# terms

id: GO:0140262
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a mRNA cap binding complex.","definition_xrefs":["PMID:16938833"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"mRNA cap binding complex binding","termid":"GO:0140262"}


id: GO:0008473
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-ornithine = L-proline + NH4.","definition_xrefs":["EC:4.3.1.12","RHEA:24368"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ammonia-lyase activity","termid":"GO:0016841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"ornithine cyclodeaminase activity","secondary_identifiers":["MetaCyc:ORNITHINE-CYCLODEAMINASE-RXN","KEGG_REACTION:R00671"],"synonyms":[{"name":"L-ornithine ammonia-lyase (cyclizing)","type":"related"},{"name":"L-ornithine ammonia-lyase (cyclizing; L-proline-forming)","type":"related"},{"name":"OCD activity","type":"related"},{"name":"ornithine cyclase (deaminating) activity","type":"related"},{"name":"ornithine cyclase activity","type":"related"}],"termid":"GO:0008473"}


id: GO:0001792
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a J-chain-containing polymeric immunoglobulin of the IgA or IgM isotypes via the Fc region, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["ISBN:0781735149","GOC:add","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin receptor activity","termid":"GO:0019763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"polymeric immunoglobulin receptor activity","termid":"GO:0001792"}


id: PBO:0091916
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae CWC23","termid":"PBO:0091916"}


id: GO:0000117
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that regulates transcription such that the target genes are transcribed as part of the G2/M transition of the mitotic cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription involved in G2/M transition of mitotic cell cycle (obsolete GO:0000117)","synonyms":[{"name":"G2/M-specific transcription in mitotic cell cycle","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter during G2/M transition of mitotic cell cycle","type":"related"}],"termid":"GO:0000117"}


id: PR:O59815
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC794.06 gene.","definition_xrefs":["UniProtKB:O59815","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malic acid transport protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC794.06","synonyms":[{"name":"Spom972h-SPCC794.06","type":"exact"},{"name":"malate permease (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O59815"}


id: PBO:0029888
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_stress_granule_assembly","termid":"PBO:0029888"}


id: GO:0016706
data:
  {"annotated_genes":["SJAG_03286","SJAG_03664","SJAG_05265","SJAG_04580","SJAG_03997","SJAG_00892","SJAG_01465","SJAG_00642","SJAG_03635","SJAG_00221","SJAG_03041","SJAG_02401"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90735,97244],"is_not":false,"summary":null,"term":"GO:0016706"},{"annotations":[108236,83472],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051864"},{"annotations":[113753],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140680"},{"annotations":[92696,109070,83474],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034647"},{"annotations":[90134,99244],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140683"},{"annotations":[90851],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106156"},{"annotations":[107721,107722],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031543"},{"annotations":[99112],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990984"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: A + 2-oxoglutarate + O2 = B + succinate + CO2. This is an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"},{"relation_name":"is_a","term_name":"dioxygenase activity","termid":"GO:0051213"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00221":null,"SJAG_00642":null,"SJAG_00892":null,"SJAG_01465":null,"SJAG_02401":null,"SJAG_03041":null,"SJAG_03286":null,"SJAG_03635":null,"SJAG_03664":null,"SJAG_03997":null,"SJAG_04580":null,"SJAG_05265":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"2-oxoglutarate-dependent dioxygenase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:1.14.11.-","GO:0010302","Reactome:R-HSA-1234164","Reactome:R-HSA-6783455"],"synonyms":[{"name":"2-oxoglutarate dioxygenase activity","type":"exact"},{"name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors","type":"exact"}],"termid":"GO:0016706","terms_by_termid":{"GO:0016706":null,"GO:0031543":null,"GO:0034647":null,"GO:0051864":null,"GO:0106156":null,"GO:0140680":null,"GO:0140683":null,"GO:1990984":null}}


id: SO:0001723
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is dimethylated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"H3K36_methylation_site","termid":"SO:0001733"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H3K36_dimethylation_site","synonyms":[{"name":"H3K36 di-methylation site","type":"exact"},{"name":"H3K36Me2","type":"related"}],"termid":"SO:0001723"}


id: FYPO:0000033
data:
  {"alleles_by_uniquename":{"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_04280:allele-2":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-2"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115440],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0001369"}],"single_locus_phenotype":[{"annotations":[115354],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0002026"},{"annotations":[115441],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0001369"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actomyosin contractile ring localization is abnormal. Actomyosin contractile ring localization is the part of cytokinesis in which the actomyosin contractile ring is assembled and/or maintained in a specific location.","definition_xrefs":["PomBase:mah","GO:1902405"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cytokinesis","termid":"FYPO:0000032"},{"relation_name":"is_a","term_name":"localization phenotype during vegetative growth","termid":"FYPO:0001337"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02392":null,"SJAG_04280":null,"SJAG_04522":null},"genotype_count":3,"genotypes_by_uniquename":{"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"rga4delta":{"display_name":"rga4delta","display_uniquename":"rga4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]}]},"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0000631","FYPO:0000032","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_04522","SJAG_04280"],"name":"abnormal actomyosin contractile ring localization","references_by_uniquename":{"PMID:25866389":null,"PMID:30664646":null},"single_locus_annotated_genes":["SJAG_04522","SJAG_02392"],"single_locus_genotype_uniquenames":["rga4delta","pom1delta"],"synonyms":[{"name":"abnormal actomyosin contractile ring localisation","type":"exact"},{"name":"abnormal actomyosin contractile ring localization during mitotic cell cycle","type":"related"},{"name":"abnormal actomyosin contractile ring localization during vegetative growth","type":"exact"},{"name":"abnormal actomyosin contractile ring localization involved in mitotic cytokinesis","type":"exact"},{"name":"abnormal actomyosin contractile ring positioning","type":"exact"},{"name":"abnormal cytokinetic contractile ring localization","type":"exact"},{"name":"abnormal mitotic contractile ring localization","type":"exact"},{"name":"cytokinesis defects, misplaced contractile ring","type":"exact"}],"termid":"FYPO:0000033","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYECO:0000338":null,"FYPO:0001369":null,"FYPO:0002026":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: PR:O60099
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- trs65 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60099"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C14F5.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC14F5.02","synonyms":[{"name":"Spom972h-trs65","type":"exact"}],"termid":"PR:O60099"}


id: PBO:0086008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; subunit of the leading edge protein (LEP) complex (Ssp1-Ady3-Don1-Irc10) that forms a ring-like structure at the leading edge of the prospore membrane during meiosis II; null mutant displays increased levels of spontaneous Rad52p foci","termid":"PBO:0086008"}


id: PBO:0028623
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_U2/U5/U6_snRNP_complex_assembly","termid":"PBO:0028623"}


id: GO:1902518
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclophosphamide stimulus.","definition_xrefs":["GOC:dw","GOC:TermGenie","PMID:23648065"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cyclophosphamide","termid":"GO:1902518"}


id: PBO:0063632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"profilin 1 pseudogene 10","termid":"PBO:0063632"}


id: PBO:0076932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor EC","termid":"PBO:0076932"}


id: GO:0048825
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the cotyledon over time, from its formation to the mature structure. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling.","definition_xrefs":["PO:0020030","GOC:devbiol","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryo development ending in seed dormancy","termid":"GO:0009793"},{"relation_name":"is_a","term_name":"leaf development","termid":"GO:0048366"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cotyledon development","termid":"GO:0048825"}


id: SO:0000931
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of a guide_RNA that base-pairs to a target mRNA.","definition_xrefs":["SO:jk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guide_RNA_region","termid":"SO:0000930"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anchor_region","synonyms":[{"name":"anchor region","type":"exact"}],"termid":"SO:0000931"}


id: PBO:0053934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1233","termid":"PBO:0053934"}


id: PBO:0068959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 203, pseudogene","termid":"PBO:0068959"}


id: PBO:0087486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of cohesin loading factor (Scc2p-Scc4p); complex is required for the loading of cohesin complexes onto chromosomes; involved in establishing sister chromatid cohesion during double-strand break repair via phosphorylated histone H2AX","termid":"PBO:0087486"}


id: PBO:0059613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 25","termid":"PBO:0059613"}


id: PBO:0088765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome assembly chaperone, gankyrin","termid":"PBO:0088765"}


id: FYPO:0002583
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of mature transfer RNA (tRNA) measured in a cell is lower than normal. Total tRNA or a specific tRNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered mature tRNA level during vegetative growth","termid":"FYPO:0002579"},{"relation_name":"is_a","term_name":"decreased mature ncRNA level","termid":"FYPO:0006466"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0006551","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased mature tRNA level during vegetative growth","synonyms":[{"name":"decreased mature tRNA accumulation during vegetative growth","type":"related"},{"name":"decreased mature tRNA level during mitotic cell cycle","type":"related"},{"name":"decreased mature tRNA transcript level during vegetative growth","type":"exact"},{"name":"decreased mature transfer RNA level during vegetative growth","type":"exact"},{"name":"decreased tRNA level during vegetative growth","type":"broad"},{"name":"reduced mature tRNA level during vegetative growth","type":"exact"}],"termid":"FYPO:0002583"}


id: GO:0050065
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-lysine + pyruvate = L-alanine + L-allysine.","definition_xrefs":["EC:2.6.1.71","RHEA:19393"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016769","GO:0003674"],"is_obsolete":false,"name":"lysine-pyruvate 6-transaminase activity","secondary_identifiers":["MetaCyc:PWY-5324","KEGG_REACTION:R00453","MetaCyc:LYSINE--PYRUVATE-6-AMINOTRANSFERASE-RXN"],"synonyms":[{"name":"L-lysine:pyruvate aminotransferase activity","type":"related"},{"name":"Lys-AT","type":"related"},{"name":"lysine--pyruvate 6-aminotransferase activity","type":"exact"},{"name":"lysine-pyruvate aminotransferase activity","type":"related"}],"termid":"GO:0050065"}


id: PBO:0017810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pig-U, Gab1 (predicted)","termid":"PBO:0017810"}


id: PBO:0034419
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-requires_regulation_by_(obsolete_requires_regulation_by)","termid":"PBO:0034419"}


id: PBO:0028079
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_vegetative_cell_phenotype","termid":"PBO:0028079"}


id: PBO:0059811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 37","termid":"PBO:0059811"}


id: PBO:0053676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 861","termid":"PBO:0053676"}


id: PBO:0048928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgi membrane protein 1","termid":"PBO:0048928"}


id: PBO:0051731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrator complex subunit 4","termid":"PBO:0051731"}


id: PBO:0071048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 50","termid":"PBO:0071048"}


id: GO:0045989
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of striated muscle contraction.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of striated muscle contraction","termid":"GO:0006942"},{"relation_name":"is_a","term_name":"positive regulation of muscle contraction","termid":"GO:0045933"},{"relation_name":"positively_regulates","term_name":"striated muscle contraction","termid":"GO:0006941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of striated muscle contraction","synonyms":[{"name":"activation of striated muscle contraction","type":"narrow"},{"name":"stimulation of striated muscle contraction","type":"narrow"},{"name":"up regulation of striated muscle contraction","type":"exact"},{"name":"up-regulation of striated muscle contraction","type":"exact"},{"name":"upregulation of striated muscle contraction","type":"exact"}],"termid":"GO:0045989"}


id: GO:0046430
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving non-phosphorylated forms of glucose.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucose metabolic process","termid":"GO:0006006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"non-phosphorylated glucose metabolic process","synonyms":[{"name":"non-phosphorylated glucose metabolism","type":"exact"}],"termid":"GO:0046430"}


id: PBO:0038878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylate cyclase 5","termid":"PBO:0038878"}


id: PBO:0054070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1418","termid":"PBO:0054070"}


id: PBO:0083658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endonuclease required for telomere elongation; required for telomeric 5' C-rich strand resection; involved in ds-break repair and processing hairpin DNA structures with the MRX complex; function requires sumoylation and phosphorylation; exists as inactive oligomers that are transiently released into smaller active units by phosphorylation; DNA damage triggers Sae2p removal, so active Sae2p is present only transiently; sequence and functional similarity with human CtIP/RBBP8","termid":"PBO:0083658"}


id: PBO:0057857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3168","termid":"PBO:0057857"}


id: FYPO:0004792
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the distance between one or more telomeres and the nuclear envelope is smaller than normal during G2 phase of the mitotic cell cycle.","definition_xrefs":["PMID:22959349","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal telomere-nuclear envelope distance during vegetative growth","termid":"FYPO:0004790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"decreased telomere-nuclear envelope distance during mitotic G2 phase","synonyms":[{"name":"decreased distance between telomeres and nuclear envelope during mitotic G2 phase","type":"exact"},{"name":"decreased telomere-nuclear envelope distance during G2 phase during mitotic cell cycle","type":"related"},{"name":"decreased telomere-nuclear envelope distance during mitotic G2 phase during vegetative growth","type":"exact"},{"name":"reduced telomere-nuclear envelope distance during mitotic G2 phase","type":"exact"}],"termid":"FYPO:0004792"}


id: PBO:0087207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-adenosylmethionine-dependent methyltransferase; novel N-terminal protein methyltransferase that trimethylates the N-terminal glycine residue (G2) and also dimethylates lysine (K3) on elongation factor eEF1A (Tef1p/Tef2p); has a role in rDNA silencing and in lifespan determination","termid":"PBO:0087207"}


id: PBO:0063825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatase, orphan 2","termid":"PBO:0063825"}


id: GO:0050491
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD+ + sulcatol = H+ + NADH + sulcatone.","definition_xrefs":["EC:1.1.1.260","RHEA:24484"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"sulcatone reductase activity","secondary_identifiers":["KEGG_REACTION:R05678","MetaCyc:1.1.1.260-RXN"],"synonyms":[{"name":"sulcatol:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0050491"}


id: PBO:0083219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps verified gene KCC4/YCL024W","termid":"PBO:0083219"}


id: PR:O74446
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sif2 gene.","definition_xrefs":["UniProtKB:O74446","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sad1-interacting factor 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16C4.01","synonyms":[{"name":"Spom972h-sif2","type":"exact"},{"name":"sporulation protein sif2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74446"}


id: PBO:0003687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfate adenylyltransferase","termid":"PBO:0003687"}


id: GO:0015156
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of melibiose from one side of a membrane to the other. Melibiose is the disaccharide 6-O-alpha-D-galactopyranosyl-D-glucose and occurs as a constituent of the trisaccharide raffinose or in the exudates and nectaries of a number of plants.","definition_xrefs":["GOC:mtg_transport","ISBN:0198506732","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disaccharide transmembrane transporter activity","termid":"GO:0015154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"melibiose transmembrane transporter activity","termid":"GO:0015156"}


id: GO:1990008
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A large cytoplasmic membrane-bounded vesicle with an electron dense granular core, up to 150-200 nm in diameter, found in neurosecretory cells in the hypothalamus.","definition_xrefs":["NIF_Subcellular:sao2031592629","ISBN:0195065719"],"direct_ancestors":[{"relation_name":"is_a","term_name":"granular vesicle","termid":"GO:1990005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"neurosecretory vesicle","termid":"GO:1990008"}


id: PBO:0084390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Low-affinity zinc transporter of the plasma membrane; transcription is induced under low-zinc conditions by the Zap1p transcription factor","termid":"PBO:0084390"}


id: PBO:0083319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps ORF IMA3/YIL172C","termid":"PBO:0083319"}


id: GO:1990466
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The sumoylation by a protein of one or more of its own amino acid residues, or residues on an identical protein.","definition_xrefs":["PMID:21518767","PMID:23443663"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein sumoylation","termid":"GO:0016925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0008150","GO:0070647"],"is_obsolete":false,"name":"protein autosumoylation","synonyms":[{"name":"protein auto-sumoylation","type":"exact"},{"name":"protein self-sumoylation","type":"exact"}],"termid":"GO:1990466"}


id: PBO:0029251
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_medial_cortical_node","termid":"PBO:0029251"}


id: FYPO:0006826
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to 4-fluorophenylalanine. Cells stop growing (and may die) at a concentration of 4-fluorophenylalanine that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0001985","FYPO:0005447","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to 4-fluorophenylalanine","synonyms":[{"name":"hypersensitive to 4-fluorophenylalanine","type":"exact"},{"name":"sensitive to 4-fluorophenylalanine during mitotic cell cycle","type":"related"},{"name":"sensitive to 4-fluorophenylalanine during vegetative growth","type":"exact"},{"name":"sensitive to p-fluoro-phenylalanine","type":"exact"},{"name":"sensitive to p-fluorophenylalanine","type":"exact"}],"termid":"FYPO:0006826"}


id: PBO:0002455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial cruciform cutting endonuclease Cce1","termid":"PBO:0002455"}


id: PBO:0040868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bcl2 modifying factor","termid":"PBO:0040868"}


id: PBO:0029959
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_ubiquinol-cytochrome-c_reductase_activity","termid":"PBO:0029959"}


id: GO:0043665
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The soluble material inside the peribacteroid membrane, but outside of the bacteroid, within a bacteroid-containing symbiosome of a host cell.","definition_xrefs":["GOC:cc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"},{"relation_name":"part_of","term_name":"host bacteroid-containing symbiosome","termid":"GO:0043663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host peribacteroid fluid","termid":"GO:0043665"}


id: GO:0042984
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of amyloid precursor protein (APP), the precursor of amyloid-beta.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glycoprotein biosynthetic process","termid":"GO:0010559"},{"relation_name":"regulates","term_name":"amyloid precursor protein biosynthetic process","termid":"GO:0042983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of amyloid precursor protein biosynthetic process","synonyms":[{"name":"regulation of APP biosynthesis","type":"exact"},{"name":"regulation of APP biosynthetic process","type":"exact"},{"name":"regulation of amyloid precursor protein anabolism","type":"exact"},{"name":"regulation of amyloid precursor protein biosynthesis","type":"exact"},{"name":"regulation of amyloid precursor protein formation","type":"exact"},{"name":"regulation of amyloid precursor protein synthesis","type":"exact"}],"termid":"GO:0042984"}


id: GO:0050114
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,4,6/3,5-pentahydroxycyclohexanone = 3D-3,5/4-trihydroxycyclohexane-1,2-dione + H2O.","definition_xrefs":["EC:4.2.1.44","RHEA:14065"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"myo-inosose-2 dehydratase activity","secondary_identifiers":["KEGG_REACTION:R02782","MetaCyc:MYO-INOSOSE-2-DEHYDRATASE-RXN"],"synonyms":[{"name":"2,4,6/3,5-pentahydroxycyclohexanone hydro-lyase (3,5/4-trihydroxycyclohexa-1,2-dione-forming)","type":"related"},{"name":"2,4,6/3,5-pentahydroxycyclohexanone hydro-lyase activity","type":"related"},{"name":"inosose 2,3-dehydratase activity","type":"related"},{"name":"ketoinositol dehydratase activity","type":"related"}],"termid":"GO:0050114"}


id: GO:0043698
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A tissue-specific, membrane-bounded cytoplasmic organelle within which purines crystalize in reflective stacks. Iridosomes are synthesized in iridophore cells and are silver, gold or iridescent in appearance.","definition_xrefs":["GOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pigment granule","termid":"GO:0048770"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"iridosome","synonyms":[{"name":"reflecting platelet","type":"exact"}],"termid":"GO:0043698"}


id: PBO:0074933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 100","termid":"PBO:0074933"}


id: PBO:0060038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4 pseudogene 26","termid":"PBO:0060038"}


id: MOD:00639
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:332"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"phosphorus containing modified residue","termid":"MOD:00861"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiophosphate labeled with biotin-HPDP","synonyms":[{"name":"Thiophos-S-S-biotin","type":"related"},{"name":"thiophosphate labeled with biotin-HPDP","type":"related"}],"termid":"MOD:00639"}


id: GO:1990958
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thyrotropin-releasing hormone (TRH) stimulus. TRH increases the secretion of thyroid-stimulating hormone by the anterior pituitary.","definition_xrefs":["PMID:21382270"],"gene_count":0,"genotype_count":0,"name":"obsolete response to thyrotropin-releasing hormone (obsolete GO:1990958)","synonyms":[{"name":"response to TRH","type":"related"}],"termid":"GO:1990958"}


id: GO:0042242
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the conversion of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide.","definition_xrefs":["RHEA:26289","PMID:2172209"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-nitrogen ligase activity, with glutamine as amido-N-donor","termid":"GO:0016884"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016874","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"cobyrinic acid a,c-diamide synthase activity","secondary_identifiers":["EC:6.3.5.11","GO:0043775"],"synonyms":[{"name":"CobB","type":"narrow"},{"name":"cobyrinate a c diamide synthase activity","type":"exact"},{"name":"cobyrinate a c-diamide synthase activity","type":"exact"},{"name":"cobyrinate a,c diamide synthase activity","type":"exact"},{"name":"cobyrinate a,c-diamide synthase activity","type":"exact"}],"termid":"GO:0042242"}


id: PBO:0059512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded replication primer","termid":"PBO:0059512"}


id: GO:2000886
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a glucuronoxylan.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucuronoxylan metabolic process","termid":"GO:0010413"},{"relation_name":"is_a","term_name":"xylan catabolic process","termid":"GO:0045493"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0071554"],"is_obsolete":false,"name":"glucuronoxylan catabolic process","synonyms":[{"name":"glucuronoxylan catabolism","type":"exact"}],"termid":"GO:2000886"}


id: FYPO:0002282
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is inviable, is curved along the long axis, and has one or more septa.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable curved vegetative cell","termid":"FYPO:0002113"},{"relation_name":"is_a","term_name":"inviable septated vegetative cell with abnormal cell morphology","termid":"FYPO:0002452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000005","FYPO:0000004","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"inviable curved septated vegetative cell","synonyms":[{"name":"inviable curved septated cell during vegetative growth","type":"exact"},{"name":"inviable curved septated vegetative cell during mitotic cell cycle","type":"related"},{"name":"lethal; curved septated vegetative cell","type":"exact"}],"termid":"FYPO:0002282"}


id: PBO:0048281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polypeptide N-acetylgalactosaminyltransferase 16","termid":"PBO:0048281"}


id: PBO:0049075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 101","termid":"PBO:0049075"}


id: GO:0006583
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of melanin from other compounds, including tyrosine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tyrosine metabolic process","termid":"GO:0006570"},{"relation_name":"is_a","term_name":"melanin biosynthetic process","termid":"GO:0042438"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0019748","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"melanin biosynthetic process from tyrosine","synonyms":[{"name":"melanin anabolism from tyrosine","type":"exact"},{"name":"melanin formation from tyrosine","type":"exact"},{"name":"melanin synthesis from tyrosine","type":"exact"}],"termid":"GO:0006583"}


id: GO:0034467
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by the membrane of an esterosome.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle lumen","termid":"GO:0060205"},{"relation_name":"part_of","term_name":"esterosome","termid":"GO:0033117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"esterosome lumen","termid":"GO:0034467"}


id: GO:0015882
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which L-ascorbic acid is transported across a lipid bilayer, from one side of a membrane to the other. L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, is vitamin C and has co-factor and anti-oxidant activities in many species.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monosaccharide transmembrane transport","termid":"GO:0015749"},{"relation_name":"is_a","term_name":"vitamin transmembrane transport","termid":"GO:0035461"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"L-ascorbic acid transmembrane transport","synonyms":[{"name":"L-ascorbate transport","type":"exact"},{"name":"L-ascorbic acid transport","type":"related"},{"name":"vitamin C transport","type":"exact"}],"termid":"GO:0015882"}


id: GO:0015954
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways by which a pyrimidine ribonucleotide is synthesized from another pyrimidine ribonucleotide.","definition_xrefs":["GOC:mah","ISBN:0471394831","ISBN:0306444747"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine ribonucleotide metabolic process","termid":"GO:0009218"},{"relation_name":"is_a","term_name":"pyrimidine nucleotide interconversion","termid":"GO:0015953"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"pyrimidine ribonucleotide interconversion","termid":"GO:0015954"}


id: GO:0047567
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-methyloxindole + NADP+ = 3-methyleneoxindole + H+ + NADPH.","definition_xrefs":["RHEA:20257","EC:1.3.1.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"3-methyleneoxindole reductase activity","secondary_identifiers":["MetaCyc:3-METHYLENEOXINDOLE-REDUCTASE-RXN","KEGG_REACTION:R03930"],"synonyms":[{"name":"3-methyl-1,3-dihydroindol-2-one:NADP+ oxidoreductase activity","type":"related"},{"name":"3-methyloxindole:NADP+ oxidoreductase activity","type":"related"}],"termid":"GO:0047567"}


id: PBO:0056339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase kinase kinase 21","termid":"PBO:0056339"}


id: PBO:0057688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1277","termid":"PBO:0057688"}


