuclear fusion during mating","type":"exact"},{"name":"delayed onset of karyogamy","type":"exact"},{"name":"delayed onset of karyogamy involved in conjugation with cellular fusion","type":"exact"},{"name":"nuclear fusion during mating: delayed","type":"related"}],"termid":"FYPO:0000513"}


id: GO:0060212
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nuclear-transcribed mRNA poly(A) tail shortening","termid":"GO:0060211"},{"relation_name":"is_a","term_name":"negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay","termid":"GO:1900152"},{"relation_name":"negatively_regulates","term_name":"nuclear-transcribed mRNA poly(A) tail shortening","termid":"GO:0000289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"negatively_regulates","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0016071","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of nuclear-transcribed mRNA poly(A) tail shortening","synonyms":[{"name":"negative regulation of 3' to 5' mRNA deadenylation","type":"related"},{"name":"negative regulation of mRNA deadenylation","type":"related"},{"name":"negative regulation of nuclear mRNA poly(A) tail shortening","type":"related"}],"termid":"GO:0060212"}


id: MOD:01374
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A modification that effectively oxygenates C5 of an L-leucine residue to form a (2S,4R)-5-oxoleucine.","definition_xrefs":["PubMed:16858410","RESID:AA0444","ChEBI:43739"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon oxygenated residue","termid":"MOD:00679"},{"relation_name":"is_a","term_name":"modified L-leucine residue","termid":"MOD:00911"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(2S,4R)-5-oxoleucine","synonyms":[{"name":"(2S,4R)-2-amino-4-methyl-5-oxopentanoic acid","type":"exact"},{"name":"(2S,4R)-5-oxoleucine","type":"exact"},{"name":"(4R)-5-oxo-L-leucine","type":"exact"}],"termid":"MOD:01374"}


id: GO:0008696
data:
  {"annotated_genes":["SJAG_02225"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[102078],"is_not":false,"summary":null,"term":"GO:0008696"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-amino-4-deoxychorismate = 4-aminobenzoate + H+ + pyruvate.","definition_xrefs":["EC:4.1.3.38","RHEA:16201"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxo-acid-lyase activity","termid":"GO:0016833"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02225":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"4-amino-4-deoxychorismate lyase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R05553","MetaCyc:ADCLY-RXN"],"synonyms":[{"name":"4-amino-4-deoxychorismate pyruvate-lyase (4-aminobenzoate-forming)","type":"related"},{"name":"4-amino-4-deoxychorismate pyruvate-lyase activity","type":"related"},{"name":"ADC lyase activity","type":"related"},{"name":"aminodeoxychorismate lyase activity","type":"exact"},{"name":"enzyme X activity","type":"related"},{"name":"p-aminobenzoate synthetase","type":"related"},{"name":"para-aminobenzoic acid (PABA) synthase","type":"related"},{"name":"para-aminobenzoic acid synthase","type":"related"}],"termid":"GO:0008696","terms_by_termid":{"GO:0008696":null}}


id: GO:0120245
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a terminal acetylenic compound, a compound which contains a terminal alkyne moiety in which a carbon of the carbon-carbon triple bond (aka C#C) moiety is attached to a hydrogen atom.","definition_xrefs":["DOI:10.1007/978-1-4615-4913-0_3","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terminal acetylenic compound metabolic process","termid":"GO:0120244"},{"relation_name":"is_a","term_name":"acetylenic compound catabolic process","termid":"GO:0120248"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"terminal acetylenic compound catabolic process","synonyms":[{"name":"terminal alkyne substituted compound breakdown","type":"exact"},{"name":"terminal alkyne substituted compound catabolic process","type":"exact"},{"name":"terminal alkyne substituted compound catabolism","type":"exact"},{"name":"terminal alkyne substituted compound degradation","type":"exact"}],"termid":"GO:0120245"}


id: GO:0032847
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of a process that reduces the internal pH of a cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biological process","termid":"GO:0050789"},{"relation_name":"is_a","term_name":"regulation of intracellular pH","termid":"GO:0051453"},{"relation_name":"regulates","term_name":"intracellular pH reduction","termid":"GO:0051452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular pH reduction","synonyms":[{"name":"regulation of cell pH reduction","type":"exact"},{"name":"regulation of cellular acidification","type":"exact"},{"name":"regulation of intracellular acidification","type":"related"},{"name":"regulation of intracellular pH reduction","type":"exact"},{"name":"regulation of reduction of cellular pH","type":"exact"},{"name":"regulation of reduction of pH in cell","type":"exact"}],"termid":"GO:0032847"}


id: PBO:0043439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calponin 1","termid":"PBO:0043439"}


id: PBO:0063279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin gamma subfamily A, 5","termid":"PBO:0063279"}


id: PBO:0005737
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"condensin subunit CuT3 Interacting protein","termid":"PBO:0005737"}


id: FYPO:0001551
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to zinc ion starvation is higher than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level during vegetative growth","termid":"FYPO:0001327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0006551"],"is_obsolete":false,"name":"increased protein level during cellular response to zinc ion starvation","synonyms":[{"name":"increased protein accumulation during cellular response to zinc ion starvation","type":"related"},{"name":"increased protein level during cellular response to zinc ion depletion","type":"exact"},{"name":"increased protein level during cellular response to zinc ion deprivation","type":"exact"},{"name":"increased protein level during cellular response to zinc ion starvation during mitotic cell cycle","type":"related"},{"name":"increased protein level during cellular response to zinc ion starvation during vegetative growth","type":"exact"},{"name":"increased protein level during cellular response to zinc starvation","type":"exact"}],"termid":"FYPO:0001551"}


id: SO:0001697
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of sequence identified by CHiP seq technology to contain a protein binding site.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"contains","term_name":"protein_binding_site","termid":"SO:0000410"},{"relation_name":"is_a","term_name":"experimentally_defined_binding_region","termid":"SO:0001696"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ChIP_seq_region","synonyms":[{"name":"ChIP seq region","type":"related"}],"termid":"SO:0001697"}


id: PR:O14062
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps1201 gene.","definition_xrefs":["UniProtKB:O14062","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S12-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC962.04","synonyms":[{"name":"Spom972h-rps1201","type":"exact"}],"termid":"PR:O14062"}


id: PBO:0075980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal transducer and activator of transcription 5A","termid":"PBO:0075980"}


id: GO:0046666
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Programmed cell death that occurs in the developing retina.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"programmed cell death involved in cell development","termid":"GO:0010623"},{"relation_name":"part_of","term_name":"eye morphogenesis","termid":"GO:0048592"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"retinal cell programmed cell death","synonyms":[{"name":"programmed cell death, retina cells","type":"exact"},{"name":"programmed cell death, retinal cells","type":"exact"},{"name":"retina cell programmed cell death","type":"exact"},{"name":"retina programmed cell death","type":"exact"},{"name":"retinal programmed cell death","type":"exact"}],"termid":"GO:0046666"}


id: PBO:0047432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FCF1 pseudogene 3","termid":"PBO:0047432"}


id: PBO:0055063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2479","termid":"PBO:0055063"}


id: FYPO:0002170
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that is elongated and branched (and septated), and undergoes two or more rounds of cell division and then dies.","definition_xrefs":["PomBase:al","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, multiple cell divisions, elongated cell","termid":"FYPO:0002262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000005","FYPO:0000004"],"is_obsolete":false,"name":"inviable after spore germination, multiple cell divisions, branched, elongated cell","synonyms":[{"name":"inviable after spore germination, multiple cell divisions, elongated and branched cell","type":"exact"},{"name":"inviable following spore germination, multiple cell divisions, branched, elongated cell","type":"exact"},{"name":"inviable germinated spore, multiple cell divisions, branched, elongated cell","type":"exact"},{"name":"lethal after spore germination, multiple cell divisions, branched, elongated cell","type":"exact"}],"termid":"FYPO:0002170"}


id: FYPO:0003331
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is decreased during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein kinase activity","termid":"FYPO:0001382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000707","FYPO:0001985","FYPO:0000654","FYPO:0000652"],"is_obsolete":false,"name":"decreased protein kinase activity during mitotic interphase","synonyms":[{"name":"reduced protein kinase activity during mitotic interphase","type":"exact"}],"termid":"FYPO:0003331"}


id: PBO:0071661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37a pseudogene 2","termid":"PBO:0071661"}


id: GO:0006275
data:
  {"annotated_genes":["SJAG_03097","SJAG_03438","SJAG_03160","SJAG_00247","SJAG_04623","SJAG_02074","SJAG_03048","SJAG_00364","SJAG_03997","SJAG_04855","SJAG_01068","SJAG_01210","SJAG_03695","SJAG_03720","SJAG_02162","SJAG_02724","SJAG_04671"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104888,112867],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903464"},{"annotations":[93809,98389,85428,104889],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903467"},{"annotations":[99336,113282,108040],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903468"},{"annotations":[85128,98395,112245,102610],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904514"},{"annotations":[98399],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903465"},{"annotations":[95383],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903466"},{"annotations":[99240],"is_not":false,"rel_names":["is_a","regulates"],"summary":null,"term":"GO:1902681"},{"annotations":[102625,98297,104513],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043111"},{"annotations":[102626,99241,95384,104514],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0011000"},{"annotations":[111025,98298,95385],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031582"},{"annotations":[95386],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090001"},{"annotations":[98299],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071807"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of DNA replication.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA metabolic process","termid":"GO:0051052"},{"relation_name":"regulates","term_name":"DNA replication","termid":"GO:0006260"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00247":null,"SJAG_00364":null,"SJAG_01068":null,"SJAG_01210":null,"SJAG_02074":null,"SJAG_02162":null,"SJAG_02724":null,"SJAG_03048":null,"SJAG_03097":null,"SJAG_03160":null,"SJAG_03438":null,"SJAG_03695":null,"SJAG_03720":null,"SJAG_03997":null,"SJAG_04623":null,"SJAG_04671":null,"SJAG_04855":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006260"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0006260"],"is_obsolete":false,"name":"regulation of DNA replication","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0006275","terms_by_termid":{"GO:0011000":null,"GO:0031582":null,"GO:0043111":null,"GO:0071807":null,"GO:0090001":null,"GO:1902681":null,"GO:1903464":null,"GO:1903465":null,"GO:1903466":null,"GO:1903467":null,"GO:1903468":null,"GO:1904514":null}}


id: GO:0086033
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A G protein-coupled acetylcholine receptor signaling pathway that contributes to a decrease in frequency or rate of heart contraction. Binding of acetylcholine to a G protein-coupled (muscarinic) receptor on the surface of the signal-receiving cell results in the alpha subunit of a coupled G-protein binding to GTP. This results in the separation of the beta-gamma complex from the alpha subunit. Both the alpha subunit, and the beta-gamma complex can continue to signal to bring about membrane hyperpolarization and a reduction in heart rate.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11","Wikipedia:G_protein-gated_ion_channel"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled acetylcholine receptor signaling pathway involved in heart process","termid":"GO:0086093"},{"relation_name":"part_of","term_name":"negative regulation of heart rate by acetylcholine","termid":"GO:0003063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"G protein-coupled acetylcholine receptor signaling pathway involved in negative regulation of heart rate","synonyms":[{"name":"G-protein coupled acetylcholine receptor signaling pathway involved in negative regulation of heart rate","type":"exact"},{"name":"M2 receptor signalling pathway involved in negative regulation of heart rate","type":"exact"},{"name":"muscarinic acetylcholine receptor signaling pathway involved in negative regulation of heart rate","type":"exact"},{"name":"muscarinic receptor signalling pathway involved in negative regulation of heart rate","type":"exact"}],"termid":"GO:0086033"}


id: GO:0098993
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the synaptic vesicle membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete anchored component of synaptic vesicle membrane (obsolete GO:0098993)","termid":"GO:0098993"}


id: GO:0140242
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Translation that occurs at the postsynapse.","definition_xrefs":["PMID:20427644"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translation at synapse","termid":"GO:0140241"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"translation at postsynapse","termid":"GO:0140242"}


id: PBO:0089563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein Tsr2","termid":"PBO:0089563"}


id: PBO:0029508
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_swollen_spore","termid":"PBO:0029508"}


id: GO:1990562
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An exosome complex that is assembled in the multivesicular body (MVB) membrane and chaperoned to the exosome by the ESCRT-III machinery.","definition_xrefs":["PMID:22660413","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular exosome complex","termid":"GO:1990563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0005576","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"syndecan-syntenin-ALIX complex","synonyms":[{"name":"exosome complex","type":"broad"}],"termid":"GO:1990562"}


id: PBO:0054200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1580","termid":"PBO:0054200"}


id: MOD:01979
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O-(L-isoglutamyl)-L-threonine, using free L-glutamine and releasing ammonia, or using a peptidyl L-glutamine and releasing ammonia.","definition_xrefs":["PubMed:8706862","RESID:AA0536"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"crosslinked L-threonine residue","termid":"MOD:02056"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-(L-isoglutamyl)-L-threonine","synonyms":[{"name":"(2S)-2-amino-5-([(1S,2R)-1-amino-1-carboxypropan-2-yl]oxy)-5-oxopentanoic acid","type":"exact"},{"name":"(2S,3R)-2-amino-3-([(4S)-4-amino-4-carboxybutanoyl]oxy)-propanoic acid","type":"exact"},{"name":"5-(threon-O3-yl)glutamate","type":"exact"},{"name":"O(beta)-(gamma-glutamyl)threonine","type":"exact"},{"name":"O-(L-isoglutamyl)-L-threonine","type":"exact"},{"name":"O3-(isoglutamyl)threonine","type":"exact"}],"termid":"MOD:01979"}


id: GO:1990914
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the plasma membrane consisting of the gene products that penetrate only the periplasmic side of the membrane.","definition_xrefs":["PMID:15919996","GOC:bhm"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of periplasmic side of plasma membrane (obsolete GO:1990914)","termid":"GO:1990914"}


id: GO:0046834
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of introducing one or more phosphate groups into a lipid, any member of a group of substances soluble in lipid solvents but only sparingly soluble in aqueous solvents.","definition_xrefs":["GOC:bf","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorylation","termid":"GO:0016310"},{"relation_name":"is_a","term_name":"lipid modification","termid":"GO:0030258"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"lipid phosphorylation","termid":"GO:0046834"}


id: GO:0039653
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont inhibits or disrupts transcription of genes into mRNA in its host. For example, symbiont proteins can interfere with host RNA polymerase or with transcription factors. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["VZ:1577"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host gene expression","termid":"GO:0039657"},{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host transcription","termid":"GO:0052026"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host transcription","synonyms":[{"name":"host transcription shut-off","type":"exact"},{"name":"host transcription shutoff by virus","type":"narrow"},{"name":"suppression by virus of host DNA-dependent transcription","type":"narrow"},{"name":"suppression by virus of host transcription","type":"narrow"}],"termid":"GO:0039653"}


id: FYPO:0003043
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the Mei2 nuclear dot is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to Mei2 nuclear dot","termid":"FYPO:0002958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"increased protein localization to Mei2 nuclear dot","synonyms":[{"name":"increased protein localisation to Mei2 nuclear dot","type":"exact"},{"name":"increased protein localization to meiRNA nuclear dot","type":"related"}],"termid":"FYPO:0003043"}


id: SO:0002325
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A splice_donor_variant (SO:0001575) that is degraded by nonsense-mediated decay (NMD).","definition_xrefs":["GenCC:AR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"splice_donor_variant","termid":"SO:0001575"},{"relation_name":"is_a","term_name":"NMD_triggering_variant","termid":"SO:0002319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splice_donor_variant_NMD_triggering","synonyms":[{"name":"splice donor variant-NMD triggering","type":"exact"},{"name":"splice donor variant-nonsense-mediated decay triggering","type":"exact"}],"termid":"SO:0002325"}


id: PBO:0078317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor delta diversity 2","termid":"PBO:0078317"}


id: GO:0075301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a relatively unspecialized cell acquires specialized features of a specific cell type occurring during spore germination, the physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cell differentiation involved in spore germination (obsolete GO:0075301)","termid":"GO:0075301"}


id: FYPO:0006975
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell is too low to detect during the meiotic cell cycle. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA absent from cell","termid":"FYPO:0001889"},{"relation_name":"is_a","term_name":"decreased RNA level during meiosis","termid":"FYPO:0002959"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0006551","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"RNA absent from cell during meiotic cell cycle","synonyms":[{"name":"transcripts absent from cell during meiotic cell cycle","type":"exact"},{"name":"undetectable cellular RNA level during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0006975"}


id: PBO:0026961
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-actin_cortical_patches_present_in_increased_numbers","termid":"PBO:0026961"}


id: GO:0140102
data:
  {"annotated_genes":["SJAG_02821","SJAG_03877","SJAG_03713","SJAG_03016","SJAG_03755","SJAG_02350","SJAG_03332","SJAG_02417","SJAG_03289","SJAG_00722","SJAG_03773","SJAG_03008","SJAG_00943","SJAG_01958","SJAG_02281","SJAG_02024"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105096],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052909"},{"annotations":[88320],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106388"},{"annotations":[91236],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052907"},{"annotations":[83499,94882],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016433"},{"annotations":[94440],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106142"},{"annotations":[59257],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000179"},{"annotations":[91665,109625],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009383"},{"annotations":[90947],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070043"},{"annotations":[85695],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070039"},{"annotations":[87369],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070037"},{"annotations":[97369,85696,104382],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008650"},{"annotations":[112213],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070042"},{"annotations":[106202,104099],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008649"}]},"cv_name":"molecular_function","definition":"Catalytic activity that acts to modify a ribosomal RNA.","definition_xrefs":["GOC:molecular_function_refactoring","GOC:pdt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic activity, acting on RNA","termid":"GO:0140098"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00722":null,"SJAG_00943":null,"SJAG_01958":null,"SJAG_02024":null,"SJAG_02281":null,"SJAG_02350":null,"SJAG_02417":null,"SJAG_02821":null,"SJAG_03008":null,"SJAG_03016":null,"SJAG_03289":null,"SJAG_03332":null,"SJAG_03713":null,"SJAG_03755":null,"SJAG_03773":null,"SJAG_03877":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140098","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"catalytic activity, acting on a rRNA","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null},"termid":"GO:0140102","terms_by_termid":{"GO:0000179":null,"GO:0008649":null,"GO:0008650":null,"GO:0009383":null,"GO:0016433":null,"GO:0052907":null,"GO:0052909":null,"GO:0070037":null,"GO:0070039":null,"GO:0070042":null,"GO:0070043":null,"GO:0106142":null,"GO:0106388":null}}


