# terms

id: PBO:0083343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps the verified gene CMP2/YML057W","termid":"PBO:0083343"}


id: PBO:0066446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"REV3L intronic transcript 1","termid":"PBO:0066446"}


id: GO:2000091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of mesonephric glomerular mesangial cell proliferation.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of glomerular mesangial cell proliferation","termid":"GO:0072125"},{"relation_name":"is_a","term_name":"regulation of mesonephric glomerular mesangial cell proliferation","termid":"GO:2000090"},{"relation_name":"is_a","term_name":"negative regulation of cell proliferation involved in mesonephros development","termid":"GO:2000607"},{"relation_name":"negatively_regulates","term_name":"mesonephric glomerular mesangial cell proliferation involved in mesonephros development","termid":"GO:0061269"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of mesonephric glomerular mesangial cell proliferation","termid":"GO:2000091"}


id: PBO:0041902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CBFA2/RUNX1 partner transcriptional co-repressor 2","termid":"PBO:0041902"}


id: PBO:0087073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L36A; N-terminally acetylated; binds to 5.8 S rRNA; homologous to mammalian ribosomal protein L36, no bacterial homolog; RPL36A has a paralog, RPL36B, that arose from the whole genome duplication","termid":"PBO:0087073"}


id: PBO:0084442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Maltase (alpha-D-glucosidase); inducible protein involved in maltose catabolism; encoded in the MAL3 complex locus; functional in genomic reference strain S288C; hydrolyzes the disaccharides maltose, turanose, maltotriose, and sucrose","termid":"PBO:0084442"}


id: PBO:0043639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COP9 signalosome subunit 2","termid":"PBO:0043639"}


id: PBO:0041020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BPI fold containing family B member 3","termid":"PBO:0041020"}


id: PBO:0004599
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine carboxyl methyltransferase Ppm1 (predicted)","termid":"PBO:0004599"}


id: PBO:0085523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S25, no bacterial homolog; RPS25A has a paralog, RPS25B, that arose from the whole genome duplication","termid":"PBO:0085523"}


id: PBO:0053410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 347","termid":"PBO:0053410"}


id: PBO:0079710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquilin 4","termid":"PBO:0079710"}


id: PBO:0085366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphoribosylpyrophosphate amidotransferase (PRPPAT); catalyzes first step of the 'de novo' purine nucleotide biosynthetic pathway; also known as amidophosphoribosyltransferase","termid":"PBO:0085366"}


id: PBO:0068942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 185, pseudogene","termid":"PBO:0068942"}


id: PBO:0027953
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_pyridoxamine_5'-phosphate_level","termid":"PBO:0027953"}


id: MOD:00113
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-geranylgeranyl-L-cysteine.","definition_xrefs":["DeltaMass:0","OMSSA:49","PubMed:1483450","PubMed:15609361","RESID:AA0104","Unimod:48#C"],"direct_ancestors":[{"relation_name":"is_a","term_name":"geranylgeranylated residue","termid":"MOD:00441"},{"relation_name":"is_a","term_name":"isoprenylated cysteine","termid":"MOD:01110"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-geranylgeranyl-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-([(2E,6E,10Z)-12-hydroxy-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]sulfanyl)propanoic acid","type":"exact"},{"name":"2-amino-3-(3,7,11,15-tetramethyl-2,6,10,14-hexadecatetraenylthio)propanoic acid","type":"exact"},{"name":"Geranyl-geranyl","type":"related"},{"name":"GeranylGeranyl","type":"related"},{"name":"LIPID S-geranylgeranyl cysteine","type":"exact"},{"name":"S-geranylgeranyl","type":"exact"},{"name":"S-geranylgeranyl-L-cysteine","type":"exact"},{"name":"SGergerCys","type":"exact"},{"name":"geranylgeranylc","type":"exact"}],"termid":"MOD:00113"}


id: FYPO:0003945
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of an RNA catabolic process is increased during a cellular response to hydrogen peroxide.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA catabolic process during vegetative growth","termid":"FYPO:0002138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000294"],"is_obsolete":false,"name":"increased RNA catabolic process during cellular response to hydrogen peroxide","synonyms":[{"name":"increased RNA breakdown during cellular response to hydrogen peroxide during vegetative growth","type":"exact"},{"name":"increased RNA catabolic process during cellular response to H2O2","type":"related"},{"name":"increased RNA catabolic process during cellular response to hydrogen peroxide during mitotic cell cycle","type":"related"},{"name":"increased RNA catabolism during cellular response to hydrogen peroxide","type":"exact"},{"name":"increased RNA degradation during cellular response to hydrogen peroxide","type":"exact"}],"termid":"FYPO:0003945"}


id: GO:0010417
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glucuronoxylan, a polymer containing a beta-1,4-linked D-xylose backbone substituted with glucuronic acid residues.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucuronoxylan metabolic process","termid":"GO:0010413"},{"relation_name":"is_a","term_name":"xylan biosynthetic process","termid":"GO:0045492"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975","GO:0071554"],"is_obsolete":false,"name":"glucuronoxylan biosynthetic process","synonyms":[{"name":"glucuronoxylan anabolism","type":"exact"},{"name":"glucuronoxylan biosynthesis","type":"exact"},{"name":"glucuronoxylan formation","type":"exact"},{"name":"glucuronoxylan synthesis","type":"exact"}],"termid":"GO:0010417"}


id: PBO:0048760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"germ cell-less 1, spermatogenesis associated","termid":"PBO:0048760"}


id: GO:0140656
data:
  {"annotated_genes":["SJAG_01076"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[112829],"is_not":false,"summary":null,"term":"GO:0140656"}]},"cv_name":"molecular_function","definition":"Binds to and increases the activity of an endodeoxyribonuclease.","definition_xrefs":["PMID:33836577"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclease activator activity","termid":"GO:0170053"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01076":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0140677"}],"interesting_parent_ids":["GO:0098772","GO:0140677","GO:0003674","GO:0030234"],"is_obsolete":false,"name":"endodeoxyribonuclease activator activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140656","terms_by_termid":{"GO:0140656":null}}


id: GO:2000216
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of proline metabolic process.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular metabolic process","termid":"GO:0031325"},{"relation_name":"is_a","term_name":"positive regulation of amino acid metabolic process","termid":"GO:0045764"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of proline metabolic process","termid":"GO:2000214"},{"relation_name":"positively_regulates","term_name":"proline metabolic process","termid":"GO:0006560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"positively_regulates","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"positive regulation of proline metabolic process","synonyms":[{"name":"positive regulation of proline metabolism","type":"exact"}],"termid":"GO:2000216"}


id: PBO:0078457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor gamma variable 9","termid":"PBO:0078457"}


id: PBO:0054382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1778","termid":"PBO:0054382"}


id: SO:0002201
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A repeat at the ends of and within the sequence for which it has functional significance other than long terminal repeat.","direct_ancestors":[{"relation_name":"is_a","term_name":"repeat_region","termid":"SO:0000657"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"terminal_repeat","synonyms":[{"name":"INSDC_feature:repeat_region","type":"broad"},{"name":"INSDC_qualifier:terminal","type":"exact"},{"name":"terminal repeat","type":"exact"}],"termid":"SO:0002201"}


id: GO:0043841
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (S)-lactate + GTP = 2-phospho-(S)-lactate + GDP.","definition_xrefs":["PMID:11535063"],"gene_count":0,"genotype_count":0,"name":"obsolete (S)-lactate 2-kinase activity (obsolete GO:0043841)","synonyms":[{"name":"lactate 2-kinase activity","type":"exact"}],"termid":"GO:0043841"}


id: PBO:0056300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule associated protein 1 light chain 3 gamma","termid":"PBO:0056300"}


id: MOD:00662
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-leucine residue to a methylated leucine, either N-methylleucine, or leucine methyl ester.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"},{"relation_name":"is_a","term_name":"modified L-leucine residue","termid":"MOD:00911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"methylated leucine","synonyms":[{"name":"MeLeu","type":"exact"}],"termid":"MOD:00662"}


id: FYPO:0002867
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of orotidine 5'-phosphate (orotidine monophosphate; OMP) measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular OMP level","synonyms":[{"name":"increased OMP accumulation","type":"related"},{"name":"increased cellular OMP level during mitotic cell cycle","type":"related"},{"name":"increased cellular OMP level during vegetative growth","type":"exact"},{"name":"increased cellular orotidine 5'-(dihydrogen phosphate) level","type":"exact"},{"name":"increased cellular orotidine monophosphate level","type":"exact"}],"termid":"FYPO:0002867"}


id: PBO:0076483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TARBP2 subunit of RISC loading complex","termid":"PBO:0076483"}


id: PBO:0090110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA(Ser) Um(44) 2'-O-methyltransferasetRNA Trm44","termid":"PBO:0090110"}


id: PBO:0035966
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K9_dimethylation_at_centromere_during_vegetative_growth","termid":"PBO:0035966"}


id: FYPO:0004376
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing at the silent mating-type cassettes is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin silencing at silent mating-type cassette","termid":"FYPO:0000156"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0006551","FYPO:0005447"],"is_obsolete":false,"name":"increased chromatin silencing at silent mating-type cassette","synonyms":[{"name":"increased chromatin silencing at mating-type region heterochromatin","type":"exact"},{"name":"increased chromatin silencing at silent mating-type cassette during mitotic cell cycle","type":"related"},{"name":"increased chromatin silencing at silent mating-type cassette during vegetative growth","type":"exact"}],"termid":"FYPO:0004376"}


id: PBO:0039355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amidohydrolase domain containing 1","termid":"PBO:0039355"}


id: FYPO:0005378
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which spindle pole body organization is normal (i.e. indistinguishable from wild type). Spindle pole body organization is a process that results in the assembly, arrangement of constituent parts, or disassembly of the spindle pole body (SPB).","definition_xrefs":["PomBase:mah","GO:0051300"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"},{"relation_name":"is_a","term_name":"normal cell cycle process","termid":"FYPO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal spindle pole body organization","synonyms":[{"name":"normal SPB organization","type":"exact"},{"name":"normal spindle pole body organisation","type":"exact"}],"termid":"FYPO:0005378"}


id: GO:1990049
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of neuronal dense core vesicles along axonal microtubules towards the cell body.","definition_xrefs":["PMID:23358451","PMID:24762653","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retrograde axonal transport","termid":"GO:0008090"},{"relation_name":"is_a","term_name":"vesicle transport along microtubule","termid":"GO:0047496"},{"relation_name":"is_a","term_name":"dense core granule cytoskeletal transport","termid":"GO:0099519"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"retrograde neuronal dense core vesicle transport","synonyms":[{"name":"retrograde dense core granule trafficking","type":"exact"},{"name":"retrograde dense core granule transport","type":"exact"}],"termid":"GO:1990049"}


id: GO:0047583
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-methoxy-2,4-dioxobutanoate + H2O = H+ + methanol + oxaloacetate.","definition_xrefs":["EC:3.1.1.44","RHEA:10564"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"4-methyloxaloacetate esterase activity","secondary_identifiers":["MetaCyc:4-METHYLOXALOACETATE-ESTERASE-RXN","KEGG_REACTION:R01144"],"synonyms":[{"name":"oxaloacetate-4-methyl-ester oxaloacetohydrolase activity","type":"related"}],"termid":"GO:0047583"}


id: PR:O14267
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC7D4.12c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14267"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized UPF0442 protein C7D4.12c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC7D4.12c","synonyms":[{"name":"Spom972h-SPAC7D4.12c","type":"exact"}],"termid":"PR:O14267"}


id: MOD:01087
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a 2,4,5-trichlorophenyl group for a hydrogen atom.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2,4,5-trichlorophenyl modified residue","termid":"MOD:01087"}


id: GO:0032827
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell differentiation as part of an immune response.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune effector process","termid":"GO:0002698"},{"relation_name":"is_a","term_name":"negative regulation of natural killer cell differentiation","termid":"GO:0032824"},{"relation_name":"is_a","term_name":"regulation of natural killer cell differentiation involved in immune response","termid":"GO:0032826"},{"relation_name":"is_a","term_name":"negative regulation of immune response","termid":"GO:0050777"},{"relation_name":"negatively_regulates","term_name":"natural killer cell differentiation involved in immune response","termid":"GO:0002325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of natural killer cell differentiation involved in immune response","synonyms":[{"name":"down regulation of natural killer cell differentiation during immune response","type":"related"},{"name":"down-regulation of natural killer cell differentiation during immune response","type":"related"},{"name":"downregulation of natural killer cell differentiation during immune response","type":"related"},{"name":"inhibition of natural killer cell differentiation during immune response","type":"narrow"},{"name":"negative regulation of NK cell differentiation during immune response","type":"related"},{"name":"negative regulation of natural killer cell development involved in immune response","type":"related"},{"name":"negative regulation of natural killer cell differentiation during immune response","type":"related"}],"termid":"GO:0032827"}


id: GO:0006084
data:
  {"annotated_genes":["SJAG_01187","SJAG_01402","SJAG_01139","SJAG_01474","SJAG_03715","SJAG_03290","SJAG_04865","SJAG_01989","SJAG_04499","SJAG_03731","SJAG_03064","SJAG_02380","SJAG_02769","SJAG_00982","SJAG_00866","SJAG_02741","SJAG_00947","SJAG_02158","SJAG_03349","SJAG_02006"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87486,94077,110350,111760],"is_not":false,"summary":null,"term":"GO:0006084"},{"annotations":[94412,89295],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006085"},{"annotations":[112102],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019427"},{"annotations":[113061],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990181"},{"annotations":[95054,104590,83505,110243,91050,114451],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006086"},{"annotations":[92633,110907,90495,84771],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019287"},{"annotations":[107376,111478],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:2001211"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyl-CoA metabolic process","termid":"GO:0006637"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00866":null,"SJAG_00947":null,"SJAG_00982":null,"SJAG_01139":null,"SJAG_01187":null,"SJAG_01402":null,"SJAG_01474":null,"SJAG_01989":null,"SJAG_02006":null,"SJAG_02158":null,"SJAG_02380":null,"SJAG_02741":null,"SJAG_02769":null,"SJAG_03064":null,"SJAG_03290":null,"SJAG_03349":null,"SJAG_03715":null,"SJAG_03731":null,"SJAG_04499":null,"SJAG_04865":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281","GO:0006790"],"is_obsolete":false,"name":"acetyl-CoA metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"acetyl coenzyme A metabolic process","type":"exact"},{"name":"acetyl coenzyme A metabolism","type":"exact"},{"name":"acetyl-CoA metabolism","type":"exact"}],"termid":"GO:0006084","terms_by_termid":{"GO:0006084":null,"GO:0006085":null,"GO:0006086":null,"GO:0019287":null,"GO:0019427":null,"GO:1990181":null,"GO:2001211":null}}


id: GO:0098948
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic specialization membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of postsynaptic specialization membrane (obsolete GO:0098948)","synonyms":[{"name":"intrinsic to postsynaptic specialization membrane","type":"narrow"}],"termid":"GO:0098948"}


id: PBO:0065937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rac family small GTPase 3","termid":"PBO:0065937"}


id: PATO:0001964
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled spirally downwards.","definition_xrefs":["ISBN:0881923214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"curled","termid":"PATO:0000405"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"circinate","termid":"PATO:0001964"}


id: PBO:0058428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4798","termid":"PBO:0058428"}


id: PBO:0052773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 65","termid":"PBO:0052773"}


id: FYPO:0007177
data:
  {"alleles_by_uniquename":{"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115334],"is_not":false,"summary":null,"term":"FYPO:0007177"}],"single_locus_phenotype":[{"annotations":[115323,115324,115331,115335],"is_not":false,"summary":null,"term":"FYPO:0007177"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the medial cortex of a cell is abolished during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to medial cortex during vegetative growth","termid":"FYPO:0002555"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01143":null,"SJAG_01665":null,"SJAG_02392":null,"SJAG_03596":null,"SJAG_03703":null,"SJAG_04498":null},"genotype_count":2,"genotypes_by_uniquename":{"mid1delta":{"display_name":"mid1delta","display_uniquename":"mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},"mid1delta__pom1delta":{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_02392","SJAG_01143"],"name":"abolished protein localization to medial cortex during mitotic interphase","references_by_uniquename":{"PMID:25866389":null},"single_locus_annotated_genes":["SJAG_01143"],"single_locus_genotype_uniquenames":["mid1delta"],"synonyms":[{"name":"abolished protein localisation to medial cortex during mitotic interphase","type":"exact"},{"name":"abolished protein localization to medial cortex during interphase during vegetative growth","type":"exact"},{"name":"abolished protein localization to medial cortex during interphase of mitotic cell cycle","type":"exact"},{"name":"abolished protein localization to medial ring during mitotic interphase","type":"exact"},{"name":"protein localization to medial cortex abolished during mitotic interphase","type":"exact"}],"termid":"FYPO:0007177","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0007177":null}}


id: PBO:0024473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sec14 cytosolic factor family, glycerophospholipid-transfer protein Spo20/Sec14","termid":"PBO:0024473"}


id: PBO:0058498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5692a-1","termid":"PBO:0058498"}


id: SO:0001683
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance.","direct_ancestors":[{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence_motif","secondary_identifiers":["http://en.wikipedia.org/wiki/Sequence_motif"],"synonyms":[{"name":"sequence motif","type":"related"}],"termid":"SO:0001683"}


id: GO:0005945
data:
  {"annotated_genes":["SJAG_00605"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[100467],"is_not":false,"summary":null,"term":"GO:0005945"}]},"cv_name":"cellular_component","definition":"A protein complex that possesses 6-phosphofructokinase activity; homodimeric, homooctameric, and allosteric homotetrameric forms are known.","definition_xrefs":["GOC:vw","ISBN:0198506732","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex, transferring phosphorus-containing groups","termid":"GO:0061695"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00605":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005829","GO:0005737"],"is_obsolete":false,"name":"6-phosphofructokinase complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0005945","terms_by_termid":{"GO:0005945":null}}


id: PR:O59770
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A proteasome subunit alpha type-3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11599:SF10","PRO:DNx","OMA:SCHPO04533"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome subunit alpha type-7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1795.04c","secondary_identifiers":["UniProtKB:O59770"],"synonyms":[{"name":"Spom972h-PSMA3","type":"exact"}],"termid":"PR:O59770"}


id: PBO:0056639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 14 pseudogene 1","termid":"PBO:0056639"}


id: PR:O13689
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC11E3.10 gene.","definition_xrefs":["UniProtKB:O13689","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C11E3.10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11E3.10","synonyms":[{"name":"Spom972h-SPAC11E3.10","type":"exact"}],"termid":"PR:O13689"}


id: GO:0061456
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of a mesenchymal stem cell from one site to another contributing to the shaping of the ureteric bud. A mesenchymal stem cell, or MSC, is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration involved in kidney development","termid":"GO:0035787"},{"relation_name":"part_of","term_name":"ureteric bud morphogenesis","termid":"GO:0060675"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal stem cell migration involved in uteric bud morphogenesis","termid":"GO:0061456"}


id: PBO:0057865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3176","termid":"PBO:0057865"}


id: GO:0140971
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of AIM2 inflammasome complex assembly.","definition_xrefs":["PMID:33467177"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein-containing complex assembly","termid":"GO:0043254"},{"relation_name":"part_of","term_name":"regulation of inflammasome-mediated signaling pathway","termid":"GO:0141085"},{"relation_name":"regulates","term_name":"AIM2 inflammasome complex assembly","termid":"GO:0140970"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"regulation of AIM2 inflammasome complex assembly","termid":"GO:0140971"}


id: GO:0003430
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The growth of a growth plate cartilage chondrocyte, where growth contributes to the progression of the chondrocyte over time from one condition to another.","definition_xrefs":["GOC:tb","GOC:dph","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chondrocyte hypertrophy","termid":"GO:0003415"},{"relation_name":"is_a","term_name":"developmental growth involved in morphogenesis","termid":"GO:0060560"},{"relation_name":"part_of","term_name":"growth plate cartilage chondrocyte development","termid":"GO:0003431"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"growth plate cartilage chondrocyte growth","synonyms":[{"name":"growth plate cartilage chondrocyte hypertrophy","type":"exact"}],"termid":"GO:0003430"}


id: GO:1900996
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of benzene.","definition_xrefs":["GOC:yaf","UniPathway:UPA00272","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benzene metabolic process","termid":"GO:0018910"},{"relation_name":"is_a","term_name":"hydrocarbon catabolic process","termid":"GO:0120253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"benzene catabolic process","synonyms":[{"name":"benzene breakdown","type":"exact"},{"name":"benzene catabolism","type":"exact"},{"name":"benzene degradation","type":"exact"}],"termid":"GO:1900996"}


id: PBO:0111806
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-Tim10/DDP type","termid":"PBO:0111806"}


id: FYPO:0003241
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitotic sister chromatid segregation fails to separate chromosomes into two equal masses. Unequal mitotic sister chromatid separation may be complete, with two distinct unequal DNA masses located at or near the ends of an elongated mitotic spindle, or incomplete.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"altered DNA level during vegetative growth","termid":"FYPO:0004321"},{"relation_name":"is_a","term_name":"abnormal mitotic sister chromatid segregation","termid":"FYPO:0000141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000631","FYPO:0000641","FYPO:0001985","FYPO:0000002","FYPO:0000337"],"is_obsolete":false,"name":"unequal mitotic sister chromatid segregation","synonyms":[{"name":"chromosome missegregation","type":"exact"},{"name":"mitotic chromosome nondisjunction","type":"exact"},{"name":"unequal mitotic chromosome segregation","type":"exact"},{"name":"unequal mitotic sister chromatid segregation during vegetative growth","type":"exact"},{"name":"unequal mitotic sister chromatid separation","type":"related"},{"name":"unequal sister chromatid segregation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0003241"}


id: GO:0034454
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a microtubule is maintained in a specific location in a cell by attachment to a centrosome.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule anchoring at microtubule organizing center","termid":"GO:0072393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0000226"}],"interesting_parent_ids":["GO:0000226","GO:0008150","GO:0007010"],"is_obsolete":false,"name":"microtubule anchoring at centrosome","termid":"GO:0034454"}


id: GO:0034158
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to the endolysosomal toll-like receptor 8.","definition_xrefs":["PMID:17328678","GOC:add","PMID:16551253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endolysosomal toll-like receptor signaling pathway","termid":"GO:0140894"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"toll-like receptor 8 signaling pathway","synonyms":[{"name":"TLR8 signaling pathway","type":"exact"},{"name":"toll-like receptor 8 signalling pathway","type":"exact"}],"termid":"GO:0034158"}


id: GO:0018906
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving methyl tert-butyl ether, 2-methoxy-2-methylpropane. Methyl tert-butyl ether is a synthetic chemical which is mixed with gasoline for use in reformulated gasoline. It was first introduced as an additive for unleaded gasoline in the 1980s. It is also used as a laboratory reagent and a pharmaceutical agent.","definition_xrefs":["UM-BBD_pathwayID:mtb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic metabolic process","termid":"GO:0006805"},{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"methyl tert-butyl ether metabolic process","synonyms":[{"name":"methyl tert-butyl ether metabolism","type":"exact"}],"termid":"GO:0018906"}


id: GO:0052523
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of programmed cell death in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by organism of symbiont programmed cell death (obsolete GO:0052523)","synonyms":[{"name":"enhancement or induction of symbiont programmed cell death","type":"exact"},{"name":"positive regulation by organism of symbiont programmed cell death","type":"exact"}],"termid":"GO:0052523"}


id: GO:0062121
data:
  {"annotated_genes":["SJAG_03048"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98412],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0062123"}]},"cv_name":"biological_process","definition":"The meiotic cell cycle chromosome organization process in which LinE complexes closely associate with chromatin during meiotic prophase to form mature linear elements.","definition_xrefs":["PMID:30640914"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome organization involved in meiotic cell cycle","termid":"GO:0070192"},{"relation_name":"part_of","term_name":"linear element assembly","termid":"GO:0030999"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03048":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0007049","GO:0008150","GO:0140013"],"is_obsolete":false,"name":"linear element maturation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"LinE chromosome loading","type":"exact"},{"name":"LinE focus formation","type":"exact"}],"termid":"GO:0062121","terms_by_termid":{"GO:0062123":null}}


id: PBO:0079728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBTF like 5 (pseudogene)","termid":"PBO:0079728"}


id: PBO:0002981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein Klf1","termid":"PBO:0002981"}


id: FYPO:0008247
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA derived from subtelomeric heterochromatin regions is lower than normal. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected.","definition_xrefs":["PomBase:pc","PMID:25356590"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"decreased subtelomeric heterochromatin RNA level","termid":"FYPO:0008247"}