id: GO:0006145
data:
  {"annotated_genes":["SJAG_04299","SJAG_04297","SJAG_05287","SJAG_01997"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87821,110073],"is_not":false,"summary":null,"term":"GO:0006145"},{"annotations":[111033],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006147"},{"annotations":[113363],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009115"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleobase metabolic process","termid":"GO:0006144"},{"relation_name":"is_a","term_name":"nucleobase catabolic process","termid":"GO:0046113"},{"relation_name":"is_a","term_name":"purine-containing compound catabolic process","termid":"GO:0072523"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01997":null,"SJAG_04297":null,"SJAG_04299":null,"SJAG_05287":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"purine nucleobase catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"purine base breakdown","type":"exact"},{"name":"purine base catabolic process","type":"exact"},{"name":"purine base catabolism","type":"exact"},{"name":"purine base degradation","type":"exact"}],"termid":"GO:0006145","terms_by_termid":{"GO:0006145":null,"GO:0006147":null,"GO:0009115":null}}


id: PBO:0043030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"charged multivesicular body protein 4A","termid":"PBO:0043030"}


id: PBO:0038547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABHD17A pseudogene 1","termid":"PBO:0038547"}


id: PBO:0003422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"condensin complex subunit Cut3","termid":"PBO:0003422"}


id: PBO:0041268
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C1q like 1","termid":"PBO:0041268"}


id: SO:0001376
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"5_methyldihydrouridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_methyldihydrouridine","secondary_identifiers":["RNAMOD:093"],"synonyms":[{"name":"5-methyldihydrouridine","type":"exact"},{"name":"five methyldihydrouridine","type":"exact"},{"name":"m5D","type":"exact"}],"termid":"SO:0001376"}


id: PR:Q09669
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An alcohol dehydrogenase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00054","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alcohol dehydrogenase 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC5H10.06c","secondary_identifiers":["UniProtKB:Q09669"],"synonyms":[{"name":"Spom972h-yiaY","type":"exact"},{"name":"alcohol dehydrogenase IV (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09669"}


id: GO:0010595
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of the orderly movement of an endothelial cell into the extracellular matrix to form an endothelium.","definition_xrefs":["GOC:BHF","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endothelial cell migration","termid":"GO:0010594"},{"relation_name":"is_a","term_name":"positive regulation of epithelial cell migration","termid":"GO:0010634"},{"relation_name":"positively_regulates","term_name":"endothelial cell migration","termid":"GO:0043542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of endothelial cell migration","termid":"GO:0010595"}


id: PBO:0083437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YOL036W","termid":"PBO:0083437"}


id: GO:0042847
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of sorbose, the ketohexose xylo-2-hexulose. Sorbose is produced commercially by fermentation and is used as an intermediate in the manufacture of ascorbic acid.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sorbose metabolic process","termid":"GO:0019311"},{"relation_name":"is_a","term_name":"hexose biosynthetic process","termid":"GO:0019319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"sorbose biosynthetic process","synonyms":[{"name":"sorbose anabolism","type":"exact"},{"name":"sorbose biosynthesis","type":"exact"},{"name":"sorbose formation","type":"exact"},{"name":"sorbose synthesis","type":"exact"}],"termid":"GO:0042847"}


id: GO:1901348
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of secondary cell wall biogenesis.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component biogenesis","termid":"GO:0044089"},{"relation_name":"is_a","term_name":"positive regulation of cell wall organization or biogenesis","termid":"GO:1903340"},{"relation_name":"is_a","term_name":"regulation of secondary cell wall biogenesis","termid":"GO:2000652"},{"relation_name":"positively_regulates","term_name":"plant-type secondary cell wall biogenesis","termid":"GO:0009834"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0071554"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0071554","GO:0044085"],"is_obsolete":false,"name":"positive regulation of secondary cell wall biogenesis","synonyms":[{"name":"activation of cellulose and pectin-containing secondary cell wall biogenesis","type":"exact"},{"name":"activation of plant-type secondary cell wall biogenesis","type":"exact"},{"name":"activation of secondary cell wall anabolism","type":"broad"},{"name":"activation of secondary cell wall biogenesis","type":"narrow"},{"name":"activation of secondary cell wall biosynthetic process","type":"broad"},{"name":"activation of secondary cell wall formation","type":"broad"},{"name":"activation of secondary cell wall synthesis","type":"broad"},{"name":"positive regulation of cellulose and pectin-containing secondary cell wall biogenesis","type":"exact"},{"name":"positive regulation of plant-type secondary cell wall biogenesis","type":"exact"},{"name":"positive regulation of secondary cell wall anabolism","type":"broad"},{"name":"positive regulation of secondary cell wall biosynthetic process","type":"broad"},{"name":"positive regulation of secondary cell wall formation","type":"broad"},{"name":"positive regulation of secondary cell wall synthesis","type":"broad"},{"name":"up regulation of cellulose and pectin-containing secondary cell wall biogenesis","type":"exact"},{"name":"up regulation of plant-type secondary cell wall biogenesis","type":"exact"},{"name":"up regulation of secondary cell wall anabolism","type":"broad"},{"name":"up regulation of secondary cell wall biogenesis","type":"exact"},{"name":"up regulation of secondary cell wall biosynthetic process","type":"broad"},{"name":"up regulation of secondary cell wall formation","type":"broad"},{"name":"up regulation of secondary cell wall synthesis","type":"broad"},{"name":"up-regulation of cellulose and pectin-containing secondary cell wall biogenesis","type":"exact"},{"name":"up-regulation of plant-type secondary cell wall biogenesis","type":"exact"},{"name":"up-regulation of secondary cell wall anabolism","type":"broad"},{"name":"up-regulation of secondary cell wall biogenesis","type":"exact"},{"name":"up-regulation of secondary cell wall biosynthetic process","type":"broad"},{"name":"up-regulation of secondary cell wall formation","type":"broad"},{"name":"up-regulation of secondary cell wall synthesis","type":"broad"},{"name":"upregulation of cellulose and pectin-containing secondary cell wall biogenesis","type":"exact"},{"name":"upregulation of plant-type secondary cell wall biogenesis","type":"exact"},{"name":"upregulation of secondary cell wall anabolism","type":"broad"},{"name":"upregulation of secondary cell wall biogenesis","type":"exact"},{"name":"upregulation of secondary cell wall biosynthetic process","type":"broad"},{"name":"upregulation of secondary cell wall formation","type":"broad"},{"name":"upregulation of secondary cell wall synthesis","type":"broad"}],"termid":"GO:1901348"}


id: PBO:0068836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 74, pseudogene","termid":"PBO:0068836"}


id: GO:0002837
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of an immune response to tumor cell.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to tumor cell","termid":"GO:0002834"},{"relation_name":"is_a","term_name":"regulation of immune response","termid":"GO:0050776"},{"relation_name":"regulates","term_name":"immune response to tumor cell","termid":"GO:0002418"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of immune response to tumor cell","synonyms":[{"name":"regulation of immune response to tumour cell","type":"exact"}],"termid":"GO:0002837"}


id: PBO:0026728
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_regulation_of_translation_in_response_to_osmotic_stress","termid":"PBO:0026728"}


id: SO:0001189
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An oligo composed of LNA residues.","definition_xrefs":["RSC:cb"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"LNA","termid":"SO:0001188"},{"relation_name":"is_a","term_name":"synthetic_oligo","termid":"SO:0001247"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LNA_oligo","secondary_identifiers":["http://en.wikipedia.org/wiki/Locked_nucleic_acid"],"synonyms":[{"name":"LNA oligo","type":"exact"},{"name":"locked nucleic acid","type":"exact"}],"termid":"SO:0001189"}


id: PBO:0047537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor 3","termid":"PBO:0047537"}


id: PBO:0004679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBX domain protein Ubx4 (predicted)","termid":"PBO:0004679"}


id: GO:1990838
data:
  {"annotated_genes":["SJAG_01798"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[89771],"is_not":false,"summary":null,"term":"GO:1990838"}]},"cv_name":"molecular_function","definition":"Catalysis of 3' exonucleolytic cleavage of poly(U), to form poly(U)-N containing a 3' uridine cyclic phosphate (U>P).","definition_xrefs":["PMID:23022480"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3'-5'-RNA exonuclease activity","termid":"GO:0000175"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01798":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0004527"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016788","GO:0140098","GO:0004527"],"is_obsolete":false,"name":"poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990838","terms_by_termid":{"GO:1990838":null}}


id: PBO:0046137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 5A2 pseudogene 1","termid":"PBO:0046137"}


id: PBO:0067710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal 8","termid":"PBO:0067710"}


id: GO:1905637
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mitochondrial mRNA catabolic process.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:27122350"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitochondrial RNA catabolic process","termid":"GO:0000960"},{"relation_name":"is_a","term_name":"regulation of mRNA catabolic process","termid":"GO:0061013"},{"relation_name":"regulates","term_name":"mitochondrial mRNA catabolic process","termid":"GO:0000958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0016071"],"is_obsolete":false,"name":"regulation of mitochondrial mRNA catabolic process","termid":"GO:1905637"}


id: GO:0001541
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure.","direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"female gonad development","termid":"GO:0008585"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ovarian follicle development","synonyms":[{"name":"follicular phase","type":"related"}],"termid":"GO:0001541"}


id: PBO:0079525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trypsin like peroxisomal matrix peptidase 1","termid":"PBO:0079525"}


id: PBO:0070730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10a","termid":"PBO:0070730"}


id: PATO:0002147
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A virulence that is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"virulence","termid":"PATO:0002146"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reduced virulence","synonyms":[{"name":"attenuated","type":"exact"}],"termid":"PATO:0002147"}


id: GO:0007361
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Specification of the borders of posterior gap gene expression mediated largely by the effects of other gap genes; in insects this is exemplified by hunchback and tailless repression of knirps.","definition_xrefs":["ISBN:0879694238"],"gene_count":0,"genotype_count":0,"name":"obsolete establishment of posterior gap gene boundaries (obsolete GO:0007361)","termid":"GO:0007361"}


id: GO:0019016
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A viral genome that consists of one continuous nucleic acid molecule.","definition_xrefs":["GOC:pk"],"gene_count":0,"genotype_count":0,"name":"obsolete non-segmented viral genome (obsolete GO:0019016)","termid":"GO:0019016"}


id: PBO:0041391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 5 open reading frame 60","termid":"PBO:0041391"}


id: PBO:0041732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium/calmodulin dependent protein kinase IV","termid":"PBO:0041732"}


id: GO:0090474
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any protein processing achieved by the cleavage of a peptide bond after two consecutive arginine amino acid residues within a protein.","definition_xrefs":["GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dibasic protein processing","termid":"GO:0090472"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0051604"],"is_obsolete":false,"name":"arg-arg specific dibasic protein processing","termid":"GO:0090474"}


id: PBO:0052657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 25","termid":"PBO:0052657"}


id: GO:0007392
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Events that occur at the start of dorsal closure.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"dorsal closure","termid":"GO:0007391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"initiation of dorsal closure","termid":"GO:0007392"}


id: PBO:0053143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lactate dehydrogenase A like 6E, pseudogene","termid":"PBO:0053143"}


id: GO:0003217
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of a cardiac right atrium from unspecified parts.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac atrium formation","termid":"GO:0003210"},{"relation_name":"part_of","term_name":"cardiac right atrium morphogenesis","termid":"GO:0003213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac right atrium formation","termid":"GO:0003217"}


id: GO:0050603
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: AH(2) + O2 + thiophene-2-carbonyl-CoA = 5-hydroxythiophene-2-carbonyl-CoA + A + H2O + H+.","definition_xrefs":["RHEA:18929","EC:1.14.99.35"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"thiophene-2-carbonyl-CoA monooxygenase activity","secondary_identifiers":["UM-BBD_reactionID:r1235","MetaCyc:1.14.99.35-RXN","KEGG_REACTION:R05742"],"synonyms":[{"name":"thiophene-2-carbonyl-CoA, hydrogen-donor:oxygen oxidoreductase activity","type":"related"},{"name":"thiophene-2-carboxyl-CoA dehydrogenase activity","type":"related"},{"name":"thiophene-2-carboxyl-CoA hydroxylase activity","type":"related"},{"name":"thiophene-2-carboxyl-CoA monooxygenase activity","type":"related"}],"termid":"GO:0050603"}


id: PBO:0043134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capicua transcriptional repressor pseudogene 2","termid":"PBO:0043134"}


id: PBO:0029687
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_level_of_iron_ion_starvation-repressed_proteins","termid":"PBO:0029687"}


id: PBO:0047476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"farnesyl diphosphate synthase pseudogene 3","termid":"PBO:0047476"}


id: GO:0044586
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a cellotetraose, an oligosaccharide consisting of four glucose residues resulting from hydrolysis of cellulose.","definition_xrefs":["GOC:tt","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide binding","termid":"GO:0070492"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"cellotetraose binding","termid":"GO:0044586"}


id: PBO:0072970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretoglobin family 1C member 2","termid":"PBO:0072970"}


id: PBO:0041390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 5 open reading frame 58","termid":"PBO:0041390"}


id: GO:1904326
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of circadian sleep/wake cycle, wakefulness.","definition_xrefs":["GOC:TermGenie","PMID:10923657","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of circadian sleep/wake cycle, wakefulness","termid":"GO:0010840"},{"relation_name":"is_a","term_name":"negative regulation of circadian rhythm","termid":"GO:0042754"},{"relation_name":"is_a","term_name":"negative regulation of behavior","termid":"GO:0048521"},{"relation_name":"negatively_regulates","term_name":"circadian sleep/wake cycle, wakefulness","termid":"GO:0042746"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of circadian sleep/wake cycle, wakefulness","synonyms":[{"name":"down regulation of circadian sleep/wake cycle, wakefulness","type":"exact"},{"name":"down-regulation of circadian sleep/wake cycle, wakefulness","type":"exact"},{"name":"downregulation of circadian sleep/wake cycle, wakefulness","type":"exact"},{"name":"inhibition of circadian sleep/wake cycle, wakefulness","type":"narrow"}],"termid":"GO:1904326"}


id: PBO:0113040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chaperone for eEF1A; ribosome-associated chaperone dedicated to facilitating high-level expression of eEF1A; transiently binds nascent GTPase domain of eEF1A as soon as it emerges from ribosome tunnel; forms complex with NAC by binding UBA domain of Egd2p; inactivation results in disturbed proteostasis and Hsf1p activation due to abberant eEF1A biogenesis; overlapping phenotypes support notion that Chp1p functions in same eEF1A biogenesis pathway as chaperone Zpr1p-Aim29p","termid":"PBO:0113040"}


id: PBO:0040275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atos homolog A","termid":"PBO:0040275"}


id: GO:0034941
data:
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id: GO:0086077
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id: GO:1901758
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id: PBO:0017508
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id: FYPO:0009088
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id: PBO:0076935
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id: GO:0031710
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id: GO:1902512
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id: GO:0005606
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id: PBO:0056861
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id: GO:0140306
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id: GO:0090407
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id: GO:0160174
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular developmental process by which the outer layer of the cell (the cortex) rotates relative to the inner cytoplasm.","definition_xrefs":["PMID:37983969","PMID:22949618","PMID:25077289"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular developmental process","termid":"GO:0048869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cortical rotation","termid":"GO:0160174"}


id: PBO:0113047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chromosome linkage inner nuclear membrane protein; CLIP, involved in perinuclear chromosome tethering and rDNA repeat stability; enriched at telomeres and subtelomeric regions; associates with and regulates subtelomeric genes, interacting with TREX (transcription export) factors; produces two splice variants with different functions; alternative splicing of SRC1 pre-mRNA is promoted by Hub1p; mutant is aneuploidy tolerant; SRC1 has a paralog, HEH2, that arose from the whole genome duplication","termid":"PBO:0113047"}


id: GO:0097162
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a MADS box domain, a protein domain that encodes the DNA-binding MADS domain. The MADS domain binds to DNA sequences of high similarity to the motif CC[A/T]6GG termed the CArG-box. MADS-domain proteins are generally transcription factors. The length of the MADS-box is in the range of 168 to 180 base pairs.","definition_xrefs":["InterPro:IPR002100","PMID:18296735","Wikipedia:MADS-box","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"MADS box domain binding","termid":"GO:0097162"}


id: GO:0051733
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: NTP + 5'-dephospho-DNA = NDP + 5'-phospho-DNA.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete polydeoxyribonucleotide kinase activity (obsolete GO:0051733)","synonyms":[{"name":"DNA 5'-hydroxyl kinase activity","type":"exact"},{"name":"DNA kinase activity","type":"exact"}],"termid":"GO:0051733"}


id: PBO:0062749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily K member 1","termid":"PBO:0062749"}


id: PBO:0082458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics and lifespan extension; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that block potential dimerization","termid":"PBO:0082458"}


id: PBO:0066180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 5","termid":"PBO:0066180"}


id: PBO:0091273
data:
  {"annotation_feature_type":"gene","cv_name":"genome_org","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"low complexity gene-free region","termid":"PBO:0091273"}


id: PBO:0081797
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 726 pseudogene 1","termid":"PBO:0081797"}


id: PBO:0084951
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Multi-spanning vacuolar membrane protease; glycosylated transmembrane protein bearing homology to the M28 family of metalloproteases; has a lumenal-facing protease domain; proposed role in vacuole physiology","termid":"PBO:0084951"}


id: GO:0004604
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  {"annotated_genes":["SJAG_04060"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84844],"is_not":false,"summary":null,"term":"GO:0004604"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: adenosine 3',5'-diphosphate + H+ + sulfite + thioredoxin disulfide = 3'-phospho-5'-adenylyl sulfate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin; 3'-phosphoadenosine 5'-phosphosulfate is also known as PAPS.","definition_xrefs":["EC:1.8.4.8","RHEA:11724"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor","termid":"GO:0016671"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04060":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"phosphoadenylyl-sulfate reductase (thioredoxin) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:1.8.4.8-RXN","KEGG_REACTION:R02021"],"synonyms":[{"name":"3'-phosphoadenylylsulfate reductase activity","type":"related"},{"name":"PAPS reductase activity","type":"related"},{"name":"PAPS reductase, thioredoxin-dependent activity","type":"related"},{"name":"PAPS sulfotransferase activity","type":"related"},{"name":"PAdoPS reductase activity","type":"related"},{"name":"adenosine 3',5'-bisphosphate,sulfite:oxidized-thioredoxin oxidoreductase (3'-phosphoadenosine-5'-phosphosulfate-forming)","type":"related"},{"name":"adenosine 3',5'-bisphosphate,sulfite:thioredoxin-disulfide oxidoreductase (3'-phosphoadenosine-5'-phosphosulfate-forming)","type":"related"},{"name":"phosphoadenosine-phosphosulfate reductase activity","type":"related"},{"name":"phosphoadenylyl-sulphate reductase (thioredoxin) activity","type":"exact"},{"name":"thioredoxin:3'-phospho-adenylylsulfate reductase activity","type":"related"},{"name":"thioredoxin:adenosine 3'-phosphate 5'-phosphosulfate reductase activity","type":"related"}],"termid":"GO:0004604","terms_by_termid":{"GO:0004604":null}}


id: PBO:0058805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7847","termid":"PBO:0058805"}


id: PBO:0067510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 650, pseudogene","termid":"PBO:0067510"}


id: GO:0009137
data:
  {"annotated_genes":["SJAG_00461","SJAG_03373","SJAG_04192","SJAG_06621","SJAG_04495","SJAG_02107","SJAG_03660","SJAG_04334","SJAG_01310","SJAG_00633","SJAG_03903","SJAG_02135","SJAG_05314","SJAG_00605","SJAG_02796","SJAG_00685","SJAG_00839","SJAG_02945","SJAG_04048","SJAG_02369","SJAG_06622","SJAG_02009","SJAG_03852","SJAG_00027","SJAG_03828"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105391,105392,112364,101454,94303,101455,101453,104926,105387,105389,101820,94033,99399,104925,104928,105390,105393,104924,90575,104923,99655,100471,91060,101819,104927,104929,105388],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"},{"annotations":[100473],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006096"},{"annotations":[84680],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061613"},{"annotations":[94221,107581],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061688"},{"annotations":[72107,74925],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0045820"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of purine nucleoside diphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside diphosphate catabolic process","termid":"GO:0009134"},{"relation_name":"is_a","term_name":"purine nucleoside diphosphate metabolic process","termid":"GO:0009135"}],"gene_count":25,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00461":null,"SJAG_00605":null,"SJAG_00633":null,"SJAG_00685":null,"SJAG_00839":null,"SJAG_01310":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02369":null,"SJAG_02796":null,"SJAG_02945":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03828":null,"SJAG_03852":null,"SJAG_03903":null,"SJAG_04048":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_05314":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"purine nucleoside diphosphate catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"purine nucleoside diphosphate breakdown","type":"exact"},{"name":"purine nucleoside diphosphate catabolism","type":"exact"},{"name":"purine nucleoside diphosphate degradation","type":"exact"}],"termid":"GO:0009137","terms_by_termid":{"GO:0006096":null,"GO:0045820":null,"GO:0061613":null,"GO:0061621":null,"GO:0061688":null}}


id: GO:0031803
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 6 metabotropic glutamate receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled glutamate receptor binding","termid":"GO:0035256"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"type 6 metabotropic glutamate receptor binding","synonyms":[{"name":"type 6 metabotropic glutamate receptor ligand","type":"narrow"}],"termid":"GO:0031803"}


id: PBO:0043018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHL1 antisense RNA 2","termid":"PBO:0043018"}


id: GO:0006658
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  {"annotated_genes":["SJAG_03076","SJAG_01233","SJAG_02100"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97433,110685],"is_not":false,"summary":null,"term":"GO:0006658"},{"annotations":[110684],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006659"},{"annotations":[89970],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006660"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving phosphatidylserines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of L-serine. They are important constituents of cell membranes.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular modified amino acid metabolic process","termid":"GO:0006575"},{"relation_name":"is_a","term_name":"glycerophospholipid metabolic process","termid":"GO:0006650"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01233":null,"SJAG_02100":null,"SJAG_03076":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"phosphatidylserine metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"phosphatidylserine metabolism","type":"exact"}],"termid":"GO:0006658","terms_by_termid":{"GO:0006658":null,"GO:0006659":null,"GO:0006660":null}}


id: PBO:0017518
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Twin Horse Tails","termid":"PBO:0017518"}


id: PBO:0085595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in bud-site selection; diploid mutants display a unipolar budding pattern instead of the wild-type bipolar pattern, and bud at the proximal pole; BUD8 has a paralog, BUD9, that arose from the whole genome duplication","termid":"PBO:0085595"}


id: PBO:0047698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FLYWCH-type zinc finger 1 pseudogene 1","termid":"PBO:0047698"}


id: FYPO:0005258
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which the growth of a population of cells is increased relative to normal in the vegetative growth phase of the life cycle at high temperatures.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased vegetative cell population growth","termid":"FYPO:0004557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002058","FYPO:0001985","FYPO:0002057","FYPO:0000139","FYPO:0005447"],"is_obsolete":false,"name":"increased cell population growth at high temperature","synonyms":[{"name":"heat resistance","type":"related"},{"name":"increased cell population growth at high temperature during mitotic cell cycle","type":"related"},{"name":"increased growth at high temperature","type":"broad"},{"name":"increased vegetative cell population growth at high temperature","type":"exact"},{"name":"resistance to heat","type":"related"},{"name":"resistance to high temperature","type":"related"},{"name":"resistance to high temperature during vegetative growth","type":"related"},{"name":"resistant to heat","type":"related"}],"termid":"FYPO:0005258"}


id: PBO:0084734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial integral inner membrane protein; involved in membrane insertion of C-terminus of Cox2p, interacts genetically and physically with Cox18p; deletion mutant sensitive to the anti-Pneumocystis carinii drug pentamidine","termid":"PBO:0084734"}


id: GO:0060084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of communication from a neuron to a smooth muscle in the bladder that contributes to the expulsion of urine from the body.","definition_xrefs":["GOC:dph","PMID:15827347"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuromuscular synaptic transmission","termid":"GO:0007274"},{"relation_name":"part_of","term_name":"micturition","termid":"GO:0060073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"synaptic transmission involved in micturition","synonyms":[{"name":"synaptic transmission involved in urination","type":"related"}],"termid":"GO:0060084"}


id: PBO:0036152
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_iMTOC","termid":"PBO:0036152"}


id: PBO:0060989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-homologous end joining factor 1","termid":"PBO:0060989"}


id: PBO:0073967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 22 member 16","termid":"PBO:0073967"}


id: PBO:0028466
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_cell_tip_during_mitotic_interphase","termid":"PBO:0028466"}


id: PBO:0046692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ethanolamine kinase 1","termid":"PBO:0046692"}