id: PBO:0070787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 17","termid":"PBO:0070787"}


id: GO:1903150
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any calcium ion transmembrane transporter activity that is involved in calcium ion import into cell.","definition_xrefs":["ISBN:0-8249-3695-6","GOC:TermGenie","GOC:dos","GO_REF:0000061"],"gene_count":0,"genotype_count":0,"name":"obsolete calcium ion transmembrane transporter activity involved in calcium ion import into cell (obsolete GO:1903150)","synonyms":[{"name":"calcium ion transmembrane transporter activity involved in calcium ion import into cell","type":"exact"},{"name":"calcium ion transmembrane transporter activity involved in calcium ion uptake into cell","type":"exact"}],"termid":"GO:1903150"}


id: GO:0052352
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism in its symbiont resulting in the formation of substances. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete biosynthesis by host of substance in symbiont (obsolete GO:0052352)","termid":"GO:0052352"}


id: PR:O14002
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mak2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14002"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxide stress-activated histidine kinase mak2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC27E2.09","synonyms":[{"name":"Spom972h-mak2","type":"exact"},{"name":"his-Asp phosphorelay kinase phk1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"mcs4-associated kinase 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14002"}


id: GO:0038124
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding of a heterodimeric TLR6:TLR2 complex, followed by transmission of the signal by the activated receptor, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:nhn","GOC:signaling","PMID:17318230"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toll-like receptor signaling pathway","termid":"GO:0002224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"toll-like receptor TLR6:TLR2 signaling pathway","synonyms":[{"name":"TLR2:TLR6 signaling pathway","type":"exact"},{"name":"toll-like receptor TLR6:TLR2 signalling pathway","type":"exact"}],"termid":"GO:0038124"}


id: PR:O13798
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cid16 gene.","definition_xrefs":["UniProtKB:O13798","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caffeine-induced protein 16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17H9.01","synonyms":[{"name":"Spom972h-cid16","type":"exact"}],"termid":"PR:O13798"}


id: PBO:0074829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 25","termid":"PBO:0074829"}


id: PBO:0072242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S20 pseudogene 17","termid":"PBO:0072242"}


id: GO:0071092
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha3-beta1 integrin complex bound to tissue transglutaminase.","definition_xrefs":["PMID:10684262"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"alpha3-beta1 integrin-tissue transglutaminase complex","synonyms":[{"name":"ITGA3-ITGB1-TGM2 complex","type":"narrow"}],"termid":"GO:0071092"}


id: PBO:0088392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor Rsv2","termid":"PBO:0088392"}


id: GO:0101030
data:
  {"annotated_genes":["SJAG_02179","SJAG_01781","SJAG_06284","SJAG_00683"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85746,91838,94617,94618],"is_not":false,"summary":null,"term":"GO:0101030"}]},"cv_name":"biological_process","definition":"The modification of a tRNA anticodon loop by replacing guanine with queuonine. Reaction is tRNA guanine + queuine = tRNA queuine + guanine.","definition_xrefs":["GOC:vw","PMID:24911101","GOC:PomBase"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA modification","termid":"GO:0006400"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00683":null,"SJAG_01781":null,"SJAG_02179":null,"SJAG_06284":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006399"}],"interesting_parent_ids":["GO:0010467","GO:0006399","GO:0008150"],"is_obsolete":false,"name":"tRNA-guanine transglycosylation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0101030","terms_by_termid":{"GO:0101030":null}}


id: GO:0120044
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The tapered base of the stereocilium adjacent to where it joins the hair cell body. This region contains a rootlet comprised of bundled actin filaments which spans the joint and stabilizes the stereocilium.","definition_xrefs":["GOC:krc","PMID:20170899"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"stereocilium","termid":"GO:0032420"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"stereocilium base","synonyms":[{"name":"stereocilium taper","type":"exact"}],"termid":"GO:0120044"}


id: PBO:0017594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial translation protein Mtf2 (predicted)","termid":"PBO:0017594"}


id: PBO:0055570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3006","termid":"PBO:0055570"}


id: PBO:0042132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil alpha-helical rod protein 1","termid":"PBO:0042132"}


id: GO:0097572
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"One of the two nuclei found in Giardia species (trophozoite stage). It is located on the right side of the cell when viewed from the dorsal side.","definition_xrefs":["GOC:giardia","ISBN:0-444-81258-X"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus","termid":"GO:0005634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005575"],"is_obsolete":false,"name":"right nucleus","termid":"GO:0097572"}


id: PBO:0067235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 306, pseudogene","termid":"PBO:0067235"}


id: MOD:00590
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["PubMed:15549660","Unimod:270"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophilic addtion to cytopiloyne","synonyms":[{"name":"Cytopiloyne","type":"related"},{"name":"nucleophilic addtion to cytopiloyne","type":"related"}],"termid":"MOD:00590"}


id: PBO:0052208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium voltage-gated channel subfamily Q member 4","termid":"PBO:0052208"}


id: PBO:0005600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxylesterase-lipase family protein","termid":"PBO:0005600"}


id: GO:1901389
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of transforming growth factor beta activation.","definition_xrefs":["GOC:TermGenie","GOC:sl"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transforming growth factor beta activation (obsolete GO:1901389)","synonyms":[{"name":"down regulation of L-TGF-beta activation","type":"exact"},{"name":"down regulation of TGF-B activation","type":"exact"},{"name":"down regulation of TGF-beta activation","type":"exact"},{"name":"down regulation of TGFB activation","type":"exact"},{"name":"down regulation of TGFbeta activation","type":"exact"},{"name":"down regulation of latent TGF-beta activation","type":"exact"},{"name":"down regulation of transforming growth factor beta activation","type":"exact"},{"name":"down-regulation of L-TGF-beta activation","type":"exact"},{"name":"down-regulation of TGF-B activation","type":"exact"},{"name":"down-regulation of TGF-beta activation","type":"exact"},{"name":"down-regulation of TGFB activation","type":"exact"},{"name":"down-regulation of TGFbeta activation","type":"exact"},{"name":"down-regulation of latent TGF-beta activation","type":"exact"},{"name":"down-regulation of transforming growth factor beta activation","type":"exact"},{"name":"downregulation of L-TGF-beta activation","type":"exact"},{"name":"downregulation of TGF-B activation","type":"exact"},{"name":"downregulation of TGF-beta activation","type":"exact"},{"name":"downregulation of TGFB activation","type":"exact"},{"name":"downregulation of TGFbeta activation","type":"exact"},{"name":"downregulation of latent TGF-beta activation","type":"exact"},{"name":"downregulation of transforming growth factor beta activation","type":"exact"},{"name":"inhibition of L-TGF-beta activation","type":"exact"},{"name":"inhibition of TGF-B activation","type":"exact"},{"name":"inhibition of TGF-beta activation","type":"exact"},{"name":"inhibition of TGFB activation","type":"exact"},{"name":"inhibition of TGFbeta activation","type":"exact"},{"name":"inhibition of latent TGF-beta activation","type":"exact"},{"name":"inhibition of transforming growth factor beta activation","type":"narrow"},{"name":"negative regulation of L-TGF-beta activation","type":"exact"},{"name":"negative regulation of TGF-B activation","type":"exact"},{"name":"negative regulation of TGF-beta activation","type":"exact"},{"name":"negative regulation of TGFB activation","type":"exact"},{"name":"negative regulation of TGFbeta activation","type":"exact"},{"name":"negative regulation of latent TGF-beta activation","type":"exact"}],"termid":"GO:1901389"}


id: GO:1903378
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of oxidative stress-induced neuron intrinsic apoptotic signaling pathway.","definition_xrefs":["GOC:PARL","GO_REF:0000058","GOC:bf","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of neuron apoptotic process","termid":"GO:0043525"},{"relation_name":"is_a","term_name":"positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway","termid":"GO:1902177"},{"relation_name":"is_a","term_name":"regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway","termid":"GO:1903376"},{"relation_name":"positively_regulates","term_name":"neuron intrinsic apoptotic signaling pathway in response to oxidative stress","termid":"GO:0036480"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway","synonyms":[{"name":"activation of neuron apoptosis in response to oxidative stress","type":"related"},{"name":"activation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress","type":"narrow"},{"name":"positive regulation of neuron apoptosis in response to oxidative stress","type":"related"},{"name":"positive regulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress","type":"exact"},{"name":"up regulation of neuron apoptosis in response to oxidative stress","type":"related"},{"name":"up regulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress","type":"exact"},{"name":"up-regulation of neuron apoptosis in response to oxidative stress","type":"related"},{"name":"up-regulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress","type":"exact"},{"name":"upregulation of neuron apoptosis in response to oxidative stress","type":"related"},{"name":"upregulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress","type":"exact"}],"termid":"GO:1903378"}


id: GO:1903265
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of tumor necrosis factor-mediated signaling pathway.","definition_xrefs":["GOC:bf","GOC:TermGenie","GOC:PARL","PMID:23453807","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine-mediated signaling pathway","termid":"GO:0001961"},{"relation_name":"is_a","term_name":"regulation of tumor necrosis factor-mediated signaling pathway","termid":"GO:0010803"},{"relation_name":"positively_regulates","term_name":"tumor necrosis factor-mediated signaling pathway","termid":"GO:0033209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of tumor necrosis factor-mediated signaling pathway","synonyms":[{"name":"activation of TNF-alpha-mediated signaling pathway","type":"narrow"},{"name":"activation of adipocytokine signaling pathway","type":"related"},{"name":"activation of tumor necrosis factor alpha-mediated signaling pathway","type":"narrow"},{"name":"activation of tumor necrosis factor-mediated signaling pathway","type":"narrow"},{"name":"activation of tumor necrosis factor-mediated signalling pathway","type":"narrow"},{"name":"positive regulation of TNF-alpha-mediated signaling pathway","type":"narrow"},{"name":"positive regulation of adipocytokine signaling pathway","type":"related"},{"name":"positive regulation of tumor necrosis factor alpha-mediated signaling pathway","type":"narrow"},{"name":"positive regulation of tumor necrosis factor-mediated signalling pathway","type":"exact"},{"name":"up regulation of TNF-alpha-mediated signaling pathway","type":"narrow"},{"name":"up regulation of adipocytokine signaling pathway","type":"related"},{"name":"up regulation of tumor necrosis factor alpha-mediated signaling pathway","type":"narrow"},{"name":"up regulation of tumor necrosis factor-mediated signaling pathway","type":"exact"},{"name":"up regulation of tumor necrosis factor-mediated signalling pathway","type":"exact"},{"name":"up-regulation of TNF-alpha-mediated signaling pathway","type":"narrow"},{"name":"up-regulation of adipocytokine signaling pathway","type":"related"},{"name":"up-regulation of tumor necrosis factor alpha-mediated signaling pathway","type":"narrow"},{"name":"up-regulation of tumor necrosis factor-mediated signaling pathway","type":"exact"},{"name":"up-regulation of tumor necrosis factor-mediated signalling pathway","type":"exact"},{"name":"upregulation of TNF-alpha-mediated signaling pathway","type":"narrow"},{"name":"upregulation of adipocytokine signaling pathway","type":"related"},{"name":"upregulation of tumor necrosis factor alpha-mediated signaling pathway","type":"narrow"},{"name":"upregulation of tumor necrosis factor-mediated signaling pathway","type":"exact"},{"name":"upregulation of tumor necrosis factor-mediated signalling pathway","type":"exact"}],"termid":"GO:1903265"}


id: GO:0032236
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions via a store-operated calcium channel.","definition_xrefs":["GOC:bf","PMID:16582901"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of calcium ion transport via store-operated calcium channel activity (obsolete GO:0032236)","synonyms":[{"name":"activation of calcium ion transport via store-operated calcium channel","type":"narrow"},{"name":"positive regulation of calcium ion transport via store-operated calcium channel activity","type":"exact"},{"name":"positive regulation of calcium transport via store-operated calcium channel","type":"exact"},{"name":"positive regulation of store-operated calcium channel activity","type":"exact"},{"name":"stimulation of calcium ion transport via store-operated calcium channel","type":"narrow"},{"name":"up regulation of calcium ion transport via store-operated calcium channel","type":"exact"},{"name":"up-regulation of calcium ion transport via store-operated calcium channel","type":"exact"},{"name":"upregulation of calcium ion transport via store-operated calcium channel","type":"exact"}],"termid":"GO:0032236"}


id: PBO:0031387
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-growth_auxotrophic_for_sulfite","termid":"PBO:0031387"}


id: GO:2000531
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the biosynthesis of fatty acids, by modulating the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of fatty acid biosynthetic process by regulation of transcription from RNA polymerase II promoter (obsolete GO:2000531)","termid":"GO:2000531"}


id: FYPO:0001825
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the export of sodium ions out of a cell occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal sodium export","termid":"FYPO:0001721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"increased sodium export","synonyms":[{"name":"increased cellular sodium export","type":"exact"},{"name":"increased sodium export during mitotic cell cycle","type":"related"},{"name":"increased sodium export during vegetative growth","type":"exact"},{"name":"increased sodium export from cell","type":"exact"},{"name":"increased sodium ion export","type":"exact"}],"termid":"FYPO:0001825"}


id: GO:0018970
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products such as gasoline and commonly used as a paint thinning agent and in other solvent applications.","definition_xrefs":["UM-BBD_pathwayID:tol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toluene-containing compound metabolic process","termid":"GO:0072490"},{"relation_name":"is_a","term_name":"hydrocarbon metabolic process","termid":"GO:0120252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"toluene metabolic process","synonyms":[{"name":"methylbenzene metabolic process","type":"exact"},{"name":"methylbenzene metabolism","type":"exact"},{"name":"toluene metabolism","type":"exact"}],"termid":"GO:0018970"}


id: PBO:0078552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 42","termid":"PBO:0078552"}


id: PBO:0039343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALX homeobox 3","termid":"PBO:0039343"}


id: PBO:0057595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR924 host gene","termid":"PBO:0057595"}


id: PBO:0087923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription factor that recruits Mediator and Swi/Snf complexes; activates transcription of genes expressed at the M/G1 phase boundary and in G1 phase; required for expression of the HO gene controlling mating type switching; localization to nucleus occurs during G1 and appears to be regulated by phosphorylation by Cdc28p kinase; SWI5 has a paralog, ACE2, that arose from the whole genome duplication","termid":"PBO:0087923"}


id: PBO:0053014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 pseudogene 1","termid":"PBO:0053014"}


id: PBO:0005906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amino-acid permease, unknown","termid":"PBO:0005906"}


id: GO:1990696
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex composed of four proteins, loss of which results in Usher Syndrome type 2 (USH2 syndrome), a leading genetic cause of combined hearing and vision loss. This complex is conserved in many species; in mice, it is composed of USH2A, GPR98 (aka ADGRV1), WHRN, and PDZD7.","definition_xrefs":["GOC:krc","PMID:25406310"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"USH2 complex","synonyms":[{"name":"USH2 quaternary protein complex","type":"exact"}],"termid":"GO:1990696"}


id: PBO:0002319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IMPACT homolog, translational regulator (predicted)","termid":"PBO:0002319"}


id: GO:0099031
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic density membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete anchored component of postsynaptic density membrane (obsolete GO:0099031)","termid":"GO:0099031"}


id: PBO:0054426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1822","termid":"PBO:0054426"}


id: GO:1904345
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of gastric mucosal blood circulation.","definition_xrefs":["PMID:10807413","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of blood circulation","termid":"GO:1903523"},{"relation_name":"is_a","term_name":"regulation of gastric mucosal blood circulation","termid":"GO:1904344"},{"relation_name":"negatively_regulates","term_name":"gastric mucosal blood circulation","termid":"GO:1990768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of gastric mucosal blood circulation","synonyms":[{"name":"down regulation of gastric mucosal blood circulation","type":"exact"},{"name":"down regulation of stomach mucosal blood circulation","type":"exact"},{"name":"down-regulation of gastric mucosal blood circulation","type":"exact"},{"name":"down-regulation of stomach mucosal blood circulation","type":"exact"},{"name":"downregulation of gastric mucosal blood circulation","type":"exact"},{"name":"downregulation of stomach mucosal blood circulation","type":"exact"},{"name":"inhibition of gastric mucosal blood circulation","type":"narrow"},{"name":"inhibition of stomach mucosal blood circulation","type":"narrow"},{"name":"negative regulation of stomach mucosal blood circulation","type":"exact"}],"termid":"GO:1904345"}


id: PBO:0003335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoribonuclease (predicted)","termid":"PBO:0003335"}


id: FYPO:0006633
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_04312:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04312","name":"pka1delta","uniquename":"SJAG_04312:allele-1"},"SJAG_04332:allele-1":{"allele_type":"amino_acid_mutation","description":"I30T,T572P","gene_uniquename":"SJAG_04332","name":"cdc25-D9","uniquename":"SJAG_04332:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115183,115111,115195],"is_not":false,"rel_names":["has_part","is_a"],"summary":null,"term":"FYPO:0001122"},{"annotations":[115325],"is_not":false,"rel_names":["has_part","is_a"],"summary":null,"term":"FYPO:0007701"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which cell length, i.e. the maximum distance between the cell ends, is greater than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell shape","termid":"FYPO:0001126"},{"relation_name":"is_a","term_name":"abnormal cell size","termid":"FYPO:0001127"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_02592":null,"SJAG_04312":null,"SJAG_04332":null},"genotype_count":4,"genotypes_by_uniquename":{"atf1delta":{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]},"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc25-D9(I30T,T572P aa)","display_uniquename":"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04332:allele-1","expression":"Not assayed or wild type"}]}]},"pka1delta":{"display_name":"pka1delta","display_uniquename":"pka1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04312:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased cell length","references_by_uniquename":{"PMID:25866389":null,"PMID:27678009":null,"PMID:31150379":null},"single_locus_annotated_genes":["SJAG_04312","SJAG_00266","SJAG_04332","SJAG_02592"],"single_locus_genotype_uniquenames":["cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","sty1delta","atf1delta","pka1delta"],"termid":"FYPO:0006633","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000102":null,"FYECO:0000137":null,"FYPO:0001122":null,"FYPO:0007701":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000003":null}}