id: GO:0043539
data:
  {"annotated_genes":["SJAG_00142","SJAG_02605","SJAG_00424","SJAG_03453","SJAG_04614","SJAG_03618","SJAG_00439","SJAG_03340","SJAG_03090","SJAG_01401","SJAG_00333","SJAG_02057","SJAG_04140","SJAG_01213","SJAG_04509","SJAG_04666","SJAG_03699","SJAG_00457","SJAG_03695","SJAG_04502","SJAG_03371"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[83983,85298,85508,86912,87187,87235,87236,88474,96008,101119,105266,106548,108978,113284,114362],"is_not":false,"summary":null,"term":"GO:0043539"},{"annotations":[107208,108089,113083,101009,97645,108977,104874,106918],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061575"}]},"cv_name":"molecular_function","definition":"Binds to and increases the activity of a protein serine/threonine kinase.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein kinase activator activity","termid":"GO:0030295"}],"gene_count":21,"genes_by_uniquename":{"SJAG_00142":null,"SJAG_00333":null,"SJAG_00424":null,"SJAG_00439":null,"SJAG_00457":null,"SJAG_01213":null,"SJAG_01401":null,"SJAG_02057":null,"SJAG_02605":null,"SJAG_03090":null,"SJAG_03340":null,"SJAG_03371":null,"SJAG_03453":null,"SJAG_03618":null,"SJAG_03695":null,"SJAG_03699":null,"SJAG_04140":null,"SJAG_04502":null,"SJAG_04509":null,"SJAG_04614":null,"SJAG_04666":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0140677","GO:0098772","GO:0030234"],"is_obsolete":false,"name":"protein serine/threonine kinase activator activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"protein ser/thr kinase activator activity","type":"exact"}],"termid":"GO:0043539","terms_by_termid":{"GO:0043539":null,"GO:0061575":null}}


id: RO:0002383
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x proper_tributary_of y iff x tributary_of y and x does not originate from y","direct_ancestors":[{"relation_name":"is_a","term_name":"tributary_of","termid":"RO:0002376"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proper_tributary_of","termid":"RO:0002383"}


id: GO:0031078
data:
  {"annotated_genes":["SJAG_00581","SJAG_03844","SJAG_04186","SJAG_04039"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100206,105468,108116],"is_not":false,"summary":null,"term":"GO:0031078"},{"annotations":[86118],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032041"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: histone H3 N6-acetyl-L-lysine (position 14) + H2O = histone H3 L-lysine (position 14) + acetate. This reaction represents the removal of an acetyl group from lysine at position 14 of the histone H3 protein.","definition_xrefs":["PMID:28450737"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3K deacetylase activity","termid":"GO:0141050"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00581":null,"SJAG_03844":null,"SJAG_04039":null,"SJAG_04186":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0033558"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0019213"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0019213","GO:0140096","GO:0003674","GO:0033558","GO:0016810","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"histone H3K14 deacetylase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"histone H3-K14 deacetylase activity","type":"exact"},{"name":"histone deacetylase activity (H3-K14 specific)","type":"exact"}],"termid":"GO:0031078","terms_by_termid":{"GO:0031078":null,"GO:0032041":null}}


id: GO:0044466
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: glutaryl-CoA + H2O = CoA + glutarate.","definition_xrefs":["GOC:pm","PMID:16141203"],"gene_count":0,"genotype_count":0,"name":"obsolete glutaryl-CoA hydrolase activity (obsolete GO:0044466)","synonyms":[{"name":"glutaryl-CoA thioesterase activity","type":"exact"}],"termid":"GO:0044466"}


id: GO:0030575
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of any of the extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins.","definition_xrefs":["GOC:jl","GOC:mah","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus organization","termid":"GO:0006997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nuclear body organization","synonyms":[{"name":"nuclear body organisation","type":"exact"},{"name":"nuclear body organization and biogenesis","type":"related"}],"termid":"GO:0030575"}


id: FYPO:0000225
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a spore assumes a snowman shape, having two connected parts, roughly spherical, of different sizes.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal spore shape","termid":"FYPO:0002467"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000005"],"is_obsolete":false,"name":"snowman-shaped spore","synonyms":[{"name":"cell morphology, snowman during sporulation","type":"related"},{"name":"snowman during sporulation","type":"related"}],"termid":"FYPO:0000225"}


id: PBO:0046312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enhancer lncRNA neighbor of NEAT1 and MALAT1","termid":"PBO:0046312"}


id: GO:0052712
data:
  {"annotated_genes":["SJAG_01219"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[104817],"is_not":false,"summary":null,"term":"GO:0052712"},{"annotations":[104818],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052714"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: inositol phosphosphingolipid + H2O = sphingolipid + phosphorylinositol.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipase C activity","termid":"GO:0004629"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01219":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824","GO:0016788"],"is_obsolete":false,"name":"inositol phosphosphingolipid phospholipase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0052712","terms_by_termid":{"GO:0052712":null,"GO:0052714":null}}


id: PBO:0047634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FLT3 interacting zinc finger 1","termid":"PBO:0047634"}


id: GO:0051180
data:
  {"annotated_genes":["SJAG_00835","SJAG_02779","SJAG_03652","SJAG_04673","SJAG_03503","SJAG_02152","SJAG_03808","SJAG_02780","SJAG_05175","SJAG_02962"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88104,70832],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905135"},{"annotations":[103563],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904947"},{"annotations":[99652],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990545"},{"annotations":[104288],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098717"},{"annotations":[86199,113473,114739,86198],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903090"},{"annotations":[114740,86201,86200,113474],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903091"},{"annotations":[114741,86202,113475,86203],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903092"},{"annotations":[96700],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140125"},{"annotations":[96701,86204,86205],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071934"}]},"cv_name":"biological_process","definition":"The directed movement of vitamins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A vitamin is one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport","termid":"GO:0006810"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00835":null,"SJAG_02152":null,"SJAG_02779":null,"SJAG_02780":null,"SJAG_02962":null,"SJAG_03503":null,"SJAG_03652":null,"SJAG_03808":null,"SJAG_04673":null,"SJAG_05175":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"vitamin transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"vitamin or cofactor transport","type":"broad"}],"termid":"GO:0051180","terms_by_termid":{"GO:0071934":null,"GO:0098717":null,"GO:0140125":null,"GO:1903090":null,"GO:1903091":null,"GO:1903092":null,"GO:1904947":null,"GO:1905135":null,"GO:1990545":null}}


id: PBO:0005027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal recognition particle subunit Srp72 (predicted)","termid":"PBO:0005027"}


id: GO:0070748
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an interleukin-35 receptor.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"interleukin-35 receptor binding","synonyms":[{"name":"IL-35","type":"narrow"},{"name":"interleukin-35 receptor ligand","type":"narrow"}],"termid":"GO:0070748"}


id: GO:1904491
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a ciliary transition zone.","definition_xrefs":["GOC:TermGenie","GO_REF:0000087","PMID:21422230","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to cilium","termid":"GO:0061512"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to ciliary transition zone","synonyms":[{"name":"protein localisation in ciliary transition zone","type":"exact"},{"name":"protein localisation to ciliary transition zone","type":"exact"},{"name":"protein localization in ciliary transition zone","type":"exact"}],"termid":"GO:1904491"}


id: PBO:0013018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"triacylglycerol lipase ptl3","termid":"PBO:0013018"}


id: PBO:0066054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAP2C antisense RNA 1","termid":"PBO:0066054"}


id: PBO:0067805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 107","termid":"PBO:0067805"}


id: GO:0010461
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a monoatomic ion by a channel that opens in response to a light stimulus.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic ion channel activity","termid":"GO:0005216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"light-activated monoatomic ion channel activity","termid":"GO:0010461"}


id: GO:0034258
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a nicotinamide riboside, which is a pyridine-3-carboxamide covalently bonded to a ribose sugar, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:se"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside transport","termid":"GO:0015858"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"nicotinamide riboside transport","termid":"GO:0034258"}


id: MOD:01342
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because redundant and identical to MOD:00530. Remap to MOD:00530.","definition_xrefs":["PubMed:12148805","Unimod:162"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:01342 selenium substitution for sulfur - site M (obsolete MOD:01342)","synonyms":[{"name":"Delta:S(-1)Se(1)","type":"related"},{"name":"Selenium replaces sulphur","type":"related"}],"termid":"MOD:01342"}


id: PBO:0067107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 149, pseudogene","termid":"PBO:0067107"}


id: MOD:01348
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to an O-hexosyl-L-threonine.","definition_xrefs":["PubMed:8597590","Unimod:41#T","PubMed:15279557"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycosyl-L-threonine","termid":"MOD:00005"},{"relation_name":"is_a","term_name":"hexosylated residue","termid":"MOD:00434"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"O-hexosylated threonine","synonyms":[{"name":"Hex","type":"related"},{"name":"Hexose","type":"related"}],"termid":"MOD:01348"}


id: PBO:0077281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 19","termid":"PBO:0077281"}


id: PBO:0058907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 12125","termid":"PBO:0058907"}


id: PR:O94653
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ribosome biogenesis protein BMS1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12858:SF2","OMA:SCHPO02379","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein bms1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC31E1.06","secondary_identifiers":["UniProtKB:O94653"],"synonyms":[{"name":"Spom972h-BMS1","type":"exact"}],"termid":"PR:O94653"}


id: GO:0046240
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of xylene, a mixture of three colorless, aromatic hydrocarbon liquids, ortho-, meta- and para-xylene.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete xylene biosynthetic process (obsolete GO:0046240)","synonyms":[{"name":"xylene anabolism","type":"exact"},{"name":"xylene biosynthesis","type":"exact"},{"name":"xylene biosynthetic process","type":"exact"},{"name":"xylene formation","type":"exact"},{"name":"xylene synthesis","type":"exact"}],"termid":"GO:0046240"}


id: PBO:0000230
data:
  {"annotation_feature_type":"gene","cv_name":"feature_relationshipprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"subject terminus","termid":"PBO:0000230"}


id: PATO:0001816
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A fatigability which is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"increased strength","termid":"PATO:0001778"},{"relation_name":"is_a","term_name":"fatigability","termid":"PATO:0001815"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased fatigability","synonyms":[{"name":"high fatigability","type":"exact"}],"termid":"PATO:0001816"}


id: PBO:0026964
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_vegetative_cell_population_growth_during_phosphate_starvation","termid":"PBO:0026964"}


id: GO:0015935
data:
  {"annotated_genes":["SJAG_04342","SJAG_04174","SJAG_02861","SJAG_02324","SJAG_00944","SJAG_02870","SJAG_04324","SJAG_04476","SJAG_04746","SJAG_00782","SJAG_04663","SJAG_01767","SJAG_02335","SJAG_01520","SJAG_04188","SJAG_02643","SJAG_02020","SJAG_01387","SJAG_01468","SJAG_02184","SJAG_03034","SJAG_00513","SJAG_04173","SJAG_01512","SJAG_02253","SJAG_04475","SJAG_05320","SJAG_00148","SJAG_01366","SJAG_04164","SJAG_01632","SJAG_04753","SJAG_02452","SJAG_02201","SJAG_02682","SJAG_01548","SJAG_00544","SJAG_04029","SJAG_03568","SJAG_02067","SJAG_00468","SJAG_04204","SJAG_04378","SJAG_04918","SJAG_02803","SJAG_02479","SJAG_02280","SJAG_01226","SJAG_04695","SJAG_03424","SJAG_03762","SJAG_04672","SJAG_00889","SJAG_00069","SJAG_04814","SJAG_03254","SJAG_03859","SJAG_04281","SJAG_04168","SJAG_01132","SJAG_04256","SJAG_02904","SJAG_04788","SJAG_02585","SJAG_02522","SJAG_02224","SJAG_01296","SJAG_00523","SJAG_00733","SJAG_00503","SJAG_01734","SJAG_02894","SJAG_01609","SJAG_03788","SJAG_00628","SJAG_04494","SJAG_00105","SJAG_02777","SJAG_03065","SJAG_02359","SJAG_02046","SJAG_02477","SJAG_00860","SJAG_03584","SJAG_02749","SJAG_00465","SJAG_04998","SJAG_03422","SJAG_03262","SJAG_00060","SJAG_02340","SJAG_01287","SJAG_03053"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[113416,101674,93447,100254,110552,100440,89052,89051,95814,90606,102700,84714,97743,87644,105982,102699,97744,102795,108338,92384,94366,86613,84750,95374,101397,101424,84997,92385,87055,101423,112307,94689,109431,84998,90952,107411,87056,83739,94663,97569,89713,109111,89715,95179,96063,73718,92472,96486,101673,101662,102796,107609,108337,83740,92473,109433,114695,84749,95813,101558,97570,89562,90799,96064,101661,102080,103910,109112,84715,94367,107610,109432,96799,89563,92607,99873,107611,110200,112306,110201,97745,99867,86614,91718,95674,106615,95180,94690,89714,99824,96800,103911,102050,107410,113410,95675,100255,87412,102051,110551,90607,90953,112445,91717,101396,93448,94662],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0022627"},{"annotations":[91389,98330,111587,112016,105355,106131,99092,114067,94252,99372,100016,106378,89694,94023,91967,104584,90540,103940,92670,85943,94024,90527,102386,104339,106669,88122,90240,99947,102025,85995,104084,108363],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005763"}]},"cv_name":"cellular_component","definition":"The smaller of the two subunits of a ribosome.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribosomal subunit","termid":"GO:0044391"}],"gene_count":93,"genes_by_uniquename":{"SJAG_00060":null,"SJAG_00069":null,"SJAG_00105":null,"SJAG_00148":null,"SJAG_00465":null,"SJAG_00468":null,"SJAG_00503":null,"SJAG_00513":null,"SJAG_00523":null,"SJAG_00544":null,"SJAG_00628":null,"SJAG_00733":null,"SJAG_00782":null,"SJAG_00860":null,"SJAG_00889":null,"SJAG_00944":null,"SJAG_01132":null,"SJAG_01226":null,"SJAG_01287":null,"SJAG_01296":null,"SJAG_01366":null,"SJAG_01387":null,"SJAG_01468":null,"SJAG_01512":null,"SJAG_01520":null,"SJAG_01548":null,"SJAG_01609":null,"SJAG_01632":null,"SJAG_01734":null,"SJAG_01767":null,"SJAG_02020":null,"SJAG_02046":null,"SJAG_02067":null,"SJAG_02184":null,"SJAG_02201":null,"SJAG_02224":null,"SJAG_02253":null,"SJAG_02280":null,"SJAG_02324":null,"SJAG_02335":null,"SJAG_02340":null,"SJAG_02359":null,"SJAG_02452":null,"SJAG_02477":null,"SJAG_02479":null,"SJAG_02522":null,"SJAG_02585":null,"SJAG_02643":null,"SJAG_02682":null,"SJAG_02749":null,"SJAG_02777":null,"SJAG_02803":null,"SJAG_02861":null,"SJAG_02870":null,"SJAG_02894":null,"SJAG_02904":null,"SJAG_03034":null,"SJAG_03053":null,"SJAG_03065":null,"SJAG_03254":null,"SJAG_03262":null,"SJAG_03422":null,"SJAG_03424":null,"SJAG_03568":null,"SJAG_03584":null,"SJAG_03762":null,"SJAG_03788":null,"SJAG_03859":null,"SJAG_04029":null,"SJAG_04164":null,"SJAG_04168":null,"SJAG_04173":null,"SJAG_04174":null,"SJAG_04188":null,"SJAG_04204":null,"SJAG_04256":null,"SJAG_04281":null,"SJAG_04324":null,"SJAG_04342":null,"SJAG_04378":null,"SJAG_04475":null,"SJAG_04476":null,"SJAG_04494":null,"SJAG_04663":null,"SJAG_04672":null,"SJAG_04695":null,"SJAG_04746":null,"SJAG_04753":null,"SJAG_04788":null,"SJAG_04814":null,"SJAG_04918":null,"SJAG_04998":null,"SJAG_05320":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"small ribosomal subunit","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"ribosomal small subunit","type":"exact"}],"termid":"GO:0015935","terms_by_termid":{"GO:0005763":null,"GO:0022627":null}}


id: PBO:0029483
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_microcolony,_swollen_curved_cells_(obsolete_FYPO:0002232)","termid":"PBO:0029483"}


id: PR:O43000
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- liz1 gene.","definition_xrefs":["UniProtKB:O43000","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pantothenate transporter liz1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2G2.01c","synonyms":[{"name":"Spom972h-liz1","type":"exact"}],"termid":"PR:O43000"}


id: GO:0071882
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A phospholipase C-activating receptor G protein-coupled receptor signaling pathway initiated by ligand binding to an adrenergic receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:mah","GOC:signaling","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipase C-activating G protein-coupled receptor signaling pathway","termid":"GO:0007200"},{"relation_name":"is_a","term_name":"adrenergic receptor signaling pathway","termid":"GO:0071875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"phospholipase C-activating adrenergic receptor signaling pathway","synonyms":[{"name":"activation of phospholipase C activity by adrenergic receptor signaling pathway","type":"related"},{"name":"activation of phospholipase C activity by adrenergic receptor signalling pathway","type":"related"},{"name":"adrenergic receptor, phospholipase C activating pathway","type":"related"}],"termid":"GO:0071882"}


id: PBO:0042095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 167","termid":"PBO:0042095"}


id: MOD:00287
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-proline residue to a (2S,3R,4S)-3,4-dihydroxyproline.","definition_xrefs":["PubMed:12686488","DeltaMass:0","RESID:AA0282","Unimod:425#P","ChEBI:141803"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dihydroxylated proline","termid":"MOD:00866"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(2S,3R,4S)-3,4-dihydroxyproline","synonyms":[{"name":"(2S,3R,4S)-3,4-dihydroxyproline","type":"exact"},{"name":"(2S,3R,4S)-3,4-dihydroxypyrrolidine-2-carboxylic acid","type":"exact"},{"name":"2,3-trans-3,4-cis-3,4-dihydroxy-L-proline","type":"exact"},{"name":"2-alpha-3-beta-4-beta-3,4-dihydroxyproline","type":"exact"},{"name":"3,4-Dihydroxylation (of Proline)","type":"exact"},{"name":"3,4-dihydroxylated L-proline","type":"exact"},{"name":"34Hy2Pro","type":"exact"},{"name":"Dioxidation","type":"related"},{"name":"MOD_RES (3R,4S)-3,4-dihydroxyproline","type":"exact"},{"name":"dihydroxy","type":"related"},{"name":"trans-2,3-cis-3,4-dihydroxy-L-proline","type":"exact"}],"termid":"MOD:00287"}


id: PR:O94708
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC1259.08 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94708"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1259.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1259.08","synonyms":[{"name":"Spom972h-SPCC1259.08","type":"exact"}],"termid":"PR:O94708"}


id: PBO:0051556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 10 receptor subunit alpha","termid":"PBO:0051556"}


id: PBO:0046776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exostosin like glycosyltransferase 2","termid":"PBO:0046776"}


id: PBO:0081759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 689","termid":"PBO:0081759"}


id: GO:0016596
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to thienylcyclohexylpiperidine.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cyclic compound binding","termid":"GO:0097159"},{"relation_name":"is_a","term_name":"sulfur compound binding","termid":"GO:1901681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"thienylcyclohexylpiperidine binding","synonyms":[{"name":"TCP binding","type":"broad"}],"termid":"GO:0016596"}


id: PBO:0040003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 14 effector protein","termid":"PBO:0040003"}


id: GO:2000440
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of toll-like receptor 15 signaling pathway.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pattern recognition receptor signaling pathway","termid":"GO:0062207"},{"relation_name":"regulates","term_name":"toll-like receptor 15 signaling pathway","termid":"GO:0035681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of toll-like receptor 15 signaling pathway","synonyms":[{"name":"regulation of TLR15 signaling pathway","type":"exact"},{"name":"regulation of toll-like receptor 15 signalling pathway","type":"exact"}],"termid":"GO:2000440"}


id: PBO:0028891
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_chromatin_at_transcribed_regions_during_vegetative_growth","termid":"PBO:0028891"}


id: GO:1990394
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of cell wall damage. The process begins with detection of the damage and ends with a change in state or activity of the cell.","definition_xrefs":["PMID:17287531"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to stimulus","termid":"GO:0051716"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to cell wall damage","termid":"GO:1990394"}


id: PBO:0072742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S100 calcium binding protein A7","termid":"PBO:0072742"}


id: GO:0033083
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of immature T cell proliferation.","definition_xrefs":["GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T cell proliferation","termid":"GO:0042129"},{"relation_name":"regulates","term_name":"immature T cell proliferation","termid":"GO:0033079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of immature T cell proliferation","termid":"GO:0033083"}


id: PBO:0086046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function involved in RNA metabolism; has structural similarity to SBDS, the human protein mutated in Shwachman-Diamond Syndrome (the yeast SBDS ortholog is SDO1); null mutation suppresses cdc13-1 temperature sensitivity; protein abundance increases in response to DNA replication stress","termid":"PBO:0086046"}


id: PBO:0072703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RUVBL2 pseudogene 1","termid":"PBO:0072703"}


id: GO:0022000
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The close range interaction of the anterior neural ridge to the caudal region of the neural plate that specifies the forebrain fate.","definition_xrefs":["GOC:jid","GO_REF:0000021","GOC:cls","GOC:dph","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental induction","termid":"GO:0031128"},{"relation_name":"part_of","term_name":"neural plate anterior/posterior regionalization","termid":"GO:0021999"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"forebrain induction by the anterior neural ridge","termid":"GO:0022000"}


id: PR:O13754
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tetratricopeptide repeat protein 4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01484"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hsp70/Hsp90 co-chaperone cns1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A2.04c","secondary_identifiers":["UniProtKB:O13754"],"synonyms":[{"name":"Spom972h-TTC4","type":"exact"}],"termid":"PR:O13754"}


id: PBO:0039669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adaptor related protein complex 3 subunit sigma 2","termid":"PBO:0039669"}


id: FYPO:0004424
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype in which the phosphorylation of threonine residues in one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete increased protein threonine phosphorylation (obsolete FYPO:0004424)","synonyms":[{"name":"increased peptidyl-threonine phosphorylation","type":"exact"},{"name":"increased threonine phosphorylation","type":"exact"}],"termid":"FYPO:0004424"}


id: PBO:0045985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EHMT2 and SLC44A4 antisense RNA 1","termid":"PBO:0045985"}


id: PBO:0042364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD163 molecule","termid":"PBO:0042364"}


id: GO:0010172
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the embryonic soma are generated and organized.","definition_xrefs":["GOC:ems"],"direct_ancestors":[{"relation_name":"is_a","term_name":"body morphogenesis","termid":"GO:0010171"},{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic body morphogenesis","termid":"GO:0010172"}


id: PATO:0001093
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001093 relative flux value (obsolete PATO:0001093)","termid":"PATO:0001093"}


id: PBO:0087139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein that binds specific mRNAs and interacts with She3p; part of the mRNA localization machinery that restricts accumulation of certain proteins to the bud; binds to ER-derived membranes and targets mRNAs to cortical ER","termid":"PBO:0087139"}


id: PR:Q9P7I1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- kha1 gene.","definition_xrefs":["UniProtKB:Q9P7I1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"K(+)/H(+) antiporter 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC105.01c","synonyms":[{"name":"Spom972h-kha1","type":"exact"}],"termid":"PR:Q9P7I1"}


id: GO:0018763
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-(ethylamino)-2-hydroxy-6-(isopropylamino)-1,3,5-triazine + H2O = N-isopropylammelide + ethylamine.","definition_xrefs":["EC:3.5.4.43"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds","termid":"GO:0016810"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0016810","GO:0003674"],"is_obsolete":false,"name":"hydroxydechloroatrazine ethylaminohydrolase activity","secondary_identifiers":["RHEA:23092","UM-BBD_enzymeID:r0114","MetaCyc:R122-RXN"],"synonyms":[{"name":"4-(ethylamino)-2-hydroxy-6-(isopropylamino)-1,3,5-triazine ethylaminohydrolase activity","type":"related"},{"name":"AtzB","type":"related"},{"name":"hydroxyatrazine ethylaminohydrolase activity","type":"exact"},{"name":"hydroxyatrazine hydrolase activity","type":"related"}],"termid":"GO:0018763"}


id: PBO:0074172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 36 member 3","termid":"PBO:0074172"}


id: PBO:0064412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PNMA family member 6E","termid":"PBO:0064412"}


id: PBO:0076014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine kinase 4","termid":"PBO:0076014"}


id: PBO:0052704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 17 pseudogene 5","termid":"PBO:0052704"}