id: GO:0051517
data:
  {"annotated_genes":["SJAG_02169"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86782],"is_not":false,"summary":null,"term":"GO:0051517"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of bipolar cell growth, polarized growth from both ends of a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of unidimensional cell growth","termid":"GO:0051511"},{"relation_name":"is_a","term_name":"regulation of bipolar cell growth","termid":"GO:0051516"},{"relation_name":"negatively_regulates","term_name":"bipolar cell growth","termid":"GO:0042815"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02169":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of bipolar cell growth","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of bipolar cell growth","type":"exact"},{"name":"down-regulation of bipolar cell growth","type":"exact"},{"name":"downregulation of bipolar cell growth","type":"exact"},{"name":"inhibition of bipolar cell growth","type":"narrow"}],"termid":"GO:0051517","terms_by_termid":{"GO:0051517":null}}


id: FYPO:0001305
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of any long-chain fatty acid-CoA ligase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"},{"relation_name":"is_a","term_name":"abnormal metabolic process","termid":"FYPO:0000860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000002","FYPO:0000652","FYPO:0000654","FYPO:0000661","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal long-chain fatty acid-CoA ligase activity","synonyms":[{"name":"abnormal lcfa-ligase activity","type":"exact"}],"termid":"FYPO:0001305"}


id: PBO:0089403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTB/POZ family substrate adaptor for cullin 3 ubiquitin ligase Btb3","termid":"PBO:0089403"}


id: GO:0019178
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + NADP+ = NAD+ + phosphate.","definition_xrefs":["RHEA:28050"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016788","GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"NADP phosphatase activity","secondary_identifiers":["EC:3.1.3.108","MetaCyc:RXN-5822"],"termid":"GO:0019178"}


id: GO:0010225
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-C radiation stimulus. UV-C radiation (UV-C light) spans the wavelengths 100 to 280 nm.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to UV","termid":"GO:0009411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to UV-C","synonyms":[{"name":"response to UV-C light stimulus","type":"exact"},{"name":"response to UV-C radiation stimulus","type":"exact"},{"name":"response to UVC light stimulus","type":"exact"},{"name":"response to UVC radiation stimulus","type":"exact"},{"name":"response to germicidal ultraviolet light stimulus","type":"exact"},{"name":"response to germicidal ultraviolet radiation stimulus","type":"exact"},{"name":"response to shortwave ultraviolet light stimulus","type":"exact"},{"name":"response to shortwave ultraviolet radiation stimulus","type":"exact"}],"termid":"GO:0010225"}


id: PBO:0069447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 712, pseudogene","termid":"PBO:0069447"}


id: PBO:0089786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin, WD repeat Nup155","termid":"PBO:0089786"}


id: PBO:0031308
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_telomere_maintenance","termid":"PBO:0031308"}


id: FYPO:0007570
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which septation initiation network signaling takes place at both mitotic spindle pole bodies. Normally, SIN signaling occurs only at the new SPB.","definition_xrefs":["PMID:15132994","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal septation initiation network signaling","termid":"FYPO:0007569"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000298","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"septation initiation network signaling from both mitotic spindle pole bodies","synonyms":[{"name":"SIN signaling from both mitotic SPBs","type":"exact"},{"name":"SIN signaling from both mitotic spindle pole bodies","type":"exact"},{"name":"abnormal septation initiation network signaling from both mitotic spindle pole bodies","type":"exact"},{"name":"septation initiation network signaling from both mitotic SPBs","type":"exact"},{"name":"septation initiation network signaling from both mitotic spindle pole bodies during mitotic cell cycle","type":"related"},{"name":"septation initiation network signaling from both mitotic spindle pole bodies during vegetative growth","type":"exact"},{"name":"septation initiation network signaling from old and new mitotic SPBs","type":"exact"},{"name":"septation initiation network signaling from old and new mitotic spindle pole bodies","type":"exact"},{"name":"septation initiation network signalling from both mitotic spindle pole bodies","type":"exact"},{"name":"septation initiation signaling from both mitotic spindle pole bodies","type":"exact"}],"termid":"FYPO:0007570"}


id: PBO:0041055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bromodomain containing 7 pseudogene 6","termid":"PBO:0041055"}


id: GO:0032701
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-18 production.","definition_xrefs":["PMID:23710316","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of interleukin-18 production","termid":"GO:0032661"},{"relation_name":"negatively_regulates","term_name":"interleukin-18 production","termid":"GO:0032621"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of interleukin-18 production","secondary_identifiers":["GO:0045382","GO:0150121"],"synonyms":[{"name":"down regulation of interleukin-18 production","type":"exact"},{"name":"down-regulation of interleukin-18 production","type":"exact"},{"name":"downregulation of interleukin-18 production","type":"exact"},{"name":"inhibition of interleukin-18 production","type":"narrow"},{"name":"negative regulation of IL-18 production","type":"exact"},{"name":"negative regulation of interleukin-18 biosynthetic process","type":"narrow"},{"name":"negative regulation of interleukin-18 secretion","type":"narrow"}],"termid":"GO:0032701"}


id: GO:0003762
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Assists in chromatin assembly by chaperoning histones on to replicating DNA, but is not a component of the assembled nucleosome when performing its normal biological function.","definition_xrefs":["PMID:9325046","GOC:jl","PMID:7600578"],"gene_count":0,"genotype_count":0,"name":"obsolete histone-specific chaperone activity (obsolete GO:0003762)","synonyms":[{"name":"histone-specific chaperone activity","type":"exact"},{"name":"nucleosome assembly chaperone","type":"exact"}],"termid":"GO:0003762"}


id: PBO:0030235
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_immediate_intracellular_calcium_spike_following_extracellular_calcium_stimulus","termid":"PBO:0030235"}


id: GO:0031396
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the addition of ubiquitin groups to a protein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein modification by small protein conjugation or removal","termid":"GO:1903320"},{"relation_name":"regulates","term_name":"protein ubiquitination","termid":"GO:0016567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0008150","GO:0070647"],"is_obsolete":false,"name":"regulation of protein ubiquitination","termid":"GO:0031396"}


id: GO:0062149
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events involved in the perception of pain in which a stimulus is received and converted into a molecular signal.","definition_xrefs":["PMID:19837031"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of stimulus involved in sensory perception","termid":"GO:0050906"},{"relation_name":"part_of","term_name":"sensory perception of pain","termid":"GO:0019233"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of stimulus involved in sensory perception of pain","termid":"GO:0062149"}


id: PR:Q10306
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A citrate synthase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00965","PANTHER:PTHR11739:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"citrate synthase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6C3.04","secondary_identifiers":["UniProtKB:Q10306"],"synonyms":[{"name":"Spom972h-CS","type":"exact"}],"termid":"PR:Q10306"}


id: GO:0045262
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The catalytic sector of the plasma membrane hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the plasma membrane when the entire ATP synthase is assembled. Examples of this component are found in Bacterial species.","definition_xrefs":["GOC:mah","PMID:10838056","GOC:mtg_sensu"],"gene_count":0,"genotype_count":0,"name":"obsolete plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) (obsolete GO:0045262)","synonyms":[{"name":"hydrogen-transporting ATP synthase, F1 sector","type":"broad"},{"name":"proton-transporting ATP synthase complex, catalytic core F(1)","type":"broad"}],"termid":"GO:0045262"}


id: PBO:0069723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1004, pseudogene","termid":"PBO:0069723"}


id: SO:0000060
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"One arm of a compound chromosome.","direct_ancestors":[{"relation_name":"is_a","term_name":"compound_chromosome","termid":"SO:1000042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"compound_chromosome_arm","synonyms":[{"name":"compound chromosome arm","type":"exact"}],"termid":"SO:0000060"}


id: GO:0050518
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-C-methyl-D-erythritol 4-phosphate + CTP = 4-CDP-2-C-methyl-D-erythritol + diphosphate.","definition_xrefs":["RHEA:13429","EC:2.7.7.60"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytidylyltransferase activity","termid":"GO:0070567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016779","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity","secondary_identifiers":["GO:0008699","KEGG_REACTION:R05633","MetaCyc:2.7.7.60-RXN"],"synonyms":[{"name":"4-diphosphocytidyl-2-C-methyl-D-erythritol synthase activity","type":"related"},{"name":"4-diphosphocytidyl-2C-methyl-D-erythritol synthase activity","type":"exact"},{"name":"CTP:2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity","type":"exact"},{"name":"MCT activity","type":"related"},{"name":"MEP cytidylyltransferase activity","type":"exact"}],"termid":"GO:0050518"}


id: FYPO:0007166
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the cell cortex does not occur during prophase of the first meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to cell cortex during meiotic cell cycle","termid":"FYPO:0007165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to cell cortex during meiotic prophase I","synonyms":[{"name":"abolished protein localization to cell cortex during prophase I","type":"exact"},{"name":"protein absent from cell cortex during meiotic prophase I","type":"related"},{"name":"protein localization to cell cortex abolished during meiotic prophase I","type":"exact"}],"termid":"FYPO:0007166"}


id: PBO:0089739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAS complex subunit Vac7","termid":"PBO:0089739"}


id: PBO:0028561
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_phleomycin","termid":"PBO:0028561"}


id: GO:0018102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The hydroxylation of peptidyl-arginine to form peptidyl-4-hydroxy-L-arginine.","definition_xrefs":["RESID:AA0215"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein hydroxylation","termid":"GO:0018126"},{"relation_name":"is_a","term_name":"peptidyl-arginine hydroxylation","termid":"GO:0030961"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-arginine hydroxylation to peptidyl-4-hydroxy-L-arginine","termid":"GO:0018102"}


id: PBO:0052504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 17","termid":"PBO:0052504"}


id: GO:0015013
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The polymerization of one or more heparan sulfate chains via a xylose link onto serine residues in the core protein of a proteoglycan.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein O-linked glycosylation via serine","termid":"GO:0018242"},{"relation_name":"is_a","term_name":"heparan sulfate proteoglycan metabolic process","termid":"GO:0030201"},{"relation_name":"part_of","term_name":"heparan sulfate proteoglycan biosynthetic process","termid":"GO:0015012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0006486"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006486","GO:0008150","GO:0006790"],"is_obsolete":false,"name":"heparan sulfate proteoglycan biosynthetic process, linkage to polypeptide","synonyms":[{"name":"heparan sulfate proteoglycan anabolism, linkage to polypeptide","type":"exact"},{"name":"heparan sulfate proteoglycan formation, linkage to polypeptide","type":"exact"},{"name":"heparan sulfate proteoglycan synthesis, linkage to polypeptide","type":"exact"},{"name":"heparan sulphate proteoglycan biosynthesis, linkage to polypeptide","type":"exact"},{"name":"heparan sulphate proteoglycan biosynthetic process, linkage to polypeptide","type":"exact"},{"name":"heparin proteoglycan biosynthetic process, linkage to polypeptide","type":"related"}],"termid":"GO:0015013"}


id: PBO:0055339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2767","termid":"PBO:0055339"}


id: PBO:0036354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy associated WD repeat protein Atg18c","termid":"PBO:0036354"}


id: GO:0102915
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + (+)-pinoresinol + NADPH + O2 = (+)-piperitol + NADP + 2 H2O.","definition_xrefs":["PMID:16785429","EC:1.14.19.74"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"piperitol synthase activity","termid":"GO:0102915"}


id: PBO:0057309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 516b-2","termid":"PBO:0057309"}


id: GO:0050476
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + acetylenedicarboxylate = CO2 + pyruvate.","definition_xrefs":["EC:4.1.1.78"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"acetylenedicarboxylate decarboxylase activity","secondary_identifiers":["MetaCyc:4.1.1.78-RXN","RHEA:17733"],"synonyms":[{"name":"acetylenedicarboxylate carboxy-lyase (pyruvate-forming)","type":"related"},{"name":"acetylenedicarboxylate carboxy-lyase activity","type":"related"},{"name":"acetylenedicarboxylate hydrase activity","type":"related"},{"name":"acetylenedicarboxylate hydratase activity","type":"related"}],"termid":"GO:0050476"}


id: GO:0008252
data:
  {"annotated_genes":["SJAG_02959","SJAG_02593","SJAG_02582","SJAG_01055","SJAG_03096","SJAG_02580","SJAG_01702"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[111541],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008441"},{"annotations":[90408,109716,83663,86601,83664,109717],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008253"},{"annotations":[113186],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0050484"},{"annotations":[104504],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0050483"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a nucleotide + H2O = a nucleoside + phosphate.","definition_xrefs":["RHEA:22140"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01055":null,"SJAG_01702":null,"SJAG_02580":null,"SJAG_02582":null,"SJAG_02593":null,"SJAG_02959":null,"SJAG_03096":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0016788","GO:0003824"],"is_obsolete":false,"name":"nucleotidase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"NSP I","type":"related"},{"name":"NSP II","type":"related"},{"name":"acid nucleotidase activity","type":"related"},{"name":"deoxyinosine-activated nucleotidase (DIAN)","type":"related"},{"name":"deoxyribonucleoside-activated nucleotidase (DAN)","type":"related"},{"name":"nucleotide phosphohydrolase activity","type":"related"},{"name":"nucleotide-specific phosphatase activity","type":"related"}],"termid":"GO:0008252","terms_by_termid":{"GO:0008253":null,"GO:0008441":null,"GO:0050483":null,"GO:0050484":null}}


id: GO:0030726
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of the intercellular bridges that connect the germ-line cells of a male cyst.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"germline ring canal formation","termid":"GO:0030725"},{"relation_name":"part_of","term_name":"spermatogenesis","termid":"GO:0007283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"male germline ring canal formation","synonyms":[{"name":"spermatocyte ring canal formation","type":"narrow"},{"name":"testicular ring canal formation","type":"narrow"}],"termid":"GO:0030726"}


id: PBO:0036252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-glutamyl phosphate reductase Pro1","termid":"PBO:0036252"}


id: PBO:0061966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily AF member 1 pseudogene","termid":"PBO:0061966"}


id: GO:0019209
data:
  {"annotated_genes":["SJAG_04614","SJAG_00439","SJAG_04020","SJAG_04200","SJAG_00457","SJAG_02605","SJAG_03699","SJAG_03936","SJAG_03090","SJAG_04140","SJAG_01411","SJAG_00333","SJAG_01000","SJAG_00296","SJAG_03618","SJAG_03340","SJAG_03695","SJAG_02057","SJAG_04502","SJAG_02232","SJAG_02332","SJAG_01605","SJAG_01213","SJAG_02785","SJAG_00424","SJAG_00236","SJAG_05017","SJAG_03453","SJAG_00318","SJAG_02026","SJAG_04509","SJAG_03371","SJAG_01401","SJAG_04666","SJAG_00142"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87266],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098744"},{"annotations":[88184],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019912"},{"annotations":[101009,108977,113083,104874,107208,106918,97645,108089],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061575"},{"annotations":[95110,103143,85283,105835,87356,113283,114896,107440,106527,95109,114778,114895,83915,95217,105834,108486,112334],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030295"},{"annotations":[85508,106548,83983,87187,101119,96008,108978,114362,87235,87236,85298,113284,86912,105266,88474],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043539"}]},"cv_name":"molecular_function","definition":"Binds to and increases the activity of a kinase, an enzyme which catalyzes of the transfer of a phosphate group, usually from ATP, to a substrate molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"},{"relation_name":"is_a","term_name":"kinase regulator activity","termid":"GO:0019207"}],"gene_count":35,"genes_by_uniquename":{"SJAG_00142":null,"SJAG_00236":null,"SJAG_00296":null,"SJAG_00318":null,"SJAG_00333":null,"SJAG_00424":null,"SJAG_00439":null,"SJAG_00457":null,"SJAG_01000":null,"SJAG_01213":null,"SJAG_01401":null,"SJAG_01411":null,"SJAG_01605":null,"SJAG_02026":null,"SJAG_02057":null,"SJAG_02232":null,"SJAG_02332":null,"SJAG_02605":null,"SJAG_02785":null,"SJAG_03090":null,"SJAG_03340":null,"SJAG_03371":null,"SJAG_03453":null,"SJAG_03618":null,"SJAG_03695":null,"SJAG_03699":null,"SJAG_03936":null,"SJAG_04020":null,"SJAG_04140":null,"SJAG_04200":null,"SJAG_04502":null,"SJAG_04509":null,"SJAG_04614":null,"SJAG_04666":null,"SJAG_05017":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0098772","GO:0030234","GO:0003674","GO:0140677"],"is_obsolete":false,"name":"kinase activator activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0019209","terms_by_termid":{"GO:0019912":null,"GO:0030295":null,"GO:0043539":null,"GO:0061575":null,"GO:0098744":null}}


id: PBO:0051989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"JAKMIP1 divergent transcript","termid":"PBO:0051989"}


id: PBO:0108581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo repeat protein, human ATXN10 ortholog","termid":"PBO:0108581"}


id: PBO:0054291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1682","termid":"PBO:0054291"}


id: PBO:0001571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol-3-phosphatase, myotubularin family (predicted)","termid":"PBO:0001571"}


id: GO:0042720
data:
  {"annotated_genes":["SJAG_03648","SJAG_02809"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[104074,105188],"is_not":false,"summary":null,"term":"GO:0042720"}]},"cv_name":"cellular_component","definition":"Protease complex of the mitochondrial inner membrane, consisting of at least two subunits, involved in processing of both nuclear- and mitochondrially-encoded proteins targeted to the intermembrane space.","definition_xrefs":["PMID:12191769","PMID:10821182"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inner mitochondrial membrane protein complex","termid":"GO:0098800"},{"relation_name":"is_a","term_name":"serine-type endopeptidase complex","termid":"GO:1905370"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02809":null,"SJAG_03648":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005739"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0005739","GO:0032991"],"is_obsolete":false,"name":"mitochondrial inner membrane peptidase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"IMP","type":"narrow"},{"name":"mitochondrion inner membrane peptidase complex","type":"exact"}],"termid":"GO:0042720","terms_by_termid":{"GO:0042720":null}}


id: GO:0060635
data:
  {"annotated_genes":["SJAG_04771","SJAG_04666"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88459],"is_not":false,"summary":null,"term":"GO:0060635"},{"annotations":[88463,83595],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140748"}]},"cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of macromolecule biosynthetic process","termid":"GO:0010557"},{"relation_name":"is_a","term_name":"regulation of (1->3)-beta-D-glucan biosynthetic process","termid":"GO:0032953"},{"relation_name":"is_a","term_name":"positive regulation of carbohydrate metabolic process","termid":"GO:0045913"},{"relation_name":"positively_regulates","term_name":"(1->3)-beta-D-glucan biosynthetic process","termid":"GO:0006075"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04666":null,"SJAG_04771":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"positive regulation of (1->3)-beta-D-glucan biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of 1,3-beta-D-glucan biosynthetic process","type":"exact"}],"termid":"GO:0060635","terms_by_termid":{"GO:0060635":null,"GO:0140748":null}}


id: PBO:0068750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U5E small nuclear 5, pseudogene","termid":"PBO:0068750"}


id: PBO:0070316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY3 pseudogene 5","termid":"PBO:0070316"}


id: PBO:0051669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inverted formin 2","termid":"PBO:0051669"}


id: PBO:0050841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IBA57 divergent transcript","termid":"PBO:0050841"}


id: GO:0047755
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-threo-isocitrate = D-erythro-isocitrate.","definition_xrefs":["EC:5.1.2.6","RHEA:10820"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on hydroxy acids and derivatives","termid":"GO:0016856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"isocitrate epimerase activity","secondary_identifiers":["KEGG_REACTION:R02318","MetaCyc:ISOCITRATE-EPIMERASE-RXN"],"synonyms":[{"name":"(1R,2S)-1-hydroxypropane-1,2,3-tricarboxylate 1-epimerase activity","type":"related"}],"termid":"GO:0047755"}


id: PBO:0002819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-phosphatidylinositol 4-kinase Pik1","termid":"PBO:0002819"}


id: PBO:0077292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 35A","termid":"PBO:0077292"}


id: PBO:0012314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NGG1 interacting factor 3 family, implicated in transcription","termid":"PBO:0012314"}


id: PBO:0086594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; expression induced by heat and by calcium shortage; in many strains, YML002W is continuous with YML003W, and is predicted to encode a single protein of 1090 aa with a full-length VPS9 domain; in strains S288C, W303, and CEN.PK, a single thymine residue is deleted near the 3' end of YML003W at ChrXIII:264337, causing a frameshift and premature stop codon, truncating YML003W","termid":"PBO:0086594"}


id: PBO:0087132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding protein involved in asymmetric localization of ASH1 mRNA; represses translation of ASH1 mRNA, an effect reversed by Yck1p-dependent phosphoryation; regulates telomere position effect and length; similarity to hnRNP-K","termid":"PBO:0087132"}


id: GO:1901326
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tetracycline stimulus.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to alcohol","termid":"GO:0097305"},{"relation_name":"is_a","term_name":"response to ketone","termid":"GO:1901654"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to tetracycline","termid":"GO:1901326"}


id: GO:0044646
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant modulation of complement activation in the bitten/stung organism.","definition_xrefs":["PMID:20837040","GOC:jl","GOC:fj"],"gene_count":0,"genotype_count":0,"name":"obsolete envenomation resulting in modulation of complement activation in another organism (obsolete GO:0044646)","synonyms":[{"name":"envenomation resulting in modulation of complement activation in other organism","type":"exact"},{"name":"envenomation resulting in regulation of complement activation in other organism","type":"exact"}],"termid":"GO:0044646"}


id: GO:2000561
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of CD4-positive, alpha-beta T cell proliferation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of alpha-beta T cell proliferation","termid":"GO:0046640"},{"relation_name":"is_a","term_name":"regulation of CD4-positive, alpha-beta T cell activation","termid":"GO:2000514"},{"relation_name":"regulates","term_name":"CD4-positive, alpha-beta T cell proliferation","termid":"GO:0035739"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of CD4-positive, alpha-beta T cell proliferation","termid":"GO:2000561"}


id: SO:0000627
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A regulatory region that 1) when located between a CRM and a gene's promoter prevents the CRM from modulating that genes expression and 2) acts as a chromatin boundary element or barrier that can block the encroachment of condensed chromatin from an adjacent region.","definition_xrefs":["NCBI:cf","PMID:12154228","SO:regcreative"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cis_regulatory_module","termid":"SO:0000727"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insulator","secondary_identifiers":["http://en.wikipedia.org/wiki/Insulator_(genetics)"],"synonyms":[{"name":"INSDC_feature:regulatory","type":"broad"},{"name":"INSDC_qualifier:insulator","type":"exact"},{"name":"insulator element","type":"exact"}],"termid":"SO:0000627"}


id: FYPO:0001380
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the size, shape, or structure of the nucleus is normal (i.e. indistinguishable from wild type) in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"},{"relation_name":"is_a","term_name":"normal nuclear morphology","termid":"FYPO:0001673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal nuclear morphology during vegetative growth","synonyms":[{"name":"normal nuclear morphology during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001380"}


id: PBO:0063017
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAGE family member 5","termid":"PBO:0063017"}


id: _global:complete_evidence_for_feature
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"B is complete_evidence_for_feature A if the extent (5' and 3' boundaries) and internal boundaries of B fully support the extent and internal boundaries of A.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"evidence_for_feature","termid":"_global:evidence_for_feature"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complete_evidence_for_feature","termid":"_global:complete_evidence_for_feature"}


id: GO:1904711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of Wnt-Frizzled-LRP5/6 complex assembly.","definition_xrefs":["GOC:PARL","GOC:bf","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein-containing complex assembly","termid":"GO:0043254"},{"relation_name":"regulates","term_name":"Wnt-Frizzled-LRP5/6 complex assembly","termid":"GO:1904701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0044085","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"regulation of Wnt-Frizzled-LRP5/6 complex assembly","synonyms":[{"name":"regulation of Frizzled-LRP5/6 complex assembly","type":"related"},{"name":"regulation of Frizzled-LRP5/6 complex formation","type":"related"},{"name":"regulation of WNT-FZD-LRP5 complex assembly","type":"narrow"},{"name":"regulation of WNT-FZD-LRP5 complex formation","type":"narrow"},{"name":"regulation of WNT-FZD-LRP6 complex assembly","type":"narrow"},{"name":"regulation of WNT-FZD-LRP6 complex formation","type":"narrow"},{"name":"regulation of Wnt receptor complex assembly","type":"broad"},{"name":"regulation of Wnt-FZD-LRP5/6 trimeric complex assembly","type":"exact"},{"name":"regulation of Wnt-FZD-LRP5/6 trimeric complex formation","type":"exact"},{"name":"regulation of Wnt-induced Frizzled-LRP5/6 complex assembly","type":"related"},{"name":"regulation of Wnt-induced Frizzled-LRP5/6 complex formation","type":"related"}],"termid":"GO:1904711"}