id: GO:0009996
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that restricts, stops or prevents a cell from adopting a specific cell fate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell fate commitment","termid":"GO:0010454"},{"relation_name":"is_a","term_name":"regulation of cell fate specification","termid":"GO:0042659"},{"relation_name":"negatively_regulates","term_name":"cell fate specification","termid":"GO:0001708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell fate specification","synonyms":[{"name":"down regulation of cell fate specification","type":"exact"},{"name":"down-regulation of cell fate specification","type":"exact"},{"name":"downregulation of cell fate specification","type":"exact"},{"name":"inhibition of cell fate specification","type":"narrow"},{"name":"suppression of cell fate","type":"exact"}],"termid":"GO:0009996"}


id: PBO:0113743
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease A family member 6","termid":"PBO:0113743"}


id: PBO:0063244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin alpha 9","termid":"PBO:0063244"}


id: PBO:0033818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRAPP complex subunit 2-like Tca17 (predicted)","termid":"PBO:0033818"}


id: GO:0022404
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A multicellular organismal process involved in the periodic casting off and regeneration of an outer covering of cuticle, feathers, hair, horns, skin.","definition_xrefs":["GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"},{"relation_name":"part_of","term_name":"molting cycle","termid":"GO:0042303"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"molting cycle process","termid":"GO:0022404"}


id: PBO:0091472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sucrose alpha-glucosidase Suc2","termid":"PBO:0091472"}


id: PBO:0056600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mdm1 nuclear protein","termid":"PBO:0056600"}


id: FYPO:0003662
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of double-strand break repair via an error-free mechanism, such as homologous recombination or break-induced replication, is increased.","definition_xrefs":["PomBase:mah","PMID:10373582"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal double-strand break repair during vegetative growth","termid":"FYPO:0000777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000293"}],"interesting_parent_ids":["FYPO:0000293","FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000298","FYPO:0005447"],"is_obsolete":false,"name":"increased error-free double-strand break repair","synonyms":[{"name":"increased error-free double-strand break repair during mitotic cell cycle","type":"related"},{"name":"increased error-free double-strand break repair during vegetative growth","type":"exact"}],"termid":"FYPO:0003662"}


id: PBO:0057083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 181b-2","termid":"PBO:0057083"}


id: PBO:0063045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paralemmin","termid":"PBO:0063045"}


id: PBO:0070776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 6","termid":"PBO:0070776"}


id: PBO:0056694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic kinetochore factor","termid":"PBO:0056694"}


id: GO:0050510
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-acetyl-beta-D-galactosaminyl-(1,4)-beta-D-glucuronosyl-proteoglycan + UDP-alpha-D-glucuronate = beta-D-glucuronosyl-(1,3)-N-acetyl-beta-D-galactosaminyl-(1,4)-beta-D-glucuronosyl-proteoglycan + UDP.","definition_xrefs":["EC:2.4.1.226","MetaCyc:2.4.1.226-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucuronosyltransferase activity","termid":"GO:0015020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016757"],"is_obsolete":false,"name":"N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity","secondary_identifiers":["MetaCyc:RXN-16324","Reactome:R-HSA-3595178","Reactome:R-HSA-1971491","Reactome:R-HSA-9632034"],"synonyms":[{"name":"N-acetylgalactosaminyl-proteoglycan 3-b-glucuronosyltransferase activity","type":"exact"},{"name":"alpha-D-glucuronate:N-acetyl-beta-D-galactosaminyl-(1->4)-beta-D-glucuronosyl-proteoglycan 3-beta-glucuronosyltransferase activity","type":"related"},{"name":"chondroitin glucuronyltransferase II activity","type":"related"}],"termid":"GO:0050510"}


id: PBO:0001681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecA family recombinase Rhp51","termid":"PBO:0001681"}


id: GO:0018003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acetylation of the peptidyl-lysine of proteins to form the derivative peptidyl-N6-acetyl-L-lysine.","definition_xrefs":["RESID:AA0055"],"direct_ancestors":[{"relation_name":"is_a","term_name":"internal peptidyl-lysine acetylation","termid":"GO:0018393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-lysine N6-acetylation","termid":"GO:0018003"}


id: PBO:0001373
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.1.1.7","termid":"PBO:0001373"}


id: CHEBI:15379
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dioxygen","termid":"CHEBI:15379"}


id: GO:0010749
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of nitric oxide mediated signal transduction. Nitric oxide mediated signal transduction is The series of molecular signals mediated by the detection of nitric oxide (NO).","definition_xrefs":["GOC:BHF","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular signal transduction","termid":"GO:1902531"},{"relation_name":"regulates","term_name":"nitric oxide mediated signal transduction","termid":"GO:0007263"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of nitric oxide mediated signal transduction","synonyms":[{"name":"regulation of nitric oxide-mediated signal transduction","type":"exact"}],"termid":"GO:0010749"}


id: PR:G2TRN5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC25B8.20 gene.","definition_xrefs":["UniProtKB:G2TRN5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C25B8.20 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25B8.20","synonyms":[{"name":"Spom972h-SPAC25B8.20","type":"exact"}],"termid":"PR:G2TRN5"}


id: GO:0034453
data:
  {"annotated_genes":["SJAG_01546","SJAG_03062","SJAG_03835","SJAG_03116","SJAG_01613"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105607],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990734"},{"annotations":[92810,95248,99063,105025],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990810"}]},"cv_name":"biological_process","definition":"Any process in which a microtubule is maintained in a specific location in a cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule cytoskeleton organization","termid":"GO:0000226"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01546":null,"SJAG_01613":null,"SJAG_03062":null,"SJAG_03116":null,"SJAG_03835":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007010","GO:0000226","GO:0008150"],"is_obsolete":false,"name":"microtubule anchoring","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0034453","terms_by_termid":{"GO:1990734":null,"GO:1990810":null}}


id: PBO:0079700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubinuclein 1","termid":"PBO:0079700"}


id: PR:O75001
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA replication licensing factor MCM7 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03822","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication licensing factor mcm7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC25D12.03c","secondary_identifiers":["UniProtKB:O75001"],"synonyms":[{"name":"Spom972h-MCM7","type":"exact"},{"name":"minichromosome maintenance protein 7 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O75001"}


id: GO:0006710
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid catabolic process","termid":"GO:0006706"},{"relation_name":"is_a","term_name":"androgen metabolic process","termid":"GO:0008209"},{"relation_name":"is_a","term_name":"hormone catabolic process","termid":"GO:0042447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"androgen catabolic process","synonyms":[{"name":"androgen breakdown","type":"exact"},{"name":"androgen catabolism","type":"exact"},{"name":"androgen degradation","type":"exact"}],"termid":"GO:0006710"}


id: PR:Q9US11
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC607.07c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9US11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C607.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC607.07c","synonyms":[{"name":"Spom972h-SPAC607.07c","type":"exact"}],"termid":"PR:Q9US11"}


id: PBO:0045667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DYNAP pseudogene 2","termid":"PBO:0045667"}


id: PBO:0004764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mago-nashi homolog (predicted)","termid":"PBO:0004764"}


id: PBO:0065926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rac family small GTPase 1","termid":"PBO:0065926"}


id: PBO:0072845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"suppressor APC domain containing 2","termid":"PBO:0072845"}


id: GO:0120206
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The distal region of the photoreceptor connecting cilium is structurally unique to the photoreceptor and is maintained by retina-specific protein, SPATA7, and its interacting partners RPGR and RPGRIP1. It is essential for photoreceptor sensory cilium stability.","definition_xrefs":["GOC:krc","PMID:29899041"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"photoreceptor connecting cilium","termid":"GO:0032391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"photoreceptor distal connecting cilium","synonyms":[{"name":"DCC","type":"related"},{"name":"photoreceptor DCC","type":"related"}],"termid":"GO:0120206"}


id: PR:O42862
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- atg14 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42862"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy-related protein 14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25A8.02","synonyms":[{"name":"Spom972h-atg14","type":"exact"}],"termid":"PR:O42862"}


id: PBO:0056024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LSP1 pseudogene 2","termid":"PBO:0056024"}


id: PBO:0058759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6883","termid":"PBO:0058759"}


id: PBO:0063992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 26","termid":"PBO:0063992"}


id: PBO:0011957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase allele types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_deletion","termid":"PBO:0011957"}


id: GO:0071164
data:
  {"annotated_genes":["SJAG_03901"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[92084],"is_not":false,"summary":null,"term":"GO:0071164"}]},"cv_name":"molecular_function","definition":"Catalysis of two successive methyl transfer reactions from AdoMet to the N-2 atom of guanosine, thereby converting 7-methylguanosine in an RNA cap to 2,2,7 trimethylguanosine.","definition_xrefs":["PMID:11983179","PMID:18775984"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA methyltransferase activity","termid":"GO:0008173"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03901":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0140098","GO:0003824","GO:0016741"],"is_obsolete":false,"name":"RNA cap trimethylguanosine synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"RNA trimethylguanosine synthase activity","type":"exact"},{"name":"cap hypermethylase activity","type":"exact"},{"name":"small nuclear RNA methyltransferase activity","type":"related"},{"name":"snRNA methyltransferase activity","type":"related"}],"termid":"GO:0071164","terms_by_termid":{"GO:0071164":null}}


id: PBO:0026940
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_spore_germination_frequency","termid":"PBO:0026940"}


id: PR:O94347
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-dependent (S)-NAD(P)H-hydrate dehydratase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent (S)-NAD(P)H-hydrate dehydratase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC61.03","secondary_identifiers":["UniProtKB:O94347"],"synonyms":[{"name":"ATP-dependent NAD(P)HX dehydratase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-CARKD","type":"exact"}],"termid":"PR:O94347"}


id: PBO:0051637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IMP U3 small nucleolar ribonucleoprotein 3","termid":"PBO:0051637"}


id: MOD:00785
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tryptophan residue to N2-acetyl-L-tryptophan.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tryptophan residue","termid":"MOD:00918"},{"relation_name":"is_a","term_name":"alpha-amino acetylated residue","termid":"MOD:01458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N2-acetyl-L-tryptophan","synonyms":[{"name":"AcTrp","type":"exact"}],"termid":"MOD:00785"}


id: PBO:0082189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alcohol dehydrogenase isoenzyme V; involved in ethanol production; ADH5 has a paralog, ADH1, that arose from the whole genome duplication","termid":"PBO:0082189"}


id: GO:0070672
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-15 stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cytokine","termid":"GO:0034097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to interleukin-15","synonyms":[{"name":"response to IL-15","type":"exact"}],"termid":"GO:0070672"}


id: PBO:0079952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 5","termid":"PBO:0079952"}


id: GO:0050293
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + testololactone = H+ + testolate.","definition_xrefs":["RHEA:13721","EC:3.1.1.37"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824","GO:0016788"],"is_obsolete":false,"name":"steroid-lactonase activity","secondary_identifiers":["KEGG_REACTION:R03641","MetaCyc:STEROID-LACTONASE-RXN"],"synonyms":[{"name":"testololactone lactonohydrolase activity","type":"related"}],"termid":"GO:0050293"}


id: PBO:0076905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 261","termid":"PBO:0076905"}


id: GO:0015390
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: purine(out) + Na+(out) = nucleoside(in) + Na+(in).","definition_xrefs":["TC:2.A.41.2.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:sodium symporter activity","termid":"GO:0015370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"purine-specific nucleoside:sodium symporter activity","termid":"GO:0015390"}


id: PBO:0030253
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_trehalose_level_during_heat_shock","termid":"PBO:0030253"}


id: GO:2000125
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of octopamine or tyramine signaling pathway.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of G protein-coupled receptor signaling pathway","termid":"GO:0008277"},{"relation_name":"regulates","term_name":"octopamine or tyramine signaling pathway","termid":"GO:0007211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of octopamine or tyramine signaling pathway","synonyms":[{"name":"regulation of octopamine or tyramine signalling pathway","type":"exact"},{"name":"regulation of octopamine/tyramine signaling pathway","type":"exact"}],"termid":"GO:2000125"}


id: GO:1990836
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A matrix composed of supramolecular assemblies of lysosomal enzymes and lipids which forms at a pH of 5.0 within the lysosome.","definition_xrefs":["PMID:9395337"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"lysosomal lumen","termid":"GO:0043202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005773"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005773","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"lysosomal matrix","termid":"GO:1990836"}


id: PBO:0067072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 101, pseudogene","termid":"PBO:0067072"}


id: PBO:0040947
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 interacting protein 3 pseudogene 18","termid":"PBO:0040947"}


id: SO:0000446
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Intron located in the untranslated region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intron","termid":"SO:0000188"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UTR_intron","synonyms":[{"name":"UTR intron","type":"exact"}],"termid":"SO:0000446"}


id: FYPO:0000495
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial transport is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transport during vegetative growth","termid":"FYPO:0005973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal mitochondrial transport","synonyms":[{"name":"abnormal mitochondrial transport during mitotic cell cycle","type":"related"},{"name":"abnormal mitochondrial transport during vegetative growth","type":"exact"},{"name":"mitochondrial transport: abnormal","type":"related"}],"termid":"FYPO:0000495"}


id: GO:1900423
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A positive regulation of transcription from RNA polymerase II promoter that results in positive regulation of mating type switching.","definition_xrefs":["PMID:8804308","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter (obsolete GO:1900423)","synonyms":[{"name":"activation of mating type switching by positive regulation of transcription from RNA polymerase II promoter","type":"narrow"},{"name":"stimulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter","type":"narrow"},{"name":"up regulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up-regulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"upregulation of mating type switching by positive regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:1900423"}


id: GO:0052760
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2,4-dinitrophenol + H- = 2,4-dinitrophenol hydride Meisenheimer complex. Coenzyme F420 supplies the hydride (H-) in the reaction.","definition_xrefs":["PMID:11995829","UM-BBD_reactionID:r1071","GOC:mengo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete coenzyme F420-dependent 2,4-dinitrophenol reductase activity (obsolete GO:0052760)","synonyms":[{"name":"DNP reductase activity","type":"broad"},{"name":"coenzyme F420-dependent 2,4-dinitrophenol hydride transferase activity","type":"exact"}],"termid":"GO:0052760"}


id: PBO:0064834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory inhibitor subunit 11","termid":"PBO:0064834"}


id: PBO:0072404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S27 pseudogene 9","termid":"PBO:0072404"}


id: PBO:0058026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3976","termid":"PBO:0058026"}


id: PBO:0064516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II, I and III subunit L","termid":"PBO:0064516"}


id: PBO:0011429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA methyltransferase Tgs1 (predicted)","termid":"PBO:0011429"}


id: GO:0140746
data:
  {"annotated_genes":["SJAG_16455","SJAG_01717","SJAG_02383","SJAG_03745","SJAG_01176"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84450,86840,88296,95638,102263],"is_not":false,"summary":null,"term":"GO:0140746"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of small interfering RNA transcripts (siRNAs).","definition_xrefs":["PMID:25928405"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA catabolic process","termid":"GO:0006401"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01176":null,"SJAG_01717":null,"SJAG_02383":null,"SJAG_03745":null,"SJAG_16455":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"siRNA catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140746","terms_by_termid":{"GO:0140746":null}}


id: PR:O94597
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC622.07 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C622.07 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC622.07","synonyms":[{"name":"Spom972h-SPCC622.07","type":"exact"}],"termid":"PR:O94597"}


id: GO:1990300
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a cellulosome, an extracellular multi-enzyme complex containing several enzymes aligned on a non-catalytic scaffolding that functions to hydrolyze plant cell wall polysaccharides.","definition_xrefs":["GOC:mengo_curators","PMID:11893054","PMID:15197390"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding","termid":"GO:0005488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"cellulosome binding","secondary_identifiers":["GO:1990301"],"synonyms":[{"name":"scaffoldin complex binding","type":"narrow"}],"termid":"GO:1990300"}


id: PBO:0055748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA regulator of Akt signaling associated with HCC and RCC","termid":"PBO:0055748"}


id: GO:0060345
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of creating a trabecula in the spleen. A trabecula is a tissue element in the form of a small beam, strut or rod.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trabecula formation","termid":"GO:0060343"},{"relation_name":"part_of","term_name":"spleen development","termid":"GO:0048536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spleen trabecula formation","synonyms":[{"name":"spleen trabecula biogenesis","type":"related"},{"name":"spleen trabeculation","type":"exact"}],"termid":"GO:0060345"}


id: GO:0045261
data:
  {"annotated_genes":["SJAG_02598","SJAG_02564","SJAG_03114","SJAG_00438","SJAG_00915"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[85196],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045267"},{"annotations":[88894,99048,104785,100999],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045269"}]},"cv_name":"cellular_component","definition":"The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.","definition_xrefs":["PMID:10838056","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton-transporting two-sector ATPase complex, catalytic domain","termid":"GO:0033178"},{"relation_name":"part_of","term_name":"proton-transporting ATP synthase complex","termid":"GO:0045259"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00438":null,"SJAG_00915":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_03114":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"proton-transporting ATP synthase complex, catalytic core F(1)","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"hydrogen-transporting ATP synthase, F1 sector","type":"exact"}],"termid":"GO:0045261","terms_by_termid":{"GO:0045267":null,"GO:0045269":null}}


id: PBO:0063488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDK4 antisense RNA 1","termid":"PBO:0063488"}


id: PBO:0067448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 570, pseudogene","termid":"PBO:0067448"}


id: PBO:0082076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-aminolevulinate synthase; catalyzes the first step in the heme biosynthetic pathway; an N-terminal signal sequence is required for localization to the mitochondrial matrix; expression is regulated by Hap2p-Hap3p; has a pyridoxal phosphate cofactor whose insertion is mediated by Mcx1p","termid":"PBO:0082076"}