id: FYPO:0003244
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mRNA splicing via the spliceosome takes place normally for some, but is decreased for other, specific introns.","definition_xrefs":["PMID:23754748"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased mRNA splicing, via spliceosome","termid":"FYPO:0003029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0000002","FYPO:0000294","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased mRNA splicing, via spliceosome, intron-specific","synonyms":[{"name":"differential pre-mRNA splicing defects","type":"exact"},{"name":"intron-specific abnormal mRNA splicing, via spliceosome during mitotic cell cycle","type":"related"},{"name":"intron-specific abnormal mRNA splicing, via spliceosome during vegetative growth","type":"exact"},{"name":"intron-specific abnormal nuclear mRNA splicing, via spliceosome","type":"exact"},{"name":"intron-specific mRNA splicing defects","type":"exact"}],"termid":"FYPO:0003244"}


id: PBO:0090941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium/calcium exchanger","termid":"PBO:0090941"}


id: PBO:0018246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"minus-end directed microtubule motor, kinesin Pkl1","termid":"PBO:0018246"}


id: GO:0075507
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Viral penetration into the host nucleus where the where a viral capsid docks on the cytoplasmic side of the nuclear pore complex (NPC) and ejects the viral genome through the pore into the nucleoplasm.","definition_xrefs":["VZ:989","PMID:22929056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral penetration into host nucleus","termid":"GO:0075732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"entry of viral genome into host nucleus via docking of viral capsid to the nuclear pore complex and injection of viral genome","termid":"GO:0075507"}


id: PBO:0045189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJB6 pseudogene 2","termid":"PBO:0045189"}


id: PBO:0084239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Indole-3-glycerol-phosphate synthase; forms bifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp2p","termid":"PBO:0084239"}


id: PBO:0004011
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Birt-Hogg-Dube syndrome","termid":"PBO:0004011"}


id: PBO:0060605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear cap binding protein subunit 1","termid":"PBO:0060605"}


id: GO:0051446
data:
  {"annotated_genes":["SJAG_03371","SJAG_03501","SJAG_04682","SJAG_01401","SJAG_03486","SJAG_03048","SJAG_05153","SJAG_06638","SJAG_00145","SJAG_02404","SJAG_02169","SJAG_04332","SJAG_04813","SJAG_01113","SJAG_01311","SJAG_01345","SJAG_03438","SJAG_04853","SJAG_00266","SJAG_02723","SJAG_01956","SJAG_05288","SJAG_00457"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91203,93088,98311,98397,103050,115077,115078],"is_not":false,"summary":null,"term":"GO:0051446"},{"annotations":[103967],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010846"},{"annotations":[91201,86403,105044],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051728"},{"annotations":[102641,101962,114358,98383,101805,105261,100448],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0110045"},{"annotations":[98310],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0075296"},{"annotations":[86784],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903024"},{"annotations":[112500,114219],"is_not":false,"rel_names":["regulates","is_a","positively_regulates"],"summary":null,"term":"GO:0140648"},{"annotations":[90593],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110032"},{"annotations":[91204],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905191"},{"annotations":[85129],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010845"},{"annotations":[90594,100908,97643,105046,98407],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0110044"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of progression through the meiotic cell cycle.","definition_xrefs":["GOC:dph","GOC:ai","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell cycle","termid":"GO:0045787"},{"relation_name":"is_a","term_name":"regulation of meiotic cell cycle","termid":"GO:0051445"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"meiotic cell cycle","termid":"GO:0051321"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00145":null,"SJAG_00266":null,"SJAG_00457":null,"SJAG_01113":null,"SJAG_01311":null,"SJAG_01345":null,"SJAG_01401":null,"SJAG_01956":null,"SJAG_02169":null,"SJAG_02404":null,"SJAG_02723":null,"SJAG_03048":null,"SJAG_03371":null,"SJAG_03438":null,"SJAG_03486":null,"SJAG_03501":null,"SJAG_04332":null,"SJAG_04682":null,"SJAG_04813":null,"SJAG_04853":null,"SJAG_05153":null,"SJAG_05288":null,"SJAG_06638":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"positive regulation of meiotic cell cycle","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of progression through meiotic cell cycle","type":"narrow"},{"name":"positive regulation of meiotic cell cycle progression","type":"exact"},{"name":"positive regulation of progression through meiotic cell cycle","type":"exact"},{"name":"stimulation of progression through meiotic cell cycle","type":"narrow"},{"name":"up regulation of progression through meiotic cell cycle","type":"exact"},{"name":"up-regulation of progression through meiotic cell cycle","type":"exact"},{"name":"upregulation of progression through meiotic cell cycle","type":"exact"}],"termid":"GO:0051446","terms_by_termid":{"GO:0010845":null,"GO:0010846":null,"GO:0051446":null,"GO:0051728":null,"GO:0075296":null,"GO:0110032":null,"GO:0110044":null,"GO:0110045":null,"GO:0140648":null,"GO:1903024":null,"GO:1905191":null}}


id: PBO:0034108
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_subsequence","termid":"PBO:0034108"}


id: PBO:0069704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 984, pseudogene","termid":"PBO:0069704"}


id: PR:O94692
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A RuvB-like 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02903","PANTHER:PTHR11093:SF2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RuvB-like helicase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC83.08","secondary_identifiers":["UniProtKB:O94692"],"synonyms":[{"name":"Spom972h-RUVBL2","type":"exact"}],"termid":"PR:O94692"}


id: PBO:0071081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 83","termid":"PBO:0071081"}


id: PBO:0060838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neural precursor cell expressed, developmentally down-regulated 9","termid":"PBO:0060838"}


id: PBO:0070405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication protein A1","termid":"PBO:0070405"}


id: MOD:00991
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-(sn-1-glyceryl)-L-cysteine","termid":"MOD:00991"}


id: GO:0033573
data:
  {"annotated_genes":["SJAG_04677","SJAG_04675"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[88490,88494],"is_not":false,"summary":null,"term":"GO:0033573"}]},"cv_name":"cellular_component","definition":"A protein complex composed of a multicopper ferroxidase that oxidizes Fe(II) to Fe(III), and a ferric iron permease that transports the produced Fe(III) into the cell. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations.","definition_xrefs":["GOC:jp","PMID:16522632","PMID:8599111"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"is_a","term_name":"transmembrane transporter complex","termid":"GO:1902495"},{"relation_name":"is_a","term_name":"ferroxidase complex","termid":"GO:1905862"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04675":null,"SJAG_04677":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"high-affinity iron permease complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"high affinity iron permease complex","type":"exact"}],"termid":"GO:0033573","terms_by_termid":{"GO:0033573":null}}


id: PBO:0111522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIFK pseudogene 2","termid":"PBO:0111522"}


id: PBO:0040599
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAG cochaperone 3","termid":"PBO:0040599"}


id: PBO:0070451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L3 pseudogene 8","termid":"PBO:0070451"}


id: PBO:0057570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 765","termid":"PBO:0057570"}


id: PBO:0073069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndecan binding protein 2","termid":"PBO:0073069"}


id: GO:0102158
data:
  {"annotated_genes":["SJAG_01300"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101882],"is_not":false,"summary":null,"term":"GO:0102158"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a very-long-chain (3R)-3-hydroxyacyl-CoA = H2O + a very-long-chain (2E)-enoyl-CoA. This reaction is the third (dehydration) step of the four-step fatty acid elongation cycle in the endoplasmic reticulum that extends fatty acids of C-16 or longer with an additional 2-C unit.","definition_xrefs":["PMID:16564093","PMID:19763486","RHEA:45812"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3-hydroxyacyl-CoA dehydratase activity","termid":"GO:0018812"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01300":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:4.2.1.134","MetaCyc:RXN-11750"],"synonyms":[{"name":"very-long-chain 3-hydroxyacyl-CoA dehydratase activity","type":"exact"}],"termid":"GO:0102158","terms_by_termid":{"GO:0102158":null}}


id: PBO:0053616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 656","termid":"PBO:0053616"}


id: PBO:0039473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 18C, pseudogene","termid":"PBO:0039473"}


id: PBO:0004808
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.1.1.86","termid":"PBO:0004808"}


id: GO:0047627
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5'-adenylyl sulfate + H2O = AMP + 2 H+ + sulfate.","definition_xrefs":["RHEA:17041","EC:3.6.2.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides","termid":"GO:0016819"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"adenylylsulfatase activity","secondary_identifiers":["MetaCyc:ADENYLYLSULFATASE-RXN","KEGG_REACTION:R00531"],"synonyms":[{"name":"adenosine 5-phosphosulfate sulfohydrolase activity","type":"related"},{"name":"adenylylsulfate sulfohydrolase activity","type":"related"},{"name":"adenylylsulphatase activity","type":"exact"}],"termid":"GO:0047627"}


id: PBO:0065978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPA1 related single stranded DNA binding protein, X-linked","termid":"PBO:0065978"}


id: PBO:0080361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 2 receptor 16 pseudogene","termid":"PBO:0080361"}


id: GO:0006605
data:
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id: PBO:0041026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'(2'), 5'-bisphosphate nucleotidase 1","termid":"PBO:0041026"}


id: PBO:0082848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Copper-binding transcription factor; activates transcription of the metallothionein genes CUP1-1 and CUP1-2 in response to elevated copper concentrations; required for regulation of copper genes in response to DNA-damaging reagents; CUP2 has a paralog, HAA1, that arose from the whole genome duplication","termid":"PBO:0082848"}


id: GO:0052688
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (3R)-3-isopropenyl-6-oxoheptanoate + CoA-SH + ATP = H2O + AMP + diphosphate + (3R)-3-isopropenyl-6-oxoheptanoyl-CoA.","definition_xrefs":["KEGG_REACTION:R06515"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"},{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016874","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"(3R)-3-isopropenyl-6-oxoheptanoate:CoA ligase (AMP-forming) activity","synonyms":[{"name":"3-isopropenyl-6-oxoheptanoyl-CoA synthetase activity","type":"broad"}],"termid":"GO:0052688"}


id: PBO:0067844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 146","termid":"PBO:0067844"}


id: PBO:0002764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UbiE family methyltransferase (predicted)","termid":"PBO:0002764"}


id: PBO:0068641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 22, pseudogene","termid":"PBO:0068641"}


id: PBO:0078971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ser (anticodon CGA) 3-1","termid":"PBO:0078971"}


id: GO:0014031
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process aimed at the progression of a mesenchymal cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell.","definition_xrefs":["GOC:ef","GOC:dh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell development","termid":"GO:0048468"},{"relation_name":"part_of","term_name":"mesenchymal cell differentiation","termid":"GO:0048762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal cell development","termid":"GO:0014031"}


id: FYPO:0004961
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at replication origins is increased.","definition_xrefs":["PMID:12419251","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to chromatin during vegetative growth","termid":"FYPO:0003011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"increased protein localization to chromatin at replication origin","synonyms":[{"name":"increased protein localisation to chromatin at replication origin","type":"exact"},{"name":"increased protein localization to chromatin at replication origins during mitotic cell cycle","type":"related"},{"name":"increased protein localization to chromatin at replication origins during vegetative growth","type":"exact"}],"termid":"FYPO:0004961"}


id: GO:0071619
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of introducing a phosphate group onto a serine residue at position 2 within the heptapeptide repeat (YSPTSPS) of the C-terminal domain of RNA polymerase II. Typically, phosphorylation of serine 2 (Ser2) occurs subsequent to phosphorylation of serine 5 and is thus seen in the middle and 3' ends of genes. In vivo, Ser2 phosphorylation is primarily performed by CTDK-I in S. cerevisiae or CDK9 in metazoans.","definition_xrefs":["GOC:krc","PMID:17079683"],"gene_count":0,"genotype_count":0,"name":"obsolete phosphorylation of RNA polymerase II C-terminal domain serine 2 residues (obsolete GO:0071619)","termid":"GO:0071619"}


id: GO:0044650
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of a symbiont to a host cell via adhesion molecules, general stickiness etc., either directly or indirectly.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adhesion of symbiont to host","termid":"GO:0044406"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adhesion of symbiont to host cell","termid":"GO:0044650"}


id: PBO:0039881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 40","termid":"PBO:0039881"}


id: GO:0039535
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the RIG-I signaling pathway.","definition_xrefs":["GOC:jl","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039531"},{"relation_name":"regulates","term_name":"RIG-I signaling pathway","termid":"GO:0039529"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of RIG-I signaling pathway","synonyms":[{"name":"regulation of DDX58 signaling pathway","type":"exact"},{"name":"regulation of RIG-I signalling pathway","type":"exact"},{"name":"regulation of retinoic acid inducible gene I signaling pathway","type":"exact"}],"termid":"GO:0039535"}


id: GO:0098818
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that hyerpolarizes a postsynaptic membrane relative to its resting potential. This has an inhibitory effect on the post-synaptic cell, moving the membrane potential away from the firing threshold.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of postsynaptic membrane potential","termid":"GO:0060078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hyperpolarization of postsynaptic membrane","termid":"GO:0098818"}


id: PBO:0049096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 153","termid":"PBO:0049096"}


id: PBO:0012858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome subunit Rrp42","termid":"PBO:0012858"}


id: FYPO:0006639
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell has a normal diameter (thickness; width).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell size","termid":"FYPO:0001124"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal vegetative cell diameter","synonyms":[{"name":"normal cell diameter during vegetative growth","type":"exact"},{"name":"normal vegetative cell diameter during mitotic cell cycle","type":"related"},{"name":"normal vegetative cell thickness","type":"exact"},{"name":"normal vegetative cell width","type":"exact"}],"termid":"FYPO:0006639"}


id: GO:0044820
data:
  {"annotated_genes":["SJAG_01601","SJAG_01777","SJAG_01067","SJAG_03048","SJAG_01263","SJAG_03092"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85832,95153,101098,101948,112885],"is_not":false,"summary":null,"term":"GO:0044820"},{"annotations":[98391],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1904537"}]},"cv_name":"biological_process","definition":"The process in which a telomere is maintained in a specific location at the nuclear periphery, as part of a mitotic cell cycle.","definition_xrefs":["PMID:25778919","GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telomere tethering at nuclear periphery","termid":"GO:0034398"},{"relation_name":"part_of","term_name":"mitotic telomere clustering and tethering at nuclear periphery","termid":"GO:0120109"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01067":null,"SJAG_01263":null,"SJAG_01601":null,"SJAG_01777":null,"SJAG_03048":null,"SJAG_03092":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"mitotic telomere tethering at nuclear periphery","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0044820","terms_by_termid":{"GO:0044820":null,"GO:1904537":null}}


id: MOD:00756
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-valine residue to 4-hydroxy-D-valine.","definition_xrefs":["RESID:AA0388","PubMed:15853325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monohydroxylated residue","termid":"MOD:00425"},{"relation_name":"is_a","term_name":"stereoisomerized residue","termid":"MOD:00664"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-hydroxy-D-valine","synonyms":[{"name":"(2R,3Xi)-2-amino-4-hydroxy-3-methylbutanoic acid","type":"exact"},{"name":"4-hydroxy-D-valine","type":"exact"},{"name":"D-4HyVal","type":"exact"},{"name":"D-gamma-hydroxyvaline","type":"exact"},{"name":"MOD_RES D-4-hydroxyvaline","type":"exact"}],"termid":"MOD:00756"}


id: PBO:0002519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"threonine synthase (predicted)","termid":"PBO:0002519"}


id: GO:0102325
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: biphenyl-2,2',3-triol + O2 + NADH + H+ = 2,2',3,3'-tetrahydroxybiphenyl + NAD + H2O.","definition_xrefs":["GOC:pz","RHEA:63516"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2,2',3-trihydroxybiphenyl monooxygenase activity","secondary_identifiers":["MetaCyc:RXN-13169"],"termid":"GO:0102325"}


id: GO:0034417
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2R)-2,3-bisphosphoglycerate + H2O = (2R)-2-phosphoglycerate + phosphate.","definition_xrefs":["RHEA:27381","GOC:mah","PMID:18413611"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003824","GO:0016788","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"bisphosphoglycerate 3-phosphatase activity","secondary_identifiers":["EC:3.1.3.80","MetaCyc:RXN-11102","KEGG_REACTION:R09532"],"synonyms":[{"name":"2,3-bisphospho-D-glycerate 3-phosphohydrolase activity","type":"related"}],"termid":"GO:0034417"}


id: PBO:0004807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetohydroxyacid reductoisomerase (predicted)","termid":"PBO:0004807"}


id: GO:0032908
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta1.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transforming growth factor beta production","termid":"GO:0071634"},{"relation_name":"regulates","term_name":"transforming growth factor beta1 production","termid":"GO:0032905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of transforming growth factor beta1 production","synonyms":[{"name":"regulation of TGF-B1 production","type":"exact"},{"name":"regulation of TGFB1 production","type":"exact"},{"name":"regulation of transforming growth factor-beta1 production","type":"exact"}],"termid":"GO:0032908"}


id: PBO:0039874
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 31","termid":"PBO:0039874"}


id: SO:0001081
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A motif comprising two helices separated by a turn.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"has_part","term_name":"peptide_helix","termid":"SO:0001114"},{"relation_name":"has_part","term_name":"polypeptide_turn_motif","termid":"SO:0001128"},{"relation_name":"is_a","term_name":"polypeptide_structural_motif","termid":"SO:0001079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"helix_turn_helix","secondary_identifiers":["BS:00147"],"synonyms":[{"name":"HTH","type":"related"},{"name":"helix turn helix","type":"exact"},{"name":"helix-turn-helix","type":"exact"}],"termid":"SO:0001081"}


id: PBO:0080651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WEE1 G2 checkpoint kinase","termid":"PBO:0080651"}


id: GO:0030840
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of intermediate filament polymerization.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intermediate filament polymerization","termid":"GO:0030839"},{"relation_name":"is_a","term_name":"negative regulation of protein polymerization","termid":"GO:0032272"},{"relation_name":"is_a","term_name":"negative regulation of cytoskeleton organization","termid":"GO:0051494"},{"relation_name":"negatively_regulates","term_name":"intermediate filament polymerization","termid":"GO:0045107"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"negatively_regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0007010","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"negative regulation of intermediate filament polymerization","synonyms":[{"name":"down regulation of intermediate filament polymerization","type":"exact"},{"name":"down-regulation of intermediate filament polymerization","type":"exact"},{"name":"downregulation of intermediate filament polymerization","type":"exact"},{"name":"inhibition of intermediate filament polymerization","type":"narrow"},{"name":"negative regulation of intermediate filament polymerization and/or depolymerization","type":"broad"}],"termid":"GO:0030840"}


id: PBO:0068165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 472","termid":"PBO:0068165"}


id: PBO:0111063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-coding RNA, antisense ubp8","termid":"PBO:0111063"}


id: FYPO:0005346
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cytoplasm is abolished, and the protein is instead present in the nucleus, during interphase of the mitotic cell cycle.","definition_xrefs":["PMID:9635190","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization during vegetative growth","termid":"FYPO:0001179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to cytoplasm, with protein mislocalized to nucleus during mitotic interphase","synonyms":[{"name":"abolished protein localisation to cytoplasm, with protein mislocalised to nucleus during mitotic interphase","type":"exact"},{"name":"abolished protein localization to cytoplasm, with protein mislocalized to nucleus during interphase during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to cytoplasm, with protein mislocalized to nucleus during mitotic interphase during vegetative growth","type":"exact"},{"name":"protein localization to cytoplasm abolished, with protein mislocalized to nucleus during mitotic interphase","type":"exact"}],"termid":"FYPO:0005346"}


id: PBO:0081499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 397","termid":"PBO:0081499"}


id: PBO:0077586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymopoietin","termid":"PBO:0077586"}


id: GO:0017056
data:
  {"annotated_genes":["SJAG_01013","SJAG_03593","SJAG_03182","SJAG_04017","SJAG_03729","SJAG_02210","SJAG_03299","SJAG_01374","SJAG_02757","SJAG_04148","SJAG_03986","SJAG_00375","SJAG_04645","SJAG_01185","SJAG_03300","SJAG_00962","SJAG_01584","SJAG_00471","SJAG_00093","SJAG_05243","SJAG_02274","SJAG_01834","SJAG_01065"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[85070,85084,87007,87768,89478,90042,91027,92171,96441,97175,99014,101384,102155,103773,105859,106429,109257,110898,110996,111515,111548,112437,112480],"is_not":false,"summary":null,"term":"GO:0017056"}]},"cv_name":"molecular_function","definition":"The action of a molecule that contributes to the structural integrity of the nuclear pore complex, a protein-lined channel in the nuclear envelope that allows the transfer of macromolecules.","definition_xrefs":["GOC:mah","PMID:25802992"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structural molecule activity","termid":"GO:0005198"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00093":null,"SJAG_00375":null,"SJAG_00471":null,"SJAG_00962":null,"SJAG_01013":null,"SJAG_01065":null,"SJAG_01185":null,"SJAG_01374":null,"SJAG_01584":null,"SJAG_01834":null,"SJAG_02210":null,"SJAG_02274":null,"SJAG_02757":null,"SJAG_03182":null,"SJAG_03299":null,"SJAG_03300":null,"SJAG_03593":null,"SJAG_03729":null,"SJAG_03986":null,"SJAG_04017":null,"SJAG_04148":null,"SJAG_04645":null,"SJAG_05243":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005198"}],"interesting_parent_ids":["GO:0005198","GO:0003674"],"is_obsolete":false,"name":"structural constituent of nuclear pore","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-192627","GO:0005487","Reactome:R-HSA-6783483","Reactome:R-HSA-192925","Reactome:R-HSA-1176059","Reactome:R-HSA-5252041","Reactome:R-HSA-5661474","Reactome:R-HSA-170796","Reactome:R-HSA-5578744"],"synonyms":[{"name":"nuclear pore activity","type":"related"},{"name":"nucleocytoplasmic transporter activity","type":"exact"}],"termid":"GO:0017056","terms_by_termid":{"GO:0017056":null}}


id: PBO:0113243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclear peptidyl-prolyl cis-trans isomerase (PPIase); impacts expression of multiple genes via its role in nucleosome assembly; catalyzes isomerization of proline residues in histones H3 and H4, which affects lysine methylation of those histones; role in rDNA maintenance; PPIase domain acts as a transcriptional repressor when tethered to DNA by lexA, and repressor activity is dependent on PPIase activity; contains a nucleoplasmin-like fold and can form pentamers","termid":"PBO:0113243"}


id: GO:0060030
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed migration of individual cells and small groups of cells toward the dorsal midline during gastrulation. This process does not require cell rearrangement.","definition_xrefs":["PMID:12062082","GOC:dph","GOC:dgf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration involved in gastrulation","termid":"GO:0042074"},{"relation_name":"part_of","term_name":"convergent extension involved in gastrulation","termid":"GO:0060027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dorsal convergence","termid":"GO:0060030"}


id: GO:0050223
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3,4-dihydroxybenzoate + H+ = catechol + CO2.","definition_xrefs":["RHEA:22416","EC:4.1.1.63"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"protocatechuate decarboxylase activity","secondary_identifiers":["KEGG_REACTION:R00822","MetaCyc:PROTOCATECHUATE-DECARBOXYLASE-RXN"],"synonyms":[{"name":"3,4-dihydrobenzoate decarboxylase activity","type":"related"},{"name":"3,4-dihydroxybenzoate carboxy-lyase (catechol-forming)","type":"related"},{"name":"3,4-dihydroxybenzoate decarboxylase activity","type":"related"},{"name":"protocatechuate carboxy-lyase activity","type":"related"}],"termid":"GO:0050223"}


id: PBO:0072942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small Cajal body-specific RNA 21B","termid":"PBO:0072942"}


id: PBO:0058948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"marker of proliferation Ki-67","termid":"PBO:0058948"}


id: PBO:0042297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD6 molecule","termid":"PBO:0042297"}


id: PBO:0065985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinoic acid early transcript 1L","termid":"PBO:0065985"}


id: GO:1905744
data:
  {"annotated_genes":["SJAG_01040","SJAG_01511"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94601],"is_not":false,"summary":null,"term":"GO:1905744"},{"annotations":[114404],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905746"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mRNA cis splicing, via spliceosome.","definition_xrefs":["GO_REF:0000058","PMID:2880558","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mRNA splicing, via spliceosome","termid":"GO:0048024"},{"relation_name":"regulates","term_name":"mRNA cis splicing, via spliceosome","termid":"GO:0045292"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01040":null,"SJAG_01511":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0016071"],"is_obsolete":false,"name":"regulation of mRNA cis splicing, via spliceosome","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of nuclear mRNA cis splicing, via U2-type spliceosome","type":"narrow"},{"name":"regulation of nuclear mRNA cis splicing, via spliceosome","type":"exact"},{"name":"regulation of splicing","type":"broad"}],"termid":"GO:1905744","terms_by_termid":{"GO:1905744":null,"GO:1905746":null}}