id: FYPO:0004724
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form nuclear microtubules during interphase of the mitotic cell cycle that are longer than normal, and are partially or completely surrounded by an extension of the nuclear envelope. These microtubules usually have one end in close proximity to a spindle pole body, and may puncture the nuclear envelope to extent into the cytoplasm.","definition_xrefs":["PomBase:mah","PMID:15772152"],"direct_ancestors":[{"relation_name":"has_part","term_name":"nuclear envelope protrusion present during mitotic interphase","termid":"FYPO:0004725"},{"relation_name":"is_a","term_name":"long microtubules","termid":"FYPO:0000055"},{"relation_name":"is_a","term_name":"nuclear envelope protrusion present during mitotic interphase","termid":"FYPO:0004725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0002403"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0002399","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0000054","FYPO:0002403","FYPO:0001985"],"is_obsolete":false,"name":"long nuclear microtubules protruding through nuclear envelope during interphase","synonyms":[{"name":"long nuclear microtubules during interphase, with nuclear envelope deformation","type":"related"},{"name":"long nuclear microtubules during interphase, with nuclear envelope protrusion","type":"exact"},{"name":"long nuclear microtubules protruding through nuclear envelope at interphase","type":"exact"},{"name":"long nuclear microtubules protruding through nuclear envelope during interphase during mitotic cell cycle","type":"related"},{"name":"long nuclear microtubules protruding through nuclear envelope during interphase during vegetative growth","type":"exact"},{"name":"long nuclear microtubules protruding through nuclear envelope during mitotic interphase","type":"exact"},{"name":"nuclear envelope protrusion with long mitotic spindle microtubules protruding beyond SPB during interphase","type":"exact"},{"name":"nuclear envelope protrusion with long mitotic spindle microtubules protruding beyond spindle pole body during interphase","type":"exact"}],"termid":"FYPO:0004724"}


id: PBO:0052934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 21-2","termid":"PBO:0052934"}


id: GO:1900531
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any regulation of cell shape that is involved in cellular response to heat.","definition_xrefs":["GOC:al","PMID:9135147","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cell shape involved in cellular response to heat (obsolete GO:1900531)","synonyms":[{"name":"regulation of cell shape involved in cellular response to heat","type":"exact"},{"name":"regulation of cell shape of cellular response to heat","type":"exact"},{"name":"regulation of cell shape of cellular response to heat stress","type":"exact"}],"termid":"GO:1900531"}


id: GO:0050833
data:
  {"annotated_genes":["SJAG_01924","SJAG_04593"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90445,110165],"is_not":false,"summary":null,"term":"GO:0050833"}]},"cv_name":"molecular_function","definition":"Enables the transfer of pyruvate, 2-oxopropanoate, from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transmembrane transporter activity","termid":"GO:0008028"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01924":null,"SJAG_04593":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"pyruvate transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-372342"],"synonyms":[{"name":"monocarboxylate (lactate, pyruvate, mevalonate) uptake/efflux porter activity","type":"related"}],"termid":"GO:0050833","terms_by_termid":{"GO:0050833":null}}


id: PBO:0077390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 130","termid":"PBO:0077390"}


id: SO:0000298
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A feature where there has been exchange of genetic material in the event of mitosis or meiosis","direct_ancestors":[{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recombination_feature","synonyms":[{"name":"INSDC_feature:misc_recomb","type":"broad"},{"name":"INSDC_qualifier:other","type":"exact"},{"name":"recombination feature","type":"exact"}],"termid":"SO:0000298"}


id: PBO:0018169
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"latrunculin sensitive gamma subunit","termid":"PBO:0018169"}


id: GO:0072550
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: triferuloyl spermidine + NADPH + O2 = diferuloyl mono-(hydroxyferuloyl) spermidine + NADP+ + H2O.","definition_xrefs":["GOC:kad","PMID:19779199"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tri-(feruloyl or hydroxyferuloyl) spermidine meta-hydroxylase activity","termid":"GO:0072532"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"triferuloylspermidine meta-hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-11262"],"synonyms":[{"name":"triferuloyl spermidine meta-hydroxylase activity","type":"exact"}],"termid":"GO:0072550"}


id: PBO:0071625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a pseudogene 44","termid":"PBO:0071625"}


id: PBO:0067170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 223, pseudogene","termid":"PBO:0067170"}


id: GO:1900931
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of L-tyrosine import into the cell.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organic acid transport","termid":"GO:0032892"},{"relation_name":"is_a","term_name":"positive regulation of transmembrane transport","termid":"GO:0034764"},{"relation_name":"is_a","term_name":"positive regulation of amino acid transport","termid":"GO:0051957"},{"relation_name":"is_a","term_name":"regulation of L-tyrosine import across plasma membrane","termid":"GO:1900929"},{"relation_name":"positively_regulates","term_name":"L-tyrosine import across plasma membrane","termid":"GO:1903808"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of L-tyrosine import across plasma membrane","synonyms":[{"name":"activation of L-tyrosine import","type":"narrow"},{"name":"activation of L-tyrosine uptake","type":"narrow"},{"name":"positive regulation of L-tyrosine import","type":"broad"},{"name":"positive regulation of L-tyrosine uptake","type":"related"},{"name":"up regulation of L-tyrosine import","type":"exact"},{"name":"up regulation of L-tyrosine uptake","type":"related"},{"name":"up-regulation of L-tyrosine import","type":"exact"},{"name":"up-regulation of L-tyrosine uptake","type":"related"},{"name":"upregulation of L-tyrosine import","type":"exact"},{"name":"upregulation of L-tyrosine uptake","type":"related"}],"termid":"GO:1900931"}


id: PBO:0034570
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_chromosome_morphology_during_meiotic_cell_cycle","termid":"PBO:0034570"}


id: PBO:0080944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger B-box domain containing","termid":"PBO:0080944"}


id: PBO:0031263
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_DNA_recombination_at_mitotic_DNA_replication_fork_barriers","termid":"PBO:0031263"}


id: PBO:0003835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylserine decarboxylase Psd1","termid":"PBO:0003835"}


id: PBO:0047182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 200 member C","termid":"PBO:0047182"}


id: PBO:0054127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1493","termid":"PBO:0054127"}


id: FYPO:0005624
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to ultraviolet light during S phase of the mitotic cell cycle.","definition_xrefs":["PMID:26652183","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitive to UV during vegetative growth","termid":"FYPO:0000268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to UV during mitotic S phase","synonyms":[{"name":"decreased growth during cellular response to UV during mitotic S phase","type":"exact"},{"name":"decreased vegetative cell population growth during cellular response to UV during mitotic S phase","type":"exact"},{"name":"hypersensitive to UV during mitotic S phase","type":"exact"},{"name":"increased sensitivity to UV irradiation during mitotic S phase","type":"exact"},{"name":"sensitive to UV during S phase during vegetative growth","type":"exact"},{"name":"sensitive to UV during S phase of mitotic cell cycle","type":"exact"},{"name":"sensitive to ultraviolet light during mitotic S phase","type":"exact"}],"termid":"FYPO:0005624"}


id: PBO:0074515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small NF90 (ILF3) associated RNA A7","termid":"PBO:0074515"}


id: GO:0003244
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenic growth in which the right ventricle grows along a radial axis.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth involved in heart morphogenesis","termid":"GO:0003241"},{"relation_name":"part_of","term_name":"cardiac right ventricle morphogenesis","termid":"GO:0003215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"radial growth involved in right ventricle morphogenesis","termid":"GO:0003244"}


id: PBO:0027969
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_RNA_level_during_cellular_response_to_diethyl_maleate","termid":"PBO:0027969"}


id: PR:O14148
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA helicase INO80 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02246"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA helicase ino80 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29B12.01","secondary_identifiers":["UniProtKB:O14148"],"synonyms":[{"name":"Spom972h-INO80","type":"exact"}],"termid":"PR:O14148"}


id: FYPO:0003131
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins is normal (i.e. indistinguishable from wild type) during a cellular response to ionizing radiation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation during vegetative growth","termid":"FYPO:0000776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal protein phosphorylation during cellular response to ionizing radiation","synonyms":[{"name":"normal protein phosphorylation during cellular response to IR","type":"exact"},{"name":"normal protein phosphorylation during cellular response to ionizing radiation during mitotic cell cycle","type":"related"},{"name":"normal protein phosphorylation during cellular response to ionizing radiation during vegetative growth","type":"exact"}],"termid":"FYPO:0003131"}


id: PBO:0031836
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_RNA_localization_during_vegetative_growth","termid":"PBO:0031836"}


id: PBO:0063650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate mutase 1 pseudogene 7","termid":"PBO:0063650"}


id: PBO:0001900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase zeta catalytic subunit Rev3 (predicted)","termid":"PBO:0001900"}


id: PBO:0047026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 91 member A1","termid":"PBO:0047026"}


id: PBO:0000958
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5.3.3.5","termid":"PBO:0000958"}


id: FYPO:0005098
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of poly(A) polymerase activity (EC name polynucleotide adenylyltransferase activity) is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000654","FYPO:0000661","FYPO:0000707"],"is_obsolete":false,"name":"abnormal poly(A) polymerase activity","synonyms":[{"name":"abnormal PAP activity","type":"exact"},{"name":"abnormal polynucleotide adenylyltransferase activity","type":"exact"}],"termid":"FYPO:0005098"}


id: PBO:0084929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA binding protein, member of the CCCH zinc finger family; similar to mammalian Tis11 protein, which activates transcription and also has a role in mRNA degradation; functions with Tis11p in regulation of iron homeostasis; CTH1 has a paralog, TIS11, that arose from the whole genome duplication","termid":"PBO:0084929"}


id: GO:0050807
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the physical form of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell).","definition_xrefs":["GOC:dph","GOC:ai","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular component organization","termid":"GO:0051128"},{"relation_name":"part_of","term_name":"regulation of synapse structure or activity","termid":"GO:0050803"},{"relation_name":"regulates","term_name":"synapse organization","termid":"GO:0050808"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of synapse organization","synonyms":[{"name":"regulation of synapse organisation","type":"exact"},{"name":"regulation of synapse organization and biogenesis","type":"related"},{"name":"regulation of synapse structure","type":"exact"}],"termid":"GO:0050807"}


id: PBO:0053494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 472","termid":"PBO:0053494"}


id: PBO:0086335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Proton:glutathione antiporter; localized to the vacuolar and plasma membranes; imports glutathione from the vacuole and exports it through the plasma membrane; has a role in resistance to oxidative stress and modulation of the PKA pathway; GEX1 has a paralog, GEX2, that arose from a segmental duplication","termid":"PBO:0086335"}


id: MOD:00391
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O-octanoyl-L-threonine.","definition_xrefs":["Unimod:426#T","PubMed:12716131","PubMed:11546772","RESID:AA0386"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-octanoylated residue","termid":"MOD:00669"},{"relation_name":"is_a","term_name":"O3-acylated L-threonine","termid":"MOD:02004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"O-octanoyl-L-threonine","synonyms":[{"name":"(2S)-2-amino-3-(octanoyloxy)butanoic acid","type":"exact"},{"name":"L-threonine octanoate ester","type":"exact"},{"name":"LIPID O-octanoyl threonine","type":"exact"},{"name":"O-octanoyl-L-threonine","type":"exact"},{"name":"O-octanoylated L-threonine","type":"exact"},{"name":"O3-octanoyl-L-threonine","type":"exact"},{"name":"OOctThr","type":"exact"},{"name":"Octanoyl","type":"related"},{"name":"octanoyl","type":"related"}],"termid":"MOD:00391"}


id: PBO:0060554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurobeachin","termid":"PBO:0060554"}


id: GO:0036373
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-L-fucose = beta-L-fucose.","definition_xrefs":["PMID:15060078","GOC:crds","RHEA:25580"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on carbohydrates and derivatives","termid":"GO:0016857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"L-fucose mutarotase activity","secondary_identifiers":["EC:5.1.3.29","MetaCyc:RXN0-5298"],"synonyms":[{"name":"alpha-L-fucose 1-epimerase activity","type":"related"},{"name":"fucose 1-epimerase activity","type":"related"},{"name":"type-2 mutarotase activity","type":"related"}],"termid":"GO:0036373"}


id: PBO:0044051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CSRP2 pseudogene 2","termid":"PBO:0044051"}


id: GO:0006755
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete carbamoyl phosphate-ADP transphosphorylation (obsolete GO:0006755)","synonyms":[{"name":"carbamoyl phosphate-ADP transphosphorylation","type":"exact"}],"termid":"GO:0006755"}


id: PBO:0042677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEA cell adhesion molecule pseudogene 11","termid":"PBO:0042677"}


id: PBO:0058540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6085","termid":"PBO:0058540"}


id: PBO:0031902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MICOS complex subunit Mic60 (predicted)","termid":"PBO:0031902"}


id: PBO:0065915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RABGEF1 pseudogene 1","termid":"PBO:0065915"}


id: GO:0008268
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete receptor signaling protein tyrosine kinase signaling protein activity (obsolete GO:0008268)","synonyms":[{"name":"receptor signaling protein tyrosine kinase signaling protein activity","type":"exact"},{"name":"receptor signalling protein tyrosine kinase signalling protein activity","type":"exact"}],"termid":"GO:0008268"}


id: GO:1902331
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any DNA strand elongation that is involved in bacterial-type DNA replication.","definition_xrefs":["GOC:TermGenie","GOC:mtg_cell_cycle"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA strand elongation involved in bacterial-type DNA replication (obsolete GO:1902331)","termid":"GO:1902331"}


id: FYPO:0006128
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the duration of the second meiotic nuclear division is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal meiosis II","termid":"FYPO:0003798"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal duration of meiosis II","synonyms":[{"name":"normal duration of second meiotic nuclear division","type":"exact"}],"termid":"FYPO:0006128"}


id: PBO:0059750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 24","termid":"PBO:0059750"}


id: GO:0102419
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: omega-hydroxy-C22:0-CoA + sn-glycerol 3-phosphate = coenzyme A + 2-omega-hydroxy-C22:0-LPA.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete sn-2-glycerol-3-phosphate omega-OH-C22:0-CoA acyl transferase activity (obsolete GO:0102419)","termid":"GO:0102419"}


id: PBO:0053805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1063","termid":"PBO:0053805"}


id: PBO:0012064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dipeptide transmembrane transporter Dal5h1 (predicted)","termid":"PBO:0012064"}


id: PBO:0016582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complememtnation, functionally complements S. cerevisiae YOR330C","termid":"PBO:0016582"}


id: GO:0052148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism effects a change in host enzyme activity. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:tb","GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by symbiont of host catalytic activity (obsolete GO:0052148)","synonyms":[{"name":"modulation by symbiont of host enzyme activity","type":"exact"},{"name":"modulation of catalytic activity of host by symbiont","type":"exact"},{"name":"regulation by symbiont of host catalytic activity","type":"exact"},{"name":"regulation of catalytic activity of host by symbiont","type":"exact"},{"name":"regulation of host catalytic activity by symbiont","type":"exact"}],"termid":"GO:0052148"}


id: GO:0038088
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by vascular endothelial growth factor (VEGF) binding to a beta-type platelet-derived growth factor receptor (PDGFR) on the surface of a cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:17470632","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"platelet-derived growth factor receptor-beta signaling pathway","termid":"GO:0035791"},{"relation_name":"is_a","term_name":"VEGF-activated platelet-derived growth factor receptor signaling pathway","termid":"GO:0038086"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"VEGF-activated platelet-derived growth factor receptor-beta signaling pathway","synonyms":[{"name":"VEGF-A/PDGFRbeta signaling","type":"narrow"},{"name":"VEGF-activated PDGFRbeta signalling pathway","type":"exact"},{"name":"VEGF-activated platelet-derived growth factor receptor-beta signalling pathway","type":"exact"},{"name":"VEGF/PDGFRbeta signaling pathway","type":"exact"},{"name":"vascular endothelial growth factor-activated platelet-derived growth factor receptor-beta signaling pathway","type":"exact"}],"termid":"GO:0038088"}


id: GO:1900011
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of corticotropin-releasing hormone receptor activity.","definition_xrefs":["GOC:TermGenie","PMID:18234674","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of corticotropin-releasing hormone receptor activity","termid":"GO:1900010"},{"relation_name":"is_a","term_name":"negative regulation of signaling receptor activity","termid":"GO:2000272"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of corticotropin-releasing hormone receptor activity","synonyms":[{"name":"down regulation of CRF receptor activity","type":"exact"},{"name":"down regulation of CRH receptor activity","type":"exact"},{"name":"down regulation of adrenocorticotropin-releasing hormone receptor activity","type":"exact"},{"name":"down regulation of corticotropin-releasing factor receptor activity","type":"exact"},{"name":"down regulation of corticotropin-releasing hormone receptor activity","type":"related"},{"name":"negative regulation of CRF receptor activity","type":"exact"},{"name":"negative regulation of CRH receptor activity","type":"exact"},{"name":"negative regulation of adrenocorticotropin-releasing hormone receptor activity","type":"exact"},{"name":"negative regulation of corticotropin-releasing factor receptor activity","type":"exact"}],"termid":"GO:1900011"}


id: PBO:0089263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dubious, SPNCRNA.800  syntenic position","termid":"PBO:0089263"}


id: PBO:0050348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 51","termid":"PBO:0050348"}


id: PBO:0110386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3123","termid":"PBO:0110386"}


id: PATO:0001311
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A duration of temperature which is lesser relative to the normal or average enduring or continuing in time.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"decreased duration","termid":"PATO:0000499"},{"relation_name":"is_a","term_name":"duration of temperature","termid":"PATO:0001310"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased duration of temperature","termid":"PATO:0001311"}


id: GO:0046124
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of any one of a family of organic molecules consisting of a purine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleoside catabolic process","termid":"GO:0006152"},{"relation_name":"is_a","term_name":"deoxyribonucleoside catabolic process","termid":"GO:0046121"},{"relation_name":"is_a","term_name":"purine deoxyribonucleoside metabolic process","termid":"GO:0046122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"purine deoxyribonucleoside catabolic process","synonyms":[{"name":"purine deoxyribonucleoside breakdown","type":"exact"},{"name":"purine deoxyribonucleoside catabolism","type":"exact"},{"name":"purine deoxyribonucleoside degradation","type":"exact"}],"termid":"GO:0046124"}


id: PBO:0070134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 48 pseudogene","termid":"PBO:0070134"}


id: GO:0140829
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(in) + HCO3-(out) = solute(out) + HCO3-(in).","definition_xrefs":["PMID:12440690"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic anion transmembrane transporter activity","termid":"GO:0008509"},{"relation_name":"is_a","term_name":"bicarbonate transmembrane transporter activity","termid":"GO:0015106"},{"relation_name":"is_a","term_name":"antiporter activity","termid":"GO:0015297"},{"relation_name":"is_a","term_name":"active monoatomic ion transmembrane transporter activity","termid":"GO:0022853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"bicarbonate:monoatomic anion antiporter activity","secondary_identifiers":["TC:2.A.31.1.1"],"synonyms":[{"name":"bicarbonate:anion antiporter activity","type":"broad"},{"name":"hydrogencarbonate:monoatomic anion antiporter activity","type":"exact"}],"termid":"GO:0140829"}


id: GO:0061245
data:
  {"annotated_genes":["SJAG_04322","SJAG_00030","SJAG_01799","SJAG_03048","SJAG_00236","SJAG_01388","SJAG_00333","SJAG_01196","SJAG_02392","SJAG_04461","SJAG_04522","SJAG_03581","SJAG_00268","SJAG_04703","SJAG_00596","SJAG_00845","SJAG_00514","SJAG_00661","SJAG_02022","SJAG_03637"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85932,90629,91890,95671,95763,100649,103611,108308,110050,114632],"is_not":false,"summary":null,"term":"GO:0061245"},{"annotations":[100535],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061246"},{"annotations":[89784,96198,99716,101353],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:2000247"},{"annotations":[99717],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0061361"},{"annotations":[98409,89785],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:2000099"},{"annotations":[96201,114777,87185,90634,91708,101356,100539,109059],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:2000100"}]},"cv_name":"biological_process","definition":"Any cellular process that results in the specification, formation or maintenance of a bipolar intracellular organization or cell growth patterns.","definition_xrefs":["GOC:vw","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment or maintenance of cell polarity","termid":"GO:0007163"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00030":null,"SJAG_00236":null,"SJAG_00268":null,"SJAG_00333":null,"SJAG_00514":null,"SJAG_00596":null,"SJAG_00661":null,"SJAG_00845":null,"SJAG_01196":null,"SJAG_01388":null,"SJAG_01799":null,"SJAG_02022":null,"SJAG_02392":null,"SJAG_03048":null,"SJAG_03581":null,"SJAG_03637":null,"SJAG_04322":null,"SJAG_04461":null,"SJAG_04522":null,"SJAG_04703":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007163","GO:0008150"],"is_obsolete":false,"name":"establishment or maintenance of bipolar cell polarity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0061245","terms_by_termid":{"GO:0061245":null,"GO:0061246":null,"GO:0061361":null,"GO:2000099":null,"GO:2000100":null,"GO:2000247":null}}


id: PBO:0081965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZPR1 zinc finger","termid":"PBO:0081965"}


id: PBO:0083855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Expressed copy (at MATa) of a1; homeobox-domain protein that, along with alpha2, represses transcription of haploid-specific genes in diploid cells; MATa1 pre-mRNA splicing requires Bud13p and Ist3p; a1 sequence is not present in SGD because the sequenced S288C strain is MATalpha, not MATa","termid":"PBO:0083855"}


id: GO:0090100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of the series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of transmembrane receptor protein serine/threonine kinase signaling pathway","termid":"GO:0090092"},{"relation_name":"positively_regulates","term_name":"cell surface receptor protein serine/threonine kinase signaling pathway","termid":"GO:0007178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway","synonyms":[{"name":"positive regulation of transmembrane receptor protein serine/threonine kinase signalling pathway","type":"exact"}],"termid":"GO:0090100"}


id: GO:0030047
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Covalent modification of an actin molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin cytoskeleton organization","termid":"GO:0030036"},{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0030036"}],"interesting_parent_ids":["GO:0008150","GO:0007010","GO:0030036"],"is_obsolete":false,"name":"actin modification","secondary_identifiers":["GO:0007013"],"termid":"GO:0030047"}


id: PBO:0078067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 57","termid":"PBO:0078067"}


id: PBO:0078793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (GTT) 15-2","termid":"PBO:0078793"}


id: GO:0061102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a neuroendocrine cell of the stomach epithelium.","definition_xrefs":["GOC:dph","PMID:18173746"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enteroendocrine cell differentiation","termid":"GO:0035883"},{"relation_name":"is_a","term_name":"neuroendocrine cell differentiation","termid":"GO:0061101"},{"relation_name":"part_of","term_name":"stomach development","termid":"GO:0062094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"stomach neuroendocrine cell differentiation","synonyms":[{"name":"gastric neuroendocrine cell differentiation","type":"related"}],"termid":"GO:0061102"}


id: GO:0036458
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a hepatocyte growth factor.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth factor binding","termid":"GO:0019838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"hepatocyte growth factor binding","synonyms":[{"name":"HGF binding","type":"exact"}],"termid":"GO:0036458"}


id: PBO:0034086
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-towards","termid":"PBO:0034086"}


id: PBO:0078630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif family like 1","termid":"PBO:0078630"}


id: GO:1901631
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of presynaptic membrane organization.","definition_xrefs":["GOC:TermGenie","PMID:22426000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"is_a","term_name":"regulation of presynaptic membrane organization","termid":"GO:1901629"},{"relation_name":"positively_regulates","term_name":"presynaptic membrane organization","termid":"GO:0097090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"positive regulation of presynaptic membrane organization","synonyms":[{"name":"activation of presynaptic membrane organisation","type":"narrow"},{"name":"activation of presynaptic membrane organization","type":"narrow"},{"name":"positive regulation of pre-synaptic membrane organization","type":"exact"},{"name":"positive regulation of presynaptic membrane organisation","type":"exact"},{"name":"up regulation of presynaptic membrane organisation","type":"exact"},{"name":"up regulation of presynaptic membrane organization","type":"exact"},{"name":"up-regulation of presynaptic membrane organisation","type":"exact"},{"name":"up-regulation of presynaptic membrane organization","type":"exact"},{"name":"upregulation of presynaptic membrane organisation","type":"exact"},{"name":"upregulation of presynaptic membrane organization","type":"exact"}],"termid":"GO:1901631"}


id: GO:0001586
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with serotonin and transmitting the signal across the membrane by activation of the Gi/o subunit of an associated cytoplasmic heterotrimeric G protein complex. The Gi/o subunit subsequently inhibits adenylate cyclase and results in a decrease in cyclic AMP (cAMP) levels.","definition_xrefs":["GOC:mah","PMID:18571247"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled serotonin receptor activity","termid":"GO:0004993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"Gi/o-coupled serotonin receptor activity","synonyms":[{"name":"5-HT1 receptor activity","type":"exact"},{"name":"serotonin receptor activity, coupled via Gi/o","type":"exact"}],"termid":"GO:0001586"}