id: MOD:00028
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to L-tyrosine.","definition_xrefs":["PubMed:2190093","DeltaMass:0","PubMed:6120171","PubMed:6692818","ChEBI:29975","PubMed:5550972","PubMed:6061414","RESID:AA0019","PubMed:2542938"],"direct_ancestors":[{"relation_name":"is_a","term_name":"natural, standard, encoded residue","termid":"MOD:01441"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-tyrosine residue","synonyms":[{"name":"(2S)-2-amino-3-(4-hydoxyphenyl)propanoic acid","type":"exact"},{"name":"2-azanyl-3-(4-hydoxyphenyl)propanoic acid","type":"exact"},{"name":"L-tyrosine","type":"exact"},{"name":"Tyr","type":"exact"},{"name":"alpha-amino-beta-(para-hydroxyphenyl)propionic acid","type":"exact"},{"name":"p-tyrosine","type":"exact"},{"name":"para-hydroxyphenylalanine","type":"exact"}],"termid":"MOD:00028"}


id: GO:0061323
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of cells, resulting in the expansion of a cell population that contributes to the shaping of the heart.","definition_xrefs":["GOC:mtg_heart","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population proliferation","termid":"GO:0008283"},{"relation_name":"part_of","term_name":"heart morphogenesis","termid":"GO:0003007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell proliferation involved in heart morphogenesis","termid":"GO:0061323"}


id: PBO:0060081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 28","termid":"PBO:0060081"}


id: GO:0033712
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1,5-anhydro-D-mannitol + NADP+ = 1,5-anhydro-D-fructose + H+ + NADPH.","definition_xrefs":["EC:1.1.1.292","RHEA:24208"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"1,5-anhydro-D-fructose reductase (1,5-anhydro-D-mannitol-forming) activity","secondary_identifiers":["KEGG_REACTION:R08194","MetaCyc:1.1.1.292-RXN"],"synonyms":[{"name":"1,5-anhydro-D-mannitol:NADP+ oxidoreductase activity","type":"related"},{"name":"AFR","type":"related"}],"termid":"GO:0033712"}


id: PBO:0077341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 80","termid":"PBO:0077341"}


id: PBO:0091556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"But2 family protein, similar to cell surface molecules","termid":"PBO:0091556"}


id: PBO:0053525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 520","termid":"PBO:0053525"}


id: GO:0070104
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of an interleukin-6-mediated signaling pathway.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine-mediated signaling pathway","termid":"GO:0001960"},{"relation_name":"is_a","term_name":"regulation of interleukin-6-mediated signaling pathway","termid":"GO:0070103"},{"relation_name":"negatively_regulates","term_name":"interleukin-6-mediated signaling pathway","termid":"GO:0070102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of interleukin-6-mediated signaling pathway","synonyms":[{"name":"negative regulation of IL-6-mediated signaling pathway","type":"exact"},{"name":"negative regulation of interleukin-6-mediated signalling pathway","type":"exact"}],"termid":"GO:0070104"}


id: GO:0001691
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Maintains the phosphorylation state of certain molecules by associating with them and preventing them from associating with active phosphatases, and thus inhibiting the enzyme activity without interacting with the enzyme. Often pertains to proteins belonging to dual-specificity phosphatase family but lacking critical active site residues.","definition_xrefs":["GOC:ajp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase inhibitor activity","termid":"GO:0019212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0004857","GO:0003674","GO:0030234","GO:0140678","GO:0098772"],"is_obsolete":false,"name":"pseudophosphatase activity","termid":"GO:0001691"}


id: PBO:0059012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MMEL1 antisense RNA 1","termid":"PBO:0059012"}


id: PBO:0084123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hEST1A/B (SMG5/6)-like protein; contributes to environment-sensing adaptive gene expression responses; Esl2p and Esl1p contain a 14-3-3-like domain and a putative PilT N-terminus ribonuclease domain; interacts with Pex14p; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the nucleus and cytoplasm; ESL2 has a paralog, ESL1, that arose from the whole genome duplication","termid":"PBO:0084123"}


id: MOD:00996
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3'-bromo-L-tyrosine","termid":"MOD:01025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(81)Br labeled 3'-bromotyrosine","termid":"MOD:00996"}


id: PBO:0047487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferredoxin 2","termid":"PBO:0047487"}


id: PBO:0085672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in outer spore wall assembly; possible role in assembly of the dityrosine layer; similar to adjacent ORF, LOH1; irc18 loh1 double mutant exhibits reduced dityrosine fluorescence relative to single mutants; SWAT-GFP fusion protein localizes to the ER and vacuole, while mCherry fusion localizes to the vacuole; expression induced in respiratory-deficient cells and carbon-limited chemostat culture; null mutant displays increased levels of spontaneous Rad52p foci","termid":"PBO:0085672"}


id: GO:0102907
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate(3-) = diphosphoric acid + sesquisabinene.","definition_xrefs":["EC:4.2.3.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"sesquisabinene synthase activity","secondary_identifiers":["MetaCyc:RXN-8622"],"termid":"GO:0102907"}


id: PBO:0087168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase III subunit C53","termid":"PBO:0087168"}


id: PBO:0090299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ERMES complex subunit, membrane tether and lipid transfer protein Mdm12","termid":"PBO:0090299"}


id: GO:0031694
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an alpha-2A adrenergic receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adrenergic receptor binding","termid":"GO:0031690"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"alpha-2A adrenergic receptor binding","synonyms":[{"name":"alpha-2A adrenergic receptor ligand","type":"narrow"}],"termid":"GO:0031694"}


id: PBO:0045134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAAF3 antisense RNA 1","termid":"PBO:0045134"}


id: GO:0017058
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a FH1 domain of a protein, a proline-rich domain, usually located in front of a FH2 domain.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"FH1 domain binding","termid":"GO:0017058"}


id: GO:0009496
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 H+[side 1] + 2 oxidized plastocyanin + plastoquinol-1 = 2 H+[side 2] + 2 reduced plastocyanin + plastoquinone. This reaction involves the concomitant transfer of 2 H+ ions across a membrane.","definition_xrefs":["RHEA:22148"],"direct_ancestors":[{"relation_name":"is_a","term_name":"electron transfer activity","termid":"GO:0009055"},{"relation_name":"is_a","term_name":"oxidoreduction-driven active transmembrane transporter activity","termid":"GO:0015453"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor","termid":"GO:0052880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0016491","GO:0005215","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"plastoquinol--plastocyanin reductase activity","secondary_identifiers":["EC:7.1.1.6","MetaCyc:PLASTOQUINOL--PLASTOCYANIN-REDUCTASE-RXN","KEGG_REACTION:R03817"],"synonyms":[{"name":"cytochrome b6f","type":"narrow"},{"name":"cytochrome b6f complex activity","type":"related"},{"name":"plastoquinol-plastocyanin reductase activity","type":"related"},{"name":"plastoquinol/plastocyanin oxidoreductase activity","type":"related"},{"name":"plastoquinol:oxidized-plastocyanin oxidoreductase activity","type":"related"}],"termid":"GO:0009496"}


id: PBO:0082249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha subunit of the mitochondrial processing protease (MPP); essential processing enzyme that cleaves the N-terminal targeting sequences from mitochondrially imported proteins","termid":"PBO:0082249"}


id: GO:2000297
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of synapse maturation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of synapse maturation","termid":"GO:0090128"},{"relation_name":"is_a","term_name":"negative regulation of synapse organization","termid":"GO:1905809"},{"relation_name":"negatively_regulates","term_name":"synapse maturation","termid":"GO:0060074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of synapse maturation","synonyms":[{"name":"negative regulation of synaptic maturation","type":"exact"}],"termid":"GO:2000297"}


id: GO:0042203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toluene metabolic process","termid":"GO:0018970"},{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"},{"relation_name":"is_a","term_name":"toluene-containing compound catabolic process","termid":"GO:0072491"},{"relation_name":"is_a","term_name":"hydrocarbon catabolic process","termid":"GO:0120253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0008150"],"is_obsolete":false,"name":"toluene catabolic process","synonyms":[{"name":"toluene breakdown","type":"exact"},{"name":"toluene catabolism","type":"exact"},{"name":"toluene degradation","type":"exact"}],"termid":"GO:0042203"}


id: GO:0031976
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any thylakoid within a plastid.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thylakoid","termid":"GO:0009579"},{"relation_name":"part_of","term_name":"plastid","termid":"GO:0009536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"plastid thylakoid","termid":"GO:0031976"}


id: FYPO:0008004
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a protein does not localize to, and is therefore absent from, a site of mechanical stress on the cell surface where it is normally found.","definition_xrefs":["PomBase:mlr","PMID:34666001"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization","termid":"FYPO:0001375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to site of mechanical stress","termid":"FYPO:0008004"}


id: GO:0006089
data:
  {"annotated_genes":["SJAG_02960","SJAG_04674","SJAG_04726","SJAG_03804","SJAG_04404","SJAG_02106","SJAG_02988","SJAG_01596"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[62004,58885,59959,60504],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019249"},{"annotations":[107772],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903457"},{"annotations":[108814,88487,96349,84050,98810],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019243"},{"annotations":[101039,60505,58886],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061727"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving lactate, the anion of lactic acid.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"organic hydroxy compound metabolic process","termid":"GO:1901615"}],"gene_count":8,"genes_by_uniquename":{"SJAG_01596":null,"SJAG_02106":null,"SJAG_02960":null,"SJAG_02988":null,"SJAG_03804":null,"SJAG_04404":null,"SJAG_04674":null,"SJAG_04726":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"lactate metabolic process","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"2-hydroxypropanoate metabolic process","type":"exact"},{"name":"2-hydroxypropanoate metabolism","type":"exact"},{"name":"alpha-hydroxypropionate metabolic process","type":"exact"},{"name":"alpha-hydroxypropionate metabolism","type":"exact"},{"name":"lactate metabolism","type":"exact"}],"termid":"GO:0006089","terms_by_termid":{"GO:0019243":null,"GO:0019249":null,"GO:0061727":null,"GO:1903457":null}}


id: PBO:0017771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nramp family manganese ion transmembrane transporter","termid":"PBO:0017771"}


id: PBO:0063888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class P pseudogene 1","termid":"PBO:0063888"}


id: GO:0102622
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: linuron + H2O = N,O-dimethylhydroxylamine + carbon dioxide + 3,4-dichloroaniline.","definition_xrefs":["GOC:pz","EC:3.5.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016810","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"linuron hydrolase activity","secondary_identifiers":["MetaCyc:RXN-15526"],"termid":"GO:0102622"}


id: PBO:0082700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the Mcm2-7 hexameric helicase complex; MCM complex is important for priming origins of DNA replication in G1 and becomes an active ATP-dependent helicase that promotes DNA melting and elongation when activated by Cdc7p-Dbf4p in S-phase","termid":"PBO:0082700"}


id: PBO:0053461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 421","termid":"PBO:0053461"}


id: GO:2001300
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving a lipoxin. A lipoxin is a non-classic eicosanoid and signaling molecule that has four conjugated double bonds and is derived from arachidonic acid.","definition_xrefs":["GOC:mw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid derivative metabolic process","termid":"GO:1901568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"lipoxin metabolic process","synonyms":[{"name":"lipoxin metabolism","type":"exact"}],"termid":"GO:2001300"}


id: PBO:0025537
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by N. crassa TNC","termid":"PBO:0025537"}


id: PR:O42999
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mitochondrial import receptor subunit TOM7 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR16463:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial import receptor subunit tom7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC27B12.10c","secondary_identifiers":["UniProtKB:O42999"],"synonyms":[{"name":"SPBC27B12.10c","type":"related"},{"name":"Spom972h-TOMM7","type":"exact"},{"name":"translocase of outer membrane 7 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O42999"}


id: PBO:0068290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease L","termid":"PBO:0068290"}


id: GO:0005660
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A complex of proteins that interacts with delta-DNA polymerase, promoting elongation. In humans it is a heteropentamer of subunits of 140/145, 40, 38, 37 and 36.5 kDa, which form a complex with the proliferating cell nuclear antigen (PCNA) in the presence of ATP.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete delta-DNA polymerase cofactor complex (obsolete GO:0005660)","synonyms":[{"name":"delta DNA polymerase cofactor complex","type":"exact"},{"name":"delta-DNA polymerase cofactor complex","type":"exact"}],"termid":"GO:0005660"}


id: PBO:0077262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane p24 trafficking protein 10 pseudogene 2","termid":"PBO:0077262"}


id: FYPO:0006718
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the duration of protein phosphorylation is longer than normal during a cellular response to osmotic stress. All phosphorylation may be affected, or only phosphorylation of specific proteins, or even specific sites within specific proteins.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased duration of protein modification during vegetative growth","termid":"FYPO:0000548"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0002494","FYPO:0002274","FYPO:0005447"],"is_obsolete":false,"name":"increased duration of protein phosphorylation during cellular response to osmotic stress","synonyms":[{"name":"increased duration of protein phosphorylation during cellular response to osmotic stress during mitotic cell cycle","type":"related"},{"name":"increased duration of protein phosphorylation during cellular response to osmotic stress during vegetative growth","type":"exact"},{"name":"prolonged protein phosphorylation during cellular response to osmotic stress","type":"exact"}],"termid":"FYPO:0006718"}


id: GO:1904768
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to all-trans-retinol.","definition_xrefs":["GOC:TermGenie","GO_REF:0000067","GOC:kmv","PMID:19828452"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinol binding","termid":"GO:0019841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0008289","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"all-trans-retinol binding","termid":"GO:1904768"}


id: GO:0047495
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a glycerophospho group from one membrane-derived oligosaccharide to another.","definition_xrefs":["EC:2.7.8.21"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016780","GO:0003674"],"is_obsolete":false,"name":"membrane-oligosaccharide glycerophosphotransferase activity","secondary_identifiers":["MetaCyc:PGLYCEROLTRANSII-RXN"],"synonyms":[{"name":"membrane-derived-oligosaccharide-6-(glycerophospho)-D-glucose:membrane-derived-oligosaccharide-D-glucose glycerophosphotransferase activity","type":"related"},{"name":"periplasmic phosphoglycerotransferase activity","type":"narrow"},{"name":"phosphoglycerol cyclase activity","type":"related"}],"termid":"GO:0047495"}


id: PBO:0069519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 788, pseudogene","termid":"PBO:0069519"}


id: PBO:0043453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CNN3 divergent transcript","termid":"PBO:0043453"}


id: GO:0061830
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The concave part of the late spermatid head or spermatozoon head that forms the ventral portion of the head, particularly in some rodent species.","definition_xrefs":["PMID:22332112","PMID:23403943","PMID:26990065"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"sperm head","termid":"GO:0061827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"concave side of sperm head","termid":"GO:0061830"}


id: GO:0098036
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The encapsulation of the viral DNA genome within the capsid, which proceeds via cleavage of the viral DNA at specific sites to produce 3' protruding ends.","definition_xrefs":["GOC:bm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral DNA genome packaging via site-specific sequence recognition","termid":"GO:0098035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral DNA genome packaging, 3' extended cos packaging","termid":"GO:0098036"}


id: GO:0043535
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the migration of the endothelial cells of blood vessels.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endothelial cell migration","termid":"GO:0010594"},{"relation_name":"regulates","term_name":"blood vessel endothelial cell migration","termid":"GO:0043534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of blood vessel endothelial cell migration","termid":"GO:0043535"}


id: GO:0009913
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of an epidermal cell, any of the cells making up the epidermis.","definition_xrefs":["GOC:sdb_2009","GOC:tb","GOC:go_curators","GOC:mtg_sensu","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation","termid":"GO:0030855"},{"relation_name":"part_of","term_name":"epidermis development","termid":"GO:0008544"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epidermal cell differentiation","secondary_identifiers":["GO:0043355"],"synonyms":[{"name":"hypodermal cell differentiation","type":"related"}],"termid":"GO:0009913"}


id: PBO:0063809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphorylase kinase catalytic subunit gamma 1 pseudogene 1","termid":"PBO:0063809"}


id: PBO:0087110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal RNA processing element (RRPE)-binding protein; involved in the glucose-induced transition from quiescence to growth; restricted to nucleus in quiescent cells, released into cytoplasm after glucose repletion; binds Sin3p; relative distribution to the nucleus increases upon DNA replication stress","termid":"PBO:0087110"}


id: GO:0008300
data:
  {"annotated_genes":["SJAG_04954"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[61003],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016095"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of an isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprenoid metabolic process","termid":"GO:0006720"},{"relation_name":"is_a","term_name":"cellular lipid catabolic process","termid":"GO:0044242"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04954":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"isoprenoid catabolic process","references_by_uniquename":{"GO_REF:0000104":null},"secondary_identifiers":["GO:0016097"],"synonyms":[{"name":"isoprenoid breakdown","type":"exact"},{"name":"isoprenoid catabolism","type":"exact"},{"name":"isoprenoid degradation","type":"exact"},{"name":"polyisoprenoid breakdown","type":"narrow"},{"name":"polyisoprenoid catabolic process","type":"narrow"},{"name":"polyisoprenoid catabolism","type":"narrow"},{"name":"polyisoprenoid degradation","type":"narrow"},{"name":"polyterpene catabolic process","type":"narrow"},{"name":"polyterpene catabolism","type":"narrow"}],"termid":"GO:0008300","terms_by_termid":{"GO:0016095":null}}


id: PBO:0063098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"par-6 family cell polarity regulator beta","termid":"PBO:0063098"}


id: PBO:0051460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable 8/OR8-1 (pseudogene)","termid":"PBO:0051460"}


id: PBO:0081317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 101","termid":"PBO:0081317"}


id: PR:O13744
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rsm7 gene.","definition_xrefs":["UniProtKB:O13744","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"37S ribosomal protein S7, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC16E8.10c","synonyms":[{"name":"Spom972h-rsm7","type":"exact"}],"termid":"PR:O13744"}