id: PBO:0050456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HOMER2 pseudogene 2","termid":"PBO:0050456"}


id: FYECO:0000439
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which glycerophosphocholine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ glycerophosphocholine","secondary_identifiers":["PMID:38133430"],"termid":"FYECO:0000439"}


id: PBO:0052785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 24","termid":"PBO:0052785"}


id: MOD:00061
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to N-acetyl-L-threonine.","definition_xrefs":["PubMed:2106685","PubMed:6997045","RESID:AA0052","PubMed:14730666","PubMed:11857757","PubMed:15350136","PubMed:11999733","PubMed:12175151"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylated L-threonine","termid":"MOD:01186"},{"relation_name":"is_a","term_name":"alpha-amino acetylated residue","termid":"MOD:01458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N-acetyl-L-threonine","synonyms":[{"name":"(2S,3R)-2-acetamido-3-hydroxybutanoic acid","type":"exact"},{"name":"2-acetylamino-3-hydroxybutanoic acid","type":"exact"},{"name":"2-acetylazanyl-3-hydroxybutanoic acid","type":"exact"},{"name":"Acetyl","type":"related"},{"name":"Acetylation","type":"related"},{"name":"MOD_RES N-acetylthreonine","type":"exact"},{"name":"N-acetyl-L-threonine","type":"exact"},{"name":"N-acetylated L-threonine","type":"exact"},{"name":"N-acetylthreonine","type":"exact"},{"name":"N-methylcarbonylthreonine","type":"exact"},{"name":"NAcThr","type":"exact"}],"termid":"MOD:00061"}


id: PBO:0052600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin subunit alpha 7","termid":"PBO:0052600"}


id: PBO:0066122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras association domain family member 2","termid":"PBO:0066122"}


id: GO:0021583
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of the pons is generated and organized. The pons lies above the medulla and next to the cerebellum. The pons conveys information about movement from the cerebral hemisphere to the cerebellum.","definition_xrefs":["GOC:cls","GOC:dgh","ISBN:0838580343","GOC:jid","GO_REF:0000021","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"pons development","termid":"GO:0021548"},{"relation_name":"part_of","term_name":"hindbrain morphogenesis","termid":"GO:0021575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pons morphogenesis","termid":"GO:0021583"}


id: PBO:0041635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CACNA1C intronic transcript 1","termid":"PBO:0041635"}


id: PBO:0001968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pericentrin Pcp1","termid":"PBO:0001968"}


id: PBO:0089763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase, meiotic, STKc MAK-like Pit1","termid":"PBO:0089763"}


id: GO:0022022
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of septal cells, resulting in the expansion of a cell population.","definition_xrefs":["GO_REF:0000021","GOC:dgh","GOC:cls","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"subpallium cell proliferation in forebrain","termid":"GO:0022012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"septal cell proliferation","synonyms":[{"name":"septum cell proliferation","type":"exact"}],"termid":"GO:0022022"}


id: PBO:0109038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CFAP69 pseudogene 1","termid":"PBO:0109038"}


id: PBO:0005084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial aspartate-tRNA ligase (predicted)","termid":"PBO:0005084"}


id: PBO:0054360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1753","termid":"PBO:0054360"}


id: GO:0090132
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the population of cells that make up an epithelium undergo directed movement.","definition_xrefs":["GOC:tb","GOC:dph","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue migration","termid":"GO:0090130"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelium migration","termid":"GO:0090132"}


id: GO:1902552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of catalase activity.","definition_xrefs":["GOC:TermGenie","PMID:24285797"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of catalase activity","termid":"GO:1902551"},{"relation_name":"is_a","term_name":"negative regulation of peroxidase activity","termid":"GO:2000469"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of catalase activity","synonyms":[{"name":"down regulation of CAT","type":"related"},{"name":"down regulation of bacterial catalase-peroxidase activity","type":"narrow"},{"name":"down regulation of caperase activity","type":"exact"},{"name":"down regulation of catalase activity","type":"exact"},{"name":"down regulation of catalase reaction","type":"exact"},{"name":"down regulation of catalase-peroxidase activity","type":"exact"},{"name":"down regulation of equilase activity","type":"exact"},{"name":"down regulation of haem catalase activity","type":"narrow"},{"name":"down regulation of heme catalase activity","type":"narrow"},{"name":"down regulation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity","type":"exact"},{"name":"down regulation of manganese catalase activity","type":"narrow"},{"name":"down regulation of optidase activity","type":"exact"},{"name":"down-regulation of CAT","type":"related"},{"name":"down-regulation of bacterial catalase-peroxidase activity","type":"narrow"},{"name":"down-regulation of caperase activity","type":"exact"},{"name":"down-regulation of catalase activity","type":"exact"},{"name":"down-regulation of catalase reaction","type":"exact"},{"name":"down-regulation of catalase-peroxidase activity","type":"exact"},{"name":"down-regulation of equilase activity","type":"exact"},{"name":"down-regulation of haem catalase activity","type":"narrow"},{"name":"down-regulation of heme catalase activity","type":"narrow"},{"name":"down-regulation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity","type":"exact"},{"name":"down-regulation of manganese catalase activity","type":"narrow"},{"name":"down-regulation of optidase activity","type":"exact"},{"name":"downregulation of CAT","type":"related"},{"name":"downregulation of bacterial catalase-peroxidase activity","type":"narrow"},{"name":"downregulation of caperase activity","type":"exact"},{"name":"downregulation of catalase activity","type":"exact"},{"name":"downregulation of catalase reaction","type":"exact"},{"name":"downregulation of catalase-peroxidase activity","type":"exact"},{"name":"downregulation of equilase activity","type":"exact"},{"name":"downregulation of haem catalase activity","type":"narrow"},{"name":"downregulation of heme catalase activity","type":"narrow"},{"name":"downregulation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity","type":"exact"},{"name":"downregulation of manganese catalase activity","type":"narrow"},{"name":"downregulation of optidase activity","type":"exact"},{"name":"inhibition of CAT","type":"related"},{"name":"inhibition of bacterial catalase-peroxidase activity","type":"narrow"},{"name":"inhibition of caperase activity","type":"narrow"},{"name":"inhibition of catalase activity","type":"narrow"},{"name":"inhibition of catalase reaction","type":"narrow"},{"name":"inhibition of catalase-peroxidase activity","type":"narrow"},{"name":"inhibition of equilase activity","type":"narrow"},{"name":"inhibition of haem catalase activity","type":"narrow"},{"name":"inhibition of heme catalase activity","type":"narrow"},{"name":"inhibition of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity","type":"narrow"},{"name":"inhibition of manganese catalase activity","type":"narrow"},{"name":"inhibition of optidase activity","type":"narrow"},{"name":"negative regulation of CAT","type":"related"},{"name":"negative regulation of bacterial catalase-peroxidase activity","type":"narrow"},{"name":"negative regulation of caperase activity","type":"exact"},{"name":"negative regulation of catalase reaction","type":"exact"},{"name":"negative regulation of catalase-peroxidase activity","type":"exact"},{"name":"negative regulation of equilase activity","type":"exact"},{"name":"negative regulation of haem catalase activity","type":"narrow"},{"name":"negative regulation of heme catalase activity","type":"narrow"},{"name":"negative regulation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity","type":"exact"},{"name":"negative regulation of manganese catalase activity","type":"narrow"},{"name":"negative regulation of optidase activity","type":"exact"}],"termid":"GO:1902552"}


id: GO:0034836
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 6-hydroxy-2-mercaptobenzothiazole + 1/2 O2 = 6,7-dihydroxy-2-mercaptobenzothiazole.","definition_xrefs":["UM-BBD_reactionID:r1181"],"gene_count":0,"genotype_count":0,"name":"obsolete 6-hydroxy-2-mercaptobenzothiazole monooxygenase activity (obsolete GO:0034836)","termid":"GO:0034836"}


id: PBO:0074622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 21","termid":"PBO:0074622"}


id: PBO:0080108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UTP25 small subunit processome component","termid":"PBO:0080108"}


id: PBO:0050419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein F","termid":"PBO:0050419"}


id: GO:0019399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cyclohexanol metabolic process in which cyclohexanol is converted to adipate.","definition_xrefs":["MetaCyc:CYCLOHEXANOL-OXIDATION-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclohexanol metabolic process","termid":"GO:0018891"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"cyclohexanol oxidation","termid":"GO:0019399"}


id: GO:0042643
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The actin part of any complex of actin, myosin, and accessory proteins.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete actomyosin, actin portion (obsolete GO:0042643)","termid":"GO:0042643"}


id: GO:0070636
data:
  {"annotated_genes":["SJAG_00957"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86713],"is_not":false,"summary":null,"term":"GO:0070636"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: nicotinic acid riboside + H2O = nicotinic acid + D-ribose.","definition_xrefs":["GOC:mah","PMID:19001417"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing N-glycosyl compounds","termid":"GO:0016799"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00957":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0016798","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"nicotinic acid riboside hydrolase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"D-ribosylnicotinate hydrolase activity","type":"exact"},{"name":"D-ribosylnicotinic acid hydrolase activity","type":"exact"},{"name":"nicotinate ribonucleoside hydrolase activity","type":"exact"},{"name":"nicotinate riboside hydrolase activity","type":"exact"},{"name":"nicotinic acid ribonucleoside hydrolase activity","type":"exact"}],"termid":"GO:0070636","terms_by_termid":{"GO:0070636":null}}


id: GO:0031326
data:
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id: PR:Q9HE06
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-dependent RNA helicase DHX35 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00877"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC20H4.09","secondary_identifiers":["UniProtKB:Q9HE06"],"synonyms":[{"name":"DEAH-box helicase C20H4.09 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-DHX35","type":"exact"}],"termid":"PR:Q9HE06"}


id: FYPO:0004235
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A gene expression phenotype in which RNA levels vary over the course of the mitotic cell cycle normally (i.e. levels are indistinguishable from wild type at any assayed point). Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected.","definition_xrefs":["PMID:21118960","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"},{"relation_name":"is_a","term_name":"gene expression regulation phenotype during vegetative growth","termid":"FYPO:0001333"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal RNA level oscillation during mitotic cell cycle","synonyms":[{"name":"normal RNA level fluctuation during mitotic cell cycle","type":"exact"},{"name":"normal periodic expression of RNA during mitotic cell cycle","type":"exact"},{"name":"normal transcript level oscillation during mitotic cell cycle","type":"exact"}],"termid":"FYPO:0004235"}


id: PBO:0058875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 10226","termid":"PBO:0058875"}


id: PBO:0016068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER protein translocation subcomplex subunit (predicted)","termid":"PBO:0016068"}


id: PBO:0087140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein that directly activates mRNA decapping; binds mRNA substrate and enhances activity of decapping proteins Dcp1p and Dcp2p; has a role in translation during heat stress; protein increases in abundance and relocalizes to nucleolus and to nuclear foci upon DNA replication stress; EDC2 has a paralog, EDC1, that arose from the whole genome duplication","termid":"PBO:0087140"}


id: PBO:0045162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein axonemal intermediate chain 2","termid":"PBO:0045162"}


id: PBO:0013788
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae TPS1","termid":"PBO:0013788"}


id: PBO:0058160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4454","termid":"PBO:0058160"}


id: PBO:0002010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho-type GTPase activating protein Rga2 (predicted)","termid":"PBO:0002010"}


id: GO:0009998
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that restricts, stops or prevents a cell from specifying into a retinal cone cell.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell fate specification","termid":"GO:0009996"},{"relation_name":"is_a","term_name":"regulation of retinal cone cell fate specification","termid":"GO:0042673"},{"relation_name":"is_a","term_name":"negative regulation of retinal cone cell fate commitment","termid":"GO:0060226"},{"relation_name":"negatively_regulates","term_name":"retinal cone cell fate specification","termid":"GO:0042672"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of retinal cone cell fate specification","synonyms":[{"name":"down regulation of retinal cone cell fate specification","type":"exact"},{"name":"down-regulation of retinal cone cell fate specification","type":"exact"},{"name":"downregulation of retinal cone cell fate specification","type":"exact"},{"name":"inhibition of retinal cone cell fate specification","type":"narrow"},{"name":"negative regulation of retina cone cell fate specification","type":"exact"},{"name":"suppression of retina cone cell fate","type":"exact"},{"name":"suppression of retinal cone cell fate","type":"exact"}],"termid":"GO:0009998"}


id: GO:0021805
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of a cell body from the ventricular zone to the pial surface with a concomitant shortening of the process that extends to the pial surface.","definition_xrefs":["GOC:cls","PMID:12626695","GOC:dgh","GO_REF:0000021","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell motility","termid":"GO:0048870"},{"relation_name":"part_of","term_name":"somal translocation","termid":"GO:0021802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell movement involved in somal translocation","synonyms":[{"name":"cell motility involved in somal translocation","type":"exact"}],"termid":"GO:0021805"}


id: PBO:0079875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF3A pseudogene 2","termid":"PBO:0079875"}


id: PBO:0087295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Single-stranded DNA endonuclease; cleaves single-stranded DNA during nucleotide excision repair to excise damaged DNA; subunit of Nucleotide Excision Repair Factor 3 (NEF3); homolog of human XPG protein","termid":"PBO:0087295"}


id: PBO:0071687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37 pseudogene 19","termid":"PBO:0071687"}


id: GO:0170035
data:
  {"annotated_genes":["SJAG_03398","SJAG_00495","SJAG_04145","SJAG_03641","SJAG_03290","SJAG_00881","SJAG_03434","SJAG_00830","SJAG_02450","SJAG_02901","SJAG_03861","SJAG_00937","SJAG_00714","SJAG_00493","SJAG_01903","SJAG_02235","SJAG_01271"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102767],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019544"},{"annotations":[109211,93387],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019547"},{"annotations":[102768,93388,109212],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010121"},{"annotations":[101984],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006530"},{"annotations":[107819],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006533"},{"annotations":[87749],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006540"},{"annotations":[78515],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006538"},{"annotations":[93902],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006546"},{"annotations":[83507,84743,109036,92447],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019464"},{"annotations":[107236],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042853"},{"annotations":[103118,113998],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010133"},{"annotations":[99794,90254],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006567"},{"annotations":[102774],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006572"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of an L-amino acid.","definition_xrefs":["GOC:edw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-amino acid metabolic process","termid":"GO:0170033"},{"relation_name":"is_a","term_name":"alpha-amino acid catabolic process","termid":"GO:1901606"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00493":null,"SJAG_00495":null,"SJAG_00714":null,"SJAG_00830":null,"SJAG_00881":null,"SJAG_00937":null,"SJAG_01271":null,"SJAG_01903":null,"SJAG_02235":null,"SJAG_02450":null,"SJAG_02901":null,"SJAG_03290":null,"SJAG_03398":null,"SJAG_03434":null,"SJAG_03641":null,"SJAG_03861":null,"SJAG_04145":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"L-amino acid catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"L-amino acid breakdown","type":"exact"},{"name":"L-amino acid catabolism","type":"exact"},{"name":"L-amino acid degradation","type":"exact"}],"termid":"GO:0170035","terms_by_termid":{"GO:0006530":null,"GO:0006533":null,"GO:0006538":null,"GO:0006540":null,"GO:0006546":null,"GO:0006567":null,"GO:0006572":null,"GO:0010121":null,"GO:0010133":null,"GO:0019464":null,"GO:0019544":null,"GO:0019547":null,"GO:0042853":null}}


id: GO:0051138
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of natural killer T cell differentiation.","definition_xrefs":["ISBN:0781735149","PMID:12154375","PMID:9133426"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of alpha-beta T cell differentiation","termid":"GO:0046638"},{"relation_name":"is_a","term_name":"regulation of NK T cell differentiation","termid":"GO:0051136"},{"relation_name":"positively_regulates","term_name":"NK T cell differentiation","termid":"GO:0001865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"positive regulation of NK T cell differentiation","synonyms":[{"name":"activation of NK T cell differentiation","type":"narrow"},{"name":"positive regulation of NK T cell development","type":"related"},{"name":"positive regulation of NK T lymphocyte differentiation","type":"exact"},{"name":"positive regulation of NK T-cell differentiation","type":"exact"},{"name":"positive regulation of NK T-lymphocyte differentiation","type":"exact"},{"name":"positive regulation of NKT cell differentiation","type":"exact"},{"name":"positive regulation of NT cell differentiation","type":"exact"},{"name":"positive regulation of natural T cell differentiation","type":"exact"},{"name":"positive regulation of natural killer T cell differentiation","type":"exact"},{"name":"stimulation of NK T cell differentiation","type":"narrow"},{"name":"up regulation of NK T cell differentiation","type":"exact"},{"name":"up-regulation of NK T cell differentiation","type":"exact"},{"name":"upregulation of NK T cell differentiation","type":"exact"}],"termid":"GO:0051138"}


id: PBO:0064289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasminogen like A (pseudogene)","termid":"PBO:0064289"}


id: PBO:0059200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAS related GPR family member X7, pseudogene","termid":"PBO:0059200"}


id: GO:0050561
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: tRNA(Glx) + L-glutamate + ATP = glutamyl-tRNA(Glx) + diphosphate + AMP.","definition_xrefs":["MetaCyc:6.1.1.24-RXN","EC:6.1.1.24"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140101","GO:0003824","GO:0016874","GO:0003674","GO:0140098"],"is_obsolete":false,"name":"glutamate-tRNA(Gln) ligase activity","secondary_identifiers":["RHEA:18397"],"synonyms":[{"name":"L-glutamate:tRNAGlx ligase (AMP-forming)","type":"related"},{"name":"glutamate-tRNAGln ligase activity","type":"exact"},{"name":"nondiscriminating glutamyl-tRNA synthetase activity","type":"related"}],"termid":"GO:0050561"}


id: GO:1903778
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a vacuolar membrane.","definition_xrefs":["GOC:TermGenie","PMID:25378562","GO_REF:0000087"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to membrane","termid":"GO:0072657"},{"relation_name":"is_a","term_name":"protein localization to vacuole","termid":"GO:0072665"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to vacuolar membrane","synonyms":[{"name":"protein localisation in vacuolar membrane","type":"exact"},{"name":"protein localisation to vacuolar membrane","type":"exact"},{"name":"protein localization in vacuolar membrane","type":"exact"}],"termid":"GO:1903778"}


id: GO:0051117
data:
  {"annotated_genes":["SJAG_00516"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72959],"is_not":false,"summary":null,"term":"GO:0051117"}]},"cv_name":"molecular_function","definition":"Binding to an ATPase, any enzyme that catalyzes the hydrolysis of ATP.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme binding","termid":"GO:0019899"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00516":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"ATPase binding","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0051117","terms_by_termid":{"GO:0051117":null}}


id: PBO:0088766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNase P and RNase MRP subunit Rpp40","termid":"PBO:0088766"}


id: PBO:0088384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial N(5)-glutamine methyltransferase","termid":"PBO:0088384"}


id: PBO:0051810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IQ motif and ubiquitin domain containing","termid":"PBO:0051810"}


id: FYPO:0000429
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the G0 to G1 transition begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal G0 to G1 transition","termid":"FYPO:0002955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000631"],"is_obsolete":false,"name":"delayed G0 to G1 transition","synonyms":[{"name":"delayed G0/G1 transition","type":"exact"},{"name":"delayed exit from G0","type":"exact"},{"name":"delayed exit from cell quiescence","type":"exact"},{"name":"slow cell population growth following nitrogen starvation","type":"related"}],"termid":"FYPO:0000429"}


id: PBO:0069244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 499, pseudogene","termid":"PBO:0069244"}


id: GO:0018725
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: trans-3,4-dihydrodiolphenanthrene + 2 X-SO3(-) = 2 HX + phenanthrene-3,4-dihydrodiolsulfate conjugate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete trans-3,4-dihydrodiolphenanthrene sulfotransferase activity (obsolete GO:0018725)","synonyms":[{"name":"trans-3,4-dihydrodiolphenanthrene sulphotransferase activity","type":"exact"}],"termid":"GO:0018725"}


id: GO:0010519
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of phospholipase activity, the hydrolysis of a phospholipid.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phospholipase activity","termid":"GO:0010517"},{"relation_name":"is_a","term_name":"negative regulation of lipase activity","termid":"GO:0060192"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of phospholipase activity","termid":"GO:0010519"}


id: PBO:0056720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meprin A subunit alpha pseudogene 2","termid":"PBO:0056720"}


id: GO:0036135
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of a Schwann cell from one site to another. A Schwann cell is a glial cell that ensheathes axons of neuron in the peripheral nervous system and is necessary for their maintenance and function.","definition_xrefs":["CL:0002573","PMID:20335460"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell migration","termid":"GO:0008347"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Schwann cell migration","termid":"GO:0036135"}


id: PBO:0068553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 4, pseudogene","termid":"PBO:0068553"}


id: PR:O14073
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPACUNK4.08 gene.","definition_xrefs":["UniProtKB:O14073","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dipeptidyl aminopeptidase C2E11.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPACUNK4.08","synonyms":[{"name":"Spom972h-SPACUNK4.08","type":"exact"}],"termid":"PR:O14073"}


id: PBO:0110389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MSL complex subunit 3B","termid":"PBO:0110389"}


id: PBO:0048699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycosylated lysosomal membrane protein","termid":"PBO:0048699"}


id: GO:1902021
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of bacterial-type flagellum-dependent cell motility.","definition_xrefs":["GOC:jl","GOC:cilia","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell motility","termid":"GO:2000145"},{"relation_name":"regulates","term_name":"bacterial-type flagellum-dependent cell motility","termid":"GO:0071973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of bacterial-type flagellum-dependent cell motility","synonyms":[{"name":"regulation of bacterial-type flagellar cell motility","type":"related"},{"name":"regulation of bacterial-type flagellum cell motility","type":"exact"},{"name":"regulation of flagellin-based flagellar cell motility","type":"exact"}],"termid":"GO:1902021"}


id: PBO:0027143
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-spores_resistant_to_ionizing_radiation","termid":"PBO:0027143"}


id: PBO:0062719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 51 subfamily Q member 1","termid":"PBO:0062719"}


id: GO:0106244
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 8beta-hydroxygermacra-1(10),4,11(13)-trien-12-oate + O2 + reduced [NADPH--hemoprotein reductase] = eupatolide + 2 H2O + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["GOC:eab","PMID:29758164","RHEA:57972"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"eupatolide synthase activity","secondary_identifiers":["EC:1.14.14.169"],"termid":"GO:0106244"}


id: PBO:0042146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine ligand 4 like 2","termid":"PBO:0042146"}


id: PBO:0076068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm-tail PG-rich repeat containing 4","termid":"PBO:0076068"}


id: PBO:0062623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 11 subfamily G member 2","termid":"PBO:0062623"}


id: PBO:0036246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy/CVT pathway ENTH/VHS domain protein Irs4 (predicted)","termid":"PBO:0036246"}


id: PBO:0045437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPY19L2 pseudogene 5","termid":"PBO:0045437"}


id: PBO:0054260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1645","termid":"PBO:0054260"}


id: PBO:0086106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for assembly of succinate dehydrogenase; interacts with flavinylated Sdh1p and may function as a chaperone for free Sdh1p, protecting its FAD cofactor from redox reactions before assembly of the complex; soluble protein of the mitochondrial matrix; respiratory defect of null mutant is functionally complemented by Drosophila and human orthologs","termid":"PBO:0086106"}


id: GO:0001703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A gastrulation process in which the initial invagination becomes the mouth and the anus forms second.","definition_xrefs":["GOC:go_curators","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gastrulation","termid":"GO:0007369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"gastrulation with mouth forming first","synonyms":[{"name":"protostomic gastrulation","type":"narrow"}],"termid":"GO:0001703"}


id: PBO:0074904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 76","termid":"PBO:0074904"}


id: PBO:0077468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 187","termid":"PBO:0077468"}


id: GO:0046787
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of restoring viral DNA after damage or errors in replication.","definition_xrefs":["ISBN:0781718325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA repair","termid":"GO:0006281"},{"relation_name":"part_of","term_name":"viral process","termid":"GO:0016032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006281"}],"interesting_parent_ids":["GO:0006281","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"viral DNA repair","termid":"GO:0046787"}