id: FYPO:0001510
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a cell is viable, cell shape is altered, and cell size remains normal, in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vegetative cell, abnormal cell shape, normal cell size","termid":"FYPO:0001121"},{"relation_name":"is_a","term_name":"viable vegetative cell with normal cell size","termid":"FYPO:0002176"},{"relation_name":"is_a","term_name":"viable vegetative cell with abnormal cell shape","termid":"FYPO:0002197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000005","FYPO:0000004","FYPO:0001312","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"viable vegetative cell, abnormal cell shape, normal cell size","synonyms":[{"name":"viable lumpy cell","type":"related"},{"name":"viable vegetative cell with abnormal cell shape and normal cell size","type":"related"},{"name":"viable vegetative cell, abnormal cell shape, normal cell length","type":"narrow"},{"name":"viable vegetative cell, abnormal cell shape, normal cell size during mitotic cell cycle","type":"related"},{"name":"viable, abnormal cell shape, normal cell size during vegetative growth","type":"exact"}],"termid":"FYPO:0001510"}


id: PBO:0072887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain binding kinase family member 2","termid":"PBO:0072887"}


id: PR:Q09719
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-dependent RNA helicase DDX54 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR24031:SF17","OMA:SCHPO00156","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase dbp10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31A2.07c","secondary_identifiers":["UniProtKB:Q09719"],"synonyms":[{"name":"Spom972h-DDX54","type":"exact"}],"termid":"PR:Q09719"}


id: PBO:0108987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm microtubule inner protein 11","termid":"PBO:0108987"}


id: PBO:0090428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTREC (exosome adaptor) complex RNA-binding subunit Rmn1","termid":"PBO:0090428"}


id: PBO:0054485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1885","termid":"PBO:0054485"}


id: GO:0005769
data:
  {"annotated_genes":["SJAG_04616","SJAG_00314","SJAG_01112","SJAG_01135","SJAG_02240","SJAG_01379","SJAG_03250","SJAG_01309","SJAG_01448","SJAG_01382"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72084,73678,85376,95716,95927,98671,100822],"is_not":false,"summary":null,"term":"GO:0005769"},{"annotations":[91935,95732,108456],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031901"}]},"cv_name":"cellular_component","definition":"A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.","definition_xrefs":["GOC:mah","NIF_Subcellular:nlx_subcell_20090701","PMID:19696797"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endosome","termid":"GO:0005768"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00314":null,"SJAG_01112":null,"SJAG_01135":null,"SJAG_01309":null,"SJAG_01379":null,"SJAG_01382":null,"SJAG_01448":null,"SJAG_02240":null,"SJAG_03250":null,"SJAG_04616":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005768"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0031410","GO:0005768","GO:0005737"],"is_obsolete":false,"name":"early endosome","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0005769","terms_by_termid":{"GO:0005769":null,"GO:0031901":null}}


id: PBO:0039512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 30B like","termid":"PBO:0039512"}


id: GO:0051700
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: fructosyl-amino acid + O2 = corresponding amino acid + glucosone + H2O2.","definition_xrefs":["PMID:16233628"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor","termid":"GO:0016647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"fructosyl-amino acid oxidase activity","synonyms":[{"name":"FAOD activity","type":"exact"}],"termid":"GO:0051700"}


id: PBO:0040628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"B cell scaffold protein with ankyrin repeats 1","termid":"PBO:0040628"}


id: GO:0033015
data:
  {"annotated_genes":["SJAG_00366"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102591],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042167"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways leading to the breakdown of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"tetrapyrrole metabolic process","termid":"GO:0033013"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00366":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"tetrapyrrole catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"tetrapyrrole breakdown","type":"exact"},{"name":"tetrapyrrole catabolism","type":"exact"},{"name":"tetrapyrrole degradation","type":"exact"}],"termid":"GO:0033015","terms_by_termid":{"GO:0042167":null}}


id: GO:0009034
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-tryptophan + H2O = indole + NH4 + pyruvate.","definition_xrefs":["RHEA:19553"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-carbon lyase activity","termid":"GO:0016830"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"tryptophanase activity","secondary_identifiers":["KEGG_REACTION:R00673","EC:4.1.99.1","MetaCyc:TRYPDEG-PWY","MetaCyc:TRYPTOPHAN-RXN"],"synonyms":[{"name":"L-tryptophan indole-lyase (deaminating) activity","type":"related"},{"name":"L-tryptophan indole-lyase (deaminating; pyruvate forming) activity","type":"related"},{"name":"L-tryptophan indole-lyase activity","type":"related"},{"name":"L-tryptophanase activity","type":"related"},{"name":"TNase activity","type":"related"},{"name":"tryptophan catabolic process, using tryptophanase","type":"related"},{"name":"tryptophan catabolism, using tryptophanase","type":"related"}],"termid":"GO:0009034"}


id: PR:O74551
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC777.12c gene.","definition_xrefs":["UniProtKB:O74551","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C777.12c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC777.12c","synonyms":[{"name":"Spom972h-SPCC777.12c","type":"exact"}],"termid":"PR:O74551"}


id: PR:Q09680
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC5H10.12c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09680"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C5H10.12c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC5H10.12c","synonyms":[{"name":"Spom972h-SPAC5H10.12c","type":"exact"}],"termid":"PR:Q09680"}


id: GO:1901962
data:
  {"annotated_genes":["SJAG_01890","SJAG_01589"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[63739,68490],"is_not":false,"summary":null,"term":"GO:1901962"},{"annotations":[98621,84342],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990543"}]},"cv_name":"biological_process","definition":"The directed movement of S-adenosyl-L-methionine across a membrane.","definition_xrefs":["GOC:TermGenie","PMID:10497160"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosyl-L-methionine transport","termid":"GO:0015805"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01589":null,"SJAG_01890":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"S-adenosyl-L-methionine transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"S-adenosylmethionine transmembrane transport","type":"exact"},{"name":"SAM transmembrane transport","type":"exact"}],"termid":"GO:1901962","terms_by_termid":{"GO:1901962":null,"GO:1990543":null}}


id: GO:1905116
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of lateral attachment of mitotic spindle microtubules to kinetochore.","definition_xrefs":["PMID:22375062","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of attachment of mitotic spindle microtubules to kinetochore","termid":"GO:1902425"},{"relation_name":"is_a","term_name":"regulation of lateral attachment of mitotic spindle microtubules to kinetochore","termid":"GO:1905115"},{"relation_name":"positively_regulates","term_name":"lateral attachment of mitotic spindle microtubules to kinetochore","termid":"GO:0099607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0000070"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0000070","GO:0007049"],"is_obsolete":false,"name":"positive regulation of lateral attachment of mitotic spindle microtubules to kinetochore","synonyms":[{"name":"activation of lateral attachment of mitotic spindle microtubules to kinetochore","type":"narrow"},{"name":"up regulation of lateral attachment of mitotic spindle microtubules to kinetochore","type":"exact"},{"name":"up-regulation of lateral attachment of mitotic spindle microtubules to kinetochore","type":"exact"},{"name":"upregulation of lateral attachment of mitotic spindle microtubules to kinetochore","type":"exact"}],"termid":"GO:1905116"}


id: GO:0031516
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The function of absorbing and responding to electromagnetic radiation with a wavelength of approximately 730nm. The response may involve a change in conformation.","definition_xrefs":["GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"red or far-red light photoreceptor activity","termid":"GO:0009883"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"far-red light photoreceptor activity","termid":"GO:0031516"}


id: PBO:0076576
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 3 pseudogene 4","termid":"PBO:0076576"}


id: PBO:0052632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8","termid":"PBO:0052632"}


id: PBO:0050186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 3","termid":"PBO:0050186"}


id: PBO:0075420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm associated antigen 6","termid":"PBO:0075420"}


id: MOD:01264
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative -","definition_xrefs":["Unimod:270#C","PubMed:15549660"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleophilic addtion to cytopiloyne","termid":"MOD:00590"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophilic addtion to cytopiloyne - site C","synonyms":[{"name":"Cytopiloyne","type":"related"},{"name":"nucleophilic addtion to cytopiloyne","type":"related"}],"termid":"MOD:01264"}


id: PBO:0073807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC6A12 antisense RNA 1","termid":"PBO:0073807"}


id: PBO:0081460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 329","termid":"PBO:0081460"}


id: PBO:0088776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin/importin beta family nuclear import signal receptor Kap111","termid":"PBO:0088776"}


id: PBO:0054551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1951","termid":"PBO:0054551"}


id: FYPO:0000730
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A spindle phenotype in which the spindle is longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal spindle morphology","termid":"FYPO:0003607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"is_a","termid":"FYPO:0002399"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000054","FYPO:0001985","FYPO:0005447","FYPO:0002399","FYPO:0000120"],"is_obsolete":false,"name":"long spindle","synonyms":[{"name":"elongated spindle","type":"exact"},{"name":"increased spindle length","type":"exact"},{"name":"long spindles","type":"exact"}],"termid":"FYPO:0000730"}


id: PBO:0026805
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_meiotic_DNA_double-strand_break_formation","termid":"PBO:0026805"}


id: GO:0102911
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (-)-secoisolariciresinol + NAD = H+ + (-)-lactol + NADH.","definition_xrefs":["GOC:pz","EC:1.1.1.331"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"(-)-secoisolariciresinol dehydrogenase activity","secondary_identifiers":["MetaCyc:RXN-8680"],"termid":"GO:0102911"}


id: PBO:0046522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ermin","termid":"PBO:0046522"}


id: GO:0046190
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring, in the presence of oxygen.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aerobic phenol-containing compound metabolic process","termid":"GO:0018959"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"aerobic phenol-containing compound biosynthetic process","synonyms":[{"name":"aerobic phenol-containing compound anabolism","type":"exact"},{"name":"aerobic phenol-containing compound biosynthesis","type":"exact"},{"name":"aerobic phenol-containing compound formation","type":"exact"},{"name":"aerobic phenol-containing compound synthesis","type":"exact"}],"termid":"GO:0046190"}


id: PBO:0051842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insulin receptor substrate 4","termid":"PBO:0051842"}


id: PBO:0070728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L9 pseudogene 33","termid":"PBO:0070728"}


id: PBO:0110257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTREC associated protein Ctr1","termid":"PBO:0110257"}


id: _global:regulates_o_results_in_morphogenesis_of
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"This is the combination of the regulates relation with the results_in_morphogenesis_of relation.","definition_xrefs":["GOC:mtg_berkeley_2013"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulates_morphogenesis_of","secondary_identifiers":["GOREL:0001026"],"termid":"_global:regulates_o_results_in_morphogenesis_of"}


id: PBO:0088226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neddylation protein Dcn1","termid":"PBO:0088226"}


id: GO:0021837
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The signaling that results in the stimulation of cell movement in the rostral migratory stream.","definition_xrefs":["GOC:jid","GOC:cls","GO_REF:0000021","GOC:dgh","GOC:dph","PMID:12626695"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell communication","termid":"GO:0007154"},{"relation_name":"is_a","term_name":"signaling","termid":"GO:0023052"},{"relation_name":"part_of","term_name":"postnatal olfactory bulb interneuron migration","termid":"GO:0021827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"motogenic signaling involved in postnatal olfactory bulb interneuron migration","synonyms":[{"name":"motogenic signalling involved in postnatal olfactory bulb interneuron migration","type":"exact"}],"termid":"GO:0021837"}


id: GO:0044795
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of substances, in membrane-bounded vesicles, from the trans-Golgi network to the recycling endosomes.","definition_xrefs":["GOC:lb","PMID:18779367"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endosomal transport","termid":"GO:0016197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"trans-Golgi network to recycling endosome transport","termid":"GO:0044795"}


id: PBO:0045774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ecm29 proteasome adaptor and scaffold","termid":"PBO:0045774"}


id: GO:0140633
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a CARD8 inflammasome complex.","definition_xrefs":["PMID:33420033","PMID:33420028","PMID:33542150"],"direct_ancestors":[{"relation_name":"is_a","term_name":"canonical inflammasome complex assembly","termid":"GO:0140632"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0023052","GO:0044085"],"is_obsolete":false,"name":"CARD8 inflammasome complex assembly","termid":"GO:0140633"}


id: GO:0071462
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to water","termid":"GO:0009415"},{"relation_name":"is_a","term_name":"cellular response to abiotic stimulus","termid":"GO:0071214"},{"relation_name":"is_a","term_name":"cellular response to acid chemical","termid":"GO:0071229"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to water stimulus","termid":"GO:0071462"}


id: GO:1903470
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any actomyosin contractile ring assembly that is involved in mitotic cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle","GO_REF:0000060","GOC:TermGenie","PMID:1234"],"gene_count":0,"genotype_count":0,"name":"obsolete actomyosin contractile ring assembly involved in mitotic cell cycle (obsolete GO:1903470)","synonyms":[{"name":"constriction ring assembly involved in mitotic cell cycle","type":"narrow"},{"name":"contractile ring assembly involved in mitotic cell cycle","type":"exact"},{"name":"cytokinesis, actomyosin contractile ring assembly involved in mitotic cell cycle","type":"exact"},{"name":"cytokinesis, actomyosin contractile ring formation involved in mitotic cell cycle","type":"related"},{"name":"cytokinesis, actomyosin ring biosynthesis involved in mitotic cell cycle","type":"related"},{"name":"cytokinesis, actomyosin ring formation involved in mitotic cell cycle","type":"related"},{"name":"cytokinesis, contractile ring assembly involved in mitotic cell cycle","type":"related"}],"termid":"GO:1903470"}


id: GO:1900391
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of cAMP-mediated signaling.","definition_xrefs":["GOC:mah","PMID:15448137","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cAMP-mediated signaling by regulation of transcription from RNA polymerase II promoter (obsolete GO:1900391)","synonyms":[{"name":"regulation of cAMP-mediated signalling by regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:1900391"}


id: PR:O14136
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peroxisomal membrane protein PEX13 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR19332:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxisomal membrane protein pex13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3C7.10","secondary_identifiers":["UniProtKB:O14136"],"synonyms":[{"name":"SPAC3C7.10","type":"related"},{"name":"Spom972h-PEX13","type":"exact"},{"name":"peroxin-13 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14136"}


id: PBO:0081108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger AN1-type containing 2A","termid":"PBO:0081108"}


id: PBO:0088263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIF complex alpha subunit Tfg1","termid":"PBO:0088263"}


id: PBO:0088103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Uridine/cytidine kinase; component of the pyrimidine ribonucleotide salvage pathway that converts uridine into UMP and cytidine into CMP; involved in the pyrimidine deoxyribonucleotide salvage pathway, converting deoxycytidine into dCMP","termid":"PBO:0088103"}


id: PBO:0060976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuroglobin","termid":"PBO:0060976"}


id: PBO:0030276
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_processing","termid":"PBO:0030276"}


id: PBO:0017464
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_gene_product","termid":"PBO:0017464"}


id: GO:1903103
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of potassium:proton antiporter activity.","definition_xrefs":["GO_REF:0000088","GOC:TermGenie","GOC:bhm","PMID:21041667"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter complex","termid":"GO:1902495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"potassium:proton antiporter complex","termid":"GO:1903103"}


id: GO:0005542
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin binding","termid":"GO:0019842"},{"relation_name":"is_a","term_name":"carboxylic acid binding","termid":"GO:0031406"},{"relation_name":"is_a","term_name":"amide binding","termid":"GO:0033218"},{"relation_name":"is_a","term_name":"modified amino acid binding","termid":"GO:0072341"},{"relation_name":"is_a","term_name":"organic cyclic compound binding","termid":"GO:0097159"},{"relation_name":"is_a","term_name":"heterocyclic compound binding","termid":"GO:1901363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"folic acid binding","synonyms":[{"name":"folate binding","type":"exact"},{"name":"vitamin B9 binding","type":"exact"},{"name":"vitamin M binding","type":"exact"}],"termid":"GO:0005542"}


id: GO:1901259
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any rRNA processing that takes place in chloroplast.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA processing","termid":"GO:0006364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0042254"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0042254","GO:0008150","GO:0010467","GO:0044085"],"is_obsolete":false,"name":"chloroplast rRNA processing","termid":"GO:1901259"}


id: FYPO:0003877
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which a cell undergoes one round of cell division, instead of the normal two rounds, prior to entering quiescence (G0).","definition_xrefs":["PomBase:mah","PomBase:al","PMID:20133687"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal G1 to G0 transition","termid":"FYPO:0000427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"single cell division prior to G0 entry","synonyms":[{"name":"G0 to G1 transition after single cell division","type":"exact"},{"name":"one cell division prior to G0 entry","type":"exact"},{"name":"single cell division prior to cell quiescence entry","type":"exact"},{"name":"single cell division prior to quiescence entry","type":"exact"}],"termid":"FYPO:0003877"}


id: GO:0009506
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.","definition_xrefs":["PMID:29880547"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell junction","termid":"GO:0005911"},{"relation_name":"part_of","term_name":"symplast","termid":"GO:0055044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"plasmodesma","secondary_identifiers":["Wikipedia:Plasmodesma"],"synonyms":[{"name":"plasmodesmata","type":"exact"}],"termid":"GO:0009506"}


id: PBO:0001752
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.3.2.3","termid":"PBO:0001752"}


id: PBO:0091387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glomulin, ubiquitin-protein transferase inhibitor Glm1","termid":"PBO:0091387"}


id: PBO:0045729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E2F transcription factor 8","termid":"PBO:0045729"}


id: FYPO:0000705
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of one protein to another does not occur. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein-protein interaction","termid":"FYPO:0000704"},{"relation_name":"is_a","term_name":"abolished molecular function","termid":"FYPO:0005446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000702","FYPO:0000707","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"abolished protein-protein interaction","synonyms":[{"name":"abolished protein binding","type":"exact"},{"name":"protein binding abolished","type":"exact"}],"termid":"FYPO:0000705"}


id: PBO:0065556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostaglandin E synthase 2","termid":"PBO:0065556"}


id: GO:1903441
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a ciliary membrane.","definition_xrefs":["PMID:22139371","GO_REF:0000087","GOC:cilia","GOC:krc","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to cilium","termid":"GO:0061512"},{"relation_name":"is_a","term_name":"protein localization to membrane","termid":"GO:0072657"},{"relation_name":"is_a","term_name":"protein localization to cell periphery","termid":"GO:1990778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to ciliary membrane","synonyms":[{"name":"protein localisation in ciliary membrane","type":"exact"},{"name":"protein localisation to ciliary membrane","type":"exact"},{"name":"protein localization in ciliary membrane","type":"exact"}],"termid":"GO:1903441"}


id: GO:0001681
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-acetyl-O-acetylneuraminate (free or glycosidically bound) + H2O = N-acetylneuraminate + acetate.","definition_xrefs":["PMID:1991039","EC:3.1.1.53"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylesterase activity","termid":"GO:0008126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016788","GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"sialate O-acetylesterase activity","secondary_identifiers":["MetaCyc:RXN-13182","MetaCyc:RXN-13181"],"synonyms":[{"name":"N-acetylneuraminate acetyltransferase activity","type":"related"}],"termid":"GO:0001681"}


id: PR:O74470
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC1739.08c gene.","definition_xrefs":["UniProtKB:O74470","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized oxidoreductase C1739.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1739.08c","synonyms":[{"name":"Spom972h-SPCC1739.08c","type":"exact"}],"termid":"PR:O74470"}


id: PBO:0091064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-3-methyladenine glycosylase Mag2","termid":"PBO:0091064"}


id: PBO:0005245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L2 (predicted)","termid":"PBO:0005245"}


id: GO:0071395
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to jasmonic acid","termid":"GO:0009753"},{"relation_name":"is_a","term_name":"cellular response to hormone stimulus","termid":"GO:0032870"},{"relation_name":"is_a","term_name":"cellular response to fatty acid","termid":"GO:0071398"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to jasmonic acid stimulus","termid":"GO:0071395"}


id: PBO:0054533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1933","termid":"PBO:0054533"}


id: GO:0003431
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of a growth plate cartilage chondrocyte over time from after its fate commitment to the mature cell.","definition_xrefs":["GOC:tb","GOC:ascb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chondrocyte development involved in endochondral bone morphogenesis","termid":"GO:0003433"},{"relation_name":"part_of","term_name":"growth plate cartilage chondrocyte differentiation","termid":"GO:0003418"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"growth plate cartilage chondrocyte development","termid":"GO:0003431"}


id: PBO:0028191
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_rate_of_pre-replicative_complex_assembly","termid":"PBO:0028191"}


id: MOD:01907
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-methioninium (protonated L-methionine) residue to dehydromethionine.","definition_xrefs":["PubMed:19775156","PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"protonated L-methionine (L-methioninium) residue","termid":"MOD:01464"},{"relation_name":"is_a","term_name":"cyclized residue","termid":"MOD:00601"},{"relation_name":"is_a","term_name":"modified L-methionine residue","termid":"MOD:00913"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dehydromethionine (from L-methioninium)","synonyms":[{"name":"(3S)-3-carboxy-1-methylisothiazolidin-1-ium","type":"exact"},{"name":"L-dehydromethionine","type":"exact"}],"termid":"MOD:01907"}


id: PBO:0071428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 34","termid":"PBO:0071428"}


id: GO:0047529
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2R,3S)-2,3-dimethylmalate = propanoate + pyruvate.","definition_xrefs":["EC:4.1.3.32","RHEA:10472"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxo-acid-lyase activity","termid":"GO:0016833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"2,3-dimethylmalate lyase activity","secondary_identifiers":["MetaCyc:23-DIMETHYLMALATE-LYASE-RXN","KEGG_REACTION:R01355"],"synonyms":[{"name":"(2R,3S)-2,3-dimethylmalate pyruvate-lyase (propanoate-forming)","type":"related"},{"name":"(2R,3S)-2,3-dimethylmalate pyruvate-lyase activity","type":"related"},{"name":"2,3-dimethylmalate pyruvate-lyase activity","type":"related"}],"termid":"GO:0047529"}


id: PBO:0056395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAPRE1 pseudogene 2","termid":"PBO:0056395"}


id: GO:0045659
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of neutrophil differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of granulocyte differentiation","termid":"GO:0030853"},{"relation_name":"is_a","term_name":"regulation of neutrophil differentiation","termid":"GO:0045658"},{"relation_name":"negatively_regulates","term_name":"neutrophil differentiation","termid":"GO:0030223"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of neutrophil differentiation","synonyms":[{"name":"down regulation of neutrophil differentiation","type":"exact"},{"name":"down-regulation of neutrophil differentiation","type":"exact"},{"name":"downregulation of neutrophil differentiation","type":"exact"},{"name":"inhibition of neutrophil differentiation","type":"narrow"}],"termid":"GO:0045659"}


id: GO:0070210
data:
  {"annotated_genes":["SJAG_01230","SJAG_01926","SJAG_00868","SJAG_02439","SJAG_02981","SJAG_03441","SJAG_03627","SJAG_00441","SJAG_03230","SJAG_04389","SJAG_04758","SJAG_04396","SJAG_03867","SJAG_03255","SJAG_04576","SJAG_00581","SJAG_02846"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[74779,77657,85175,89236,89273,90688,91490,93257,98793,99864,100717,101020,102742,105462,106471,110147,110238],"is_not":false,"summary":null,"term":"GO:0070210"}]},"cv_name":"cellular_component","definition":"A protein complex that contains a histone deacetylase and is part of the chromatin remodeling machinery. In Saccharomyces cerevisiae this complex contains the Rpd3p, Sin3p, Ume1p, Pho23p, Sap30p, Sds3p, Cti6p, Rxt2p, Rxt3p, Dep1p, Ume6p, Ash1p, Dot6p, Snt1, Sif2p, Set3p, Hos2p, Tos4p and Tod6p proteins.","definition_xrefs":["PMID:19040720","GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone deacetylase complex","termid":"GO:0000118"},{"relation_name":"part_of","term_name":"nuclear chromosome","termid":"GO:0000228"},{"relation_name":"part_of","term_name":"chromatin","termid":"GO:0000785"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00441":null,"SJAG_00581":null,"SJAG_00868":null,"SJAG_01230":null,"SJAG_01926":null,"SJAG_02439":null,"SJAG_02846":null,"SJAG_02981":null,"SJAG_03230":null,"SJAG_03255":null,"SJAG_03441":null,"SJAG_03627":null,"SJAG_03867":null,"SJAG_04389":null,"SJAG_04396":null,"SJAG_04576":null,"SJAG_04758":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005654"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991","GO:0005694","GO:0005654"],"is_obsolete":false,"name":"Rpd3L-Expanded complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"Clr6-LE complex","type":"exact"}],"termid":"GO:0070210","terms_by_termid":{"GO:0070210":null}}