id: GO:0043647
data:
  {"annotated_genes":["SJAG_04067","SJAG_02321","SJAG_01702","SJAG_01970","SJAG_00321","SJAG_00244","SJAG_03409","SJAG_01154","SJAG_04870","SJAG_01148"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[67047,102905,102906,111049],"is_not":false,"summary":null,"term":"GO:0043647"},{"annotations":[101188,84785],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071543"},{"annotations":[89421,111047,114809,94817,113018],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032958"},{"annotations":[111048,84786],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071545"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphate-containing compound metabolic process","termid":"GO:0006796"},{"relation_name":"is_a","term_name":"organophosphate metabolic process","termid":"GO:0019637"},{"relation_name":"is_a","term_name":"polyol metabolic process","termid":"GO:0019751"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00244":null,"SJAG_00321":null,"SJAG_01148":null,"SJAG_01154":null,"SJAG_01702":null,"SJAG_01970":null,"SJAG_02321":null,"SJAG_03409":null,"SJAG_04067":null,"SJAG_04870":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"inositol phosphate metabolic process","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null},"synonyms":[{"name":"inositol phosphate metabolism","type":"exact"},{"name":"myo-inositol phosphate metabolic process","type":"narrow"},{"name":"myo-inositol phosphate metabolism","type":"narrow"}],"termid":"GO:0043647","terms_by_termid":{"GO:0032958":null,"GO:0043647":null,"GO:0071543":null,"GO:0071545":null}}


id: PBO:0042532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 5 regulatory subunit 2","termid":"PBO:0042532"}


id: GO:0043716
data:
  {"annotated_genes":["SJAG_01404"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95041],"is_not":false,"summary":null,"term":"GO:0043716"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate + H2O = 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + phosphate. 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate is also known as HK-MTPenyl-P, and 1,2-dihydroxy-3-keto-5-methylthiopentene as DHK-MTPene.","definition_xrefs":["MetaCyc:R83-RXN","EC:3.1.3.77"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01404":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:14481","KEGG_REACTION:R07394"],"synonyms":[{"name":"2-hydroxy-3-keto-5-methylthio-phosphopentene phosphatase activity","type":"exact"},{"name":"HK-MTPenyl-1-P phosphatase activity","type":"exact"}],"termid":"GO:0043716","terms_by_termid":{"GO:0043716":null}}


id: PBO:0090909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP-GlcNAc transferase associated protein Alg14","termid":"PBO:0090909"}


id: PBO:0011474
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrolysis rate of dextrin to glucose is 7.6 (mM min-1 ml-2)","termid":"PBO:0011474"}


id: PBO:0064931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPARG related coactivator 1","termid":"PBO:0064931"}


id: PBO:0060478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NANOGNB pseudogene 3","termid":"PBO:0060478"}


id: GO:0018750
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: biuret + H2O = urea + CO2 + NH3.","definition_xrefs":["EC:3.5.1.84"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016810"],"is_obsolete":false,"name":"biuret amidohydrolase activity","secondary_identifiers":["UM-BBD_reactionID:r0846","RHEA:17525"],"termid":"GO:0018750"}


id: FYPO:0005976
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of mitotic spindle elongation is increased during anaphase B.","definition_xrefs":["PMID:27872152","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased rate of mitotic spindle elongation","termid":"FYPO:0007958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0005447","FYPO:0000641","FYPO:0000337","FYPO:0001320","FYPO:0000054","FYPO:0000002"],"is_obsolete":false,"name":"increased rate of mitotic spindle elongation during anaphase B","synonyms":[{"name":"increased rate of mitotic spindle elongation during anaphase B during vegetative growth","type":"exact"},{"name":"increased rate of mitotic spindle elongation during mitotic anaphase B","type":"exact"},{"name":"increased rate of mitotic spindle extension during anaphase B","type":"exact"},{"name":"increased rate of spindle elongation during anaphase B of mitosis","type":"exact"}],"termid":"FYPO:0005976"}


id: GO:0001658
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the branching structure of the ureteric bud is generated and organized. The ureteric bud is an epithelial tube that grows out from the metanephric duct. The bud elongates and branches to give rise to the ureter and kidney collecting tubules.","definition_xrefs":["GOC:dph","PMID:16916378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branching morphogenesis of an epithelial tube","termid":"GO:0048754"},{"relation_name":"part_of","term_name":"ureteric bud morphogenesis","termid":"GO:0060675"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"branching involved in ureteric bud morphogenesis","synonyms":[{"name":"ureteric bud branching","type":"exact"}],"termid":"GO:0001658"}


id: PBO:0070857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L13 pseudogene 10","termid":"PBO:0070857"}


id: PBO:0070254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 197 pseudogene","termid":"PBO:0070254"}


id: PBO:0091554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-alpha-hydroxytetrahydrobiopterin dehydratase","termid":"PBO:0091554"}


id: GO:1901840
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of RNA polymerase I regulatory region sequence-specific DNA binding.","definition_xrefs":["GOC:TermGenie","GOC:sart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of RNA polymerase I regulatory region sequence-specific DNA binding","termid":"GO:1901839"},{"relation_name":"is_a","term_name":"negative regulation of transcription regulatory region DNA binding","termid":"GO:2000678"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of RNA polymerase I regulatory region sequence-specific DNA binding","synonyms":[{"name":"down regulation of RNA polymerase I regulatory region sequence-specific DNA binding","type":"exact"},{"name":"down-regulation of RNA polymerase I regulatory region sequence-specific DNA binding","type":"exact"},{"name":"downregulation of RNA polymerase I regulatory region sequence-specific DNA binding","type":"exact"},{"name":"inhibition of RNA polymerase I regulatory region sequence-specific DNA binding","type":"narrow"}],"termid":"GO:1901840"}


id: GO:2000267
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of blood coagulation, intrinsic pathway.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of blood coagulation","termid":"GO:0030195"},{"relation_name":"is_a","term_name":"negative regulation of protein activation cascade","termid":"GO:2000258"},{"relation_name":"is_a","term_name":"regulation of blood coagulation, intrinsic pathway","termid":"GO:2000266"},{"relation_name":"negatively_regulates","term_name":"blood coagulation, intrinsic pathway","termid":"GO:0007597"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0051604"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0051604"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0051604","GO:0008150"],"is_obsolete":false,"name":"negative regulation of blood coagulation, intrinsic pathway","termid":"GO:2000267"}


id: GO:0010757
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of plasminogen activation. Plasminogen activation is the process in which plasminogen is processed to plasmin.","definition_xrefs":["GOC:tb","GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of plasminogen activation","termid":"GO:0010755"},{"relation_name":"is_a","term_name":"negative regulation of protein processing","termid":"GO:0010955"},{"relation_name":"negatively_regulates","term_name":"plasminogen activation","termid":"GO:0031639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0051604"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0008150","GO:0051604","GO:0010467"],"is_obsolete":false,"name":"negative regulation of plasminogen activation","synonyms":[{"name":"inhibition of plasminogen activation","type":"narrow"}],"termid":"GO:0010757"}


id: PBO:0083148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps ORF PCI8/YIL071C","termid":"PBO:0083148"}


id: GO:0010999
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of eIF2 alpha phosphorylation as a result of heme levels.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein phosphorylation","termid":"GO:0001932"},{"relation_name":"is_a","term_name":"regulation of translational initiation","termid":"GO:0006446"},{"relation_name":"is_a","term_name":"regulation of cellular response to stress","termid":"GO:0080135"},{"relation_name":"regulates","term_name":"regulation of translational initiation by eIF2 alpha phosphorylation","termid":"GO:0010998"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of eIF2 alpha phosphorylation by heme","termid":"GO:0010999"}


id: GO:0033719
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a (2R)-hydroxy-carboxylate + acceptor = a 2-oxo-carboxylate + reduced acceptor.","definition_xrefs":["EC:1.1.99.30"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2-oxo-acid reductase activity","secondary_identifiers":["RHEA:23664","MetaCyc:1.1.99.30-RXN"],"synonyms":[{"name":"(2R)-hydroxy-carboxylate:acceptor oxidoreductase activity","type":"related"},{"name":"(2R)-hydroxycarboxylate-viologen-oxidoreductase activity","type":"related"},{"name":"2-oxoacid reductase activity","type":"related"},{"name":"HVOR","type":"related"}],"termid":"GO:0033719"}


id: GO:0050891
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A chemical homeostatic process involved in the maintenance of a steady state level of water within extracellular body fluids, such as blood, xylem or phloem, of a multicellular organism. This is distinct from maintenance of cellular homeostasis, which occurs within a cell.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of body fluid levels","termid":"GO:0050878"},{"relation_name":"is_a","term_name":"multicellular organismal-level chemical homeostasis","termid":"GO:0140962"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"multicellular organismal-level water homeostasis","synonyms":[{"name":"body fluid osmoregulation","type":"related"},{"name":"multicellular organismal water homeostasis","type":"exact"}],"termid":"GO:0050891"}


id: PBO:0038961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adrenomedullin","termid":"PBO:0038961"}


id: PBO:0000242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GNS1/SUR4 family protein (predicted)","termid":"PBO:0000242"}


id: GO:0032276
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the regulated release of a gonadotropin.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endocrine process","termid":"GO:0044060"},{"relation_name":"is_a","term_name":"regulation of hormone secretion","termid":"GO:0046883"},{"relation_name":"regulates","term_name":"gonadotropin secretion","termid":"GO:0032274"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of gonadotropin secretion","synonyms":[{"name":"regulation of gonadotrophin secretion","type":"exact"}],"termid":"GO:0032276"}


id: PBO:0029131
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_DNA_recombination","termid":"PBO:0029131"}


id: PBO:0032713
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_error-prone_translesion_synthesis","termid":"PBO:0032713"}


id: PBO:0035839
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_prospore_membrane_formation","termid":"PBO:0035839"}


id: PBO:0040958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 interacting protein 3 pseudogene 29","termid":"PBO:0040958"}


id: PBO:0005688
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Inner MTOC Attachment site","termid":"PBO:0005688"}


id: GO:1990770
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry in the intestine between the stomach and the large intestine.","definition_xrefs":["PMID:11991626"],"direct_ancestors":[{"relation_name":"is_a","term_name":"smooth muscle contraction","termid":"GO:0006939"},{"relation_name":"part_of","term_name":"intestine smooth muscle contraction","termid":"GO:0014827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"small intestine smooth muscle contraction","termid":"GO:1990770"}


id: GO:0070714
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of an RNA molecule by insertion of an guanosine-uridine insertion dinucleotide.","definition_xrefs":["GOC:mah","GOC:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA dinucleotide insertion","termid":"GO:0070707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"RNA guanosine-uridine insertion","synonyms":[{"name":"RNA GU insertion","type":"exact"}],"termid":"GO:0070714"}


id: FYPO:0002155
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which chromosome structure is normal (i.e. indistinguishable from wild type) at the telomeric regions. Telomere structure refers to the position, shape, arrangement and connectivity of DNA and associated proteins in the telomeric region.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal telomere morphology during vegetative growth","termid":"FYPO:0006513"},{"relation_name":"is_a","term_name":"normal telomere structure","termid":"FYPO:0006514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal telomere structure during vegetative growth","synonyms":[{"name":"normal chromosome structure at telomere during vegetative growth","type":"exact"},{"name":"normal chromosome structure at telomeric region during vegetative growth","type":"exact"},{"name":"normal telomere structure during mitotic cell cycle","type":"related"},{"name":"normal telomeric region structure during vegetative growth","type":"exact"}],"termid":"FYPO:0002155"}


id: FYPO:0001324
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell is lower than normal when the cell is in the vegetative growth phase of the life cycle. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level","termid":"FYPO:0000835"},{"relation_name":"is_a","term_name":"altered protein level during vegetative growth","termid":"FYPO:0001325"},{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0006551"],"is_obsolete":false,"name":"decreased protein level during vegetative growth","synonyms":[{"name":"decreased protein accumulation during vegetative growth","type":"related"},{"name":"decreased protein level during mitotic cell cycle","type":"related"},{"name":"reduced protein level during vegetative growth","type":"exact"}],"termid":"FYPO:0001324"}


id: SO:0000094
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene from cyanelle sequence.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"cyanelle_sequence","termid":"SO:0000746"},{"relation_name":"is_a","term_name":"plastid_gene","termid":"SO:0000090"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyanelle_gene","synonyms":[{"name":"cyanelle gene","type":"exact"}],"termid":"SO:0000094"}


id: PBO:0051218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 7-4-1","termid":"PBO:0051218"}


id: PBO:0053710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 919","termid":"PBO:0053710"}


id: GO:0097125
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex consisting of cyclin B1 and cyclin-dependent kinase 1 (CDK1). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner.","definition_xrefs":["GOC:so","PMID:15935619"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent protein kinase holoenzyme complex","termid":"GO:0000307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"cyclin B1-CDK1 complex","termid":"GO:0097125"}


id: PBO:0073332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family A member 7 pseudogene 1","termid":"PBO:0073332"}


id: GO:0015107
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of chlorate, ClO3-, from one side of a membrane to the other.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic anion transmembrane transporter activity","termid":"GO:0015103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"chlorate transmembrane transporter activity","termid":"GO:0015107"}


id: PBO:0077034
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THO complex subunit 2","termid":"PBO:0077034"}


id: GO:0072305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces the occurrence or rate of mesenchymal stem cell death by apoptotic process that contributes to the shaping of the nephron in the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of mesenchymal cell apoptotic process involved in nephron morphogenesis","termid":"GO:0072040"},{"relation_name":"is_a","term_name":"regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis","termid":"GO:0072304"},{"relation_name":"is_a","term_name":"negative regulation of mesenchymal cell apoptotic process involved in metanephros development","termid":"GO:1900212"},{"relation_name":"negatively_regulates","term_name":"mesenchymal stem cell maintenance involved in metanephric nephron morphogenesis","termid":"GO:0072309"},{"relation_name":"negatively_regulates","term_name":"mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis","termid":"GO:1901147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis","synonyms":[{"name":"negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis","type":"narrow"},{"name":"negative regulation of mesenchymal stem cell apoptotic process involved in metanephric nephron morphogenesis","type":"exact"}],"termid":"GO:0072305"}


id: PATO:0001943
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A purple color which has low saturation and low brightness.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purple","termid":"PATO:0000951"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lilac","termid":"PATO:0001943"}


id: PBO:0002040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L5 (predicted)","termid":"PBO:0002040"}


id: GO:0075513
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any caveolin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins when material is taken up into plasma membrane caveolae - specialized lipid rafts that form 50-70 nm flask-shaped invaginations of the plasma membrane - which then pinch off to form endocytic caveolar carriers containing the virus.","definition_xrefs":["GOC:bf","GOC:jl","VZ:976"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor-mediated endocytosis of virus by host cell","termid":"GO:0019065"},{"relation_name":"is_a","term_name":"caveolin-mediated endocytosis","termid":"GO:0072584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"caveolin-mediated endocytosis of virus by host cell","synonyms":[{"name":"viral entry into host cell via caveolae-mediated endocytosis","type":"exact"},{"name":"viral entry into host cell via caveolin-mediated endocytosis","type":"related"},{"name":"viral penetration via caveolae-mediated endocytosis followed by endosome disruption","type":"exact"}],"termid":"GO:0075513"}


id: PBO:0087799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Synthase subunit of trehalose-6-P synthase/phosphatase complex; synthesizes the storage carbohydrate trehalose, which is critically important for survival of long-term desiccation; also found in a monomeric form; expression is induced by the stress response and repressed by the Ras-cAMP pathway; protein abundance increases in response to DNA replication stress and in response to prolonged exposure to boric acid","termid":"PBO:0087799"}


id: GO:2001000
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of xylan catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellodextrin metabolic process","termid":"GO:2000924"},{"relation_name":"is_a","term_name":"regulation of hemicellulose catabolic process","termid":"GO:2000988"},{"relation_name":"regulates","term_name":"xylan catabolic process","termid":"GO:0045493"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"regulation of xylan catabolic process","synonyms":[{"name":"regulation of xylan breakdown","type":"exact"},{"name":"regulation of xylan catabolism","type":"exact"},{"name":"regulation of xylan degradation","type":"exact"}],"termid":"GO:2001000"}


id: PBO:0003905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEL1 repeat protein Nif1","termid":"PBO:0003905"}


id: PBO:0081198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger imprinted 3","termid":"PBO:0081198"}


id: GO:0009642
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light intensity stimulus.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to light stimulus","termid":"GO:0009416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to light intensity","termid":"GO:0009642"}


id: GO:0003704
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Functions to enable the transcription of specific, or specific sets, of genes by RNA polymerase II.","definition_xrefs":["GOC:ma"],"gene_count":0,"genotype_count":0,"name":"obsolete specific RNA polymerase II transcription factor activity (obsolete GO:0003704)","synonyms":[{"name":"specific RNA polymerase II transcription factor activity","type":"exact"}],"termid":"GO:0003704"}


id: PBO:0060537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetyltransferase domain containing 1","termid":"PBO:0060537"}


id: GO:0160075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a non-canonical inflammasome complex.","definition_xrefs":["PMID:27291964"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"non-canonical inflammasome complex assembly","termid":"GO:0160075"}


id: PBO:0068864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 104, pseudogene","termid":"PBO:0068864"}


id: PR:P87294
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sub1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87294"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II transcriptional coactivator (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC16A10.02","synonyms":[{"name":"Spom972h-sub1","type":"exact"}],"termid":"PR:P87294"}


id: PBO:0083685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Enolase, a phosphopyruvate hydratase; catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate; complements the growth defect of an ENO1 ENO2 double mutant","termid":"PBO:0083685"}


id: PBO:0048374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRB2 associated regulator of MAPK1 subtype 2","termid":"PBO:0048374"}


id: PBO:0086631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; not an essential gene; YLR225C has a paralog, YDR222W, that arose from the whole genome duplication","termid":"PBO:0086631"}


id: GO:0150060
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by an extracellular amylin, or another ligand, combining with an amylin receptor 2 (AMY2), a G protein-coupled receptor complex, on the surface of the target cell. The AMY2 signaling pathway can also be initiated by adrenomedullin (AM/ADM).","definition_xrefs":["GOC:bc","PMID:22500019","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amylin receptor signaling pathway","termid":"GO:0097647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"amylin receptor 2 signaling pathway","synonyms":[{"name":"AMY2 signaling pathway","type":"exact"}],"termid":"GO:0150060"}