id: GO:0032369
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipid transport","termid":"GO:0032368"},{"relation_name":"is_a","term_name":"negative regulation of transport","termid":"GO:0051051"},{"relation_name":"is_a","term_name":"negative regulation of lipid localization","termid":"GO:1905953"},{"relation_name":"negatively_regulates","term_name":"lipid transport","termid":"GO:0006869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of lipid transport","synonyms":[{"name":"down regulation of lipid transport","type":"exact"},{"name":"down-regulation of lipid transport","type":"exact"},{"name":"downregulation of lipid transport","type":"exact"},{"name":"inhibition of lipid transport","type":"narrow"}],"termid":"GO:0032369"}


id: GO:0051771
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a nitric-oxide synthase enzyme.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of macromolecule biosynthetic process","termid":"GO:0010558"},{"relation_name":"is_a","term_name":"regulation of nitric-oxide synthase biosynthetic process","termid":"GO:0051769"},{"relation_name":"negatively_regulates","term_name":"nitric-oxide synthase biosynthetic process","termid":"GO:0051767"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of nitric-oxide synthase biosynthetic process","secondary_identifiers":["GO:0051774"],"synonyms":[{"name":"negative regulation of NOS2 synthase biosynthetic process","type":"narrow"},{"name":"down regulation of nitric-oxide synthase 2 biosynthetic process","type":"narrow"},{"name":"down regulation of nitric-oxide synthase biosynthetic process","type":"exact"},{"name":"down-regulation of nitric-oxide synthase 2 biosynthetic process","type":"narrow"},{"name":"down-regulation of nitric-oxide synthase biosynthetic process","type":"exact"},{"name":"downregulation of nitric-oxide synthase 2 biosynthetic process","type":"narrow"},{"name":"downregulation of nitric-oxide synthase biosynthetic process","type":"exact"},{"name":"inhibition of nitric-oxide synthase 2 biosynthetic process","type":"narrow"},{"name":"inhibition of nitric-oxide synthase biosynthetic process","type":"narrow"},{"name":"negative regulation of NO synthase biosynthesis","type":"exact"},{"name":"negative regulation of NO synthase biosynthetic process","type":"exact"},{"name":"negative regulation of NOS biosynthesis","type":"exact"},{"name":"negative regulation of NOS biosynthetic process","type":"exact"},{"name":"negative regulation of NOS2 synthase biosynthesis","type":"narrow"},{"name":"negative regulation of nitric-oxide synthase (type 2) biosynthesis","type":"narrow"},{"name":"negative regulation of nitric-oxide synthase (type 2) biosynthetic process","type":"narrow"},{"name":"negative regulation of nitric-oxide synthase (type II) biosynthesis","type":"narrow"},{"name":"negative regulation of nitric-oxide synthase (type II) biosynthetic process","type":"narrow"},{"name":"negative regulation of nitric-oxide synthase 2 biosynthetic process","type":"narrow"}],"termid":"GO:0051771"}


id: PBO:0080726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WT1 interacting protein","termid":"PBO:0080726"}


id: GO:0023059
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The positive regulation of a signal transduction pathway in response to a stimulus upon prolonged exposure to that stimulus.","definition_xrefs":["GOC:mtg_signal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"adaptation of signaling pathway","termid":"GO:0023058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive adaptation of signaling pathway","synonyms":[{"name":"positive adaptation of signalling pathway","type":"exact"}],"termid":"GO:0023059"}


id: PBO:0030180
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_growth","termid":"PBO:0030180"}


id: PBO:0064784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase, Mg2+/Mn2+ dependent 1E","termid":"PBO:0064784"}


id: GO:1901445
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of response to propan-1-ol.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to alcohol","termid":"GO:1901419"},{"relation_name":"regulates","term_name":"response to propan-1-ol","termid":"GO:1901427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of response to propan-1-ol","termid":"GO:1901445"}


id: PBO:0065820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB5B, member RAS oncogene family","termid":"PBO:0065820"}


id: GO:0002472
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a macrophage expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex.","definition_xrefs":["GOC:add","PMID:15771591","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation","termid":"GO:0019882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"macrophage antigen processing and presentation","termid":"GO:0002472"}


id: MOD:01355
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3 hydrogen atom of a threonine residue with a carbohydrate-like group composed of Hex1HexNAc1NeuAc1 linked through a glycosidic bond.","definition_xrefs":["Unimod:149#T"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Hex1HexNAc1NeuAc1 glycosylated residue","termid":"MOD:00517"},{"relation_name":"is_a","term_name":"modified L-threonine residue","termid":"MOD:00917"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"Hex1HexNAc1NeuAc1O-glycosylated threonine","synonyms":[{"name":"Hex(1)HexNAc(1)NeuAc(1)","type":"related"},{"name":"Hex1HexNAc1NeuAc1","type":"related"}],"termid":"MOD:01355"}


id: PBO:0087176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II third largest subunit B44; part of central core; similar to prokaryotic alpha subunit","termid":"PBO:0087176"}


id: PBO:0065450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, ATPase, 6 pseudogene 1","termid":"PBO:0065450"}


id: PBO:0060750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B3","termid":"PBO:0060750"}


id: GO:0061311
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand the binding to its receptor on the surface of a cell, which contributes to the progression of the heart over time.","definition_xrefs":["GOC:dph","GOC:mtg_heart","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor signaling pathway","termid":"GO:0007166"},{"relation_name":"part_of","term_name":"heart development","termid":"GO:0007507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"cell surface receptor signaling pathway involved in heart development","synonyms":[{"name":"cell surface receptor linked signaling pathway involved in heart development","type":"exact"},{"name":"cell surface receptor linked signalling pathway involved in heart development","type":"exact"}],"termid":"GO:0061311"}


id: PBO:0061096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuroligin 1","termid":"PBO:0061096"}


id: PATO:0002312
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Consisting of segments or similar parts arranged in a longitudinal series.","direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"segmented","termid":"PATO:0002312"}


id: GO:0018411
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of a protein by amino acid glucuronidation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein glucuronidation","synonyms":[{"name":"protein amino acid glucuronidation","type":"exact"}],"termid":"GO:0018411"}


id: PBO:0000266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-coding RNA, poly(A)-bearing (predicted)","termid":"PBO:0000266"}


id: GO:1900804
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of brevianamide F.","definition_xrefs":["GOC:di","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete brevianamide F catabolic process (obsolete GO:1900804)","synonyms":[{"name":"L-prolyl-L-tryptophan anhydride breakdown","type":"related"},{"name":"L-prolyl-L-tryptophan anhydride catabolic process","type":"related"},{"name":"L-prolyl-L-tryptophan anhydride catabolism","type":"related"},{"name":"L-prolyl-L-tryptophan anhydride degradation","type":"related"},{"name":"L-tryptophyl-L-proline cyclic anhydride breakdown","type":"related"},{"name":"L-tryptophyl-L-proline cyclic anhydride catabolic process","type":"related"},{"name":"L-tryptophyl-L-proline cyclic anhydride catabolism","type":"related"},{"name":"L-tryptophyl-L-proline cyclic anhydride degradation","type":"related"},{"name":"brevianamide F breakdown","type":"exact"},{"name":"brevianamide F catabolism","type":"exact"},{"name":"brevianamide F degradation","type":"exact"},{"name":"cyclo-(Trp-Pro) breakdown","type":"related"},{"name":"cyclo-(Trp-Pro) catabolic process","type":"related"},{"name":"cyclo-(Trp-Pro) catabolism","type":"related"},{"name":"cyclo-(Trp-Pro) degradation","type":"related"},{"name":"cyclo-L-Trp-L-Pro breakdown","type":"related"},{"name":"cyclo-L-Trp-L-Pro catabolic process","type":"related"},{"name":"cyclo-L-Trp-L-Pro catabolism","type":"related"},{"name":"cyclo-L-Trp-L-Pro degradation","type":"related"},{"name":"cyclo-L-tryptophanyl-L-proline breakdown","type":"related"},{"name":"cyclo-L-tryptophanyl-L-proline catabolic process","type":"related"},{"name":"cyclo-L-tryptophanyl-L-proline catabolism","type":"related"},{"name":"cyclo-L-tryptophanyl-L-proline degradation","type":"related"},{"name":"tryptophan-proline diketopiperazine breakdown","type":"related"},{"name":"tryptophan-proline diketopiperazine catabolic process","type":"related"},{"name":"tryptophan-proline diketopiperazine catabolism","type":"related"},{"name":"tryptophan-proline diketopiperazine degradation","type":"related"}],"termid":"GO:1900804"}


id: PBO:0005506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pig-K","termid":"PBO:0005506"}


id: GO:0052468
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The alteration by an organism of the levels of salicylic acid in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by organism of salicylic acid levels in symbiont (obsolete GO:0052468)","synonyms":[{"name":"modulation by organism of salicylic acid levels in symbiont","type":"exact"}],"termid":"GO:0052468"}


id: GO:0090700
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the identity of a plant organ is maintained. Identity is considered to be the aggregate of characteristics by which a structure is recognized.","definition_xrefs":["GOC:tb","PMID:9090883"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell differentiation","termid":"GO:0045596"},{"relation_name":"part_of","term_name":"plant organ development","termid":"GO:0099402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maintenance of plant organ identity","termid":"GO:0090700"}


id: PBO:0056778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase like 27","termid":"PBO:0056778"}


id: GO:0035771
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by interleukin-4 binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:BHF","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"},{"relation_name":"part_of","term_name":"cellular response to interleukin-4","termid":"GO:0071353"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"interleukin-4-mediated signaling pathway","synonyms":[{"name":"IL-4-mediated signaling pathway","type":"exact"},{"name":"interleukin-4-mediated signalling pathway","type":"exact"}],"termid":"GO:0035771"}


id: PBO:0056788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microfibril associated protein 4","termid":"PBO:0056788"}


id: FYPO:0006579
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to manganese. Cells stop growing (and may die) at a concentration of manganese ions that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002683","FYPO:0001985","FYPO:0000003","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to manganese","synonyms":[{"name":"hypersensitive to manganese","type":"exact"},{"name":"sensitive to manganese during mitotic cell cycle","type":"related"},{"name":"sensitive to manganese during vegetative growth","type":"exact"},{"name":"sensitive to manganese ions","type":"exact"}],"termid":"FYPO:0006579"}


id: GO:1900872
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving pentadec-1-ene.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular alkene metabolic process","termid":"GO:0043449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pentadec-1-ene metabolic process","synonyms":[{"name":"pentadec-1-ene metabolism","type":"exact"}],"termid":"GO:1900872"}


id: PBO:0029081
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_spindle_pole_body","termid":"PBO:0029081"}


id: PBO:0063205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PCBP2 pseudogene 1","termid":"PBO:0063205"}


id: PBO:0113346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for delivery of copper to Cox1p; mitochondrial inner membrane protein; involved in oxidative stress response; association with mitochondrial ribosomes suggests that copper delivery may occur during translation of Cox1p","termid":"PBO:0113346"}


id: SO:0000656
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region that can be transcribed into a small temporal RNA (stRNA). Found in roundworm development.","direct_ancestors":[{"relation_name":"is_a","term_name":"non_protein_coding","termid":"SO:0000011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stRNA_encoding","synonyms":[{"name":"stRNA encoding","type":"exact"}],"termid":"SO:0000656"}


id: PBO:0078798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (anticodon GTT) 16-5","termid":"PBO:0078798"}


id: MOD:01249
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that is produced by reaction of iodouridine monophosphate with an L-tryptophan residue.","definition_xrefs":["PubMed:11112526","PubMed:6540775","PubMed:11567090","Unimod:292#W"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iodouridine monophosphate derivatized residue","termid":"MOD:00611"},{"relation_name":"is_a","term_name":"modified L-tryptophan residue","termid":"MOD:00918"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iodouridine monophosphate derivatized tryptophan","synonyms":[{"name":"Cross-link of (Iodo)-uracil MP with W,F,Y","type":"related"},{"name":"IodoU-AMP","type":"related"}],"termid":"MOD:01249"}


id: PBO:0066141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RB associated KRAB zinc finger","termid":"PBO:0066141"}


id: PBO:0057357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548aa-2","termid":"PBO:0057357"}


id: PBO:0057912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3615","termid":"PBO:0057912"}


id: PATO:0000427
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly.","definition_xrefs":["thefreedictionary.com:thefreedictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"occurrence","termid":"PATO:0000057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recurrent","termid":"PATO:0000427"}


id: PBO:0061030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ninjurin 1","termid":"PBO:0061030"}


id: PBO:0066733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 30","termid":"PBO:0066733"}


id: PBO:0085235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pentafunctional arom protein; catalyzes steps 2 through 6 in the biosynthesis of chorismate, which is a precursor to aromatic amino acids","termid":"PBO:0085235"}


id: GO:0038190
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by vascular endothelial growth factor (VEGF) binding to a neuropilin protein on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:12852851","GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular endothelial growth factor signaling pathway","termid":"GO:0038084"},{"relation_name":"is_a","term_name":"neuropilin signaling pathway","termid":"GO:0038189"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"VEGF-activated neuropilin signaling pathway","synonyms":[{"name":"VEGF-Npn-1 signaling","type":"exact"},{"name":"vascular endothelial growth factor-activated neuropilin signaling pathway","type":"exact"}],"termid":"GO:0038190"}


id: GO:0018344
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent attachment of a geranylgeranyl group to a protein.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein prenylation","termid":"GO:0018342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein geranylgeranylation","secondary_identifiers":["GO:0018348"],"synonyms":[{"name":"C-terminal protein geranylgeranylation","type":"narrow"},{"name":"protein amino acid geranylgeranylation","type":"exact"}],"termid":"GO:0018344"}


id: GO:0043171
data:
  {"annotated_genes":["SJAG_01088","SJAG_01430","SJAG_00181"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97068,101751,110452],"is_not":false,"summary":null,"term":"GO:0043171"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide metabolic process","termid":"GO:0006518"},{"relation_name":"is_a","term_name":"cellular catabolic process","termid":"GO:0044248"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00181":null,"SJAG_01088":null,"SJAG_01430":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044248"],"is_obsolete":false,"name":"peptide catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"peptide breakdown","type":"exact"},{"name":"peptide catabolism","type":"exact"},{"name":"peptide degradation","type":"exact"}],"termid":"GO:0043171","terms_by_termid":{"GO:0043171":null}}


id: PR:000030002
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine/threonine-protein kinase Chk2 that is encoded in the genome of Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase cds1 (Schizosaccharomyces pombe)","pombase_gene_id":"SPCC18B5.11c","synonyms":[{"name":"Spom-CHEK2","type":"exact"}],"termid":"PR:000030002"}


id: PBO:0044025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"casein kinase 2 beta","termid":"PBO:0044025"}


id: PBO:0062530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily V member 1 pseudogene","termid":"PBO:0062530"}


id: PBO:0053820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1081","termid":"PBO:0053820"}


id: PBO:0031444
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_elongated_vegetative_cell_with_central_constriction","termid":"PBO:0031444"}


id: GO:0050060
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a long-chain alcohol + 2 NAD+ + H2O = a long-chain carboxylate + 2 NADH.","definition_xrefs":["EC:1.1.1.192","MetaCyc:LONG-CHAIN-ALCOHOL-DEHYDROGENASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"long-chain-alcohol dehydrogenase activity","secondary_identifiers":["RHEA:17977"],"synonyms":[{"name":"fatty alcohol oxidoreductase activity","type":"related"},{"name":"long-chain alcohol dehydrogenase activity","type":"related"},{"name":"long-chain-alcohol:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0050060"}


id: PBO:0000118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hexose transporter Ght3","termid":"PBO:0000118"}


id: PR:P87051
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peptidyl-prolyl cis-trans isomerase-like 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11071:SF41","PRO:DNx","OMA:SCHPO00551"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidyl-prolyl cis-trans isomerase ppi1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC57A10.03","secondary_identifiers":["UniProtKB:P87051"],"synonyms":[{"name":"PPIase ppi1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PPIL1","type":"exact"},{"name":"cyclophilin ppi1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"rotamase ppi1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87051"}


id: GO:0043570
data:
  {"annotated_genes":["SJAG_05237","SJAG_05180","SJAG_02226","SJAG_01832","SJAG_01050","SJAG_02748","SJAG_02187","SJAG_03997","SJAG_04816","SJAG_01419","SJAG_03898","SJAG_00247","SJAG_04855","SJAG_04671"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87804,96602,102063,103752,112454],"is_not":false,"summary":null,"term":"GO:0043570"},{"annotations":[97192,113159,95305,92055],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043007"},{"annotations":[100432],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045458"},{"annotations":[99240],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1902681"},{"annotations":[95385,111025,98298],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031582"}]},"cv_name":"biological_process","definition":"Any process involved in sustaining the fidelity and copy number of DNA repeat elements.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA metabolic process","termid":"GO:0006259"},{"relation_name":"is_a","term_name":"chromosome organization","termid":"GO:0051276"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00247":null,"SJAG_01050":null,"SJAG_01419":null,"SJAG_01832":null,"SJAG_02187":null,"SJAG_02226":null,"SJAG_02748":null,"SJAG_03898":null,"SJAG_03997":null,"SJAG_04671":null,"SJAG_04816":null,"SJAG_04855":null,"SJAG_05180":null,"SJAG_05237":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"maintenance of DNA repeat elements","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0043570","terms_by_termid":{"GO:0031582":null,"GO:0043007":null,"GO:0043570":null,"GO:0045458":null,"GO:1902681":null}}


id: PBO:0062846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OSTM1 antisense RNA 1","termid":"PBO:0062846"}


id: GO:0102468
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-alpha-D-glucuronate + wogonin = UDP + wogonin 7-O-beta-D-glucuronate + H+.","definition_xrefs":["EC:2.4.1.253","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016757","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"wogonin 7-O-glucuronosyltransferase activity","secondary_identifiers":["RHEA:28322","MetaCyc:RXN-14060"],"termid":"GO:0102468"}


id: GO:0060677
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental growth in which the ureteric bud grows along its axis beginning with the growth of the primary ureteric bud and ending when the branches of the bud have elongated.","definition_xrefs":["PMID:16916378","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental growth involved in morphogenesis","termid":"GO:0060560"},{"relation_name":"part_of","term_name":"ureteric bud morphogenesis","termid":"GO:0060675"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ureteric bud elongation","termid":"GO:0060677"}


id: PBO:0088565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis ATPase, Arb family ABCF2-like","termid":"PBO:0088565"}


id: PATO:0001994
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A cellularity quality inhering in a bearer by virtue of the bearer's consisting of exactly one cell.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellularity","termid":"PATO:0001992"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unicellular","termid":"PATO:0001994"}


id: PBO:0048718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutaredoxin pseudogene 1","termid":"PBO:0048718"}


id: PBO:0059344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S10 pseudogene 5","termid":"PBO:0059344"}


id: PATO:0002138
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be eaten.","definition_xrefs":["PATOC:VO"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"edibility","synonyms":[{"name":"edibleness","type":"exact"}],"termid":"PATO:0002138"}


id: GO:0090557
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The establishment of a barrier between endothelial cell layers of the intestine to exert specific and selective control over the passage of water and solutes, thus allowing formation and maintenance of compartments that differ in fluid and solute composition.","definition_xrefs":["PMID:22155109","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of endothelial barrier","termid":"GO:0061028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"establishment of endothelial intestinal barrier","termid":"GO:0090557"}


id: PR:O43006
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug178 gene.","definition_xrefs":["UniProtKB:O43006","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 178 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2G2.07c","synonyms":[{"name":"Spom972h-mug178","type":"exact"}],"termid":"PR:O43006"}


id: PBO:0044466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 4 subfamily Z member 1","termid":"PBO:0044466"}


id: PBO:0039988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 6 interacting protein 1 pseudogene 2","termid":"PBO:0039988"}


id: GO:0052135
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of environmental oxygen within its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete negative aerotaxis in host (obsolete GO:0052135)","synonyms":[{"name":"negative aerotaxis within host","type":"exact"}],"termid":"GO:0052135"}


id: PBO:0074184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 38 member 5","termid":"PBO:0074184"}


id: PBO:0049178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GREB1 like retinoic acid receptor coactivator","termid":"PBO:0049178"}


id: PBO:0080215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vimentin","termid":"PBO:0080215"}


id: PBO:0062292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily M member 3","termid":"PBO:0062292"}


id: PBO:0040317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase F1 subunit beta pseudogene 1","termid":"PBO:0040317"}


id: PBO:0079705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquilin 1","termid":"PBO:0079705"}


id: PR:O94688
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- apc15 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94688"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase-promoting complex subunit 15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC83.04","synonyms":[{"name":"20S cyclosome/APC complex protein apc15 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-apc15","type":"exact"}],"termid":"PR:O94688"}


id: PBO:0072842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sin3A associated protein 130","termid":"PBO:0072842"}


id: PBO:0074827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 23","termid":"PBO:0074827"}


id: GO:0033256
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex containing an inhibitory-kappaB (I-kappaB/IKB) protein and one or more copies of an NF-kappaB protein. In the resting state, NF-kappaB dimers are bound to I-kappaB proteins, sequestering NF-kappaB in the cytoplasm.","definition_xrefs":["GOC:mah","GOC:bf","PMID:9407099"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"I-kappaB/NF-kappaB complex","termid":"GO:0033256"}


id: MOD:01322
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Other -","definition_xrefs":["PubMed:15549660","Unimod:256#K"],"direct_ancestors":[{"relation_name":"is_a","term_name":"propionaldehyde +40","termid":"MOD:00579"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"propionaldehyde +40 - site K","synonyms":[{"name":"Delta:H(4)C(3)","type":"related"},{"name":"Propionaldehyde +40","type":"related"}],"termid":"MOD:01322"}


id: GO:0020036
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A disk-like structure that appears at the periphery of a red blood cell infected by an apicomplexan parasite, characterized by a translucent lumen and an electron-dense coat of variable thickness; often appears to be tethered to the host cell membrane by fibrous connections with the erythrocyte cytoskeleton.","definition_xrefs":["PMID:16705161"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell cytoplasm part","termid":"GO:0033655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"Maurer's cleft","synonyms":[{"name":"Maurers cleft","type":"exact"}],"termid":"GO:0020036"}


id: GO:0009221
data:
  {"annotated_genes":["SJAG_02874","SJAG_04627","SJAG_00885","SJAG_04657","SJAG_03771","SJAG_04665","SJAG_04487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103261,88480,91532],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006240"},{"annotations":[114014],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006233"},{"annotations":[104376,85443],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006231"},{"annotations":[85444,114015,88481],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006235"},{"annotations":[114016],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006227"},{"annotations":[95011,104377],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006226"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a pyrimidine deoxyribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleotide biosynthetic process","termid":"GO:0006221"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleotide metabolic process","termid":"GO:0009219"},{"relation_name":"is_a","term_name":"2'-deoxyribonucleotide biosynthetic process","termid":"GO:0009265"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00885":null,"SJAG_02874":null,"SJAG_03771":null,"SJAG_04487":null,"SJAG_04627":null,"SJAG_04657":null,"SJAG_04665":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"pyrimidine deoxyribonucleotide biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PWY0-166"],"synonyms":[{"name":"pyrimidine deoxyribonucleotide anabolism","type":"exact"},{"name":"pyrimidine deoxyribonucleotide biosynthesis","type":"exact"},{"name":"pyrimidine deoxyribonucleotide formation","type":"exact"},{"name":"pyrimidine deoxyribonucleotide synthesis","type":"exact"}],"termid":"GO:0009221","terms_by_termid":{"GO:0006226":null,"GO:0006227":null,"GO:0006231":null,"GO:0006233":null,"GO:0006235":null,"GO:0006240":null}}


id: PBO:0050109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1 pseudogene 19","termid":"PBO:0050109"}


id: PBO:0051253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable (III)-16-1 (pseudogene)","termid":"PBO:0051253"}


id: PBO:0038287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase feature property types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"charge_at_ph7","termid":"PBO:0038287"}


id: PR:O94425
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC660.05 gene.","definition_xrefs":["UniProtKB:O94425","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WW domain-containing protein C660.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC660.05","synonyms":[{"name":"Spom972h-SPBC660.05","type":"exact"}],"termid":"PR:O94425"}


id: PBO:0092039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfonate/alpha-ketoglutarate dioxygenase","termid":"PBO:0092039"}


id: PBO:0058538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6083","termid":"PBO:0058538"}


id: PBO:0067569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 724, pseudogene","termid":"PBO:0067569"}