id: GO:0048728
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the proboscis over time, from its formation to the mature structure.","definition_xrefs":["GOC:rc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"},{"relation_name":"part_of","term_name":"clypeo-labral disc development","termid":"GO:0035213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"proboscis development","secondary_identifiers":["GO:0016349"],"termid":"GO:0048728"}


id: FYPO:0000991
data:
  {"alleles_by_uniquename":{"SJAG_03689:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03689","name":"dcr1delta","uniquename":"SJAG_03689:allele-1"},"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115584],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004205"},{"annotations":[115542],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003727"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of a specific substance measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell","termid":"FYPO:0000989"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03689":null,"SJAG_04697":null},"genotype_count":2,"genotypes_by_uniquename":{"dcr1delta":{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]},"gms1delta":{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased level of substance in cell","references_by_uniquename":{"PMID:35226668":null,"PMID:36058798":null},"single_locus_annotated_genes":["SJAG_03689","SJAG_04697"],"single_locus_genotype_uniquenames":["gms1delta","dcr1delta"],"synonyms":[{"name":"reduced level of substance in cell","type":"exact"}],"termid":"FYPO:0000991","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000162":null,"FYPO:0003727":null,"FYPO:0004205":null,"FYPO_EXT:0000001":null}}


id: PBO:0042134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cholecystokinin","termid":"PBO:0042134"}


id: PBO:0074697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 70G","termid":"PBO:0074697"}


id: PBO:0041130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTB domain containing 10","termid":"PBO:0041130"}


id: PBO:0001886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DASH complex subunit Dam1","termid":"PBO:0001886"}


id: GO:0010470
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate or extent of gastrulation. Gastrulation is the complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anatomical structure morphogenesis","termid":"GO:0022603"},{"relation_name":"is_a","term_name":"regulation of embryonic development","termid":"GO:0045995"},{"relation_name":"regulates","term_name":"gastrulation","termid":"GO:0007369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of gastrulation","termid":"GO:0010470"}


id: MOD:00948
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-dephospho","termid":"MOD:00948"}


id: PR:P41000
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cps3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P41000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein cps3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3A11.02","synonyms":[{"name":"Spom972h-cps3","type":"exact"},{"name":"meiotically up-regulated gene 188 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P41000"}


id: GO:0007615
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The memory process that results in the formation of consolidated memory resistant to disruption of the patterned activity of the brain, without requiring protein synthesis.","definition_xrefs":["PMID:15143285","PMID:17088531"],"direct_ancestors":[{"relation_name":"is_a","term_name":"memory","termid":"GO:0007613"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anesthesia-resistant memory","termid":"GO:0007615"}


id: PBO:0012241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial pyrimidine nucleotide transporter (predicted)","termid":"PBO:0012241"}


id: PBO:0058188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4481","termid":"PBO:0058188"}


id: GO:0080006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Determines the spacing between two shoot nodes. A shoot node is the region of the shoot where the spikelet, flower, floret, branch, bud and/or leaves are attached.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pattern specification process","termid":"GO:0007389"},{"relation_name":"part_of","term_name":"shoot system development","termid":"GO:0048367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"internode patterning","termid":"GO:0080006"}


id: RO:0002083
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"before_or_simultaneous_with","termid":"RO:0002081"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"before","termid":"RO:0002083"}


id: GO:0035869
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A region of the cilium between the basal body and proximal segment that is characterized by Y-shaped assemblages that connect axonemal microtubules to the ciliary membrane. The ciliary transition zone appears to function as a gate that controls ciliary membrane composition and separates the cytosol from the ciliary plasm.","definition_xrefs":["GOC:cilia","GOC:kmv","PMID:21422230"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cilium","termid":"GO:0005929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"ciliary transition zone","synonyms":[{"name":"cilial transition zone","type":"exact"},{"name":"cilium transition zone","type":"exact"},{"name":"connecting cilium","type":"related"}],"termid":"GO:0035869"}


id: PBO:0000626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium permease (predicted)","termid":"PBO:0000626"}


id: PBO:0113060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the EKC/KEOPS complex; EKC/KEOPS complex is required for t6A tRNA modification and telomeric TG1-3 recombination; may have role in transcription; Cgi121p is dispensable for tRNA modification; other complex members are Bud32p, Kae1p, Pcc1p, and Gon7p; ortholog of human TPRKB","termid":"PBO:0113060"}


id: PBO:0038953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adiponectin receptor 1","termid":"PBO:0038953"}


id: FYPO:0005438
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of DNA/DNA annealing activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA binding","termid":"FYPO:0000656"},{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000653"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000653","FYPO:0000661","FYPO:0000654","FYPO:0000707"],"is_obsolete":false,"name":"abnormal DNA/DNA annealing activity","termid":"FYPO:0005438"}


id: PBO:0089698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRO1 domain protein Bro1","termid":"PBO:0089698"}


id: PBO:0062528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily U member 8","termid":"PBO:0062528"}


id: PBO:0061852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactomedin 2","termid":"PBO:0061852"}


id: PBO:0030945
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_linear_element_assembly","termid":"PBO:0030945"}


id: PBO:0053782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1033","termid":"PBO:0053782"}


id: PBO:0043984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colony stimulating factor 1 receptor","termid":"PBO:0043984"}


id: PBO:0075031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 115-42","termid":"PBO:0075031"}


id: PBO:0069591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 865, pseudogene","termid":"PBO:0069591"}


id: PBO:0077940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon AGC) 1-1","termid":"PBO:0077940"}


id: FYPO:0008087
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which autophagic degradation of the nucleus during nitrogen starvation is decreased.","definition_xrefs":["PMID:37191320"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nucleophagy","termid":"FYPO:0008085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased nucleophagy during nitrogen starvation","termid":"FYPO:0008087"}


id: GO:0102870
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: UDP-alpha-D-glucose + 7-hydroxyflavone = 7-O-beta-D-glucosyl-7-hydroxyflavone + UDP + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 7-hydroxyflavone-glucosyltransferase activity (obsolete GO:0102870)","termid":"GO:0102870"}


id: GO:0016916
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Either of two glycoproteins (designated A and B), secreted by the gonads and present in seminal plasma and follicular fluid, that inhibit pituitary production of follicle-stimulating hormone.","definition_xrefs":["ISBN:0198506732","ISBN:0721662544"],"gene_count":0,"genotype_count":0,"name":"obsolete inhibin (obsolete GO:0016916)","synonyms":[{"name":"inhibin","type":"exact"}],"termid":"GO:0016916"}


id: GO:0009447
data:
  {"annotated_genes":["SJAG_03288"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83488],"is_not":false,"summary":null,"term":"GO:0009447"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of putrescine, 1,4-diaminobutane; putrescine is the metabolic precursor of spermidine and spermine.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyamine catabolic process","termid":"GO:0006598"},{"relation_name":"is_a","term_name":"putrescine metabolic process","termid":"GO:0009445"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03288":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"putrescine catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"putrescine breakdown","type":"exact"},{"name":"putrescine catabolism","type":"exact"},{"name":"putrescine degradation","type":"exact"}],"termid":"GO:0009447","terms_by_termid":{"GO:0009447":null}}


id: PBO:0046261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein complex subunit 1","termid":"PBO:0046261"}


id: PBO:0047075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 133 member D, pseudogene","termid":"PBO:0047075"}


id: PBO:0033822
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HemeRYthrin-like domain","termid":"PBO:0033822"}


id: PBO:0017059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mug2/mug135/meu2 family, with repeat expansion","termid":"PBO:0017059"}


id: GO:1902876
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of embryonic pattern specification.","definition_xrefs":["GOC:mr","GO_REF:0000058","GOC:TermGenie","PMID:16872597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of embryonic pattern specification","termid":"GO:1902875"},{"relation_name":"negatively_regulates","term_name":"embryonic pattern specification","termid":"GO:0009880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of embryonic pattern specification","synonyms":[{"name":"down regulation of embryonic pattern specification","type":"exact"},{"name":"down regulation of ventral/lateral system","type":"related"},{"name":"down-regulation of embryonic pattern specification","type":"exact"},{"name":"down-regulation of ventral/lateral system","type":"related"},{"name":"downregulation of embryonic pattern specification","type":"exact"},{"name":"downregulation of ventral/lateral system","type":"related"},{"name":"inhibition of embryonic pattern specification","type":"narrow"},{"name":"inhibition of ventral/lateral system","type":"related"},{"name":"negative regulation of ventral/lateral system","type":"related"}],"termid":"GO:1902876"}


id: PBO:0002974
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"K(m)=63 microM","termid":"PBO:0002974"}


id: GO:0048083
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of establishment of the adult pattern of pigmentation in the cuticle of an organism.","definition_xrefs":["GOC:jid","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of chitin-based cuticle tanning","termid":"GO:0045800"},{"relation_name":"is_a","term_name":"negative regulation of cuticle pigmentation","termid":"GO:0048080"},{"relation_name":"is_a","term_name":"regulation of adult chitin-containing cuticle pigmentation","termid":"GO:0048082"},{"relation_name":"negatively_regulates","term_name":"adult chitin-containing cuticle pigmentation","termid":"GO:0048085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of adult chitin-containing cuticle pigmentation","synonyms":[{"name":"down regulation of adult chitin-containing cuticle pigmentation","type":"exact"},{"name":"down-regulation of adult chitin-containing cuticle pigmentation","type":"exact"},{"name":"downregulation of adult chitin-containing cuticle pigmentation","type":"exact"},{"name":"inhibition of adult chitin-containing cuticle pigmentation","type":"narrow"}],"termid":"GO:0048083"}


id: PR:Q10221
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rng8 gene.","definition_xrefs":["UniProtKB:Q10221","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C4H3.14c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4H3.14c","synonyms":[{"name":"Spom972h-rng8","type":"exact"}],"termid":"PR:Q10221"}


id: PBO:0003085
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae cdc13-1","termid":"PBO:0003085"}


id: PBO:0075391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sp4 transcription factor","termid":"PBO:0075391"}


id: PBO:0054754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2165","termid":"PBO:0054754"}


id: GO:0072427
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of events in which information about damage to DNA is received and converted into a molecular signal, contributing to an intra-S DNA damage checkpoint.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete detection of DNA damage stimulus involved in intra-S DNA damage checkpoint (obsolete GO:0072427)","synonyms":[{"name":"intra-S DNA damage checkpoint sensor mechanism","type":"related"},{"name":"intra-S DNA damage checkpoint sensor process","type":"related"},{"name":"sensing involved in intra-S DNA damage checkpoint","type":"related"}],"termid":"GO:0072427"}


id: PBO:0028742
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_cycle_arrest_in_mitotic_prophase","termid":"PBO:0028742"}


id: GO:0008427
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of a calcium-dependent protein kinase.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium-dependent protein kinase regulator activity","termid":"GO:0010858"},{"relation_name":"is_a","term_name":"protein serine/threonine kinase inhibitor activity","termid":"GO:0030291"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0140678","GO:0098772","GO:0030234","GO:0004857"],"is_obsolete":false,"name":"calcium-dependent protein kinase inhibitor activity","termid":"GO:0008427"}


id: PBO:0080561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WBP11 pseudogene 1","termid":"PBO:0080561"}


id: PBO:0081096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger DHHC-type palmitoyltransferase 21","termid":"PBO:0081096"}


id: PBO:0067008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 15, pseudogene","termid":"PBO:0067008"}


id: PBO:0087144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding subunit of Nrd1 complex; complex interacts with exosome to mediate 3'-end formation of some mRNAs, snRNAs, snoRNAs, and CUTs; interacts with CTD of RNA pol II large subunit Rpo21p at phosphorylated Ser5 to direct transcription termination of non-polyadenylated transcripts; H3K4 trimethylation of transcribed regions by Set1p enhances recruitment of Nrd1p to those sites; role in regulation of mitochondrial abundance and cell size","termid":"PBO:0087144"}


id: PBO:0072856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"store-operated calcium entry associated regulatory factor","termid":"PBO:0072856"}


id: PBO:0041945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromobox 5 pseudogene 1","termid":"PBO:0041945"}


id: GO:0052519
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism activates, maintains or increases the frequency, rate or extent of the release of nutrients from a symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of nutrient release by symbiont","termid":"GO:0052460"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of nutrient release by symbiont","synonyms":[{"name":"activation by host of nutrient release from symbiont","type":"narrow"},{"name":"positive regulation by host of nutrient release from symbiont","type":"exact"},{"name":"promotion of nutrient release from symbiont","type":"exact"},{"name":"stimulation by host of nutrient release from symbiont","type":"narrow"},{"name":"up regulation by host of nutrient release from symbiont","type":"exact"},{"name":"up-regulation by host of nutrient release from symbiont","type":"exact"},{"name":"upregulation by host of nutrient release from symbiont","type":"exact"}],"termid":"GO:0052519"}


id: PBO:0059289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L42 pseudogene 4","termid":"PBO:0059289"}


id: PBO:0012555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"origin recognition complex subunit Orp3","termid":"PBO:0012555"}


id: FYPO:0004682
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of polyadenylated 5S rRNA measured in a cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal rRNA or precursor level","termid":"FYPO:0006000"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal polyadenylated 5S rRNA level","synonyms":[{"name":"normal polyadenylated 5S rRNA accumulation","type":"related"},{"name":"normal polyadenylated 5S rRNA level during mitotic cell cycle","type":"related"},{"name":"normal polyadenylated 5S rRNA level during vegetative growth","type":"exact"},{"name":"normal polyadenylated 5S rRNA transcript level","type":"exact"}],"termid":"FYPO:0004682"}


id: PBO:0050021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class II, DP alpha 2 (pseudogene)","termid":"PBO:0050021"}


id: SO:0000621
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"This type of promoter recruits RNA pol III to transcribe predominantly noncoding RNAs. This promoter contains a proximal sequence element (PSE) and a TATA box upstream of the gene that it regulates. Transcription can also be activated by a distal sequence element (DSE), which is located further upstream. ","definition_xrefs":["PMID:12381659"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNApol_III_promoter","termid":"SO:0000171"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNApol_III_promoter_type_3","synonyms":[{"name":"RNApol III promoter type 3","type":"exact"}],"termid":"SO:0000621"}


id: PBO:0030620
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_alpha-glucosidase_activity","termid":"PBO:0030620"}


id: PBO:0048068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin heavy chain 1 pseudogene 19","termid":"PBO:0048068"}


id: GO:0019698
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of D-galacturonate, the D-enantiomer of galacturonate, the anion of galacturonic acid.","definition_xrefs":["GOC:ai","GOC:mah","GOC:jsg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monosaccharide catabolic process","termid":"GO:0046365"},{"relation_name":"is_a","term_name":"D-galacturonate metabolic process","termid":"GO:0046396"},{"relation_name":"is_a","term_name":"galacturonate catabolic process","termid":"GO:0046397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0005975","GO:0044248","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"D-galacturonate catabolic process","secondary_identifiers":["MetaCyc:GALACTUROCAT-PWY"],"synonyms":[{"name":"D-galacturonate breakdown","type":"exact"},{"name":"D-galacturonate catabolism","type":"exact"},{"name":"D-galacturonate degradation","type":"exact"}],"termid":"GO:0019698"}


id: GO:0075720
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process by which a virus establishes a latent state within its host as an episome, where the viral genome remains silent in the cytoplasm or nucleus as a distinct genetic entity.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of viral latency","termid":"GO:0019043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"establishment of episomal latency","synonyms":[{"name":"establishment as a plasmid prophage","type":"narrow"},{"name":"establishment of plasmid latency","type":"exact"}],"termid":"GO:0075720"}


id: GO:0043662
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The soluble material inside the peribacteroid membrane, but outside of the bacteroid, within a bacteroid-containing symbiosome.","definition_xrefs":["GOC:cc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"bacteroid-containing symbiosome","termid":"GO:0043660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0031410","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"peribacteroid fluid","termid":"GO:0043662"}


id: PBO:0041755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclase associated actin cytoskeleton regulatory protein 1","termid":"PBO:0041755"}


id: MOD:01629
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that forms cyclo[(prolylserin)-O-yl] cysteinate by the natural process of cross-linking an L-cysteine residue an L-proline residue, and an L-serine residue, or by effectively modifying a cysteine residue.","definition_xrefs":["RESID:AA0489","PubMed:7961166"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclo[(prolylserin)-O-yl] cysteinate","synonyms":[{"name":"(3,6-dioxopyrrolo[4,5-a]piperazin-2-yl)methyl cysteinate","type":"exact"},{"name":"MOD_RES Cyclo[(prolylserin)-O-yl] cysteinate","type":"exact"},{"name":"[(3S,8aS)-1,4-dioxooctahydropyrrolo[1,2-a]pyrazin-3-yl]methyl (2R)-2-amino-3-sulfanylpropanoate","type":"exact"},{"name":"cyclo[(prolylserin)-O-yl] cysteinate","type":"exact"}],"termid":"MOD:01629"}


id: GO:0070742
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a C2H2-type zinc finger domain of a protein. The C2H2 zinc finger is the classical zinc finger domain, in which two conserved cysteines and histidines co-ordinate a zinc ion.","definition_xrefs":["Pfam:PF00096","GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"C2H2 zinc finger domain binding","termid":"GO:0070742"}


id: PBO:0048916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A8 family member K","termid":"PBO:0048916"}


id: PBO:0074390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small integral membrane protein 1 (Vel blood group)","termid":"PBO:0074390"}


id: GO:0006133
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. This term was not defined before being made obsolete.","definition_xrefs":["GOC:mtg_electron_transport"],"gene_count":0,"genotype_count":0,"name":"obsolete 5,10-methylenetetrahydrofolate oxidation (obsolete GO:0006133)","synonyms":[{"name":"5,10-methylenetetrahydrofolate oxidation","type":"exact"}],"termid":"GO:0006133"}


id: PBO:0071301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 24","termid":"PBO:0071301"}


id: PBO:0046990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 87 member B","termid":"PBO:0046990"}


id: GO:0031018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin.","definition_xrefs":["GOC:cvs"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"pancreas development","termid":"GO:0031016"},{"relation_name":"part_of","term_name":"endocrine system development","termid":"GO:0035270"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endocrine pancreas development","termid":"GO:0031018"}


id: PBO:0090948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-1,2-mannosyltransferase Omh6","termid":"PBO:0090948"}


id: PBO:0028586
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_actin_filament_bundle_assembly","termid":"PBO:0028586"}


id: PBO:0057016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 105-1","termid":"PBO:0057016"}


id: PBO:0034481
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_level_during_cellular_response_to_hydroxyurea","termid":"PBO:0034481"}


id: GO:0006363
data:
  {"annotated_genes":["SJAG_03689","SJAG_04106","SJAG_02922","SJAG_04855"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92425,98300,110219,111990],"is_not":false,"summary":null,"term":"GO:0006363"}]},"cv_name":"biological_process","definition":"A transcription termination process that completes the production of a ribosomal RNA transcript. RNAP I termination requires binding of a terminator protein to specific sequences downstream of the transcription unit.","definition_xrefs":["PMID:27371117","PMID:10684922","GOC:mah","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated transcription termination","termid":"GO:0006353"},{"relation_name":"part_of","term_name":"transcription by RNA polymerase I","termid":"GO:0006360"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02922":null,"SJAG_03689":null,"SJAG_04106":null,"SJAG_04855":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0008150","GO:0006351","GO:0010467"],"is_obsolete":false,"name":"termination of RNA polymerase I transcription","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0019223","GO:0001185"],"synonyms":[{"name":"RNA polymerase I transcription termination","type":"exact"},{"name":"RNA polymerase I transcription termination factor activity","type":"related"},{"name":"termination of RNA polymerase I transcription from promoter for nuclear large rRNA transcript","type":"narrow"},{"name":"transcription termination from Pol I promoter","type":"exact"},{"name":"transcription termination from RNA polymerase I promoter","type":"exact"}],"termid":"GO:0006363","terms_by_termid":{"GO:0006363":null}}


id: PBO:0067012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 20, pseudogene","termid":"PBO:0067012"}


id: GO:0036349
data:
  {"annotated_genes":["SJAG_00926"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99568],"is_not":false,"summary":null,"term":"GO:0036349"}]},"cv_name":"biological_process","definition":"The non-sexual aggregation of single-celled organisms mediated by the binding of cell wall proteins on one cell to galactose residues on the other.","definition_xrefs":["GOC:vw","PMID:22098069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flocculation","termid":"GO:0000128"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00926":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"galactose-specific flocculation","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0098611"],"synonyms":[{"name":"cell-cell adhesion involved in galactose-specific flocculation","type":"exact"}],"termid":"GO:0036349","terms_by_termid":{"GO:0036349":null}}


id: GO:0047134
data:
  {"annotated_genes":["SJAG_00489","SJAG_04399","SJAG_03653"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[102792],"is_not":false,"summary":null,"term":"GO:0047134"},{"annotations":[78096,106092],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004791"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: protein-dithiol + NAD(P)+ = protein-disulfide + NAD(P)H + H+.","definition_xrefs":["EC:1.8.1.8","MetaCyc:1.6.4.4-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-disulfide reductase activity","termid":"GO:0015035"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor","termid":"GO:0016668"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00489":null,"SJAG_03653":null,"SJAG_04399":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0015036"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0140096","GO:0003824","GO:0003674","GO:0015036","GO:0016491"],"is_obsolete":false,"name":"protein-disulfide reductase (NAD(P)H) activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"NAD(P)H:protein-disulfide oxidoreductase activity","type":"related"},{"name":"disulfide reductase activity","type":"related"},{"name":"insulin-glutathione transhydrogenase activity","type":"related"},{"name":"protein disulfide reductase (NAD(P)H) activity","type":"exact"},{"name":"protein disulfide reductase activity","type":"related"},{"name":"protein disulphide reductase activity","type":"related"},{"name":"protein-disulfide reductase (NAD(P)) activity","type":"exact"},{"name":"protein-disulfide reductase activity","type":"broad"},{"name":"protein-disulphide reductase activity","type":"broad"}],"termid":"GO:0047134","terms_by_termid":{"GO:0004791":null,"GO:0047134":null}}


id: GO:2001309
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of the epipolythiodioxopiperazine gliotoxin, a poisonous substance produced by some species of fungi.","definition_xrefs":["PMID:17574915","PMID:18272357","GOC:di","PMID:16333108"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mycotoxin catabolic process","termid":"GO:0043387"},{"relation_name":"is_a","term_name":"sulfur compound catabolic process","termid":"GO:0044273"},{"relation_name":"is_a","term_name":"detoxification of nitrogen compound","termid":"GO:0051410"},{"relation_name":"is_a","term_name":"gliotoxin metabolic process","termid":"GO:2001308"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0098754"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006790","GO:0008150","GO:0044248","GO:0098754","GO:0019748"],"is_obsolete":false,"name":"gliotoxin catabolic process","synonyms":[{"name":"gliotoxin breakdown","type":"exact"},{"name":"gliotoxin catabolism","type":"exact"},{"name":"gliotoxin degradation","type":"exact"}],"termid":"GO:2001309"}


id: GO:0097371
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a member of the MDM2/MDM4 protein family, comprising negative regulators of p53.","definition_xrefs":["InterPro:IPR016495"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"MDM2/MDM4 family protein binding","termid":"GO:0097371"}


id: PBO:0061037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIP7 pseudogene 3","termid":"PBO:0061037"}


id: GO:0008688
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-(3-hydroxyphenyl)propionate + NADH + oxygen + H+ = 3-(2,3-dihydroxyphenyl)propionate + NAD+ + H2O.","definition_xrefs":["RHEA:24785"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"3-(3-hydroxyphenyl)propionate hydroxylase activity","secondary_identifiers":["EC:1.14.13.127","MetaCyc:MHPHYDROXY-RXN","KEGG_REACTION:R06786"],"termid":"GO:0008688"}


id: PBO:0018220
data:
  {"annotation_feature_type":"gene","cv_name":"feature_relationshipprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"expression","termid":"PBO:0018220"}


id: PR:O43068
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mde4 gene.","definition_xrefs":["UniProtKB:O43068","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monopolin complex subunit mde4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC6B1.04","synonyms":[{"name":"Spom972h-mde4","type":"exact"},{"name":"mei4-dependent protein 4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O43068"}