id: GO:0036203
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 10beta-hydroxytaxa-4(20),11-dien-5alpha-yl acetate + O2 + NADPH + H+ = 10beta,14beta-dihydroxytaxa-4(20),11-dien-5alpha-yl acetate + NADP+ + H2O.","definition_xrefs":["EC:1.14.13.146"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"taxoid 14-beta-hydroxylase activity","secondary_identifiers":["RHEA:31971","KEGG_REACTION:R09867"],"termid":"GO:0036203"}


id: PBO:0081310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 92","termid":"PBO:0081310"}


id: FYPO:0001268
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to centromere during vegetative growth","termid":"FYPO:0000449"},{"relation_name":"is_a","term_name":"abnormal protein localization to kinetochore","termid":"FYPO:0005209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein localization to kinetochore during vegetative growth","synonyms":[{"name":"abnormal protein localisation to kinetochore during vegetative growth","type":"exact"},{"name":"abnormal protein localization to kinetochore during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001268"}


id: FYPO:0006736
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which the proportion of cells in the population remains viable after entering stationary phase does not change in the presence of tschimganine. Normally, wild-type cell populations survive longer in the presence of tschimganine than in its absence.","definition_xrefs":["PMID:29900664","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population phenotype","termid":"FYPO:0000003"},{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"stationary phase viability unaffected by tschimganine","synonyms":[{"name":"chronological lifespan unaffected by tschimganine","type":"related"},{"name":"loss of chronological lifespan extension by tschimganine","type":"related"},{"name":"loss of stationary phase viability extension in presence of tschimganine","type":"exact"},{"name":"stationary phase viability unaffected by TMN","type":"exact"}],"termid":"FYPO:0006736"}


id: SO:0001317
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Queuosine is a modified 7-deazoguanosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"seven_deazaguanosine","termid":"SO:0001316"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"queuosine","secondary_identifiers":["http://en.wikipedia.org/wiki/Queuosine","RNAMOD:043"],"synonyms":[{"name":" Q","type":"exact"}],"termid":"SO:0001317"}


id: PBO:0066471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rieske (Fe-S) domain containing pseudogene 1","termid":"PBO:0066471"}


id: GO:0035637
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The transfer of information occurring at the level of a multicellular organism.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete multicellular organismal signaling (obsolete GO:0035637)","synonyms":[{"name":"multicellular organismal signalling","type":"exact"}],"termid":"GO:0035637"}


id: PBO:0002712
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.4.11.-","termid":"PBO:0002712"}


id: PATO:0000888
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"female fertility","termid":"PATO:0000277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"female fertile","termid":"PATO:0000888"}


id: PBO:0077422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 161A","termid":"PBO:0077422"}


id: PBO:0082732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the Rpd3L histone deacetylase complex; involved in transcriptional regulation of PHO5; affects termination of snoRNAs and cryptic unstable transcripts (CUTs); C-terminus shares significant sequence identity with the human candidate tumor suppressor p33-ING1 and its isoform ING3","termid":"PBO:0082732"}


id: FYPO:0001123
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a spore is longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal spore shape","termid":"FYPO:0002467"},{"relation_name":"is_a","term_name":"increased cell length","termid":"FYPO:0006633"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000005"],"is_obsolete":false,"name":"elongated spore","synonyms":[{"name":"long spores","type":"exact"}],"termid":"FYPO:0001123"}


id: PBO:0017639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-P ortholog Fta2","termid":"PBO:0017639"}


id: PBO:0053341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 210","termid":"PBO:0053341"}


id: PBO:0054928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2342","termid":"PBO:0054928"}


id: PR:000027545
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H2A that is a translation product of the yeast HTA2 gene or a 1:1 ortholog thereof.","definition_xrefs":["PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A.2","synonyms":[{"name":"H2A.2","type":"exact"},{"name":"H2A2","type":"related"},{"name":"HTA2","type":"exact"}],"termid":"PR:000027545"}


id: PBO:0086826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; YNL165W is not an essential gene","termid":"PBO:0086826"}


id: GO:0035509
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of myosin-light-chain-phosphatase activity.","definition_xrefs":["GOC:bf","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of phosphoprotein phosphatase activity","termid":"GO:0032515"},{"relation_name":"is_a","term_name":"regulation of myosin-light-chain-phosphatase activity","termid":"GO:0035507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of myosin-light-chain-phosphatase activity","termid":"GO:0035509"}


id: PBO:0086848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative redox protein containing a thioredoxin fold; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies","termid":"PBO:0086848"}


id: PBO:0042025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 83","termid":"PBO:0042025"}


id: GO:0098697
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Any ryanodine-sensitive calcium-release channel activity that is involved in regulation of postsynaptic cytosolic calcium ion concentration.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ryanodine-sensitive calcium-release channel activity","termid":"GO:0005219"},{"relation_name":"is_a","term_name":"calcium-induced calcium release activity involved in regulation of postsynaptic cytosolic calcium ion concentration","termid":"GO:1905058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"ryanodine-sensitive calcium-release channel activity involved in regulation of postsynaptic cytosolic calcium levels","termid":"GO:0098697"}


id: PBO:0000759
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene structure uopdated","termid":"PBO:0000759"}


id: PBO:0024480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PITH domain-containing protein","termid":"PBO:0024480"}


id: GO:0061880
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of mitochondria along microtubules in axons away from the cell body and towards the presynapse.","definition_xrefs":["PMID:24302729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organelle transport along microtubule","termid":"GO:1902513"},{"relation_name":"regulates","term_name":"anterograde axonal transport of mitochondrion","termid":"GO:0098957"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of anterograde axonal transport of mitochondrion","synonyms":[{"name":"regulation of anterograde axon transport of mitochondria","type":"exact"}],"termid":"GO:0061880"}


id: PBO:0074689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 68B","termid":"PBO:0074689"}


id: PBO:0089569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ctf18 RFC-like complex subunit Ctf8","termid":"PBO:0089569"}


id: GO:0098837
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A recycling endosome of the postsynapse. In postsynaptic terminals with dendritic spines, it is typically located at the base of a dendritic spine. It is involved in recycling of neurotransmitter receptors to the postsynaptic membrane. In some cases at least, this recycling is activated by postsynaptic signaling and so can play a role in long term potentiation.","definition_xrefs":["PMID:20820847"],"direct_ancestors":[{"relation_name":"is_a","term_name":"recycling endosome","termid":"GO:0055037"},{"relation_name":"is_a","term_name":"postsynaptic endosome","termid":"GO:0098845"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005768"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0031410","GO:0005768","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"postsynaptic recycling endosome","synonyms":[{"name":"postsynaptic endosomal recycling compartment","type":"broad"},{"name":"postsynaptic recycling outpost","type":"exact"}],"termid":"GO:0098837"}


id: GO:0015710
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of tellurite into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic anion transport","termid":"GO:0015698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"tellurite transport","termid":"GO:0015710"}


id: PBO:0084651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Minor isoform of pyruvate decarboxylase; decarboxylates pyruvate to acetaldehyde, involved in amino acid catabolism; transcription is glucose- and ethanol-dependent, and is strongly induced during sulfur limitation","termid":"PBO:0084651"}


id: PR:Q10094
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC11D3.15 gene.","definition_xrefs":["UniProtKB:Q10094","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C11D3.15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11D3.15","synonyms":[{"name":"Spom972h-SPAC11D3.15","type":"exact"}],"termid":"PR:Q10094"}


id: PBO:0081279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF45 antisense RNA 1","termid":"PBO:0081279"}


id: FYPO:0006463
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mRNA cleavage and polyadenylation specificity factor complex assembly is abnormal.","definition_xrefs":["PMID:27401558","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein complex assembly","termid":"FYPO:0000447"},{"relation_name":"is_a","term_name":"abnormal RNA processing","termid":"FYPO:0001553"},{"relation_name":"is_a","term_name":"abnormal protein complex organization during vegetative growth","termid":"FYPO:0007402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0006551","FYPO:0000294","FYPO:0005447"],"is_obsolete":false,"name":"abnormal mRNA cleavage and polyadenylation specificity factor complex assembly","synonyms":[{"name":"abnormal mRNA cleavage and polyadenylation specificity factor complex assembly during mitotic cell cycle","type":"related"},{"name":"abnormal mRNA cleavage and polyadenylation specificity factor complex assembly during vegetative growth","type":"exact"}],"termid":"FYPO:0006463"}


id: GO:0090358
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular metabolic process","termid":"GO:0031325"},{"relation_name":"is_a","term_name":"positive regulation of amino acid metabolic process","termid":"GO:0045764"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of tryptophan metabolic process","termid":"GO:0090357"},{"relation_name":"positively_regulates","term_name":"tryptophan metabolic process","termid":"GO:0006568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"positively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"positive regulation of tryptophan metabolic process","synonyms":[{"name":"positive regulation of tryptophan metabolism","type":"exact"}],"termid":"GO:0090358"}


id: PBO:0028346
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_CENP-A_containing_chromatin","termid":"PBO:0028346"}


id: GO:0140704
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to 3',2' cyclic GMP-AMP (cGAMP) nucleotide, a cyclic purine dinucleotide that consists of AMP and GMP units cyclized via 3',5' and 2',5' linkages.","definition_xrefs":["PMID:34261127"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"3',2'-cyclic GMP-AMP binding","synonyms":[{"name":"3',2' cyclic-GMP-AMP binding","type":"exact"},{"name":"3',2'-cGAMP binding","type":"exact"},{"name":"3',2'-cyclic GAMP binding","type":"exact"}],"termid":"GO:0140704"}


id: PBO:0031431
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_glycerol_dehydrogenase_activity","termid":"PBO:0031431"}


id: PBO:0087035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L17A; required for processing of 27SB pre-rRNA and formation of stable 66S assembly intermediates; copurifies with the Dam1 complex (aka DASH complex); homologous to mammalian ribosomal protein L17 and bacterial L22; RPL17A has a paralog, RPL17B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress","termid":"PBO:0087035"}


id: PBO:0073614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SID1 transmembrane family member 1","termid":"PBO:0073614"}


id: PBO:0074413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMIM14 divergent transcript","termid":"PBO:0074413"}


id: GO:0046273
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of lignans, any member of a class of plant metabolites related to lignins. Lignans are usually found as phenylpropanoid dimers in which the phenylpropanoid units are linked tail to tail and thus having a 2,3 dibenzylbutane skeleton, but higher oligomers can also exist.","definition_xrefs":["PMID:10074466","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lignan metabolic process","termid":"GO:0009806"},{"relation_name":"is_a","term_name":"phenylpropanoid catabolic process","termid":"GO:0046271"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"lignan catabolic process","synonyms":[{"name":"lignan breakdown","type":"exact"},{"name":"lignan catabolism","type":"exact"},{"name":"lignan degradation","type":"exact"}],"termid":"GO:0046273"}


id: PBO:0068288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease K","termid":"PBO:0068288"}


id: PBO:0063821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology like domain family B member 3","termid":"PBO:0063821"}


id: GO:0033887
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-deoxy-beta-D-gluc-4-enuronosyl-(1->3)-N-acetyl-D-galactosamine 4-sulfate + H2O = 4-deoxy-beta-D-gluc-4-enuronosyl-(1->3)-N-acetyl-D-galactosamine + H+ + sulfate.","definition_xrefs":["RHEA:11444","EC:3.1.6.9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfuric ester hydrolase activity","termid":"GO:0008484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016788"],"is_obsolete":false,"name":"chondro-4-sulfatase activity","secondary_identifiers":["KEGG_REACTION:R03517","MetaCyc:CHONDRO-4-SULFATASE-RXN"],"synonyms":[{"name":"4-deoxy-beta-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine-4-sulfate 4-sulfohydrolase activity","type":"related"}],"termid":"GO:0033887"}


id: SO:0001395
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A post translationally modified methionine amino acid feature.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified_amino_acid_feature","termid":"SO:0001385"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified_L_methionine","secondary_identifiers":["MOD:00913"],"synonyms":[{"name":"ModMet","type":"exact"},{"name":"modified L methionine","type":"exact"},{"name":"modified L-methionine","type":"exact"}],"termid":"SO:0001395"}


id: FYPO:0002043
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which premeiotic DNA replication is normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal DNA replication","termid":"FYPO:0001133"},{"relation_name":"is_a","term_name":"normal meiotic cell cycle process","termid":"FYPO:0007078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal premeiotic DNA replication","synonyms":[{"name":"abnormal premeiotic DNA synthesis","type":"related"},{"name":"normal meiotic DNA replication","type":"related"},{"name":"normal meiotic DNA synthesis","type":"related"}],"termid":"FYPO:0002043"}


id: PBO:0089901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial cytochrome C oxidase assembly protein Mss51","termid":"PBO:0089901"}


id: PBO:0049323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTF2A1 antisense RNA 1","termid":"PBO:0049323"}


id: PBO:0066901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 202","termid":"PBO:0066901"}


id: GO:0036383
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione + FMNH2 + O2 = 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione + FMN + H2O.","definition_xrefs":["GOC:rs","EC:1.14.14.12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase activity","secondary_identifiers":["KEGG_REACTION:R09819","MetaCyc:RXN-12717","RHEA:31731"],"termid":"GO:0036383"}


id: GO:0002305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a precursor cell type acquires the specialized features of a CD8-positive, gamma-delta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gamma-delta intraepithelial T cell differentiation","termid":"GO:0002304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CD8-positive, gamma-delta intraepithelial T cell differentiation","synonyms":[{"name":"CD8-positive, gamma-delta intraepithelial T cell development","type":"related"},{"name":"CD8-positive, gamma-delta intraepithelial T lymphocyte differentiation","type":"exact"},{"name":"CD8-positive, gamma-delta intraepithelial T-cell differentiation","type":"exact"},{"name":"CD8-positive, gamma-delta intraepithelial T-lymphocyte differentiation","type":"exact"}],"termid":"GO:0002305"}


id: PATO:0001345
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A S. pombe mating type determined by the mat1-Mc and mat1-Mi on the mat1 locus.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe mating type","termid":"PATO:0001343"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"h minus","synonyms":[{"name":"M","type":"exact"},{"name":"h -","type":"exact"}],"termid":"PATO:0001345"}


id: PATO:0000598
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000598 relative width value (obsolete PATO:0000598)","termid":"PATO:0000598"}


id: GO:0031631
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of synaptic vesicle fusion to the presynaptic membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of vesicle fusion","termid":"GO:0031339"},{"relation_name":"is_a","term_name":"regulation of synaptic vesicle fusion to presynaptic active zone membrane","termid":"GO:0031630"},{"relation_name":"is_a","term_name":"negative regulation of synaptic vesicle membrane organization","termid":"GO:1901633"},{"relation_name":"is_a","term_name":"negative regulation of synaptic vesicle exocytosis","termid":"GO:2000301"},{"relation_name":"negatively_regulates","term_name":"synaptic vesicle fusion to presynaptic active zone membrane","termid":"GO:0031629"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0023052","GO:0016192","GO:0006810","GO:0008150","GO:0061024"],"is_obsolete":false,"name":"negative regulation of synaptic vesicle fusion to presynaptic active zone membrane","synonyms":[{"name":"down regulation of synaptic vesicle fusion to presynaptic active zone membrane","type":"exact"},{"name":"down regulation of synaptic vesicle fusion to presynaptic membrane","type":"broad"},{"name":"down-regulation of synaptic vesicle fusion to presynaptic active zone membrane","type":"exact"},{"name":"down-regulation of synaptic vesicle fusion to presynaptic membrane","type":"broad"},{"name":"downregulation of synaptic vesicle fusion to presynaptic active zone membrane","type":"exact"},{"name":"downregulation of synaptic vesicle fusion to presynaptic membrane","type":"broad"},{"name":"inhibition of synaptic vesicle fusion to presynaptic membrane","type":"broad"},{"name":"negative regulation of synaptic vesicle fusion to pre-synaptic active zone membrane","type":"exact"},{"name":"negative regulation of synaptic vesicle fusion to pre-synaptic membrane","type":"broad"},{"name":"negative regulation of synaptic vesicle fusion to presynaptic membrane","type":"broad"}],"termid":"GO:0031631"}


id: GO:1902660
data:
  {"annotated_genes":["SJAG_00266","SJAG_00424","SJAG_04551","SJAG_00610","SJAG_02311","SJAG_02426","SJAG_01245","SJAG_02481"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85502,98164,98858],"is_not":false,"summary":null,"term":"GO:1902660"},{"annotations":[88132,88791,112396,103968,96463],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110034"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of glucose mediated signaling pathway.","definition_xrefs":["GOC:di","GOC:TermGenie","GO_REF:0000058","PMID:24277933"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of glucose mediated signaling pathway","termid":"GO:1902659"},{"relation_name":"negatively_regulates","term_name":"glucose mediated signaling pathway","termid":"GO:0010255"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_00424":null,"SJAG_00610":null,"SJAG_01245":null,"SJAG_02311":null,"SJAG_02426":null,"SJAG_02481":null,"SJAG_04551":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of glucose mediated signaling pathway","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of glucose mediated signaling pathway","type":"exact"},{"name":"down regulation of glucose mediated signalling","type":"exact"},{"name":"down-regulation of glucose mediated signaling pathway","type":"exact"},{"name":"down-regulation of glucose mediated signalling","type":"exact"},{"name":"downregulation of glucose mediated signaling pathway","type":"exact"},{"name":"downregulation of glucose mediated signalling","type":"exact"},{"name":"inhibition of glucose mediated signaling pathway","type":"narrow"},{"name":"inhibition of glucose mediated signalling","type":"narrow"},{"name":"negative regulation of glucose mediated signalling","type":"exact"}],"termid":"GO:1902660","terms_by_termid":{"GO:0110034":null,"GO:1902660":null}}