id: GO:0097342
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex whose core components are the receptor-interacting serine/threonine-protein kinases RIPK1 and RIPK3 (also called RIP1 and RIP3). Formation of the ripoptosome can induce an extrinsic apoptotic signaling pathway or a necroptotic signaling pathway. The composition of this protein complex may depend on several factors including nature of the signal, cell type and more.","definition_xrefs":["GOC:bhm","GOC:mtg_apoptosis","PMID:22265414","PMID:22274400"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991","GO:0005829"],"is_obsolete":false,"name":"ripoptosome","synonyms":[{"name":"TNFR1 complex II","type":"narrow"},{"name":"Tnfr1-CII","type":"narrow"},{"name":"necrosome","type":"related"}],"termid":"GO:0097342"}


id: PBO:0051703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"INPP5B antisense RNA 1","termid":"PBO:0051703"}


id: PBO:0079910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UQCRFS1 divergent transcript","termid":"PBO:0079910"}


id: PBO:0082789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the TREX complex required for nuclear mRNA export; member of the DEAD-box RNA helicase superfamily and is involved in early and late steps of spliceosome assembly; homolog of the human splicing factor hUAP56; relocalizes from nucleus to cytoplasm upon DNA replication stress","termid":"PBO:0082789"}


id: PR:O13787
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sec62 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13787"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocation protein sec62 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17G6.09","synonyms":[{"name":"Spom972h-sec62","type":"exact"}],"termid":"PR:O13787"}


id: PBO:0063262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin beta 8","termid":"PBO:0063262"}


id: PBO:0056331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase kinase kinase 12","termid":"PBO:0056331"}


id: PBO:0055495
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2929","termid":"PBO:0055495"}


id: GO:0071460
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of cell-matrix adhesion.","definition_xrefs":["GOC:sl","PMID:11425869"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to stimulus","termid":"GO:0051716"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to cell-matrix adhesion","termid":"GO:0071460"}


id: FYPO:0000029
data:
  {"alleles_by_uniquename":{"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03449:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"man1DHEH","gene_uniquename":"SJAG_03449","name":"Man1DHEH","uniquename":"SJAG_03449:allele-2"},"SJAG_03449:allele-3":{"allele_type":"amino_acid_insertion_and_deletion","description":"man1-1-488","gene_uniquename":"SJAG_03449","name":"man1-1-488","uniquename":"SJAG_03449:allele-3"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115173,115174,115172],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"FYPO:0000671"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which chromosome segregation is abnormal. Chromosome segregation begins with the alignment of chromosomes at the metaphase plate, includes sister chromatid separation, and ends when chromosomes have completed movement to the spindle poles.","definition_xrefs":["PomBase:mah","GO:0007059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell cycle process","termid":"FYPO:0002734"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03449":null},"genotype_count":3,"genotypes_by_uniquename":{"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Man1DHEH(man1DHEH)","display_uniquename":"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-2","expression":"Not assayed or wild type"}]}]},"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type":{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]},"man1delta":{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal chromosome segregation","references_by_uniquename":{"PMID:24184107":null},"secondary_identifiers":["FYPO:0000226"],"single_locus_annotated_genes":["SJAG_03449"],"single_locus_genotype_uniquenames":["Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","man1delta","man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"centromere function defective","type":"related"},{"name":"chromosome missegregation","type":"related"},{"name":"chromosome segregation defects","type":"exact"},{"name":"chromosome segregation: abnormal","type":"related"}],"termid":"FYPO:0000029","terms_by_termid":{"FYPO:0000671":null}}


id: PBO:0041888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cation channel sperm associated auxiliary subunit delta","termid":"PBO:0041888"}


id: GO:0016309
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 1-phosphatidyl-1D-myo-inositol 5-phosphate + ATP = a 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + ADP + H+.","definition_xrefs":["EC:2.7.1.149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol kinase activity","termid":"GO:0052742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016740","GO:0016301","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"1-phosphatidylinositol-5-phosphate 4-kinase activity","secondary_identifiers":["Reactome:R-HSA-6811522","MetaCyc:2.7.1.149-RXN","Reactome:R-HSA-1675776","RHEA:12280"],"synonyms":[{"name":"1-phosphatidylinositol-5-phosphate kinase","type":"broad"},{"name":"ATP:1-phosphatidyl-1D-myo-inositol-5-phosphate 4-phosphotransferase activity","type":"related"},{"name":"PIP4K","type":"exact"},{"name":"type II PIP kinase activity","type":"narrow"}],"termid":"GO:0016309"}


id: PR:O60121
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A stomatin-like protein 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04040","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C16G5.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16G5.07c","secondary_identifiers":["UniProtKB:O60121"],"synonyms":[{"name":"Spom972h-STOML2","type":"exact"}],"termid":"PR:O60121"}


id: PBO:0067484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 618, pseudogene","termid":"PBO:0067484"}


id: GO:0035763
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the dorsal motor nucleus of the vagus nerve. This process pertains to the physical shaping of a rudimentary structure.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure arrangement","termid":"GO:0048532"},{"relation_name":"part_of","term_name":"dorsal motor nucleus of vagus nerve morphogenesis","termid":"GO:0035762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dorsal motor nucleus of vagus nerve structural organization","synonyms":[{"name":"dorsal motor nucleus of vagus nerve structural organisation","type":"exact"}],"termid":"GO:0035763"}


id: PBO:0002294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin Kap104","termid":"PBO:0002294"}


id: GO:1903657
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of type IV pilus biogenesis.","definition_xrefs":["GOC:TermGenie","PMID:25049409","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell projection organization","termid":"GO:0031345"},{"relation_name":"is_a","term_name":"regulation of type IV pilus biogenesis","termid":"GO:1903656"},{"relation_name":"negatively_regulates","term_name":"type IV pilus assembly","termid":"GO:0043683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"negative regulation of type IV pilus biogenesis","synonyms":[{"name":"down regulation of TFP biogenesis","type":"exact"},{"name":"down regulation of type 4 pilus biogenesis","type":"exact"},{"name":"down regulation of type IV fimbria assembly","type":"exact"},{"name":"down regulation of type IV fimbria biogenesis","type":"exact"},{"name":"down regulation of type IV fimbriae assembly","type":"exact"},{"name":"down regulation of type IV fimbriae biogenesis","type":"exact"},{"name":"down regulation of type IV fimbrial assembly","type":"exact"},{"name":"down regulation of type IV fimbrial biogenesis","type":"exact"},{"name":"down regulation of type IV fimbrium assembly","type":"exact"},{"name":"down regulation of type IV fimbrium biogenesis","type":"exact"},{"name":"down regulation of type IV pilus biogenesis","type":"exact"},{"name":"down regulation of type IV pilus biosynthesis","type":"exact"},{"name":"down-regulation of TFP biogenesis","type":"exact"},{"name":"down-regulation of type 4 pilus biogenesis","type":"exact"},{"name":"down-regulation of type IV fimbria assembly","type":"exact"},{"name":"down-regulation of type IV fimbria biogenesis","type":"exact"},{"name":"down-regulation of type IV fimbriae assembly","type":"exact"},{"name":"down-regulation of type IV fimbriae biogenesis","type":"exact"},{"name":"down-regulation of type IV fimbrial assembly","type":"exact"},{"name":"down-regulation of type IV fimbrial biogenesis","type":"exact"},{"name":"down-regulation of type IV fimbrium assembly","type":"exact"},{"name":"down-regulation of type IV fimbrium biogenesis","type":"exact"},{"name":"down-regulation of type IV pilus biogenesis","type":"exact"},{"name":"down-regulation of type IV pilus biosynthesis","type":"exact"},{"name":"downregulation of TFP biogenesis","type":"exact"},{"name":"downregulation of type 4 pilus biogenesis","type":"exact"},{"name":"downregulation of type IV fimbria assembly","type":"exact"},{"name":"downregulation of type IV fimbria biogenesis","type":"exact"},{"name":"downregulation of type IV fimbriae assembly","type":"exact"},{"name":"downregulation of type IV fimbriae biogenesis","type":"exact"},{"name":"downregulation of type IV fimbrial assembly","type":"exact"},{"name":"downregulation of type IV fimbrial biogenesis","type":"exact"},{"name":"downregulation of type IV fimbrium assembly","type":"exact"},{"name":"downregulation of type IV fimbrium biogenesis","type":"exact"},{"name":"downregulation of type IV pilus biogenesis","type":"exact"},{"name":"downregulation of type IV pilus biosynthesis","type":"exact"},{"name":"inhibition of TFP biogenesis","type":"narrow"},{"name":"inhibition of type 4 pilus biogenesis","type":"narrow"},{"name":"inhibition of type IV fimbria assembly","type":"narrow"},{"name":"inhibition of type IV fimbria biogenesis","type":"narrow"},{"name":"inhibition of type IV fimbriae assembly","type":"narrow"},{"name":"inhibition of type IV fimbriae biogenesis","type":"narrow"},{"name":"inhibition of type IV fimbrial assembly","type":"narrow"},{"name":"inhibition of type IV fimbrial biogenesis","type":"narrow"},{"name":"inhibition of type IV fimbrium assembly","type":"narrow"},{"name":"inhibition of type IV fimbrium biogenesis","type":"narrow"},{"name":"inhibition of type IV pilus biogenesis","type":"narrow"},{"name":"inhibition of type IV pilus biosynthesis","type":"narrow"},{"name":"negative regulation of TFP biogenesis","type":"exact"},{"name":"negative regulation of type 4 pilus biogenesis","type":"exact"},{"name":"negative regulation of type IV fimbria assembly","type":"exact"},{"name":"negative regulation of type IV fimbria biogenesis","type":"exact"},{"name":"negative regulation of type IV fimbriae assembly","type":"exact"},{"name":"negative regulation of type IV fimbriae biogenesis","type":"exact"},{"name":"negative regulation of type IV fimbrial assembly","type":"exact"},{"name":"negative regulation of type IV fimbrial biogenesis","type":"exact"},{"name":"negative regulation of type IV fimbrium assembly","type":"exact"},{"name":"negative regulation of type IV fimbrium biogenesis","type":"exact"},{"name":"negative regulation of type IV pilus biosynthesis","type":"exact"}],"termid":"GO:1903657"}


id: SO:0000456
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that is recombinationally rearranged.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"recombinationally_rearranged","termid":"SO:0000940"},{"relation_name":"is_a","term_name":"gene","termid":"SO:0000704"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recombinationally_rearranged_gene","synonyms":[{"name":"recombinationally rearranged gene","type":"exact"}],"termid":"SO:0000456"}


id: GO:0030773
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 6-hydroxymellein + S-adenosyl-L-methionine = 6-methoxymellein + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["EC:2.1.1.108","RHEA:15201"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016741","GO:0003824"],"is_obsolete":false,"name":"6-hydroxymellein O-methyltransferase activity","secondary_identifiers":["KEGG_REACTION:R03934","MetaCyc:6-HYDROXYMELLEIN-O-METHYLTRANSFERASE-RXN"],"synonyms":[{"name":"6-hydroxymellein methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:6-hydroxymellein 6-O-methyltransferase activity","type":"related"}],"termid":"GO:0030773"}


id: PR:Q09150
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A WD repeat-containing protein 61 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03420","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic recombination protein rec14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC32F12.02","secondary_identifiers":["UniProtKB:Q09150"],"synonyms":[{"name":"Spom972h-WDR61","type":"exact"}],"termid":"PR:Q09150"}


id: PBO:0029549
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_level_of_nitrogen_starvation_gene_mRNA_during_vegetative_growth","termid":"PBO:0029549"}


id: PBO:0083801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein required for the DNA integrity checkpoint pathways; interacts physically with Mec1p and contributes to its activation; putative homolog of S. pombe Rad26 and human ATRIP; forms nuclear foci upon DNA replication stress","termid":"PBO:0083801"}


id: PR:Q9UTN7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug95 gene.","definition_xrefs":["UniProtKB:Q9UTN7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 95 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1250.02","synonyms":[{"name":"Spom972h-mug95","type":"exact"}],"termid":"PR:Q9UTN7"}


id: SO:0001216
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An intron that spliced via endonucleolytic cleavage and ligation rather than transesterification.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intron","termid":"SO:0000188"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endonuclease_spliced_intron","synonyms":[{"name":"endonuclease spliced intron","type":"exact"}],"termid":"SO:0001216"}


id: PBO:0085332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphatidylinositol transfer protein (PITP); downregulates Plb1p-mediated turnover of phosphatidylcholine; forms a complex with Psd2p which appears essential for maintenance of vacuolar PE levels; found in the cytosol and microsomes; homologous to Pdr16p; deletion affects phospholipid composition","termid":"PBO:0085332"}


id: GO:0071979
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell motility in which contractile cytoskeletal elements alter cell shape, resulting in the smooth movement of a cell through a liquid medium.","definition_xrefs":["PMID:18461074"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell swimming","termid":"GO:0071975"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cytoskeleton-mediated cell swimming","synonyms":[{"name":"cytoskeleton-mediated swimming motility","type":"exact"}],"termid":"GO:0071979"}


id: PBO:0079895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquinol-cytochrome c reductase complex assembly factor 4","termid":"PBO:0079895"}


id: PBO:0055460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2893","termid":"PBO:0055460"}


id: GO:0042310
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A decrease in the diameter of blood vessels, especially arteries, due to constriction of smooth muscle cells that line the vessels, and usually causing an increase in blood pressure.","definition_xrefs":["ISBN:0192800752","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"blood vessel diameter maintenance","termid":"GO:0097746"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vasoconstriction","secondary_identifiers":["Wikipedia:Vasoconstriction","GO:0045908"],"synonyms":[{"name":"negative regulation of blood vessel size","type":"exact"}],"termid":"GO:0042310"}


id: PBO:0087503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of Golgi mannosyltransferase complex; this complex mediates elongation of the polysaccharide mannan backbone; forms a separate complex with Van1p that is also involved in backbone elongation; this complex also contains Anp1p, Mnn10p, Mnn11p, and Hoc1p","termid":"PBO:0087503"}


id: GO:0140214
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of long-chain fatty acid import into a cell.","definition_xrefs":["PMID:28178239"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of long-chain fatty acid import into cell","termid":"GO:0140212"},{"relation_name":"is_a","term_name":"positive regulation of fatty acid transport","termid":"GO:2000193"},{"relation_name":"positively_regulates","term_name":"long-chain fatty acid import into cell","termid":"GO:0044539"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of long-chain fatty acid import into cell","termid":"GO:0140214"}


id: PATO:0000778
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000778 short term memory value (obsolete PATO:0000778)","termid":"PATO:0000778"}


id: PBO:0061659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NUMB like endocytic adaptor protein","termid":"PBO:0061659"}


id: GO:0031493
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a histone that is assembled into a nucleosome.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete nucleosomal histone binding (obsolete GO:0031493)","termid":"GO:0031493"}


id: GO:0047709
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: bis(2-ethylhexyl)phthalate + H2O = 2-ethylhexan-1-ol + 2-ethylhexyl phthalate + H+.","definition_xrefs":["EC:3.1.1.60","RHEA:15529"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016788"],"is_obsolete":false,"name":"bis(2-ethylhexyl)phthalate esterase activity","secondary_identifiers":["MetaCyc:BIS2-ETHYLHEXYLPHTHALATE-ESTERASE-RXN","KEGG_REACTION:R04202"],"synonyms":[{"name":"DEHP esterase activity","type":"related"},{"name":"bis(2-ethylhexyl)phthalate acylhydrolase activity","type":"related"}],"termid":"GO:0047709"}


id: GO:1900055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of leaf senescence.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"regulates","term_name":"leaf senescence","termid":"GO:0010150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of leaf senescence","termid":"GO:1900055"}


id: PBO:0017563
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nonprogressive congenital ataxia","termid":"PBO:0017563"}


id: PBO:0041757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CAP1 pseudogene 2","termid":"PBO:0041757"}


id: PBO:0087935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Translational elongation factor EF-1 alpha; GTP-bound active form, binds to and delivers aminoacylated tRNA to the A-site of ribosomes for elongation of nascent polypeptides; moonlighting function as an actin binding and bundling protein; association with GTPase Rho1p on the vacuolar membrane may facilitate F-actin remodeling; involved in tRNA re-export from the nucleus; Tef2p-RFP levels increase during replicative aging","termid":"PBO:0087935"}


id: GO:0034110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of homotypic cell-cell adhesion.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell-cell adhesion","termid":"GO:0022407"},{"relation_name":"regulates","term_name":"homotypic cell-cell adhesion","termid":"GO:0034109"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"regulation of homotypic cell-cell adhesion","termid":"GO:0034110"}


id: PBO:0052806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 73","termid":"PBO:0052806"}


id: GO:0032190
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to acrosin, a protein that is found in the acrosomes of sperm and possesses protease and carbohydrate binding activities.","definition_xrefs":["GOC:mah","PMID:12398221"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme binding","termid":"GO:0019899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"acrosin binding","secondary_identifiers":["GO:0032192","GO:0032191"],"synonyms":[{"name":"acrosin heavy chain binding","type":"narrow"},{"name":"acrosin light chain binding","type":"narrow"}],"termid":"GO:0032190"}


id: PBO:0064139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase, membrane associated tyrosine/threonine 1","termid":"PBO:0064139"}


id: GO:0019040
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete viral host shutoff protein (obsolete GO:0019040)","synonyms":[{"name":"viral host shutoff protein","type":"exact"}],"termid":"GO:0019040"}


id: PBO:0071361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L29 pseudogene 20","termid":"PBO:0071361"}


id: GO:0043543
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of an acyl group, any group or radical of the form RCO- where R is an organic group, to a protein amino acid.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein acylation","synonyms":[{"name":"protein amino acid acylation","type":"exact"}],"termid":"GO:0043543"}


id: PBO:0026690
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_tamoxifen","termid":"PBO:0026690"}


id: PBO:0003540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase I transcription factor subunit Rrn11 (predicted)","termid":"PBO:0003540"}


id: PBO:0039186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"A-kinase anchoring protein 17A","termid":"PBO:0039186"}


id: PBO:0040082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arylsulfatase D","termid":"PBO:0040082"}


id: GO:0034011
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-cysteate + H2O = NH4 + pyruvate + sulfite.","definition_xrefs":["RHEA:13441","EC:4.4.1.25"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-sulfur lyase activity","termid":"GO:0016846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"L-cysteate sulfo-lyase activity","secondary_identifiers":["MetaCyc:4.4.1.25-RXN","KEGG_REACTION:R07634"],"synonyms":[{"name":"CuyA","type":"related"},{"name":"L-cysteate bisulfite-lyase (deaminating; pyruvate-forming) activity","type":"related"},{"name":"L-cysteate sulfo-lyase (deaminating) activity","type":"related"}],"termid":"GO:0034011"}


id: PBO:0080571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WDFY family member 4","termid":"PBO:0080571"}


id: PBO:0066774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 72","termid":"PBO:0066774"}


id: PBO:0064992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prolylcarboxypeptidase","termid":"PBO:0064992"}


id: PR:Q09887
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cationic amino acid transporter 4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04711"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized amino-acid permease C584.13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC584.13","secondary_identifiers":["UniProtKB:Q09887"],"synonyms":[{"name":"Spom972h-SLC7A4","type":"exact"}],"termid":"PR:Q09887"}


id: MOD:00653
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue sulfanyl group with an palmitoylsulfanyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"palmitoylated residue","termid":"MOD:00440"},{"relation_name":"is_a","term_name":"S-acylated residue","termid":"MOD:00672"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"S-palmitoylated residue","synonyms":[{"name":"S-hexadecanoylated residue","type":"exact"},{"name":"SPamRes","type":"exact"}],"termid":"MOD:00653"}


id: PBO:0053007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysosomal associated membrane protein 2","termid":"PBO:0053007"}


id: FYPO:0003436
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is decreased during the G2 phase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein kinase activity during mitotic interphase","termid":"FYPO:0003331"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000654","FYPO:0000652","FYPO:0000661","FYPO:0000707"],"is_obsolete":false,"name":"decreased protein kinase activity during mitotic G2 phase","synonyms":[{"name":"reduced protein kinase activity during mitotic G2 phase","type":"exact"}],"termid":"FYPO:0003436"}


id: GO:1904999
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of leukocyte adhesion to arterial endothelial cell.","definition_xrefs":["PMID:22267480","GOC:BHF","GOC:BHF_miRNA","GO_REF:0000058","GOC:TermGenie","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte adhesion to vascular endothelial cell","termid":"GO:1904996"},{"relation_name":"is_a","term_name":"regulation of leukocyte adhesion to arterial endothelial cell","termid":"GO:1904997"},{"relation_name":"positively_regulates","term_name":"leukocyte adhesion to arterial endothelial cell","termid":"GO:0061757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"positive regulation of leukocyte adhesion to arterial endothelial cell","synonyms":[{"name":"activation of leukocyte adhesion to arterial endothelial cell","type":"narrow"},{"name":"up regulation of leukocyte adhesion to arterial endothelial cell","type":"exact"},{"name":"up-regulation of leukocyte adhesion to arterial endothelial cell","type":"exact"},{"name":"upregulation of leukocyte adhesion to arterial endothelial cell","type":"exact"}],"termid":"GO:1904999"}


id: PBO:0083392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps ORF ATS1/YAL020C","termid":"PBO:0083392"}


id: GO:1901780
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of pentalenolactone.","definition_xrefs":["PMID:17178094","GOC:yaf","GOC:TermGenie","UniPathway:UPA00974","MetaCyc:PWY-6915"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpenoid biosynthetic process","termid":"GO:0016106"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"},{"relation_name":"is_a","term_name":"lactone biosynthetic process","termid":"GO:1901336"},{"relation_name":"is_a","term_name":"ether biosynthetic process","termid":"GO:1901503"},{"relation_name":"is_a","term_name":"pentalenolactone metabolic process","termid":"GO:1901778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"pentalenolactone biosynthetic process","synonyms":[{"name":"pentalenolactone anabolism","type":"exact"},{"name":"pentalenolactone biosynthesis","type":"exact"},{"name":"pentalenolactone formation","type":"exact"},{"name":"pentalenolactone synthesis","type":"exact"}],"termid":"GO:1901780"}


id: GO:1900951
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of 18-methylnonadec-1-ene biosynthetic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular biosynthetic process","termid":"GO:0031327"},{"relation_name":"is_a","term_name":"negative regulation of olefin biosynthetic process","termid":"GO:1900912"},{"relation_name":"is_a","term_name":"regulation of 18-methylnonadec-1-ene biosynthetic process","termid":"GO:1900950"},{"relation_name":"is_a","term_name":"negative regulation of 18-methylnonadec-1-ene metabolic process","termid":"GO:1900954"},{"relation_name":"negatively_regulates","term_name":"18-methylnonadec-1-ene biosynthetic process","termid":"GO:1900881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of 18-methylnonadec-1-ene biosynthetic process","synonyms":[{"name":"down regulation of 18-methylnonadec-1-ene anabolism","type":"exact"},{"name":"down regulation of 18-methylnonadec-1-ene biosynthesis","type":"exact"},{"name":"down regulation of 18-methylnonadec-1-ene biosynthetic process","type":"exact"},{"name":"down regulation of 18-methylnonadec-1-ene formation","type":"exact"},{"name":"down regulation of 18-methylnonadec-1-ene synthesis","type":"exact"},{"name":"down-regulation of 18-methylnonadec-1-ene anabolism","type":"exact"},{"name":"down-regulation of 18-methylnonadec-1-ene biosynthesis","type":"exact"},{"name":"down-regulation of 18-methylnonadec-1-ene biosynthetic process","type":"exact"},{"name":"down-regulation of 18-methylnonadec-1-ene formation","type":"exact"},{"name":"down-regulation of 18-methylnonadec-1-ene synthesis","type":"exact"},{"name":"downregulation of 18-methylnonadec-1-ene anabolism","type":"exact"},{"name":"downregulation of 18-methylnonadec-1-ene biosynthesis","type":"exact"},{"name":"downregulation of 18-methylnonadec-1-ene biosynthetic process","type":"exact"},{"name":"downregulation of 18-methylnonadec-1-ene formation","type":"exact"},{"name":"downregulation of 18-methylnonadec-1-ene synthesis","type":"exact"},{"name":"inhibition of 18-methylnonadec-1-ene anabolism","type":"exact"},{"name":"inhibition of 18-methylnonadec-1-ene biosynthesis","type":"exact"},{"name":"inhibition of 18-methylnonadec-1-ene biosynthetic process","type":"narrow"},{"name":"inhibition of 18-methylnonadec-1-ene formation","type":"exact"},{"name":"inhibition of 18-methylnonadec-1-ene synthesis","type":"exact"},{"name":"negative regulation of 18-methylnonadec-1-ene anabolism","type":"exact"},{"name":"negative regulation of 18-methylnonadec-1-ene biosynthesis","type":"exact"},{"name":"negative regulation of 18-methylnonadec-1-ene formation","type":"exact"},{"name":"negative regulation of 18-methylnonadec-1-ene synthesis","type":"exact"}],"termid":"GO:1900951"}