id: GO:0006098
data:
  {"annotated_genes":["SJAG_05314","SJAG_00501","SJAG_00070","SJAG_03934","SJAG_00633","SJAG_03852","SJAG_00685","SJAG_02148","SJAG_02696","SJAG_02297","SJAG_01824","SJAG_04263","SJAG_04334"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85009,92405,104425,109822],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0009052"},{"annotations":[94222,111332,114439,93024,92934,107582,90580],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0009051"},{"annotations":[85759],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905857"},{"annotations":[74924],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0043456"}]},"cv_name":"biological_process","definition":"The metabolic process in which glucose-6-phosphate is oxidized to form carbon dioxide (CO2) and ribulose 5-phosphate, coupled to reduction of NADP+ to NADPH; ribulose 5-P then enters a series of reactions that can yield biosynthetic precursors (ribose-5-phosphate and erythrose-4-phosphate) and glycolytic intermediates (fructose-6-phosphate and glyceraldehyde-3-phosphate).","definition_xrefs":["MetaCyc:PENTOSE-P-PWY","ISBN:0198506732","GOC:pde"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NADPH regeneration","termid":"GO:0006740"},{"relation_name":"is_a","term_name":"glucose 6-phosphate metabolic process","termid":"GO:0051156"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00070":null,"SJAG_00501":null,"SJAG_00633":null,"SJAG_00685":null,"SJAG_01824":null,"SJAG_02148":null,"SJAG_02297":null,"SJAG_02696":null,"SJAG_03852":null,"SJAG_03934":null,"SJAG_04263":null,"SJAG_04334":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281","GO:0006091"],"is_obsolete":false,"name":"pentose-phosphate shunt","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["KEGG_PATHWAY:map00030","Wikipedia:Pentose_phosphate_pathway"],"synonyms":[{"name":"pentose phosphate shunt","type":"exact"},{"name":"pentose-phosphate pathway","type":"exact"},{"name":"hexose monophosphate pathway","type":"exact"},{"name":"pentose phosphate pathway","type":"exact"}],"termid":"GO:0006098","terms_by_termid":{"GO:0009051":null,"GO:0009052":null,"GO:0043456":null,"GO:1905857":null}}


id: MOD:00969
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:346"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CAM-Cys vs PAM-Cys","termid":"MOD:00969"}


id: GO:0048654
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the anther are generated and organized.","definition_xrefs":["GOC:jid","GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"floral organ morphogenesis","termid":"GO:0048444"},{"relation_name":"part_of","term_name":"stamen morphogenesis","termid":"GO:0048448"},{"relation_name":"part_of","term_name":"anther development","termid":"GO:0048653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anther morphogenesis","termid":"GO:0048654"}


id: PBO:0074909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 80","termid":"PBO:0074909"}


id: PBO:0063877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class F pseudogene 3","termid":"PBO:0063877"}


id: PBO:0004579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA (guanine-N2-)-methyltransferase catalytic subunit Trm11 (predicted)","termid":"PBO:0004579"}


id: PBO:0060335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin VB","termid":"PBO:0060335"}


id: PBO:0029948
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_tyrosine_phosphorylation_during_cellular_response_to_osmotic_stress","termid":"PBO:0029948"}


id: PBO:0090694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial proton-transporting ATP synthase inhibitor Inh1","termid":"PBO:0090694"}


id: PBO:0075995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STEAP2 antisense RNA 1","termid":"PBO:0075995"}


id: GO:0019525
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving keto-D-gluconate, the anion of keto-D-gluconic acid, an aldonic acid derived from glucose.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ketogluconate metabolic process","termid":"GO:0019522"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"keto-D-gluconate metabolic process","synonyms":[{"name":"keto-D-gluconate metabolism","type":"exact"}],"termid":"GO:0019525"}


id: GO:0043012
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the binding and fusion of a sperm to the oocyte plasma membrane.","definition_xrefs":["GOC:jl","PMID:11483596"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"is_a","term_name":"regulation of plasma membrane organization","termid":"GO:1903729"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"fusion of sperm to egg plasma membrane involved in single fertilization","termid":"GO:0007342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"regulation of fusion of sperm to egg plasma membrane","synonyms":[{"name":"regulation of sperm-oocyte fusion","type":"narrow"}],"termid":"GO:0043012"}


id: PR:Q10358
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein RER1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10743:SF0","PRO:DNx","OMA:SCHPO02094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein rer1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22E12.05c","secondary_identifiers":["UniProtKB:Q10358"],"synonyms":[{"name":"Spom972h-RER1","type":"exact"},{"name":"retention of ER proteins 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10358"}


id: GO:0046570
data:
  {"annotated_genes":["SJAG_02689","SJAG_02293"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[88699,96679],"is_not":false,"summary":null,"term":"GO:0046570"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-methyl-5-thio-D-ribulose 1-phosphate = 5-(methylthio)-2,3-dioxopentyl phosphate + H2O.","definition_xrefs":["RHEA:15549","EC:4.2.1.109"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02293":null,"SJAG_02689":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"methylthioribulose 1-phosphate dehydratase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-1237140","GO:0043809","MetaCyc:R145-RXN","KEGG_REACTION:R07392"],"synonyms":[{"name":"1-PMT-ribulose dehydratase activity","type":"related"},{"name":"5-methylthioribulose-1-phosphate 4-dehydratase activity","type":"exact"},{"name":"S-methyl-5-thio-D-ribulose-1-phosphate hydro-lyase [5-(methylthio)-2,3-dioxopentyl-phosphate-forming]","type":"related"},{"name":"S-methyl-5-thio-D-ribulose-1-phosphate hydro-lyase activity","type":"exact"},{"name":"S-methyl-5-thio-D-ribulose-1-phosphate hydro-lyase[5-(methylthio)-2,3-dioxopentyl-phosphate-forming]","type":"exact"},{"name":"methylthioribulose-1-phosphate dehydratase activity","type":"exact"}],"termid":"GO:0046570","terms_by_termid":{"GO:0046570":null}}


id: PR:Q10076
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hsr1 gene.","definition_xrefs":["UniProtKB:Q10076","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrogen peroxide stress regulator 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H1.11","synonyms":[{"name":"Spom972h-hsr1","type":"exact"}],"termid":"PR:Q10076"}


id: PR:Q9UT28
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nnt1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UT28"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein N-methyltransferase nnt1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC8F11.09c","synonyms":[{"name":"Spom972h-nnt1","type":"exact"},{"name":"nicotinamide N-methyltransferase-like protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UT28"}


id: GO:0009641
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Shade avoidance is a set of responses that plants display when they are subjected to the shade of another plant. It often includes elongation, altered flowering time, increased apical dominance and altered partitioning of resources. Plants are able to distinguish between the shade of an inanimate object (e.g. a rock) and the shade of another plant due to the altered balance between red and far-red light in the shade of a plant; this balance between red and far-red light is perceived by phytochrome.","definition_xrefs":["Wikipedia:Shade_avoidance"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to red or far red light","termid":"GO:0009639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"shade avoidance","termid":"GO:0009641"}


id: PBO:0069544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 815, pseudogene","termid":"PBO:0069544"}


id: FYECO:0000331
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in medium containing glucose, salts, water and with arginine as the nitrogen source.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose MM, arginine nitrogen source","synonyms":[{"name":"glucose minimal medium, arginine nitrogen source","type":"exact"}],"termid":"FYECO:0000331"}


id: PBO:0049253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRTP1 antisense RNA 1","termid":"PBO:0049253"}


id: PBO:0086751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; predicted to have a role in cell budding based on computational 'guilt by association' analysis","termid":"PBO:0086751"}


id: PBO:0088598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell septum surface endo-1,3-beta-glucanase Eng1","termid":"PBO:0088598"}


id: PBO:0060529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetyltransferase 2","termid":"PBO:0060529"}


id: GO:0016231
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-glucosamine residues in N-acetyl-beta-D-glucosaminides.","definition_xrefs":["EC:3.2.1.52"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-N-acetylhexosaminidase activity","termid":"GO:0004563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0016798","GO:0003824"],"is_obsolete":false,"name":"beta-N-acetylglucosaminidase activity","termid":"GO:0016231"}


id: GO:0071132
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphaX-beta2 integrin complex bound to intercellular adhesion molecule 4.","definition_xrefs":["PMID:16985175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"alphaX-beta2 integrin-ICAM-4 complex","synonyms":[{"name":"ITGAX-ITGB2-ICAM4 complex","type":"narrow"}],"termid":"GO:0071132"}


id: PBO:0076355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptotagmin like 2","termid":"PBO:0076355"}


id: PBO:0067130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 177, pseudogene","termid":"PBO:0067130"}


id: PBO:0075986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STAU2 antisense RNA 1","termid":"PBO:0075986"}


id: GO:0002503
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The binding of a peptide to the antigen binding groove of an MHC class II protein complex.","definition_xrefs":["PMID:15771591","GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide antigen assembly with MHC protein complex","termid":"GO:0002501"},{"relation_name":"part_of","term_name":"MHC class II protein complex assembly","termid":"GO:0002399"},{"relation_name":"part_of","term_name":"antigen processing and presentation of peptide antigen via MHC class II","termid":"GO:0002495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"peptide antigen assembly with MHC class II protein complex","termid":"GO:0002503"}


id: GO:2001249
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of ammonia assimilation cycle.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of nitrogen utilization","termid":"GO:0045847"},{"relation_name":"is_a","term_name":"negative regulation of glutamate metabolic process","termid":"GO:2000212"},{"relation_name":"is_a","term_name":"regulation of ammonia assimilation cycle","termid":"GO:2001248"},{"relation_name":"negatively_regulates","term_name":"ammonia assimilation cycle","termid":"GO:0019676"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006520"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"negative regulation of ammonia assimilation cycle","synonyms":[{"name":"negative regulation of glutamate metabolic process via glutamine and ammonia","type":"exact"},{"name":"negative regulation of glutamate metabolism via glutamine and ammonia","type":"exact"}],"termid":"GO:2001249"}


id: GO:0000416
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 36 of histone H3.","definition_xrefs":["GOC:krc"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of histone H3-K36 methylation (obsolete GO:0000416)","synonyms":[{"name":"activation of histone H3-K36 methylation","type":"narrow"},{"name":"stimulation of histone H3-K36 methylation","type":"narrow"},{"name":"up regulation of histone H3-K36 methylation","type":"exact"},{"name":"up-regulation of histone H3-K36 methylation","type":"exact"},{"name":"upregulation of histone H3-K36 methylation","type":"exact"}],"termid":"GO:0000416"}


id: GO:0047561
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-hydroxyanthranilate + O2 = 6-imino-5-oxocyclohexa-1,3-dienecarboxylate + H2O2.","definition_xrefs":["RHEA:17245","EC:1.10.3.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor","termid":"GO:0016682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"3-hydroxyanthranilate oxidase activity","secondary_identifiers":["KEGG_REACTION:R02666","MetaCyc:3-HYDROXYANTHRANILATE-OXIDASE-RXN"],"synonyms":[{"name":"3-hydroxyanthranilate:oxygen oxidoreductase activity","type":"related"},{"name":"3-hydroxyanthranilic acid oxidase activity","type":"related"}],"termid":"GO:0047561"}


id: GO:0034282
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ent-copalyl diphosphate = ent-pimara-8(14),15-diene + diphosphate.","definition_xrefs":["RHEA:25540"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"ent-pimara-8(14),15-diene synthase activity","secondary_identifiers":["KEGG_REACTION:R09121","MetaCyc:RXN-7788","EC:4.2.3.30"],"synonyms":[{"name":"ent-copalyl-diphosphate diphosphate-lyase [ent-pimara-8(14),15-diene-forming] activity","type":"exact"},{"name":"ent-pimaradiene synthase activity","type":"broad"}],"termid":"GO:0034282"}


id: PBO:0042218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin P","termid":"PBO:0042218"}


id: GO:0019491
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ectoine (1,4,5,6-tetrahydro-2-methyl-4-pyrimidinecarboxylic acid), a tetrahydropyrimidine commonly synthesized by halophilic bacteria.","definition_xrefs":["PMID:11823218","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ectoine metabolic process","termid":"GO:0042399"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"ectoine biosynthetic process","secondary_identifiers":["MetaCyc:P101-PWY"],"synonyms":[{"name":"ectoine anabolism","type":"exact"},{"name":"ectoine biosynthesis","type":"exact"},{"name":"ectoine formation","type":"exact"},{"name":"ectoine synthesis","type":"exact"}],"termid":"GO:0019491"}


id: PBO:0035828
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_eMTOC","termid":"PBO:0035828"}


id: GO:0030156
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a peripheral benzodiazepine receptor (PBR).","definition_xrefs":["PMID:9915832","GOC:ceb","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"benzodiazepine receptor binding","synonyms":[{"name":"benzodiazepine receptor ligand","type":"narrow"},{"name":"diazepam binding inhibitor activity","type":"related"}],"termid":"GO:0030156"}


id: PBO:0090720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic ATP-dependent RNA helicase Dbp5","termid":"PBO:0090720"}


id: SO:1000150
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosomal translocation whereby three breaks occurred in three different chromosomes. The centric segment resulting from the first break listed is joined to the acentric segment resulting from the second, rather than the third.","definition_xrefs":["FB:reference_manual"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interchromosomal_translocation","termid":"SO:0002060"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclic_translocation","synonyms":[{"name":"cyclic translocation","type":"exact"}],"termid":"SO:1000150"}


id: GO:0030083
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A pigment protein complex that forms part of the photosystem I associated light-harvesting complex I; contains two proteins (usually about 24 and 21.5 kDa); has a fluorescence maximum between 680 and 690 nm.","definition_xrefs":["PMID:8825475"],"direct_ancestors":[{"relation_name":"is_a","term_name":"PSI associated light-harvesting complex I","termid":"GO:0009518"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"PSI associated light-harvesting complex I, LHCIa subcomplex","termid":"GO:0030083"}


id: GO:0018351
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The addition of an ester group to a cysteine residue in a protein.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-cysteine esterification (obsolete GO:0018351)","termid":"GO:0018351"}


id: GO:0002208
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The somatic process that results in the generation of sequence diversity of immunoglobulins after induction, and contributes to an immune response.","definition_xrefs":["PMID:14991701","GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"somatic diversification of immunoglobulins","termid":"GO:0016445"},{"relation_name":"part_of","term_name":"immunoglobulin production involved in immunoglobulin-mediated immune response","termid":"GO:0002381"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"somatic diversification of immunoglobulins involved in immune response","synonyms":[{"name":"somatic diversification of antibodies during immune response","type":"related"},{"name":"somatic diversification of immunoglobulins during immune response","type":"related"}],"termid":"GO:0002208"}


id: GO:0035191
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The stepwise asymmetric spreading out of nuclei internally along the anterior-posterior axis of the developing insect embryo during mitotic cycles 4 to 6. This movement leads to the distribution of nuclei in a hollow ellipsoid underlying the cortex.","definition_xrefs":["PMID:8314839"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syncytial nuclear migration","termid":"GO:0035190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"nuclear axial expansion","synonyms":[{"name":"nuclear distribution along anterior-posterior axis","type":"exact"},{"name":"nucleus distribution along anterior-posterior axis","type":"exact"}],"termid":"GO:0035191"}


id: PBO:0075058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-21","termid":"PBO:0075058"}


id: MOD:00742
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a copper atom or a cluster containing copper for hydrogen atoms, or that coordinates a copper ion.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal or metal cluster containing modified residue","termid":"MOD:00698"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copper containing modified residue","synonyms":[{"name":"CuRes","type":"exact"}],"termid":"MOD:00742"}


id: PBO:0078604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 60 pseudogene 17","termid":"PBO:0078604"}


id: PBO:0068343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 114","termid":"PBO:0068343"}


id: PBO:0089076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein Rcl1","termid":"PBO:0089076"}


id: GO:0071796
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a protein upon poly-ubiquitination formed by linkages between lysine residues at position 6 in the target protein.","definition_xrefs":["GOC:sp","PMID:20351172","PMID:17525341"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyubiquitin modification-dependent protein binding","termid":"GO:0031593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"K6-linked polyubiquitin modification-dependent protein binding","termid":"GO:0071796"}


id: PBO:0056373
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase 8 interacting protein 1 pseudogene 1","termid":"PBO:0056373"}


id: PBO:0031901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRIP domain protein Grp2 (predicted)","termid":"PBO:0031901"}


id: FYPO:0005754
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of (1->3)-alpha-D-glucan measured in the periplasmic space is greater than normal.","definition_xrefs":["PMID:11514435","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased polysaccharide level during vegetative growth","termid":"FYPO:0001083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased (1->3)-alpha-D-glucan level in periplasmic space","synonyms":[{"name":"increased (1,3)alpha-D-glucan level in periplasmic space","type":"exact"},{"name":"increased (1->3)-alpha-D-glucan accumulation in periplasmic space","type":"related"},{"name":"increased (1->3)-alpha-D-glucan level in periplasmic space during mitotic cell cycle","type":"related"},{"name":"increased (1->3)-alpha-D-glucan level in periplasmic space during vegetative growth","type":"exact"},{"name":"increased 1,3-alpha-D-glucan level in periplasmic space","type":"exact"},{"name":"increased level of (1->3)-alpha-D-glucan in periplasmic space","type":"exact"}],"termid":"FYPO:0005754"}


id: FYPO:0007431
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which mutations occur at a higher or lower rate than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vegetative cell phenotype","termid":"FYPO:0001320"},{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"altered mutation rate","synonyms":[{"name":"abnormal mutation rate","type":"exact"},{"name":"altered mutation rate during mitotic cell cycle","type":"related"},{"name":"altered mutation rate during vegetative growth","type":"exact"}],"termid":"FYPO:0007431"}


id: GO:1904974
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of heparanase activity.","definition_xrefs":["GO_REF:0000088","PMID:12927802","GOC:TermGenie","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"heparanase complex","synonyms":[{"name":"HEPS complex","type":"exact"}],"termid":"GO:1904974"}


id: GO:0075169
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont organism activates, maintains or increases the frequency, rate or extent of its protein kinase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of symbiont protein kinase-mediated signal transduction in response to host (obsolete GO:0075169)","termid":"GO:0075169"}


id: PBO:0027290
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_glutathione_peroxidase_activity","termid":"PBO:0027290"}


id: PBO:0046105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4B pseudogene 8","termid":"PBO:0046105"}


id: GO:0010143
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cutin, a waxy substance, which combined with cellulose forms a substance nearly impervious to water and constituting the cuticle in plants.","definition_xrefs":["ISBN:0028623819"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macromolecule biosynthetic process","termid":"GO:0009059"},{"relation_name":"part_of","term_name":"cutin-based cuticle development","termid":"GO:0160062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cutin biosynthetic process","secondary_identifiers":["MetaCyc:PWY-321"],"synonyms":[{"name":"cutin anabolism","type":"exact"},{"name":"cutin biosynthesis","type":"exact"},{"name":"cutin formation","type":"exact"},{"name":"cutin synthesis","type":"exact"}],"termid":"GO:0010143"}


id: PBO:0081869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 808","termid":"PBO:0081869"}


id: GO:0030078
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Light harvesting complex associated with the reaction complex of photosynthetic purple bacteria.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane light-harvesting complex","termid":"GO:0030077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0031410","GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"light-harvesting complex, core complex","termid":"GO:0030078"}


id: GO:0044532
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which an organism modulates the frequency, rate or extent of apoptosis in a second organism.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic process","termid":"GO:0042981"},{"relation_name":"is_a","term_name":"regulation of killing of cells of another organism","termid":"GO:0051709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation of apoptotic process in another organism","synonyms":[{"name":"modulation of apoptotic process in other organism","type":"exact"},{"name":"regulation of apoptotic process in other organism","type":"exact"}],"termid":"GO:0044532"}


id: PBO:0005378
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal protein, DUF2457 family","termid":"PBO:0005378"}


id: PBO:0086067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function that interacts with Ulp1p; a Ubl (ubiquitin-like protein)-specific protease for Smt3p protein conjugates","termid":"PBO:0086067"}


id: GO:0035989
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a tendon over time, from its formation to the mature structure. A tendon is a fibrous, strong, connective tissue that connects muscle to bone or integument and is capable of withstanding tension. Tendons and muscles work together to exert a pulling force.","definition_xrefs":["PMID:21412429","UBERON:0000043","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"connective tissue development","termid":"GO:0061448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tendon development","synonyms":[{"name":"sinew development","type":"related"}],"termid":"GO:0035989"}


id: PBO:0072138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 15","termid":"PBO:0072138"}


id: PBO:0018077
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human DCP1B","termid":"PBO:0018077"}


id: PBO:0113090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytosolic and mitochondrial glutathione oxidoreductase; converts oxidized glutathione to reduced glutathione; cytosolic Glr1p is the main determinant of the glutathione redox state of the mitochondrial intermembrane space; mitochondrial Glr1p has a role in resistance to hyperoxia; also detected in peroxisomes; protein abundance increases in response to DNA replication stress","termid":"PBO:0113090"}


id: PBO:0067879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 181","termid":"PBO:0067879"}


id: PBO:0039752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apolipoprotein O pseudogene 3","termid":"PBO:0039752"}


id: PR:Q9HE05
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ubiquitin conjugation factor E4 B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00878","PANTHER:PTHR13931:SF2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugation factor E4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC20H4.10","secondary_identifiers":["UniProtKB:Q9HE05"],"synonyms":[{"name":"Spom972h-UBE4B","type":"exact"},{"name":"UB fusion protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin fusion degradation protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9HE05"}


id: PBO:0042941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromatin assembly factor 1 subunit B","termid":"PBO:0042941"}


id: PBO:0028174
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_double-strand_break_repair_during_vegetative_growth","termid":"PBO:0028174"}


id: PBO:0077322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 60","termid":"PBO:0077322"}


id: FYPO:0004675
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing dimethyl sulfoxide.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000257","FYPO:0002057","FYPO:0002060","FYPO:0000139","FYPO:0002058"],"is_obsolete":false,"name":"normal growth on dimethyl sulfoxide","synonyms":[{"name":"normal cell population growth in presence of dimethyl sulfoxide","type":"exact"},{"name":"normal cell population growth on DMSO","type":"exact"},{"name":"normal cell population growth on dimethyl sulfoxide","type":"exact"},{"name":"normal cellular response to dimethyl sulfoxide","type":"related"},{"name":"normal growth on dimethyl sulphoxide","type":"exact"},{"name":"normal vegetative cell population growth on dimethyl sulfoxide","type":"exact"}],"termid":"FYPO:0004675"}


id: FYPO:0007880
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein degradation is normal (i.e. indistinguishable from wild type) during a cellular response to methyl methanesulfonate. Protein degradation, also known as protein catabolism, is any metabolic process that results in the destruction of the native, active configuration of a protein, with or without the hydrolysis of peptide bonds.","definition_xrefs":["PomBase:mah","GO:0030163","PMID:34608864"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein degradation during vegetative growth","termid":"FYPO:0002800"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal protein degradation during cellular response to methyl methanesulfonate","synonyms":[{"name":"normal protein breakdown during cellular response to methyl methanesulfonate","type":"exact"},{"name":"normal protein catabolic process during cellular response to methyl methanesulfonate","type":"exact"},{"name":"normal protein catabolism during cellular response to methyl methanesulfonate","type":"exact"},{"name":"normal protein degradation during cellular response to MMS","type":"exact"},{"name":"normal protein degradation during cellular response to methyl methanesulfonate during mitotic cell cycle","type":"related"},{"name":"normal protein degradation during cellular response to methyl methanesulfonate during vegetative growth","type":"exact"}],"termid":"FYPO:0007880"}


id: PBO:0088283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F1-FO ATP synthase delta subunit","termid":"PBO:0088283"}


id: GO:0043457
data:
  {"annotated_genes":["SJAG_00698","SJAG_02433","SJAG_01062","SJAG_02592"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105692,93660,90425,107886],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903715"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellular respiration, the enzymatic release of energy from organic compounds.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of generation of precursor metabolites and energy","termid":"GO:0043467"},{"relation_name":"regulates","term_name":"cellular respiration","termid":"GO:0045333"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00698":null,"SJAG_01062":null,"SJAG_02433":null,"SJAG_02592":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"regulation of cellular respiration","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0043457","terms_by_termid":{"GO:1903715":null}}


id: PBO:0076789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tectorin alpha","termid":"PBO:0076789"}


id: PBO:0028766
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_rate_of_homologous_chromosome_pairing_at_cis-acting_homologous_chromosome_pairing_region","termid":"PBO:0028766"}


id: PBO:0027480
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_dense_body_present_in_nucleus_during_G0","termid":"PBO:0027480"}


id: PBO:0041760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capping actin protein, gelsolin like","termid":"PBO:0041760"}


id: GO:1901724
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell proliferation involved in kidney development.","definition_xrefs":["GOC:TermGenie","PMID:18182616"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"is_a","term_name":"regulation of cell proliferation involved in kidney development","termid":"GO:1901722"},{"relation_name":"positively_regulates","term_name":"cell proliferation involved in kidney development","termid":"GO:0072111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell proliferation involved in kidney development","synonyms":[{"name":"activation of cell proliferation involved in kidney development","type":"narrow"},{"name":"up regulation of cell proliferation involved in kidney development","type":"exact"},{"name":"up-regulation of cell proliferation involved in kidney development","type":"exact"},{"name":"upregulation of cell proliferation involved in kidney development","type":"exact"}],"termid":"GO:1901724"}