id: GO:1902897
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of postsynaptic density protein 95 clustering.","definition_xrefs":["GO_REF:0000058","GOC:als","GOC:TermGenie","PMID:10570482"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to membrane","termid":"GO:1905475"},{"relation_name":"is_a","term_name":"regulation of postsynaptic density organization","termid":"GO:1905874"},{"relation_name":"regulates","term_name":"postsynaptic density protein 95 clustering","termid":"GO:0097119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of postsynaptic density protein 95 clustering","synonyms":[{"name":"regulation of Dlg4 clustering","type":"exact"},{"name":"regulation of PSD-95 clustering","type":"exact"},{"name":"regulation of post-synaptic density protein 95 clustering","type":"exact"}],"termid":"GO:1902897"}


id: PBO:0064973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 29, pseudogene","termid":"PBO:0064973"}


id: PBO:0044573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DBF4 zinc finger pseudogene 3","termid":"PBO:0044573"}


id: PATO:0001585
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer by virtue of the bearer's disposition to transmit of an entity through a medium.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conductivity","termid":"PATO:0001585"}


id: PBO:0031061
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination","termid":"PBO:0031061"}


id: PATO:0001968
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A branched quality inhering in a bearer by virtue of the bearer's having two or more parallel primary branches originate beside each other and converge apically.","definition_xrefs":["Hickey:1988"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branched","termid":"PATO:0000402"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"parallelodromous","termid":"PATO:0001968"}


id: PBO:0081235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger MYND-type containing 19 pseudogene 1","termid":"PBO:0081235"}


id: GO:1990877
data:
  {"annotated_genes":["SJAG_04910","SJAG_02231"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[92140,103145],"is_not":false,"summary":null,"term":"GO:1990877"}]},"cv_name":"cellular_component","definition":"A heterodimeric complex that functions as a GTPase-Activating Protein (GAP) Complex for members of the Rag family of GTPases. In the budding yeast, this complex contains Lst4 and Lst7, while the orthologous mammalian complex contains follicular (FLCN) and either follicular interacting protein 1 (FNIP1) or FNIP2.","definition_xrefs":["GOC:rn","PMID:34805795","PMID:24095279","PMID:26387955"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GTPase activator complex","termid":"GO:1902773"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02231":null,"SJAG_04910":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"FNIP-folliculin RagC/D GAP","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"BFC complex","type":"exact"},{"name":"FLCN-FNIP1 complex","type":"exact"},{"name":"FLCN-FNIP2 complex","type":"exact"},{"name":"FNIP-Folliculin RagC/D GAP complex","type":"exact"},{"name":"Lst4-Lst7 complex","type":"exact"}],"termid":"GO:1990877","terms_by_termid":{"GO:1990877":null}}


id: PBO:0004203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ski complex subunit Rec14","termid":"PBO:0004203"}


id: FYPO:0001586
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell tip is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cell tip during vegetative growth","termid":"FYPO:0001584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"decreased protein localization to cell tip during vegetative growth","synonyms":[{"name":"decreased protein localisation to cell tip during vegetative growth","type":"exact"},{"name":"decreased protein localization to cell end during vegetative growth","type":"exact"},{"name":"decreased protein localization to cell tip during mitotic cell cycle","type":"related"},{"name":"reduced protein localization to cell tip during vegetative growth","type":"exact"}],"termid":"FYPO:0001586"}


id: PBO:0058088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4305","termid":"PBO:0058088"}


id: GO:0019516
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the conversion of lactate to other compounds, such as pyruvate, with concomitant loss of electrons.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete lactate oxidation (obsolete GO:0019516)","termid":"GO:0019516"}


id: GO:1901233
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of convergent extension involved in axis elongation.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental growth","termid":"GO:0048640"},{"relation_name":"is_a","term_name":"regulation of convergent extension involved in axis elongation","termid":"GO:1901232"},{"relation_name":"is_a","term_name":"negative regulation of morphogenesis of an epithelium","termid":"GO:1905331"},{"relation_name":"negatively_regulates","term_name":"convergent extension involved in axis elongation","termid":"GO:0060028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of convergent extension involved in axis elongation","synonyms":[{"name":"down regulation of convergent extension involved in axis elongation","type":"exact"},{"name":"down-regulation of convergent extension involved in axis elongation","type":"exact"},{"name":"downregulation of convergent extension involved in axis elongation","type":"exact"},{"name":"inhibition of convergent extension involved in axis elongation","type":"narrow"}],"termid":"GO:1901233"}


id: GO:0006554
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of lysine, 2,6-diaminohexanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysine metabolic process","termid":"GO:0006553"},{"relation_name":"is_a","term_name":"alpha-amino acid catabolic process","termid":"GO:1901606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"lysine catabolic process","synonyms":[{"name":"lysine breakdown","type":"exact"},{"name":"lysine catabolism","type":"exact"},{"name":"lysine degradation","type":"exact"}],"termid":"GO:0006554"}


id: FYPO:0008052
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in mitosis in which the dimethylation of lysine at position 4 of histone H3 occurs to a greater extent than normal.","direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K4 dimethylation during vegetative growth","termid":"FYPO:0005225"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0005447","FYPO:0002274","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased histone H3-K4 dimethylation during mitosis","termid":"FYPO:0008052"}


id: GO:0003394
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix that contributes to the process of retrograde extension of a dendrite.","definition_xrefs":["GOC:tb","GOC:ascb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell adhesion involved in retrograde extension","termid":"GO:0003392"},{"relation_name":"part_of","term_name":"dendrite development by retrograde extension","termid":"GO:0003390"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"cell adhesion involved in dendrite retrograde extension","termid":"GO:0003394"}


id: PR:Q9HDZ8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC589.06c gene.","definition_xrefs":["UniProtKB:Q9HDZ8","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C589.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC589.06c","synonyms":[{"name":"Spom972h-SPAC589.06c","type":"exact"}],"termid":"PR:Q9HDZ8"}


id: GO:1901402
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of tetrapyrrole metabolic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of metabolic process","termid":"GO:0009892"},{"relation_name":"is_a","term_name":"regulation of tetrapyrrole metabolic process","termid":"GO:1901401"},{"relation_name":"negatively_regulates","term_name":"tetrapyrrole metabolic process","termid":"GO:0033013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0033013"},{"rel_name":"regulates","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"negative regulation of tetrapyrrole metabolic process","synonyms":[{"name":"down regulation of tetrapyrrole metabolic process","type":"exact"},{"name":"down regulation of tetrapyrrole metabolism","type":"exact"},{"name":"down-regulation of tetrapyrrole metabolic process","type":"exact"},{"name":"down-regulation of tetrapyrrole metabolism","type":"exact"},{"name":"downregulation of tetrapyrrole metabolic process","type":"exact"},{"name":"downregulation of tetrapyrrole metabolism","type":"exact"},{"name":"inhibition of tetrapyrrole metabolic process","type":"narrow"},{"name":"inhibition of tetrapyrrole metabolism","type":"exact"},{"name":"negative regulation of tetrapyrrole metabolism","type":"exact"}],"termid":"GO:1901402"}


id: GO:0010879
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of cholesterol into cells that is part of their accumulation and maintenance.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid transport involved in lipid storage","termid":"GO:0010877"},{"relation_name":"is_a","term_name":"cholesterol transport","termid":"GO:0030301"},{"relation_name":"part_of","term_name":"cholesterol storage","termid":"GO:0010878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"cholesterol transport involved in cholesterol storage","termid":"GO:0010879"}


id: PBO:0003508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metaxin (predicted)","termid":"PBO:0003508"}


id: GO:0071387
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cortisol stimulus. Cortisol is the major natural glucocorticoid synthesized in the zona fasciculata of the adrenal cortex; it affects the metabolism of glucose, protein, and fats and has appreciable mineralocorticoid activity. It also regulates the immune system and affects many other functions.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cortisol","termid":"GO:0051414"},{"relation_name":"is_a","term_name":"cellular response to glucocorticoid stimulus","termid":"GO:0071385"},{"relation_name":"is_a","term_name":"cellular response to alcohol","termid":"GO:0097306"},{"relation_name":"is_a","term_name":"cellular response to ketone","termid":"GO:1901655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to cortisol stimulus","synonyms":[{"name":"cellular response to hydrocortisone stimulus","type":"exact"}],"termid":"GO:0071387"}


id: PBO:0070717
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L9 pseudogene 22","termid":"PBO:0070717"}


id: FYPO:0007860
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the spindle pole body (SPB) duplicates normally, and the SPBs separate, in a cell that does not form a mitotic spindle or undergo cytokinesis. The DNA and nucleus may go on to divide in the absence of a spindle, with each DNA mass associated with an SPB.","definition_xrefs":["PMID:20967237","PomBase:jh","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell cycle process","termid":"FYPO:0002734"},{"relation_name":"part_of","term_name":"nuclear division in absence of mitotic spindle","termid":"FYPO:0007859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000337","FYPO:0001320","FYPO:0000631","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"spindle pole body separation in absence of mitotic spindle","synonyms":[{"name":"SPB separation in absence of mitotic spindle","type":"exact"},{"name":"spindle pole body separation in absence of mitotic spindle during mitotic cell cycle","type":"related"},{"name":"spindle pole body separation in absence of mitotic spindle during vegetative growth","type":"exact"}],"termid":"FYPO:0007860"}


id: GO:0097180
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric protein complex that contains a serine protease inhibitor and a protease; formation of the complex inhibits serine protease activity.","definition_xrefs":["GOC:ans","PMID:6323392"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protease inhibitor complex","termid":"GO:0097179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"serine protease inhibitor complex","synonyms":[{"name":"serine-type endopeptidase inhibitor complex","type":"exact"},{"name":"serpin complex","type":"exact"}],"termid":"GO:0097180"}


id: PBO:0065715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PVR related immunoglobulin domain containing 2, pseudogene","termid":"PBO:0065715"}


id: GO:0045588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of gamma-delta T cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of T cell differentiation","termid":"GO:0045582"},{"relation_name":"is_a","term_name":"regulation of gamma-delta T cell differentiation","termid":"GO:0045586"},{"relation_name":"is_a","term_name":"positive regulation of gamma-delta T cell activation","termid":"GO:0046645"},{"relation_name":"positively_regulates","term_name":"gamma-delta T cell differentiation","termid":"GO:0042492"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"positively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"positive regulation of gamma-delta T cell differentiation","synonyms":[{"name":"activation of gamma-delta T cell differentiation","type":"narrow"},{"name":"positive regulation of gamma-delta T cell development","type":"related"},{"name":"positive regulation of gamma-delta T lymphocyte differentiation","type":"exact"},{"name":"positive regulation of gamma-delta T-cell differentiation","type":"exact"},{"name":"positive regulation of gamma-delta T-lymphocyte differentiation","type":"exact"},{"name":"stimulation of gamma-delta T cell differentiation","type":"narrow"},{"name":"up regulation of gamma-delta T cell differentiation","type":"exact"},{"name":"up-regulation of gamma-delta T cell differentiation","type":"exact"},{"name":"upregulation of gamma-delta T cell differentiation","type":"exact"}],"termid":"GO:0045588"}


id: PBO:0074557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA host gene 10","termid":"PBO:0074557"}


id: PBO:0089387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MS ion channel protein 2","termid":"PBO:0089387"}


id: FYPO:0005290
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the plasma membrane surrounding the cell division site is decreased.","definition_xrefs":["PomBase:mah","PMID:26132084"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to plasma membrane at cell division site during vegetative growth","termid":"FYPO:0005544"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to plasma membrane at cell division site during vegetative growth","synonyms":[{"name":"decreased protein localisation to plasma membrane at cell division site during vegetative growth","type":"exact"},{"name":"decreased protein localization to plasma membrane at cell division site during mitotic cell cycle","type":"related"},{"name":"reduced protein localization to plasma membrane at cell division site during vegetative growth","type":"exact"}],"termid":"FYPO:0005290"}


id: GO:0032975
data:
  {"annotated_genes":["SJAG_02029","SJAG_04725","SJAG_00877","SJAG_03256"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99846],"is_not":false,"summary":null,"term":"GO:0032975"},{"annotations":[98815,106021],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990591"},{"annotations":[90643],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034490"},{"annotations":[99847],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090518"},{"annotations":[99849],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090515"},{"annotations":[99850],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090513"},{"annotations":[98817,99851],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901482"},{"annotations":[99852,106023],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090517"},{"annotations":[99853],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090516"},{"annotations":[99854],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090514"}]},"cv_name":"biological_process","definition":"The directed movement of amino acids into the vacuole across the vacuolar membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane transport","termid":"GO:0003333"},{"relation_name":"is_a","term_name":"vacuolar transmembrane transport","termid":"GO:0034486"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00877":null,"SJAG_02029":null,"SJAG_03256":null,"SJAG_04725":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"amino acid transmembrane import into vacuole","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"vacuolar amino acid import","type":"exact"}],"termid":"GO:0032975","terms_by_termid":{"GO:0032975":null,"GO:0034490":null,"GO:0090513":null,"GO:0090514":null,"GO:0090515":null,"GO:0090516":null,"GO:0090517":null,"GO:0090518":null,"GO:1901482":null,"GO:1990591":null}}


id: PBO:0088299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF4646 family conserved fungal protein","termid":"PBO:0088299"}


id: PBO:0041042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRCA1/BRCA2-containing complex subunit 3","termid":"PBO:0041042"}


id: PBO:0113506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Truncated 5' end of YML002W; in many strains, YML002W is continuous with YML003W, and is predicted to encode a single protein of 1090 aa with a full-length VPS9 domain; in strains S288C, W303, and CEN.PK, a single thymine residue is deleted near the 3' end of YML003W at ChrXIII:264337, causing a frameshift and premature stop codon, truncating YML003W","termid":"PBO:0113506"}


id: PBO:0059501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded 7S DNA","termid":"PBO:0059501"}


id: GO:0030447
data:
  {"annotated_genes":["SJAG_00124","SJAG_04312"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[115415,115416],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030448"}]},"cv_name":"biological_process","definition":"The process in which a multicellular organism, a unicellular organism or a group of unicellular organisms grow in a threadlike, filamentous shape.","definition_xrefs":["PMID:11729141","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth","termid":"GO:0040007"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00124":null,"SJAG_04312":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"filamentous growth","references_by_uniquename":{"PMID:34427722":null},"termid":"GO:0030447","terms_by_termid":{"GO:0030448":null}}


id: PBO:0048029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fascin actin-bundling protein 1","termid":"PBO:0048029"}


id: GO:0072367
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of lipid transport by modulating the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:mah","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of lipid transport by regulation of transcription from RNA polymerase II promoter (obsolete GO:0072367)","synonyms":[{"name":"regulation of lipid transport by regulation of transcription from an RNA polymerase II promoter","type":"exact"}],"termid":"GO:0072367"}


id: GO:1990897
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A protein complex that phosphorylates serine 2 residues in the CTD domain of productively elongating large subunits of DNA-directed RNA polymerase II, holoenzyme. In S. cerevisiae this complex consists of CTK1/CTK2/CTK3, in S. pombe Lsk1/Lsc1/Lsg1. Human CTK1 homologs include CDK12/13.","definition_xrefs":["PMID:20952539","PMID:24879308"],"gene_count":0,"genotype_count":0,"name":"obsolete CTDK-1 complex (obsolete GO:1990897)","termid":"GO:1990897"}


id: PBO:0034421
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-regulates_morphogenesis_of","termid":"PBO:0034421"}


id: SO:0000395
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.","direct_ancestors":[{"relation_name":"is_a","term_name":"snRNA","termid":"SO:0000274"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U5_snRNA","secondary_identifiers":["http://en.wikipedia.org/wiki/U5_snRNA"],"synonyms":[{"name":"U5 small nuclear RNA","type":"exact"},{"name":"U5 snRNA","type":"exact"},{"name":"small nuclear RNA U5","type":"exact"},{"name":"snRNA U5","type":"exact"}],"termid":"SO:0000395"}


id: GO:0021550
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the medulla oblongata over time, from its formation to the mature structure. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate.","definition_xrefs":["GOC:dph","GOC:cls","GO_REF:0000021","ISBN:0838580343","GOC:jid","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"hindbrain development","termid":"GO:0030902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"medulla oblongata development","synonyms":[{"name":"medulla development","type":"related"},{"name":"myelencephalon development","type":"related"}],"termid":"GO:0021550"}


id: GO:0006104
data:
  {"annotated_genes":["SJAG_03813","SJAG_01524"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85980,110974],"is_not":false,"summary":null,"term":"GO:0006104"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving succinyl-CoA, a compound composed of the monovalent acyl group 3-carboxypropanoyl, derived from succinic acid by loss of one OH group, linked to coenzyme A.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyl-CoA metabolic process","termid":"GO:0006637"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01524":null,"SJAG_03813":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006790","GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"succinyl-CoA metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"succinyl-CoA metabolism","type":"exact"}],"termid":"GO:0006104","terms_by_termid":{"GO:0006104":null}}


id: PR:O43087
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- kms2 gene.","definition_xrefs":["UniProtKB:O43087","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyogamy meiotic segregation protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC947.12","synonyms":[{"name":"Spom972h-kms2","type":"exact"}],"termid":"PR:O43087"}


id: GO:0099637
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of neurotransmitter receptors.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein transport","termid":"GO:0015031"},{"relation_name":"is_a","term_name":"protein-containing complex localization","termid":"GO:0031503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"neurotransmitter receptor transport","termid":"GO:0099637"}


id: PBO:0089704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER fusion GTPase, atlastin Sey1","termid":"PBO:0089704"}


id: GO:0006410
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The cellular synthesis of DNA on a template of RNA.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete transcription, RNA-dependent (obsolete GO:0006410)","synonyms":[{"name":"transcription, RNA-dependent","type":"exact"}],"termid":"GO:0006410"}


id: PR:O13703
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A vacuolar protein sorting-associated protein VTA1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00899","PANTHER:PTHR12741:SF4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting-associated protein vts1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13F5.04c","secondary_identifiers":["UniProtKB:O13703"],"synonyms":[{"name":"Spom972h-VTA1","type":"exact"},{"name":"VPS20-associated protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13703"}


id: PR:O13930
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sec2 gene.","definition_xrefs":["UniProtKB:O13930","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rab guanine nucleotide exchange factor sec2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23C4.10","synonyms":[{"name":"GDP-GTP exchange factor sec2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-sec2","type":"exact"}],"termid":"PR:O13930"}