id: FYPO:0003319
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell adhesion phenotype observed in the vegetative growth phase of the life cycle in which mannose-specific flocculation is increased. Mannose-specific flocculation is the non-sexual aggregation of cells, mediated via the binding of cell wall proteins on one cell to mannose residues on the other, and when it is increased cells adhere to each other more strongly or to a greater extent than normal.","definition_xrefs":["GO:0036350","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cell-cell adhesion","termid":"FYPO:0005760"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased mannose-specific flocculation","synonyms":[{"name":"increased cell-cell adhesion involved in mannose-specific flocculation","type":"exact"},{"name":"increased mannose-specific flocculation during mitotic cell cycle","type":"related"},{"name":"increased mannose-specific flocculation during vegetative growth","type":"exact"}],"termid":"FYPO:0003319"}


id: PBO:0003670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER triose phosphate transmembrane transporter (predicted)","termid":"PBO:0003670"}


id: PBO:0039297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALG11 alpha-1,2-mannosyltransferase","termid":"PBO:0039297"}


id: PBO:0052882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 9-4","termid":"PBO:0052882"}


id: PBO:0013778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRCT domain protein Mdb1","termid":"PBO:0013778"}


id: PBO:0090566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII-coated vesicle component Emp24","termid":"PBO:0090566"}


id: PBO:0044710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 10 pseudogene 1","termid":"PBO:0044710"}


id: PBO:0003739
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.1.1.205","termid":"PBO:0003739"}


id: PBO:0081574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 501","termid":"PBO:0081574"}


id: GO:0017174
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + glycine = S-adenosyl-L-homocysteine + sarcosine.","definition_xrefs":["EC:2.1.1.20"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-methyltransferase activity","termid":"GO:0008170"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"glycine N-methyltransferase activity","secondary_identifiers":["MetaCyc:GLYCINE-N-METHYLTRANSFERASE-RXN","Reactome:R-HSA-6798317","RHEA:19937","KEGG_REACTION:R00367"],"synonyms":[{"name":"GNMT","type":"related"},{"name":"S-adenosyl-L-methionine:glycine N-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:glycine methyltransferase activity","type":"related"},{"name":"glycine methyltransferase activity","type":"related"}],"termid":"GO:0017174"}


id: GO:0032273
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the process of creating protein polymers.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein-containing complex assembly","termid":"GO:0031334"},{"relation_name":"is_a","term_name":"regulation of protein polymerization","termid":"GO:0032271"},{"relation_name":"positively_regulates","term_name":"protein polymerization","termid":"GO:0051258"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"positively_regulates","termid":"GO:0065003"},{"rel_name":"positively_regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0065003"],"is_obsolete":false,"name":"positive regulation of protein polymerization","synonyms":[{"name":"activation of protein polymerization","type":"narrow"},{"name":"stimulation of protein polymerization","type":"narrow"},{"name":"up regulation of protein polymerization","type":"exact"},{"name":"up-regulation of protein polymerization","type":"exact"},{"name":"upregulation of protein polymerization","type":"exact"}],"termid":"GO:0032273"}


id: PBO:0043126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium and integrin binding family member 4","termid":"PBO:0043126"}


id: GO:0061125
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of directed movement of a motile cell or organism up a concentration gradient of 3',5'-cAMP by the action of a chlorinated alkylphenone. An alkylphenone is an aromatic polyketide with methyl and chlorine substitutions.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of positive chemotaxis to cAMP by chlorinated alkylphenone","termid":"GO:0061119"},{"relation_name":"is_a","term_name":"negative regulation of positive chemotaxis to cAMP","termid":"GO:0061123"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of positive chemotaxis to cAMP by chlorinated alkylphenone","termid":"GO:0061125"}


id: PBO:0110406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L27a pseudogene 9","termid":"PBO:0110406"}


id: FYPO:0006311
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which DNA-3'-diphospho-5'-guanosine diphosphatase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal DNA-3'-diphospho-5'-guanosine diphosphatase activity","termid":"FYPO:0006310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000652","FYPO:0000654","FYPO:0000661"],"is_obsolete":false,"name":"abolished DNA-3'-diphospho-5'-guanosine diphosphatase activity","synonyms":[{"name":"DNA-3'-diphospho-5'-guanosine diphosphatase activity abolished","type":"exact"}],"termid":"FYPO:0006311"}


id: PBO:0002477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication factor C complex subunit Rfc2","termid":"PBO:0002477"}


id: PBO:0082271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AMP deaminase; tetrameric enzyme that catalyzes the deamination of AMP to form IMP and ammonia; thought to be involved in regulation of intracellular purine (adenine, guanine, and inosine) nucleotide pools","termid":"PBO:0082271"}


id: PBO:0056126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LysM domain containing 3","termid":"PBO:0056126"}


id: GO:0140810
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + histone H1 L-arginyl (position 54)= histone H1 L-citrullyl (position 54) + NH4+, resulting in histone H1 citrullination at position 54.","definition_xrefs":["PMID:24463520"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone arginine deiminase activity","termid":"GO:0140794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0140096","GO:0003674","GO:0016810","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"histone H1R54 arginine deiminase activity","synonyms":[{"name":"H1-R54 citrullination","type":"exact"},{"name":"histone H1-R54 deiminase activity","type":"exact"},{"name":"histone-arginine deiminase activity (H1-R54 specific)","type":"exact"}],"termid":"GO:0140810"}


id: GO:0032923
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of phosphonates, any organic compound containing one or more C-PO(OH)2 or C-PO(OR)2 (with R=alkyl, aryl) groups. Synthesis of phosphonic acid itself, an inorganic compound without the biochemically relevant C-P bond, is not included.","definition_xrefs":["GOC:js"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic phosphonate metabolic process","termid":"GO:0019634"},{"relation_name":"is_a","term_name":"cellular biosynthetic process","termid":"GO:0044249"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"organic phosphonate biosynthetic process","synonyms":[{"name":"organophosphonate biosynthetic process","type":"related"}],"termid":"GO:0032923"}


id: GO:0004258
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the release of a C-terminal amino acid with a broad specificity.","definition_xrefs":["EC:3.4.16.5"],"gene_count":0,"genotype_count":0,"name":"obsolete vacuolar carboxypeptidase Y (obsolete GO:0004258)","synonyms":[{"name":"vacuolar carboxypeptidase Y","type":"exact"}],"termid":"GO:0004258"}


id: PBO:0017707
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae CDC43","termid":"PBO:0017707"}


id: FYPO:0007477
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the stable inheritance of heterochromatic structure is abnormal in regions of the genome where heterochromatin is normally maintained over successive generations.","definition_xrefs":["PomBase:mah","PMID:29899117","PMID:31278118"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985"],"is_obsolete":false,"name":"abnormal epigenetic heterochromatin inheritance","synonyms":[{"name":"abnormal PEV","type":"related"},{"name":"abnormal epigenetic heterochromatin propagation","type":"exact"},{"name":"abnormal epigenetic inheritance of heterochromatin","type":"exact"}],"termid":"FYPO:0007477"}


id: PBO:0073005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium voltage-gated channel beta subunit 4","termid":"PBO:0073005"}


id: GO:0010184
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hormone transport","termid":"GO:0009914"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"cytokinin transport","termid":"GO:0010184"}


id: PBO:0013805
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae HUT1","termid":"PBO:0013805"}


id: GO:0019147
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-1-aminopropan-2-ol + NAD+ = aminoacetone + H+ + NADH.","definition_xrefs":["RHEA:16517","EC:1.1.1.75"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"(R)-aminopropanol dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R03759","MetaCyc:AMINOPROPDEHYDROG-RXN"],"synonyms":[{"name":"(R)-1-aminopropan-2-ol:NAD+ oxidoreductase activity","type":"related"},{"name":"1-aminopropan-2-ol-NAD+ dehydrogenase activity","type":"related"},{"name":"1-aminopropan-2-ol-dehydrogenase activity","type":"related"},{"name":"DL-1-aminopropan-2-ol: NAD+ dehydrogenase activity","type":"related"},{"name":"L(+)-1-aminopropan-2-ol-NAD/NADP oxidoreductase activity","type":"related"},{"name":"L(+)-1-aminopropan-2-ol:NAD+ oxidoreductase activity","type":"related"},{"name":"L-aminopropanol dehydrogenase activity","type":"exact"}],"termid":"GO:0019147"}


id: PR:Q10141
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mms1 gene.","definition_xrefs":["UniProtKB:Q10141","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C3H8.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H8.05c","synonyms":[{"name":"Spom972h-mms1","type":"exact"}],"termid":"PR:Q10141"}


id: FYECO:0000343
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which ammonium sulfate was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ (NH4)2SO4","synonyms":[{"name":"+ ammonium sulfate","type":"exact"}],"termid":"FYECO:0000343"}


id: PBO:0088453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetyl-CoA C-acetyltransferase Erg10","termid":"PBO:0088453"}


id: PATO:0001344
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A S. cerevisiae mating type cells that secrete a pheromone that stimulates a haploids.","definition_xrefs":["MGED:MGED"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Saccharomyces cerevisiae mating type","termid":"PATO:0001342"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha mating type (yeast)","synonyms":[{"name":"alpha","type":"broad"}],"termid":"PATO:0001344"}


id: GO:0061310
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in cardiac neural crest cell differentiation.","definition_xrefs":["GOC:mtg_heart","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete canonical Wnt signaling pathway involved in cardiac neural crest cell differentiation involved in heart development (obsolete GO:0061310)","synonyms":[{"name":"canonical Wnt receptor signaling pathway involved in cardiac neural crest cell differentiation involved in heart development","type":"exact"},{"name":"canonical Wnt receptor signalling pathway involved in cardiac neural crest cell differentiation involved in heart development","type":"exact"},{"name":"canonical Wnt-activated signaling pathway involved in cardiac neural crest cell differentiation involved in heart development","type":"exact"}],"termid":"GO:0061310"}


id: GO:1901707
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to leptomycin B.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid binding","termid":"GO:0005504"},{"relation_name":"is_a","term_name":"organic cyclic compound binding","termid":"GO:0097159"},{"relation_name":"is_a","term_name":"heterocyclic compound binding","termid":"GO:1901363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008289"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0008289"],"is_obsolete":false,"name":"leptomycin B binding","termid":"GO:1901707"}


id: GO:0061427
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter and stops, prevents or reduces the frequency, rate or extent of a ceramide biosynthetic process.","definition_xrefs":["PMID:15302821","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of ceramide biosynthetic process by negative regulation of transcription from RNA Polymerase II promoter (obsolete GO:0061427)","termid":"GO:0061427"}


id: PBO:0083660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endoplasmic reticulum (ER) localized integral membrane protein; may promote secretion of certain hexose transporters, including Gal2p; involved in glucose-dependent repression","termid":"PBO:0083660"}


id: GO:0006506
data:
  {"annotated_genes":["SJAG_04881","SJAG_06425","SJAG_01227","SJAG_01570","SJAG_03115","SJAG_00295","SJAG_03292","SJAG_00831","SJAG_05278","SJAG_02913","SJAG_01416","SJAG_05327","SJAG_01860","SJAG_03878","SJAG_03066","SJAG_02903","SJAG_04975","SJAG_03672","SJAG_03506","SJAG_00068","SJAG_00846","SJAG_02776","SJAG_04337","SJAG_04165","SJAG_06383","SJAG_04924","SJAG_02523","SJAG_02804","SJAG_03801","SJAG_02488","SJAG_04119","SJAG_05219"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84725,84995,85617,87271,89035,89124,89573,90563,92467,94141,94688,94891,96251,96317,97624,99055,99789,102715,103549,104582,105926,107604,108361,110790,111217,112142,113242],"is_not":false,"summary":null,"term":"GO:0006506"},{"annotations":[87444,88269,99726,109954,83517],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0016255"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage.","definition_xrefs":["GOC:go_curators","ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein lipidation","termid":"GO:0006497"},{"relation_name":"is_a","term_name":"GPI anchor metabolic process","termid":"GO:0006505"},{"relation_name":"is_a","term_name":"phosphatidylinositol biosynthetic process","termid":"GO:0006661"},{"relation_name":"is_a","term_name":"glycolipid biosynthetic process","termid":"GO:0009247"}],"gene_count":32,"genes_by_uniquename":{"SJAG_00068":null,"SJAG_00295":null,"SJAG_00831":null,"SJAG_00846":null,"SJAG_01227":null,"SJAG_01416":null,"SJAG_01570":null,"SJAG_01860":null,"SJAG_02488":null,"SJAG_02523":null,"SJAG_02776":null,"SJAG_02804":null,"SJAG_02903":null,"SJAG_02913":null,"SJAG_03066":null,"SJAG_03115":null,"SJAG_03292":null,"SJAG_03506":null,"SJAG_03672":null,"SJAG_03801":null,"SJAG_03878":null,"SJAG_04119":null,"SJAG_04165":null,"SJAG_04337":null,"SJAG_04881":null,"SJAG_04924":null,"SJAG_04975":null,"SJAG_05219":null,"SJAG_05278":null,"SJAG_05327":null,"SJAG_06383":null,"SJAG_06425":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0042158"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0042158"],"is_obsolete":false,"name":"GPI anchor biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0015998"],"synonyms":[{"name":"GPI anchor anabolism","type":"exact"},{"name":"GPI anchor biosynthesis","type":"exact"},{"name":"GPI anchor formation","type":"exact"},{"name":"GPI anchor synthesis","type":"exact"},{"name":"GPI/GSI anchor biosynthesis","type":"broad"},{"name":"GPI/GSI anchor biosynthetic process","type":"broad"},{"name":"glycosylphosphatidylinositol biosynthesis","type":"exact"},{"name":"glycosylphosphatidylinositol biosynthetic process","type":"exact"}],"termid":"GO:0006506","terms_by_termid":{"GO:0006506":null,"GO:0016255":null}}


id: PBO:0028711
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_regional_homologous_chromosome_pairing","termid":"PBO:0028711"}


id: GO:0036165
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The growth of colonies in filamentous chains of cells as a result of an increase in temperature.","definition_xrefs":["GOC:di","PMID:22365851"],"direct_ancestors":[{"relation_name":"is_a","term_name":"filamentous growth of a population of unicellular organisms in response to heat","termid":"GO:0036168"},{"relation_name":"is_a","term_name":"invasive filamentous growth","termid":"GO:0036267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"invasive growth in response to heat","synonyms":[{"name":"invasive growth in response to elevated temperature","type":"exact"},{"name":"invasive growth in response to high temperature","type":"exact"},{"name":"invasive growth in response to temperature stimulus","type":"broad"}],"termid":"GO:0036165"}


id: PBO:0044871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DENN domain containing 3","termid":"PBO:0044871"}


id: PBO:0031524
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_DNA-7-methylguanine_glycosylase_activity","termid":"PBO:0031524"}


id: PBO:0061380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophosmin 1 pseudogene 40","termid":"PBO:0061380"}


id: PBO:0081745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 675","termid":"PBO:0081745"}


id: FYPO:0001250
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which the probability that a DNA replication will initiate at a particular replication origin is lower than in wild type. In cells with decreased origin firing efficiency, genomic DNA replication initiates from fewer origins than wild type, and is completed in fewer, larger segments, than wild type.","definition_xrefs":["PomBase:mah","PMID:18799612"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of mitotic DNA replication initiation","termid":"FYPO:0001248"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"decreased origin firing efficiency","synonyms":[{"name":"decreased origin firing efficiency during mitotic cell cycle","type":"related"},{"name":"decreased origin firing efficiency during vegetative growth","type":"exact"},{"name":"reduced origin firing efficiency","type":"exact"}],"termid":"FYPO:0001250"}


id: GO:1901945
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of miltiradiene.","definition_xrefs":["GOC:TermGenie","PMID:22027823"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpene catabolic process","termid":"GO:0046247"},{"relation_name":"is_a","term_name":"miltiradiene metabolic process","termid":"GO:1901944"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"miltiradiene catabolic process","synonyms":[{"name":"miltiradiene breakdown","type":"exact"},{"name":"miltiradiene catabolism","type":"exact"},{"name":"miltiradiene degradation","type":"exact"}],"termid":"GO:1901945"}


id: GO:0061598
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction ATP + molybdopterin = diphosphate + adenylyl-molybdopterin.","definition_xrefs":["EC:2.7.7.75","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylyltransferase activity","termid":"GO:0070566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0016779","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"molybdopterin adenylyltransferase activity","secondary_identifiers":["RHEA:31331"],"termid":"GO:0061598"}


id: PBO:0068178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 485","termid":"PBO:0068178"}


id: FYPO:0003624
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of threonine residues of one or more specific proteins is decreased during a cellular response to heat.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete decreased protein threonine phosphorylation during cellular response to heat (obsolete FYPO:0003624)","synonyms":[{"name":"decreased protein threonine phosphorylation during cellular response to heat during mitotic cell cycle","type":"related"},{"name":"decreased protein threonine phosphorylation during cellular response to heat during vegetative growth","type":"exact"},{"name":"reduced protein threonine phosphorylation during cellular response to heat","type":"exact"}],"termid":"FYPO:0003624"}


id: GO:0046086
data:
  {"annotated_genes":["SJAG_01070","SJAG_00044"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84949],"is_not":false,"summary":null,"term":"GO:0046086"},{"annotations":[112856],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006169"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenosine metabolic process","termid":"GO:0046085"},{"relation_name":"is_a","term_name":"purine ribonucleoside biosynthetic process","termid":"GO:0046129"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00044":null,"SJAG_01070":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"adenosine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"adenosine anabolism","type":"exact"},{"name":"adenosine biosynthesis","type":"exact"},{"name":"adenosine formation","type":"exact"},{"name":"adenosine synthesis","type":"exact"}],"termid":"GO:0046086","terms_by_termid":{"GO:0006169":null,"GO:0046086":null}}


id: PBO:0059925
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 11","termid":"PBO:0059925"}


id: GO:0098527
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A neuromuscular junction in which the target muscle cell is a somatic muscle cell, such as those found in nematodes and arthropods.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuromuscular junction","termid":"GO:0031594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"neuromuscular junction of somatic muscle","termid":"GO:0098527"}


id: GO:0001944
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the vasculature over time, from its formation to the mature structure. The vasculature is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the organism.","definition_xrefs":["UBERON:0002409","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"system development","termid":"GO:0048731"},{"relation_name":"part_of","term_name":"circulatory system development","termid":"GO:0072359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vasculature development","synonyms":[{"name":"vascular system development","type":"related"}],"termid":"GO:0001944"}


id: GO:0140363
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ribonucleoprotein granule located in the cytoplasm that is formed by the RNA-binding protein TIS11B and RNA molecules, enriched in membrane protein-encoding mRNAs with multiple AU-rich elements. TIS granules are reticular meshworks intertwined with the endoplasmic reticulum (ER).","definition_xrefs":["Wikipedia:TIGER_domain","PMID:30449617","PMID:30479375"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic ribonucleoprotein granule","termid":"GO:0036464"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"TIS granule","termid":"GO:0140363"}


id: PBO:0039651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adaptor related protein complex 1 subunit mu 2","termid":"PBO:0039651"}


id: PBO:0027078
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_plasma_membrane,_with_protein_mislocalized_to_cytoplasm,_during_glucose_starvation","termid":"PBO:0027078"}


id: PBO:0064209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasminogen activator, urokinase receptor","termid":"PBO:0064209"}


id: PR:O13745
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tfb1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13745"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II transcription factor B subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC16E8.11c","synonyms":[{"name":"RNA polymerase II transcription factor B 73 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNA polymerase II transcription factor B p73 subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-tfb1","type":"exact"}],"termid":"PR:O13745"}


id: MOD:01217
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Isotopic label -","definition_xrefs":["Unimod:285#D","PubMed:12872131"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Sulfanilic Acid (SA), light C12","termid":"MOD:00605"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sulfanilic Acid (SA), light C12 - site D","synonyms":[{"name":"Light Sulfanilic Acid (SA) C12","type":"related"},{"name":"SulfanilicAcid","type":"related"}],"termid":"MOD:01217"}


id: SO:0002136
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A joining gene that rearranges at the DNA level and codes the joining region of the variable domain of aT-cell receptor chain.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html","IGMT:http://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T_cell_receptor_gene","termid":"SO:0002133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TR_J_Gene","synonyms":[{"name":"T_cell_receptor_J_gene","type":"exact"}],"termid":"SO:0002136"}


id: PBO:0088039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-conjugating enzyme; mediates selective degradation of short-lived, abnormal, or excess proteins, including histone H3; central component of the cellular stress response; expression is heat inducible; protein abundance increases in response to DNA replication stress; UBC5 has a paralog, UBC4, that arose from the whole genome duplication","termid":"PBO:0088039"}


id: PBO:0109396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 23B","termid":"PBO:0109396"}


id: PBO:0057103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 195","termid":"PBO:0057103"}


id: PATO:0000152
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's sensitivity towards a fixed location or value where a change is observed; upper limit.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitivity toward","termid":"PATO:0000085"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"threshold","termid":"PATO:0000152"}


id: GO:0080007
data:
  {"annotated_genes":["SJAG_01457"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99495],"is_not":false,"summary":null,"term":"GO:0080007"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-nitrosoglutathione + NADH + H+ = S-(hydroxysulfenamide)glutathione + NAD+.","definition_xrefs":["PMID:30795534","PMID:27094420","PMID:11260719"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"S-nitrosoglutathione reductase (NADH) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN-17884","RHEA:78371"],"termid":"GO:0080007","terms_by_termid":{"GO:0080007":null}}


id: GO:0044698
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a symbiont undergoes a change in shape or form, within the host's cell.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete morphogenesis of symbiont in host cell (obsolete GO:0044698)","termid":"GO:0044698"}


id: PBO:0060671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nedd4 family interacting protein 1","termid":"PBO:0060671"}


id: _global:characteristic_of
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence.","direct_ancestors":[{"relation_name":"is_a","term_name":"characteristic_of_part_of","termid":"_global:characteristic_of_part_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"characteristic_of","secondary_identifiers":["RO:0000052"],"termid":"_global:characteristic_of"}


id: GO:0035461
data:
  {"annotated_genes":["SJAG_00835","SJAG_03808","SJAG_04673","SJAG_05175","SJAG_02779","SJAG_02962","SJAG_02780","SJAG_02152","SJAG_03503","SJAG_03652"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70832,88104],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905135"},{"annotations":[103563],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904947"},{"annotations":[99652],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990545"},{"annotations":[104288],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098717"},{"annotations":[113473,86199,86198,114739],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903090"},{"annotations":[86200,114740,113474,86201],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903091"},{"annotations":[113475,86203,86202,114741],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903092"},{"annotations":[96700],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140125"},{"annotations":[86204,86205,96701],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071934"}]},"cv_name":"biological_process","definition":"The process in which a vitamin is transported across a membrane. A vitamin is one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin transport","termid":"GO:0051180"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00835":null,"SJAG_02152":null,"SJAG_02779":null,"SJAG_02780":null,"SJAG_02962":null,"SJAG_03503":null,"SJAG_03652":null,"SJAG_03808":null,"SJAG_04673":null,"SJAG_05175":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"vitamin transmembrane transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"vitamin membrane transport","type":"exact"}],"termid":"GO:0035461","terms_by_termid":{"GO:0071934":null,"GO:0098717":null,"GO:0140125":null,"GO:1903090":null,"GO:1903091":null,"GO:1903092":null,"GO:1904947":null,"GO:1905135":null,"GO:1990545":null}}


id: PBO:0057833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3150b","termid":"PBO:0057833"}


id: PBO:0065240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 14","termid":"PBO:0065240"}


id: GO:0005561
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete nucleic acid (obsolete GO:0005561)","synonyms":[{"name":"nucleic acid","type":"exact"}],"termid":"GO:0005561"}


id: PR:P40977
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01994","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22F8.11","secondary_identifiers":["UniProtKB:P40977"],"synonyms":[{"name":"PLC-1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PLCD4","type":"exact"},{"name":"phospholipase C-1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P40977"}


id: GO:0007565
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth.","definition_xrefs":["ISBN:0192800825"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multi-organism reproductive process","termid":"GO:0044703"},{"relation_name":"is_a","term_name":"multi-multicellular organism process","termid":"GO:0044706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"female pregnancy","secondary_identifiers":["Wikipedia:Gestation"],"synonyms":[{"name":"carrying of young","type":"related"},{"name":"gestation","type":"exact"}],"termid":"GO:0007565"}