id: FYPO:0000565
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of cellular respiration is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular respiration","termid":"FYPO:0000078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular respiration","synonyms":[{"name":"increased cellular respiration during mitotic cell cycle","type":"related"},{"name":"increased cellular respiration during vegetative growth","type":"exact"},{"name":"increased respiration","type":"broad"},{"name":"increased respiratory metabolism","type":"exact"},{"name":"respiratory metabolism: increased","type":"related"}],"termid":"FYPO:0000565"}


id: GO:0047850
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: meso-2,6-diaminopimelate + H2O + NADP+ = L-2-amino-6-oxopimelate + H+ + NADPH + NH4.","definition_xrefs":["RHEA:13561","EC:1.4.1.16"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor","termid":"GO:0016639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"diaminopimelate dehydrogenase activity","secondary_identifiers":["MetaCyc:DIAMINOPIMELATE-DEHYDROGENASE-RXN","KEGG_REACTION:R02755"],"synonyms":[{"name":"meso-2,6-diaminoheptanedioate:NADP+ oxidoreductase (deaminating)","type":"related"},{"name":"meso-alpha,epsilon-diaminopimelate dehydrogenase activity","type":"related"},{"name":"meso-diaminopimelate D-dehydrogenase activity","type":"related"},{"name":"meso-diaminopimelate dehydrogenase activity","type":"related"}],"termid":"GO:0047850"}


id: PBO:0085908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; protein abundance increases in response to DNA replication stress","termid":"PBO:0085908"}


id: PBO:0065900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB42, member RAS oncogene family, pseudogene 1","termid":"PBO:0065900"}


id: PBO:0077535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 248","termid":"PBO:0077535"}


id: GO:0003101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which epinephrine-norepinephrine modulate the force with which blood passes through the circulatory system.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of systemic arterial blood pressure by hormone","termid":"GO:0001990"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of systemic arterial blood pressure by circulatory epinephrine-norepinephrine","synonyms":[{"name":"regulation of blood pressure by circulating adrenaline-noradrenaline","type":"related"}],"termid":"GO:0003101"}


id: PBO:0067833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 135","termid":"PBO:0067833"}


id: PBO:0075970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"StAR related lipid transfer domain containing 10","termid":"PBO:0075970"}


id: GO:0018245
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The glycosylation of protein via the O4' atom of peptidyl-tyrosine, O4'-glycosyl-L-tyrosine; the carbohydrate is glucose, the origin for glycogen.","definition_xrefs":["RESID:AA0157"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein O-linked glycosylation","termid":"GO:0006493"},{"relation_name":"is_a","term_name":"peptidyl-tyrosine modification","termid":"GO:0018212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006486"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006486","GO:0008150"],"is_obsolete":false,"name":"protein O-linked glycosylation via tyrosine","synonyms":[{"name":"protein amino acid O-linked glycosylation via tyrosine","type":"exact"}],"termid":"GO:0018245"}


id: PBO:0027058
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_wall_polysaccharide_level","termid":"PBO:0027058"}


id: PBO:0038848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAMTS16 divergent transcript","termid":"PBO:0038848"}


id: GO:1902386
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glycyrrhetinate.","definition_xrefs":["GOC:TermGenie","PMID:22128119"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentacyclic triterpenoid biosynthetic process","termid":"GO:0019745"},{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"},{"relation_name":"is_a","term_name":"organic hydroxy compound biosynthetic process","termid":"GO:1901617"},{"relation_name":"is_a","term_name":"glycyrrhetinate metabolic process","termid":"GO:1902384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"glycyrrhetinate biosynthetic process","synonyms":[{"name":"glycyrrhetinate anabolism","type":"exact"},{"name":"glycyrrhetinate biosynthesis","type":"exact"},{"name":"glycyrrhetinate formation","type":"exact"},{"name":"glycyrrhetinate synthesis","type":"exact"}],"termid":"GO:1902386"}


id: GO:0097644
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a member of the calcitonin family (e.g. adrenomedullin, adrenomedullin 2 (intermedin), amylin, calcitonin and calcitonin gene-related peptides (CGRPs)).","definition_xrefs":["GOC:bhm","PMID:12037140","PMID:18687416","InterPro:IPR021116","PMID:10871296"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide hormone binding","termid":"GO:0017046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"calcitonin family binding","termid":"GO:0097644"}


id: GO:0106018
data:
  {"annotated_genes":["SJAG_00063","SJAG_02289","SJAG_04545"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[83812,104305,107172],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043813"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol phosphate + phosphate.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol bisphosphate phosphatase activity","termid":"GO:0034593"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00063":null,"SJAG_02289":null,"SJAG_04545":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0016788","GO:0003674"],"is_obsolete":false,"name":"phosphatidylinositol-3,5-bisphosphate phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106018","terms_by_termid":{"GO:0043813":null}}


id: PR:O60146
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- can1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60146"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transporter C18H10.16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC18H10.16","synonyms":[{"name":"Spom972h-can1","type":"exact"}],"termid":"PR:O60146"}


id: PBO:0070247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 188 pseudogene","termid":"PBO:0070247"}


id: PBO:0042407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDC20 divergent transcript","termid":"PBO:0042407"}


id: FYPO:0002994
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin is increased during S phase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to chromatin during vegetative growth","termid":"FYPO:0003011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"increased protein localization to chromatin during mitotic S phase","synonyms":[{"name":"increased protein localisation to chromatin during mitotic S phase","type":"exact"},{"name":"increased protein localization to chromatin during mitotic S phase during vegetative growth","type":"exact"}],"termid":"FYPO:0002994"}


id: GO:0006007
data:
  {"annotated_genes":["SJAG_04334","SJAG_06621","SJAG_02369","SJAG_01310","SJAG_03903","SJAG_00461","SJAG_00027","SJAG_00839","SJAG_02009","SJAG_04192","SJAG_03660","SJAG_02107","SJAG_02796","SJAG_03828","SJAG_04495","SJAG_03373","SJAG_02945","SJAG_06622","SJAG_02135","SJAG_00605"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105389,105393,91060,105391,105390,104925,101820,104929,105387,94033,99399,105388,101819,101455,90575,94303,104923,105392,104927,101453,104928,104924,112364,99655,104926,100471,101454],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glucose, the aldohexose gluco-hexose.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucose metabolic process","termid":"GO:0006006"},{"relation_name":"is_a","term_name":"hexose catabolic process","termid":"GO:0019320"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00461":null,"SJAG_00605":null,"SJAG_00839":null,"SJAG_01310":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02369":null,"SJAG_02796":null,"SJAG_02945":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"glucose catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"glucose breakdown","type":"exact"},{"name":"glucose catabolism","type":"exact"},{"name":"glucose degradation","type":"exact"}],"termid":"GO:0006007","terms_by_termid":{"GO:0061621":null}}


id: PR:O14296
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A charged multivesicular body protein 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10476:SF1","PRO:DNx","OMA:SCHPO01849"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting-associated protein 24 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC9E9.14","secondary_identifiers":["UniProtKB:O14296"],"synonyms":[{"name":"Spom972h-CHMP3","type":"exact"}],"termid":"PR:O14296"}


id: GO:1902900
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a gut granule.","definition_xrefs":["GOC:TermGenie","PMID:17202409","GO_REF:0000079","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle organization","termid":"GO:0016050"},{"relation_name":"is_a","term_name":"organelle assembly","termid":"GO:0070925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"gut granule assembly","synonyms":[{"name":"gut granule biogenesis","type":"exact"},{"name":"gut granule formation","type":"exact"}],"termid":"GO:1902900"}


id: PR:Q9USZ1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An elongation factor G, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR23115:SF13","OMA:SCHPO02754","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongation factor G, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1306.01c","secondary_identifiers":["UniProtKB:Q9USZ1"],"synonyms":[{"name":"EF-Gmt (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-GFM1","type":"exact"},{"name":"elongation factor G 1, mitochondrial (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"elongation factor G1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"mEF-G 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USZ1"}


id: FYPO:0000241
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell phenotype observed in the vegetative growth phase of the life cycle in which any process that affects the physical integrity, replication, or segregation of genomic DNA is abnormal. Encompasses effects on DNA metabolism, chromosome organization, the spindle assembly checkpoint, and any DNA integrity checkpoint.","definition_xrefs":["PomBase:jh","PomBase:vw","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete genome stability defects (obsolete FYPO:0000241)","synonyms":[{"name":"genome stability defects during mitotic cell cycle","type":"related"},{"name":"genome stability defects during vegetative growth","type":"exact"}],"termid":"FYPO:0000241"}


id: PBO:0000199
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"previously annotated as dubious","termid":"PBO:0000199"}


id: PBO:0078427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gly (anticodon GCC) 4-1","termid":"PBO:0078427"}


id: PBO:0028523
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_acetylation","termid":"PBO:0028523"}


id: PBO:0077807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOX high mobility group box family member 4 pseudogene 1","termid":"PBO:0077807"}


id: GO:0061926
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the formation of radial glial cell scaffolds.","definition_xrefs":["PMID:22076441"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell morphogenesis","termid":"GO:0010770"},{"relation_name":"is_a","term_name":"regulation of formation of radial glial scaffolds","termid":"GO:0061924"},{"relation_name":"positively_regulates","term_name":"formation of radial glial scaffolds","termid":"GO:0021943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of formation of radial glial scaffolds","synonyms":[{"name":"positive regulation of Bergmann fiber biosynthesis","type":"related"},{"name":"positive regulation of Bergmann fiber formation","type":"related"},{"name":"positive regulation of radial glial scaffold formation","type":"exact"}],"termid":"GO:0061926"}


id: PR:Q09886
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug42 gene.","definition_xrefs":["UniProtKB:Q09886","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 42 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC584.12","synonyms":[{"name":"Spom972h-mug42","type":"exact"}],"termid":"PR:Q09886"}


id: FYPO:0004804
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which actin fusion focus assembly does not occur. An actin fusion focus normally forms during mating at the site where the two cells will fuse.","definition_xrefs":["PomBase:mah","PMID:25825517"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"},{"relation_name":"is_a","term_name":"abnormal actin fusion focus assembly","termid":"FYPO:0006108"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000301"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000301","FYPO:0004803","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished actin fusion focus assembly","synonyms":[{"name":"abolished actin fusion focus formation","type":"exact"},{"name":"actin fusion focus assembly abolished","type":"exact"}],"termid":"FYPO:0004804"}


id: GO:0141035
data:
  {"annotated_genes":["SJAG_04883"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105916],"is_not":false,"summary":null,"term":"GO:0141035"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 1,2-diacyl-sn-glycerol + CTP = a 1,2-diacyl-sn-glycero-3-phosphate + CDP + H+.","definition_xrefs":["RHEA:25948"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid kinase activity","termid":"GO:0001727"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04883":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016301","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"CTP-dependent diacylglycerol kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN-12959","KEGG_REACTION:R09944","EC:2.7.1.174"],"synonyms":[{"name":"DAG kinase activity","type":"broad"},{"name":"diacylglycerol kinase (CTP dependent)","type":"broad"},{"name":"diacylglycerol kinase activity","type":"broad"},{"name":"diacylglycerol kinase activity (CTP)","type":"exact"}],"termid":"GO:0141035","terms_by_termid":{"GO:0141035":null}}


id: PBO:0089303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein, Hsp70 family, Ssb2-like","termid":"PBO:0089303"}


id: GO:0021821
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that results in the release of migrating cells from their interaction with radial glial cells as a component of the process of cerebral cortex glial-mediated radial cell migration.","definition_xrefs":["GOC:dph","GOC:jid","GO_REF:0000021","PMID:12626695","GOC:dgh","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell-cell adhesion","termid":"GO:0022408"},{"relation_name":"part_of","term_name":"layer formation in cerebral cortex","termid":"GO:0021819"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"negative regulation of cell-glial cell adhesion involved in cerebral cortex lamination","synonyms":[{"name":"down regulation of cell-glial cell adhesion involved in cerebral cortex lamination","type":"exact"},{"name":"down-regulation of cell-glial cell adhesion involved in cerebral cortex lamination","type":"exact"},{"name":"downregulation of cell-glial cell adhesion involved in cerebral cortex lamination","type":"exact"},{"name":"inhibition of cell-glial cell adhesion involved in cerebral cortex lamination","type":"narrow"}],"termid":"GO:0021821"}


id: FYPO:0005450
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing okadaic acid.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002058","FYPO:0002060","FYPO:0000257","FYPO:0000139","FYPO:0002057"],"is_obsolete":false,"name":"normal growth on okadaic acid","synonyms":[{"name":"normal cell population growth in presence of okadaic acid","type":"exact"},{"name":"normal cell population growth on okadaic acid","type":"exact"},{"name":"normal cellular response to okadaic acid","type":"related"},{"name":"normal vegetative cell population growth on okadaic acid","type":"exact"}],"termid":"FYPO:0005450"}


id: PBO:0072762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S100 calcium binding protein A13","termid":"PBO:0072762"}


id: GO:0120318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The use of external chemical cues called pheromones to send social and sexual information between members of the same species, leading to specific behavioral responses. Pheromones may be detected by two olfactory sensory circuits, the main olfactory pathway and the vomeronasal system.","definition_xrefs":["PMID:17935991","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"behavior","termid":"GO:0007610"},{"relation_name":"is_a","term_name":"biological process involved in intraspecies interaction between organisms","termid":"GO:0051703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"olfactory sociosexual communication","termid":"GO:0120318"}


id: GO:0008672
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-dehydro-3-deoxy-D-glucarate = pyruvate + tartronate semialdehyde.","definition_xrefs":["EC:4.1.2.20"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"2-dehydro-3-deoxyglucarate aldolase activity","secondary_identifiers":["MetaCyc:4.1.2.20-RXN","RHEA:10268"],"synonyms":[{"name":"2-dehydro-3-deoxy-D-glucarate tartronate-semialdehyde-lyase (pyruvate-forming)","type":"related"},{"name":"2-dehydro-3-deoxy-D-glucarate tartronate-semialdehyde-lyase activity","type":"related"},{"name":"2-keto-3-deoxyglucarate aldolase activity","type":"related"},{"name":"alpha-keto-beta-deoxy-D-glucarate aldolase activity","type":"related"}],"termid":"GO:0008672"}


id: GO:0045807
data:
  {"annotated_genes":["SJAG_00845"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99714],"is_not":false,"summary":null,"term":"GO:0045807"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of endocytosis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endocytosis","termid":"GO:0030100"},{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"positively_regulates","term_name":"endocytosis","termid":"GO:0006897"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00845":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"positive regulation of endocytosis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of endocytosis","type":"narrow"},{"name":"stimulation of endocytosis","type":"narrow"},{"name":"up regulation of endocytosis","type":"exact"},{"name":"up-regulation of endocytosis","type":"exact"},{"name":"upregulation of endocytosis","type":"exact"}],"termid":"GO:0045807","terms_by_termid":{"GO:0045807":null}}


id: PBO:0064176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group XC, pseudogene","termid":"PBO:0064176"}


id: PBO:0060864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIMA related kinase 7","termid":"PBO:0060864"}


id: PBO:0068968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 212, pseudogene","termid":"PBO:0068968"}


id: GO:1903063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of reverse cholesterol transport.","definition_xrefs":["GOC:TermGenie","PMID:23931754","GOC:rl","GO_REF:0000058","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cholesterol transport","termid":"GO:0032375"},{"relation_name":"is_a","term_name":"regulation of reverse cholesterol transport","termid":"GO:1903062"},{"relation_name":"negatively_regulates","term_name":"reverse cholesterol transport","termid":"GO:0043691"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of reverse cholesterol transport","synonyms":[{"name":"down regulation of reverse cholesterol transport","type":"exact"},{"name":"down-regulation of reverse cholesterol transport","type":"exact"},{"name":"downregulation of reverse cholesterol transport","type":"exact"},{"name":"inhibition of reverse cholesterol transport","type":"narrow"}],"termid":"GO:1903063"}


id: GO:0001895
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A tissue homeostatic process involved in the maintenance of an internal equilibrium within the retina of the eye, including control of cellular proliferation and death and control of metabolic function.","definition_xrefs":["PMID:15365178","PMID:15365173","GOC:add","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue homeostasis","termid":"GO:0001894"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"retina homeostasis","termid":"GO:0001895"}


id: MOD:01743
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"The protein modification reporter fragment produced by an Proteome Sciences TMT6plex-128 reagent acylated residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"TMT6plex-128 reporter+balance reagent acylated residue","termid":"MOD:01736"},{"relation_name":"derives_from","term_name":"cysTMT6plex-128 reporter+balance reagent cysteine disulfide","termid":"MOD:01825"},{"relation_name":"is_a","term_name":"TMT6plex reporter fragment","termid":"MOD:01716"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMT6plex-128 reporter fragment","synonyms":[{"name":"2,6-dimethyl-1-methylidenepiperidinium","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"},{"name":"cysTMT6plex-128 reporter fragment","type":"exact"}],"termid":"MOD:01743"}


id: GO:0140866
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by interleukin-20 binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:34755534"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"interleukin-20-mediated signaling pathway","synonyms":[{"name":"IL-20-mediated signaling pathway","type":"exact"},{"name":"interleukin-20-mediated signalling pathway","type":"exact"}],"termid":"GO:0140866"}


id: FYPO:0001404
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A colony morphology phenotype in which the outline of a colony growing on a solid surface is not symmetrical.","definition_xrefs":["PomBase:mah","PomBase:mp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal colony morphology","termid":"FYPO:0000150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"irregular colony morphology","synonyms":[{"name":"wavy-edged colony","type":"related"}],"termid":"FYPO:0001404"}


id: PR:O94587
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mitochondrial inner membrane protein COX18 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12428:SF3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inner membrane protein cox18 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1442.15c","secondary_identifiers":["UniProtKB:O94587"],"synonyms":[{"name":"SPCC1442.15c","type":"related"},{"name":"Sp3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-COX18","type":"exact"},{"name":"cox18sp+ (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"oxa1-3","type":"related"},{"name":"oxa103","type":"related"}],"termid":"PR:O94587"}