id: GO:0019043
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process by which a virus establishes a latent state within its host, either as an integrated provirus within the host genome or as an episome, where viral genome remains in the cytoplasm or nucleus as distinct objects.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"},{"relation_name":"part_of","term_name":"viral latency","termid":"GO:0019042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"establishment of viral latency","secondary_identifiers":["GO:0075601"],"synonyms":[{"name":"lysogenic commitment","type":"exact"},{"name":"phage lysogeny","type":"narrow"}],"termid":"GO:0019043"}


id: PBO:0071014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 16","termid":"PBO:0071014"}


id: PATO:0000718
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A viability quality inhering in a population by virtue of the bearer's long term survival inability.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viability","termid":"PATO:0000169"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lethal (sensu genetics)","termid":"PATO:0000718"}


id: FYECO:0000190
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which DAPI was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE FYECO:0000190 DAPI added (obsolete FYECO:0000190)","synonyms":[{"name":"4',6-diamidino-2-phenylindole added","type":"exact"}],"termid":"FYECO:0000190"}


id: PBO:0071560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35a pseudogene 26","termid":"PBO:0071560"}


id: PBO:0085722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in the assembly of 60S ribosomal subunits; functionally interacts with Dbp6p; functions in a late nucleoplasmic step of the assembly","termid":"PBO:0085722"}


id: PBO:0059304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L50","termid":"PBO:0059304"}


id: PBO:0094074
data:
  {"annotation_feature_type":"gene","cv_name":"feature_cvtermprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_phenotype_score","termid":"PBO:0094074"}


id: PBO:0052538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kallikrein related peptidase 11","termid":"PBO:0052538"}


id: FYPO:0000965
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 14 of histone H3 in centromere outer repeat regions is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K14 acetylation during vegetative growth","termid":"FYPO:0000788"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002494","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0002274"],"is_obsolete":false,"name":"abnormal histone H3-K14 acetylation at centromere outer repeat during vegetative growth","synonyms":[{"name":"abnormal histone H3-K14 acetylation at centromere otr during vegetative growth","type":"exact"},{"name":"abnormal histone H3-K14 acetylation at centromere outer repeat during mitotic cell cycle","type":"related"},{"name":"abnormal histone H3-K14 acetylation at centromeric outer repeat region during vegetative growth","type":"exact"},{"name":"abnormal histone H3-K14 acetylation at pericentric region during vegetative growth","type":"related"},{"name":"abnormal histone H3-K14 acetylation at pericentromeric region during vegetative growth","type":"related"},{"name":"abnormal histone H3K14 acetylation at centromere outer repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0000965"}


id: GO:0045259
data:
  {"annotated_genes":["SJAG_00985","SJAG_03925","SJAG_00836","SJAG_MIT37","SJAG_00133","SJAG_05204","SJAG_00542","SJAG_03114","SJAG_MIT15","SJAG_00438","SJAG_07003","SJAG_MIT09","SJAG_04122","SJAG_02598","SJAG_00915","SJAG_02105","SJAG_02564"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[115046,99696,89319,97835,115057,90886,89915,115052,103900],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045263"},{"annotations":[85196],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045267"},{"annotations":[99048,88894,104785,100999],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045269"},{"annotations":[103810,111845,99666],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045265"}]},"cv_name":"cellular_component","definition":"A proton-transporting two-sector ATPase complex that catalyzes the phosphorylation of ADP to ATP during oxidative phosphorylation. The complex comprises a membrane sector (F0) that carries out proton transport and a cytoplasmic compartment sector (F1) that catalyzes ATP synthesis by a rotational mechanism; the extramembrane sector (containing 3 a and 3 b subunits) is connected via the d-subunit to the membrane sector by several smaller subunits. Within this complex, the g and e subunits and the 9-12 c subunits rotate by consecutive 120 degree angles and perform parts of ATP synthesis. This movement is driven by the hydrogen ion electrochemical potential gradient.","definition_xrefs":["ISBN:0716743663","ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton-transporting two-sector ATPase complex","termid":"GO:0016469"},{"relation_name":"is_a","term_name":"cation channel complex","termid":"GO:0034703"},{"relation_name":"is_a","term_name":"respiratory chain complex","termid":"GO:0098803"},{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00133":null,"SJAG_00438":null,"SJAG_00542":null,"SJAG_00836":null,"SJAG_00915":null,"SJAG_00985":null,"SJAG_02105":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_03114":null,"SJAG_03925":null,"SJAG_04122":null,"SJAG_05204":null,"SJAG_07003":null,"SJAG_MIT09":null,"SJAG_MIT15":null,"SJAG_MIT37":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"proton-transporting ATP synthase complex","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0045255"],"synonyms":[{"name":"F1-F0 complex","type":"exact"},{"name":"hydrogen-translocating F-type ATPase complex","type":"exact"},{"name":"hydrogen-transporting ATP synthase complex","type":"exact"},{"name":"proton-transporting F-type ATPase complex","type":"related"}],"termid":"GO:0045259","terms_by_termid":{"GO:0045263":null,"GO:0045265":null,"GO:0045267":null,"GO:0045269":null}}


id: GO:1902358
data:
  {"annotated_genes":["SJAG_01941","SJAG_02463","SJAG_00671"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[61323,63944,65150,65151,112639],"is_not":false,"summary":null,"term":"GO:1902358"},{"annotations":[84487],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990557"},{"annotations":[96369,106120],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902434"}]},"cv_name":"biological_process","definition":"The directed movement of sulfate across a membrane.","definition_xrefs":["GOC:dph","GOC:TermGenie","PMID:9055073"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfate transport","termid":"GO:0008272"},{"relation_name":"is_a","term_name":"inorganic anion transmembrane transport","termid":"GO:0098661"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00671":null,"SJAG_01941":null,"SJAG_02463":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"sulfate transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"termid":"GO:1902358","terms_by_termid":{"GO:1902358":null,"GO:1902434":null,"GO:1990557":null}}


id: PBO:0062014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily L member 3","termid":"PBO:0062014"}


id: GO:0071334
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a rhamnose stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to rhamnose","termid":"GO:0032149"},{"relation_name":"is_a","term_name":"cellular response to hexose stimulus","termid":"GO:0071331"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to rhamnose stimulus","synonyms":[{"name":"cellular response to L-rhamnose stimulus","type":"narrow"}],"termid":"GO:0071334"}


id: PBO:0080909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta","termid":"PBO:0080909"}


id: PBO:0053766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1011","termid":"PBO:0053766"}


id: GO:0018813
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxo-3-enoate-4-benzenoid + H2O = pyruvate + benzaldehyde derivative. Substrates are (3E)-4-(5-amino-2-hydroxy-phenyl)-2-oxo-but-3-ene-1-oic-acid (forms 5-aminosalicylaldehyde) and trans-o-hydroxybenzylidenepyruvate (forms salicylaldehyde).","definition_xrefs":["UM-BBD_enzymeID:r0338"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"trans-o-hydroxybenzylidenepyruvate hydratase-aldolase activity","secondary_identifiers":["RHEA:27389","EC:4.1.2.45"],"termid":"GO:0018813"}


id: PBO:0070884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L15 pseudogene 16","termid":"PBO:0070884"}


id: PBO:0030843
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-multiseptate_cell_during_cellular_response_to_caffeine","termid":"PBO:0030843"}


id: GO:0002077
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The proteolytic digestion of components in the acrosomal matrix that occurs as part of the acrosome reaction. The process can occur either in the cumulus oophorous facilitating the penetration of it by the sperm, or at the zona pellucida allowing the sperm to reach the plasma membrane of the egg where the inner acrosomal membrane of the sperm can interact with the egg plasma membrane.","definition_xrefs":["PMID:3886029","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteolysis involved in protein catabolic process","termid":"GO:0051603"},{"relation_name":"part_of","term_name":"acrosome reaction","termid":"GO:0007340"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0030163"],"is_obsolete":false,"name":"acrosome matrix dispersal","termid":"GO:0002077"}


id: GO:0047958
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glycine + 2-oxoglutarate = glyoxylate + L-glutamate.","definition_xrefs":["EC:2.6.1.4","MetaCyc:GLYCINE-AMINOTRANSFERASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016769"],"is_obsolete":false,"name":"glycine:2-oxoglutarate aminotransferase activity","secondary_identifiers":["RHEA:14089"],"synonyms":[{"name":"L-glutamate:glyoxylate aminotransferase activity","type":"exact"},{"name":"glutamate-glyoxylate transaminase activity","type":"exact"},{"name":"glutamic-glyoxylic transaminase activity","type":"related"},{"name":"glycine aminotransferase activity","type":"broad"},{"name":"glycine transaminase activity","type":"broad"},{"name":"glyoxylate-glutamate aminotransferase activity","type":"related"},{"name":"glyoxylate-glutamic transaminase activity","type":"related"}],"termid":"GO:0047958"}


id: SO:0001882
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant, caused by an alteration of the genomic sequence, where a deletion fuses genomic features.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structural_variant","termid":"SO:0001537"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"feature_fusion","synonyms":[{"name":"feature fusion","type":"exact"}],"termid":"SO:0001882"}


id: GO:1905857
data:
  {"annotated_genes":["SJAG_00685"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85759],"is_not":false,"summary":null,"term":"GO:1905857"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of pentose-phosphate shunt.","definition_xrefs":["PMID:19015259","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pentose-phosphate shunt","termid":"GO:0043456"},{"relation_name":"is_a","term_name":"positive regulation of purine nucleotide metabolic process","termid":"GO:1900544"},{"relation_name":"positively_regulates","term_name":"pentose-phosphate shunt","termid":"GO:0006098"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00685":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006091"},{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150","GO:0006091","GO:0005975"],"is_obsolete":false,"name":"positive regulation of pentose-phosphate shunt","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1905857","terms_by_termid":{"GO:1905857":null}}


id: PBO:0003603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial translational activator of cytochrome C oxidase I (predicted)","termid":"PBO:0003603"}


id: GO:0046886
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hormones.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular biosynthetic process","termid":"GO:0031328"},{"relation_name":"is_a","term_name":"positive regulation of hormone metabolic process","termid":"GO:0032352"},{"relation_name":"is_a","term_name":"regulation of hormone biosynthetic process","termid":"GO:0046885"},{"relation_name":"positively_regulates","term_name":"hormone biosynthetic process","termid":"GO:0042446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hormone biosynthetic process","synonyms":[{"name":"activation of hormone biosynthetic process","type":"narrow"},{"name":"positive regulation of hormone anabolism","type":"exact"},{"name":"positive regulation of hormone biosynthesis","type":"exact"},{"name":"positive regulation of hormone formation","type":"exact"},{"name":"positive regulation of hormone synthesis","type":"exact"},{"name":"stimulation of hormone biosynthetic process","type":"narrow"},{"name":"up regulation of hormone biosynthetic process","type":"exact"},{"name":"up-regulation of hormone biosynthetic process","type":"exact"},{"name":"upregulation of hormone biosynthetic process","type":"exact"}],"termid":"GO:0046886"}


id: FYPO:0001015
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol-4-phosphate measured in a cell differs from normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered cellular phosphoinositide level","termid":"FYPO:0001290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"altered cellular phosphatidylinositol-4-phosphate level","synonyms":[{"name":"abnormal cellular phosphatidylinositol-4-phosphate level","type":"exact"},{"name":"altered PI-4-P accumulation","type":"related"},{"name":"altered cellular PI(4)P level","type":"exact"},{"name":"altered cellular PI-4-P level","type":"exact"},{"name":"altered cellular phosphatidylinositol-4-phosphate level during mitotic cell cycle","type":"related"},{"name":"altered cellular phosphatidylinositol-4-phosphate level during vegetative growth","type":"exact"}],"termid":"FYPO:0001015"}


id: PBO:0026965
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_vegetative_cell_population_growth_during_phosphate_starvation","termid":"PBO:0026965"}


id: GO:0010325
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of raffinose family oligosaccharides (RFOs, such as raffinose, stachyose, verbascose and other molecules with a higher degree of galactosyl polymerization).","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide biosynthetic process","termid":"GO:0009312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"raffinose family oligosaccharide biosynthetic process","synonyms":[{"name":"raffinose family oligosaccharide biosynthesis","type":"exact"}],"termid":"GO:0010325"}


id: PBO:0002498
data:
  {"annotation_feature_type":"gene","cv_name":"DNA_binding_specificity","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"binds d(GT)n","termid":"PBO:0002498"}


id: PBO:0044838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 126","termid":"PBO:0044838"}


id: GO:0051188
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of a cofactor, a substance that is required for the activity of an enzyme or other protein.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete cofactor biosynthetic process (obsolete GO:0051188)","synonyms":[{"name":"cofactor anabolism","type":"exact"},{"name":"cofactor biosynthesis","type":"exact"},{"name":"cofactor formation","type":"exact"},{"name":"cofactor synthesis","type":"exact"}],"termid":"GO:0051188"}


id: PBO:0065138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRKX pseudogene 1","termid":"PBO:0065138"}


id: PBO:0045264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein heavy chain domain 1","termid":"PBO:0045264"}


id: GO:0045291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The joining together of two independently transcribed RNAs, where the one that provides the 5' portion of the final mRNA is from a splice leader RNA (SL-RNA). The SL-RNA, or mini-exon donor sequence, is added to the 5'-end of the acceptor RNA molecule which provides the mRNA body.","definition_xrefs":["ISBN:0879695897","GOC:krc","PMID:2675423"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA trans splicing, via spliceosome","termid":"GO:0000365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0016071","GO:0010467"],"is_obsolete":false,"name":"mRNA trans splicing, SL addition","synonyms":[{"name":"nuclear mRNA trans splicing, SL addition","type":"exact"},{"name":"nuclear mRNA trans splicing, spliced leader addition","type":"exact"}],"termid":"GO:0045291"}


id: PBO:0002241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Swr1 complex subunit Swc3","termid":"PBO:0002241"}


id: GO:0009409
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to stress","termid":"GO:0006950"},{"relation_name":"is_a","term_name":"response to temperature stimulus","termid":"GO:0009266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cold","synonyms":[{"name":"freezing tolerance","type":"related"}],"termid":"GO:0009409"}


id: PBO:0000551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spore wall assembly protein (predicted)","termid":"PBO:0000551"}


id: PBO:0053724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 938","termid":"PBO:0053724"}


id: GO:0021932
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The radially directed movement of a cell along radial glial cells in the hindbrain. Radial migration refers to a directed movement from the internal ventricular area to the outer surface of the hindbrain.","definition_xrefs":["GOC:dgh","GO_REF:0000021","GOC:dph","GOC:jid","GOC:cls","PMID:15157725"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration in hindbrain","termid":"GO:0021535"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hindbrain radial glia guided cell migration","termid":"GO:0021932"}


id: PBO:0067891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 193","termid":"PBO:0067891"}


id: FYPO:0001716
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of succinate into the cell occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal succinate import","termid":"FYPO:0001715"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased succinate import","synonyms":[{"name":"decreased succinate import across plasma membrane","type":"exact"},{"name":"decreased succinate import during mitotic cell cycle","type":"related"},{"name":"decreased succinate import during vegetative growth","type":"exact"},{"name":"decreased succinate import into cell","type":"exact"},{"name":"decreased succinate uptake","type":"exact"},{"name":"decreased succinic acid import","type":"related"},{"name":"reduced succinate import","type":"exact"}],"termid":"FYPO:0001716"}


id: FYPO:0002349
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which stress granule assembly begins later than normal.","definition_xrefs":["PMID:21098141","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal stress granule assembly during vegetative growth","termid":"FYPO:0002347"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of stress granule assembly during vegetative growth","synonyms":[{"name":"delayed onset of cytoplasmic stress granule assembly during vegetative growth","type":"exact"},{"name":"delayed onset of stress granule assembly during mitotic cell cycle","type":"related"},{"name":"delayed onset of stress granule formation during vegetative growth","type":"exact"},{"name":"delayed stress granule assembly during vegetative growth","type":"exact"}],"termid":"FYPO:0002349"}


id: PBO:0089071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial phospholipid scramblase","termid":"PBO:0089071"}


id: SO:0001122
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A motif of two consecutive residues with dihedral angles: Residue(i): -140 degrees < phi < -20 degrees, -90 degrees < psi < +40 degrees. Residue(i+1): +20 degrees < phi < +140 degrees, -40 degrees < psi < +90 degrees.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_nest_motif","termid":"SO:0001120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"polypeptide_nest_right_left_motif","secondary_identifiers":["BS:00225"],"synonyms":[{"name":"nest_right_left","type":"exact"},{"name":"nest_rl","type":"exact"},{"name":"polypeptide nest right left motif","type":"exact"}],"termid":"SO:0001122"}


id: PBO:0046294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epithelial membrane protein 3","termid":"PBO:0046294"}


id: PBO:0086019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; associates with rDNA chromatin in vivo; TBS1 has a paralog, HAL9, that arose from the whole genome duplication","termid":"PBO:0086019"}


id: GO:0102800
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: anthocyanidin 3,5-di-O-beta-D-glucoside + caffeoyl-CoA = pelargonidin 3-O-(6-O-caffeoyl-beta-D-glucoside) 5-O-beta-D-glucoside + coenzyme A.","definition_xrefs":["GOC:pz","EC:2.3.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016746","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"caffeoyl-CoA:pelargonidin-3,5-diglucoside-6''-O-acyltransferase activity","secondary_identifiers":["MetaCyc:RXN-8138"],"termid":"GO:0102800"}


id: GO:0002514
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process involving any mechanism for tolerance induction in B cells.","definition_xrefs":["ISBN:0781735149","GOC:jal","PMID:16460922"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tolerance induction","termid":"GO:0002507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"B cell tolerance induction","synonyms":[{"name":"B lymphocyte tolerance induction","type":"exact"},{"name":"B-cell tolerance induction","type":"exact"},{"name":"B-lymphocyte tolerance induction","type":"exact"}],"termid":"GO:0002514"}


id: GO:0120513
data:
  {"annotated_genes":["SJAG_01058","SJAG_04085"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[101240,105704],"is_not":false,"summary":null,"term":"GO:0120513"}]},"cv_name":"cellular_component","definition":"A protein complex capable of catalysing the transfer of the 3-amino-3-carboxypropyl group from S-adenosyl-L-methionine (SAM) to the histidine residue of translation elongation factor 2 (EF2), which is the first step in the biosynthesis of diphthamide. The complex is a Dph2 homodimer in archaea and a Dph1-Dph2 heterodimer in eukaryotes.","definition_xrefs":["GOC:sjm","PMID:31463593","PMID:24422557"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01058":null,"SJAG_04085":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"2-(3-amino-3-carboxypropyl)histidine synthase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Dph1-Dph2 complex","type":"exact"}],"termid":"GO:0120513","terms_by_termid":{"GO:0120513":null}}


id: PBO:0054280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1671","termid":"PBO:0054280"}


id: PBO:0069284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 540, pseudogene","termid":"PBO:0069284"}


id: GO:0035149
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Creation of the central hole of a tube in an open tracheal system through which gases flow.","definition_xrefs":["GOC:bf","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube formation","termid":"GO:0035148"},{"relation_name":"is_a","term_name":"regulation of tube architecture, open tracheal system","termid":"GO:0035152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lumen formation, open tracheal system","synonyms":[{"name":"tracheal lumen formation","type":"exact"}],"termid":"GO:0035149"}


id: GO:0043309
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of eosinophil degranulation.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of myeloid leukocyte mediated immunity","termid":"GO:0002886"},{"relation_name":"is_a","term_name":"regulation of leukocyte degranulation","termid":"GO:0043300"},{"relation_name":"is_a","term_name":"regulation of immune response","termid":"GO:0050776"},{"relation_name":"regulates","term_name":"eosinophil degranulation","termid":"GO:0043308"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0008150","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"regulation of eosinophil degranulation","synonyms":[{"name":"regulation of eosinophil granule exocytosis","type":"exact"}],"termid":"GO:0043309"}


id: PBO:0050266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 44","termid":"PBO:0050266"}


id: GO:0002415
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of transporting polymeric IgA and polymeric IgM immunoglobulin, via transcytosis mediated by the polymeric immunoglobulin receptor (pIgR), from the basolateral surface to apical surface of an epithelial cell. At the apical surface the immunoglobulin binding portion of the pIgRis cleaved and remains bound to the transported immunoglobulin as secretory component (SC). The same process is used for the transport and excretion of IgA immune complexes to the luminal surface of the mucosa.","definition_xrefs":["ISBN:081533642X","ISBN:0781735149","PMID:16048543","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin transcytosis in epithelial cells","termid":"GO:0002414"},{"relation_name":"part_of","term_name":"mucosal immune response","termid":"GO:0002385"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0016192","GO:0051179"],"is_obsolete":false,"name":"immunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor","synonyms":[{"name":"antibody transcytosis mediated by pIgR","type":"exact"},{"name":"immunoglobulin transcytosis mediated by pIgR","type":"exact"}],"termid":"GO:0002415"}


id: GO:0007572
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete age dependent decreased translational activity (obsolete GO:0007572)","synonyms":[{"name":"age dependent decreased translational activity","type":"exact"}],"termid":"GO:0007572"}


id: MOD:00689
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that crosslinks two cysteine residues by formation of a disulfide bond.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multisulfide crosslinked residues","termid":"MOD:01619"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"disulfide crosslinked residues","termid":"MOD:00689"}


id: PBO:0002291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER protein translocation subcomplex subunit Sec72 (predicted)","termid":"PBO:0002291"}


id: PBO:0027771
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_error-prone_translesion_synthesis","termid":"PBO:0027771"}


id: GO:0140904
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process which results in the assembly, arrangement of constituent parts, or disassembly of a cytoophidium. Cytoophidia are mesoscale, intracellular, filamentous structures that contain metabolic enzymes.","definition_xrefs":["PMID:25223282","PMID:27362644"],"direct_ancestors":[{"relation_name":"is_a","term_name":"supramolecular fiber organization","termid":"GO:0097435"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cytoophidium organization","termid":"GO:0140904"}


id: PBO:0049461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycogenin 2 pseudogene 1","termid":"PBO:0049461"}


id: GO:0008915
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate + UDP-2,3-bis(3-hydroxytetradecanoyl)-D-glucosamine = 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-(1->6)-beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate + H+ + UDP.","definition_xrefs":["EC:2.4.1.182","RHEA:22668"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glycosyltransferase activity","termid":"GO:0008194"},{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016757","GO:0003824"],"is_obsolete":false,"name":"lipid-A-disaccharide synthase activity","secondary_identifiers":["MetaCyc:LIPIDADISACCHARIDESYNTH-RXN","KEGG_REACTION:R04606"],"synonyms":[{"name":"UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine:2,3-bis-(3-hydroxytetradecanoyl)-beta-D-glucosaminyl-1-phosphate 2,3-bis(3-hydroxytetradecanoyl)-glucosaminyltransferase activity","type":"related"}],"termid":"GO:0008915"}


id: PBO:0086040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function involved in DNA repair","termid":"PBO:0086040"}


id: PBO:0045508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"destrin, actin depolymerizing factor","termid":"PBO:0045508"}


id: PBO:0062555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily A member 2","termid":"PBO:0062555"}


id: GO:0018522
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 ADP + cyclohexa-1,5-diene-1-carbonyl-CoA + oxidized ferredoxin + 2 phosphate = 2 ATP + 2 H2O + benzoyl-CoA + reduced ferredoxin.","definition_xrefs":["EC:1.3.7.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor","termid":"GO:0016636"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"benzoyl-CoA reductase activity","secondary_identifiers":["MetaCyc:1.3.99.15-RXN","RHEA:30199","UM-BBD_reactionID:r0190","KEGG_REACTION:R02451"],"synonyms":[{"name":"benzoyl-CoA reductase (dearomatizing) activity","type":"related"},{"name":"cyclohexa-1,5-diene-1-carbonyl-CoA:ferredoxin oxidoreductase (aromatizing, ATP-forming) activity","type":"exact"}],"termid":"GO:0018522"}


id: GO:1905100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of apoptosome assembly.","definition_xrefs":["GO_REF:0000058","GOC:BHF_miRNA","GOC:TermGenie","PMID:26265044","GOC:BHF","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein-containing complex assembly","termid":"GO:0043254"},{"relation_name":"regulates","term_name":"apoptosome assembly","termid":"GO:0097314"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0044085","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"regulation of apoptosome assembly","synonyms":[{"name":"regulation of apoptosome formation","type":"exact"}],"termid":"GO:1905100"}


id: PBO:0061589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-coding transcript regulating alternative splicing","termid":"PBO:0061589"}