id: GO:0140794
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + histone 3 L-arginyl = histone 3 L-citrullyl + NH4+, resulting in histone citrullination.","definition_xrefs":["PMID:15339660"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-arginine deiminase activity","termid":"GO:0004668"},{"relation_name":"is_a","term_name":"histone modifying activity","termid":"GO:0140993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0140096","GO:0003674","GO:0003824","GO:0016810"],"is_obsolete":false,"name":"histone arginine deiminase activity","synonyms":[{"name":"histone citrullination","type":"related"},{"name":"histone-arginine deiminase activity","type":"exact"}],"termid":"GO:0140794"}


id: FYPO:0000390
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which traversing the start control point of the mitotic cell cycle begins earlier than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of mitotic cell cycle","termid":"FYPO:0000148"},{"relation_name":"is_a","term_name":"premature cell cycle phase transition","termid":"FYPO:0000827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000631","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"premature passage through START of mitotic cell cycle","synonyms":[{"name":"advanced passage through START of mitotic cell cycle","type":"exact"},{"name":"cell cycle passage through START: increased rate","type":"related"},{"name":"premature mitotic cell cycle passage through START","type":"exact"},{"name":"premature passage through START of mitotic cell cycle during vegetative growth","type":"exact"}],"termid":"FYPO:0000390"}


id: GO:1901303
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cargo loading into a COPII-coated vesicle.","definition_xrefs":["PMID:15899885","GOC:lb","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of intracellular transport","termid":"GO:0032387"},{"relation_name":"is_a","term_name":"regulation of cargo loading into COPII-coated vesicle","termid":"GO:1901301"},{"relation_name":"negatively_regulates","term_name":"COPII-coated vesicle cargo loading","termid":"GO:0090110"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of cargo loading into COPII-coated vesicle","synonyms":[{"name":"down regulation of COPII coat-cargo complex assembly","type":"related"},{"name":"down regulation of cargo loading into COPII vesicle","type":"exact"},{"name":"down regulation of cargo loading into COPII-coated vesicle","type":"exact"},{"name":"down regulation of cargo selection into COPII-coated vesicle","type":"exact"},{"name":"down-regulation of COPII coat-cargo complex assembly","type":"related"},{"name":"down-regulation of cargo loading into COPII vesicle","type":"exact"},{"name":"down-regulation of cargo loading into COPII-coated vesicle","type":"exact"},{"name":"down-regulation of cargo selection into COPII-coated vesicle","type":"exact"},{"name":"downregulation of COPII coat-cargo complex assembly","type":"related"},{"name":"downregulation of cargo loading into COPII vesicle","type":"exact"},{"name":"downregulation of cargo loading into COPII-coated vesicle","type":"exact"},{"name":"downregulation of cargo selection into COPII-coated vesicle","type":"exact"},{"name":"inhibition of COPII coat-cargo complex assembly","type":"related"},{"name":"inhibition of COPII vesicle protein binding","type":"narrow"},{"name":"inhibition of cargo loading into COPII vesicle","type":"exact"},{"name":"inhibition of cargo loading into COPII-coated vesicle","type":"narrow"},{"name":"inhibition of cargo selection into COPII-coated vesicle","type":"exact"},{"name":"inhibition of protein sorting into COPII-coated vesicles","type":"exact"},{"name":"negative regulation of COPII coat-cargo complex assembly","type":"related"},{"name":"negative regulation of cargo loading into COPII vesicle","type":"exact"},{"name":"negative regulation of cargo selection into COPII-coated vesicle","type":"exact"}],"termid":"GO:1901303"}


id: PBO:0073229
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO specific peptidase 2","termid":"PBO:0073229"}


id: GO:0031056
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the covalent alteration of a histone.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of histone modification (obsolete GO:0031056)","termid":"GO:0031056"}


id: FYPO:0007287
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the galactosylation of one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal. Protein galactosylation is the addition of a galactose residue to a protein amino acid.","definition_xrefs":["GO:0042125","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein glycosylation during vegetative growth","termid":"FYPO:0001911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002494","FYPO:0000002","FYPO:0001320","FYPO:0002274","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein galactosylation during vegetative growth","synonyms":[{"name":"decreased protein galactosylation during mitotic cell cycle","type":"related"},{"name":"reduced protein galactosylation during vegetative growth","type":"exact"}],"termid":"FYPO:0007287"}


id: PBO:0083369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps verified gene GAL11; deletion confers sensitivity to 4-(N-(S-glutathionylacetyl)amino) phenylarsenoxide (GSAO)","termid":"PBO:0083369"}


id: GO:0070233
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of T cell death by apoptotic process.","definition_xrefs":["ISBN:0781765196","GOC:mtg_apoptosis","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of lymphocyte apoptotic process","termid":"GO:0070229"},{"relation_name":"is_a","term_name":"regulation of T cell apoptotic process","termid":"GO:0070232"},{"relation_name":"negatively_regulates","term_name":"T cell apoptotic process","termid":"GO:0070231"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of T cell apoptotic process","synonyms":[{"name":"down-regulation of T cell apoptosis","type":"exact"},{"name":"down regulation of T cell apoptosis","type":"exact"},{"name":"downregulation of T cell apoptosis","type":"exact"},{"name":"inhibition of T cell apoptosis","type":"narrow"},{"name":"negative regulation of T cell apoptosis","type":"narrow"},{"name":"negative regulation of T lymphocyte apoptosis","type":"exact"},{"name":"negative regulation of T-cell apoptosis","type":"exact"},{"name":"negative regulation of T-lymphocyte apoptosis","type":"exact"},{"name":"negative regulation of programmed cell death of T cells by apoptosis","type":"exact"}],"termid":"GO:0070233"}


id: GO:0102740
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: theobromine + S-adenosyl-L-methionine = H+ + caffeine + S-adenosyl-L-homocysteine.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete theobromine:S-adenosyl-L-methionine 1-N-methyltransferase activity (obsolete GO:0102740)","termid":"GO:0102740"}


id: PBO:0070321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY3 pseudogene 10","termid":"PBO:0070321"}


id: MOD:00479
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-arginine residue to L-glutamyl semialdehyde.","definition_xrefs":["PubMed:9252331","PubMed:1680314","Unimod:344#R","PubMed:11120890","DeltaMass:351"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-arginine residue","termid":"MOD:00902"},{"relation_name":"is_a","term_name":"glutamyl semialdehyde","termid":"MOD:01440"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamyl semialdehyde (Arg)","synonyms":[{"name":"Arg->GluSA","type":"related"},{"name":"Arginine oxidation to glutamic semialdehyde","type":"related"},{"name":"Oxidation of arginine (to glutamic acid)","type":"exact"}],"termid":"MOD:00479"}


id: PBO:0048750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine-N-acyltransferase like 1 pseudogene 4","termid":"PBO:0048750"}


id: PBO:0050014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class I, B","termid":"PBO:0050014"}


id: PBO:0091586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rab GAP Tbc13","termid":"PBO:0091586"}


id: PBO:0044528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dishevelled binding antagonist of beta catenin 2","termid":"PBO:0044528"}


id: MOD:00977
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sodium containing modified residue","termid":"MOD:00747"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"disodium salt","termid":"MOD:00977"}


id: GO:2001091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a nigerotrioseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trisaccharide transport","termid":"GO:2001088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"nigerotriose transport","termid":"GO:2001091"}


id: PBO:0000682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial GTPase (predicted)","termid":"PBO:0000682"}


id: GO:2000181
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of blood vessel morphogenesis.","definition_xrefs":["GOC:yaf","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anatomical structure morphogenesis","termid":"GO:0022603"},{"relation_name":"is_a","term_name":"negative regulation of vasculature development","termid":"GO:1901343"},{"relation_name":"negatively_regulates","term_name":"blood vessel morphogenesis","termid":"GO:0048514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of blood vessel morphogenesis","termid":"GO:2000181"}


id: PBO:0057317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 518d","termid":"PBO:0057317"}


id: GO:0032723
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of connective tissue growth factor production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of connective tissue growth factor production","termid":"GO:0032643"},{"relation_name":"positively_regulates","term_name":"connective tissue growth factor production","termid":"GO:0032601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of connective tissue growth factor production","secondary_identifiers":["GO:0045422"],"synonyms":[{"name":"activation of connective tissue growth factor production","type":"narrow"},{"name":"positive regulation of CCN2 production","type":"exact"},{"name":"positive regulation of CTGF production","type":"exact"},{"name":"positive regulation of Fisp12 production","type":"exact"},{"name":"positive regulation of Hcs24 production","type":"exact"},{"name":"positive regulation of IGFBP8 production","type":"exact"},{"name":"positive regulation of connective tissue growth factor biosynthetic process","type":"narrow"},{"name":"positive regulation of hypertrophic chondrocyte-specific gene product 24 production","type":"exact"},{"name":"stimulation of connective tissue growth factor production","type":"narrow"},{"name":"up regulation of connective tissue growth factor production","type":"exact"},{"name":"up-regulation of connective tissue growth factor production","type":"exact"},{"name":"upregulation of connective tissue growth factor production","type":"exact"}],"termid":"GO:0032723"}


id: PBO:0063184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PBX homeobox 4","termid":"PBO:0063184"}


id: FYPO:0002370
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 56 of histone H3 in regions of the genome that are actively transcribed occurs to a greater extent than normal.","definition_xrefs":["PMID:23851719","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3 acetylation during vegetative growth","termid":"FYPO:0002363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001320","FYPO:0001985","FYPO:0002274","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased histone H3-K56 acetylation in transcribed regions during vegetative growth","synonyms":[{"name":"increased histone H3-K56 acetylation in transcribed regions during mitotic cell cycle","type":"related"},{"name":"increased histone H3K56 acetylation in transcribed regions during vegetative growth","type":"exact"}],"termid":"FYPO:0002370"}


id: PR:O13709
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC14C4.01c gene.","definition_xrefs":["UniProtKB:O13709","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C14C4.01c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC14C4.01c","synonyms":[{"name":"Spom972h-SPAC14C4.01c","type":"exact"}],"termid":"PR:O13709"}


id: GO:0061197
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the fungiform papilla are generated and organized. The fungiform papilla is a mushroom-shaped papilla of the tongue.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"tongue morphogenesis","termid":"GO:0043587"},{"relation_name":"part_of","term_name":"fungiform papilla development","termid":"GO:0061196"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fungiform papilla morphogenesis","termid":"GO:0061197"}


id: PBO:0074921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 90","termid":"PBO:0074921"}


id: GO:0007349
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The separation of a multi-nucleate cell or syncytium into individual cells. An example of this is found in Drosophila melanogaster embryo development.","definition_xrefs":["GOC:mtg_sensu","GOC:go_curators","ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"multicellular organism development","termid":"GO:0007275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellularization","secondary_identifiers":["GO:0009796"],"termid":"GO:0007349"}


id: GO:1990724
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A homodimeric protein complex that is capable of binding a range of carbohydrates and is involved in anti-inflammatory and pro-apoptotic processes.","definition_xrefs":["PMID:8262940","PMID:18777589","PMID:15476813","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein complex involved in cell-cell adhesion","termid":"GO:0098635"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"galectin complex","synonyms":[{"name":"galectin-1 complex","type":"narrow"},{"name":"galectin-2 complex","type":"narrow"}],"termid":"GO:1990724"}


id: PBO:0005329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"xrcc4 like factor, cernunnon","termid":"PBO:0005329"}


id: PBO:0085417
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane transporter of the major facilitator superfamily; involved in resistance to azole drugs such as ketoconazole and fluconazole","termid":"PBO:0085417"}


id: PR:Q10055
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A eukaryotic initiation factor 4A-III that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR24031:SF143","PRO:DNx","OMA:SCHPO00098"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase fal1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F5.10","secondary_identifiers":["UniProtKB:Q10055"],"synonyms":[{"name":"Spom972h-EIF4A3","type":"exact"}],"termid":"PR:Q10055"}


id: GO:1905025
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of membrane repolarization during ventricular cardiac muscle cell action potential.","definition_xrefs":["PMID:19893015","GOC:BHF","GOC:BHF_miRNA","GO_REF:0000058","GOC:mtg_cardiac_conduct_nov11","GOC:rph","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane repolarization during ventricular cardiac muscle cell action potential","termid":"GO:1905024"},{"relation_name":"is_a","term_name":"negative regulation of membrane repolarization during cardiac muscle cell action potential","termid":"GO:1905032"},{"relation_name":"negatively_regulates","term_name":"membrane repolarization during ventricular cardiac muscle cell action potential","termid":"GO:0098915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of membrane repolarization during ventricular cardiac muscle cell action potential","synonyms":[{"name":"down regulation of electrocardiogram T wave","type":"related"},{"name":"down regulation of membrane repolarization during ventricular cardiac muscle cell action potential","type":"exact"},{"name":"down regulation of regulation of ventricular cardiac muscle repolarization","type":"related"},{"name":"down regulation of ventricular repolarization","type":"related"},{"name":"down-regulation of electrocardiogram T wave","type":"related"},{"name":"down-regulation of membrane repolarization during ventricular cardiac muscle cell action potential","type":"exact"},{"name":"down-regulation of regulation of ventricular cardiac muscle repolarization","type":"related"},{"name":"down-regulation of ventricular repolarization","type":"related"},{"name":"downregulation of electrocardiogram T wave","type":"related"},{"name":"downregulation of membrane repolarization during ventricular cardiac muscle cell action potential","type":"exact"},{"name":"downregulation of regulation of ventricular cardiac muscle repolarization","type":"related"},{"name":"downregulation of ventricular repolarization","type":"related"},{"name":"inhibition of electrocardiogram T wave","type":"related"},{"name":"inhibition of membrane repolarization during ventricular cardiac muscle cell action potential","type":"narrow"},{"name":"inhibition of regulation of ventricular cardiac muscle repolarization","type":"related"},{"name":"inhibition of ventricular repolarization","type":"related"},{"name":"negative regulation of electrocardiogram T wave","type":"related"},{"name":"negative regulation of regulation of ventricular cardiac muscle repolarization","type":"related"},{"name":"negative regulation of ventricular repolarization","type":"related"}],"termid":"GO:1905025"}


id: GO:0044221
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The junction between a nerve fiber of one host neuron and another host neuron or muscle fiber or glial cell; the site of interneuronal communication.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell synapse","termid":"GO:0044221"}


id: GO:0032866
data:
  {"annotated_genes":["SJAG_04660","SJAG_03958"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91798,97203],"is_not":false,"summary":null,"term":"GO:0032866"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-xylitol + NADP+ = D-xylose + NADPH + H+.","definition_xrefs":["PMID:12724380","PMID:15184173","RHEA:27445"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldose reductase (NADPH) activity","termid":"GO:0004032"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03958":null,"SJAG_04660":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"D-xylose reductase (NADPH) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN-8773"],"synonyms":[{"name":"D-xylose reductase activity","type":"broad"},{"name":"D-xylose:NADP reductase activity","type":"exact"},{"name":"xylose reductase activity","type":"broad"}],"termid":"GO:0032866","terms_by_termid":{"GO:0032866":null}}


id: PBO:0066169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBIS pseudogene 2","termid":"PBO:0066169"}


id: GO:0004326
data:
  {"annotated_genes":["SJAG_00529","SJAG_03224"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[88983,100753],"is_not":false,"summary":null,"term":"GO:0004326"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + tetrahydrofolyl-(Glu)(n) + L-glutamate = ADP + phosphate + tetrahydrofolyl-(Glu)(n+1).","definition_xrefs":["EC:6.3.2.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00529":null,"SJAG_03224":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016874"],"is_obsolete":false,"name":"tetrahydrofolylpolyglutamate synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-200681","Reactome:R-HSA-200682","Reactome:R-HSA-197958","RHEA:10580","MetaCyc:FOLYLPOLYGLUTAMATESYNTH-RXN"],"synonyms":[{"name":"FPGS activity","type":"related"},{"name":"N(10)-formyltetrahydropteroyldiglutamate synthetase activity","type":"related"},{"name":"N10-formyltetrahydropteroyldiglutamate synthetase activity","type":"related"},{"name":"folate polyglutamate synthetase activity","type":"related"},{"name":"folylpoly(gamma-glutamate) synthase activity","type":"related"},{"name":"folylpoly-gamma-glutamate synthase activity","type":"related"},{"name":"folylpoly-gamma-glutamate synthetase-dihydrofolate synthetase activity","type":"related"},{"name":"folylpolyglutamate synthase activity","type":"exact"},{"name":"folylpolyglutamate synthetase activity","type":"related"},{"name":"folylpolyglutamyl synthetase activity","type":"related"},{"name":"formyltetrahydropteroyldiglutamate synthetase activity","type":"related"},{"name":"tetrahydrofolate synthase activity","type":"related"},{"name":"tetrahydrofolate:L-glutamate gamma-ligase (ADP-forming) activity","type":"related"},{"name":"tetrahydrofolyl-[gamma-Glu]n:L-glutamate gamma-ligase (ADP-forming)","type":"related"},{"name":"tetrahydropteroyl-[gamma-polyglutamate]:L-glutamate gamma-ligase (ADP-forming)","type":"related"}],"termid":"GO:0004326","terms_by_termid":{"GO:0004326":null}}


id: PBO:0090687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase III complex subunit Rpc53","termid":"PBO:0090687"}


id: GO:0141178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process by which a symbiont avoids the effects of recognition by host  complement by altering molecules on the symbiont surface. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:22825444","PMID:34887398","PMID:25537831"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated evasion of recognition by host innate immune effector","termid":"GO:0141177"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated evasion of recognition by host complement","synonyms":[{"name":"symbiont-mediated evasion of host complement","type":"exact"}],"termid":"GO:0141178"}


id: GO:0006926
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any apoptotic process in a cell infected with a virus.","definition_xrefs":["GOC:mtg_apoptosis","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete virus-infected cell apoptotic process (obsolete GO:0006926)","synonyms":[{"name":"apoptosis of virus-infected cells","type":"exact"},{"name":"killing virus-infected cells","type":"exact"},{"name":"programmed cell death of virus-infected cells by apoptosis","type":"exact"},{"name":"programmed cell death, virus-infected cells","type":"exact"},{"name":"virus-infected cell apoptosis","type":"narrow"},{"name":"virus-infected cell apoptotic process","type":"exact"},{"name":"virus-infected cell programmed cell death by apoptosis","type":"exact"}],"termid":"GO:0006926"}


id: GO:0072236
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the metanephric loop of Henle over time, from its formation to the mature structure. The metanephric loop of Henle is a metanephric nephron tubule that connects the proximal convoluted tubule to the distal convoluted tubule in the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"loop of Henle development","termid":"GO:0072070"},{"relation_name":"is_a","term_name":"metanephric nephron tubule development","termid":"GO:0072234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric loop of Henle development","synonyms":[{"name":"metanephric intermediate tubule development","type":"exact"}],"termid":"GO:0072236"}


id: PATO:0002362
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A tendency which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"},{"relation_name":"is_a","term_name":"tendency","termid":"PATO:0002360"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased tendency","termid":"PATO:0002362"}


id: MOD:01706
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with an isotope tagged reagent acyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acylated residue","termid":"MOD:00670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"isotope tagged reagent N-acylated residue","termid":"MOD:01706"}


id: PBO:0038731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin gamma 2, smooth muscle","termid":"PBO:0038731"}


id: PR:O74471
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cox13 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74471"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6A, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1739.09c","synonyms":[{"name":"Spom972h-cox13","type":"exact"},{"name":"cytochrome c oxidase polypeptide VIa (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74471"}


id: PBO:0041825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteinyl-tRNA synthetase 1 pseudogene 1","termid":"PBO:0041825"}


id: CHEBI:16236
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ethanol","termid":"CHEBI:16236"}


id: PBO:0058704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6832","termid":"PBO:0058704"}


id: PBO:0071315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L27","termid":"PBO:0071315"}


id: GO:0016471
data:
  {"annotated_genes":["SJAG_01913","SJAG_00212","SJAG_02782","SJAG_04955","SJAG_04015","SJAG_01817","SJAG_00516","SJAG_01397","SJAG_00136","SJAG_02023","SJAG_01447","SJAG_01471","SJAG_05294","SJAG_03406"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[85910,91698,99922,86219,88095,95959],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000220"},{"annotations":[94935,96034,114716,92652,97655,98682,105870,84111],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000221"}]},"cv_name":"cellular_component","definition":"A proton-transporting two-sector ATPase complex found in the vacuolar membrane, where it acts as a proton pump to mediate acidification of the vacuolar lumen.","definition_xrefs":["ISBN:0716743663","GOC:mah","PMID:16449553"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton-transporting V-type ATPase complex","termid":"GO:0033176"},{"relation_name":"part_of","term_name":"vacuolar membrane","termid":"GO:0005774"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00136":null,"SJAG_00212":null,"SJAG_00516":null,"SJAG_01397":null,"SJAG_01447":null,"SJAG_01471":null,"SJAG_01817":null,"SJAG_01913":null,"SJAG_02023":null,"SJAG_02782":null,"SJAG_03406":null,"SJAG_04015":null,"SJAG_04955":null,"SJAG_05294":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005773"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0005773","GO:0032991"],"is_obsolete":false,"name":"vacuolar proton-transporting V-type ATPase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"vacuolar hydrogen-translocating V-type ATPase complex","type":"exact"}],"termid":"GO:0016471","terms_by_termid":{"GO:0000220":null,"GO:0000221":null}}


id: PBO:0048604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GID complex subunit 8 homolog","termid":"PBO:0048604"}


id: GO:0030828
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cGMP.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cGMP biosynthetic process (obsolete GO:0030828)","synonyms":[{"name":"activation of cGMP biosynthetic process","type":"narrow"},{"name":"positive regulation of cGMP anabolism","type":"exact"},{"name":"positive regulation of cGMP biosynthesis","type":"exact"},{"name":"positive regulation of cGMP formation","type":"exact"},{"name":"positive regulation of cGMP synthesis","type":"exact"},{"name":"stimulation of cGMP biosynthetic process","type":"narrow"},{"name":"up regulation of cGMP biosynthetic process","type":"exact"},{"name":"up-regulation of cGMP biosynthetic process","type":"exact"},{"name":"upregulation of cGMP biosynthetic process","type":"exact"}],"termid":"GO:0030828"}


id: PBO:0060526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear autoantigenic sperm protein","termid":"PBO:0060526"}


id: PR:O59704
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An elongator complex protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12747:SF0","PRO:DNx","OMA:SCHPO02614"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongator complex protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC36.07","secondary_identifiers":["UniProtKB:O59704"],"synonyms":[{"name":"Spom972h-IKBKAP","type":"exact"},{"name":"protein iki3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O59704"}


id: PBO:0063899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class V","termid":"PBO:0063899"}


id: PBO:0068005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 307","termid":"PBO:0068005"}


id: PBO:0086343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pseudouridine synthase; catalyzes only the formation of pseudouridine (Psi)-2819 in mitochondrial 21S rRNA; not essential for viability","termid":"PBO:0086343"}


id: GO:0014908
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a myotube cell. Myotube differentiation starts with myoblast fusion and the appearance of specific cell markers (this is the cell development step). Then individual myotubes can fuse to form bigger myotubes and start to contract. This process occurs as part of the process of skeletal muscle regeneration. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myotube differentiation","termid":"GO:0014902"},{"relation_name":"part_of","term_name":"skeletal muscle tissue regeneration","termid":"GO:0043403"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myotube differentiation involved in skeletal muscle regeneration","termid":"GO:0014908"}


id: PBO:0031408
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-pear-shaped_cell","termid":"PBO:0031408"}


id: GO:0004823
data:
  {"annotated_genes":["SJAG_04738","SJAG_02015"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91094,94127],"is_not":false,"summary":null,"term":"GO:0004823"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: leucine + ATP + tRNA(Leu) = AMP + diphosphate + 2 H+ + Leu-tRNA(Leu).","definition_xrefs":["RHEA:11688"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02015":null,"SJAG_04738":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0140098","GO:0003824","GO:0003674","GO:0140101","GO:0016874"],"is_obsolete":false,"name":"leucine-tRNA ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:6.1.1.4","KEGG_REACTION:R03657","Reactome:R-HSA-379974","MetaCyc:LEUCINE--TRNA-LIGASE-RXN","Reactome:R-HSA-380200"],"synonyms":[{"name":"leucine translase activity","type":"related"},{"name":"leucine-tRNA synthetase activity","type":"related"},{"name":"leucine:tRNALeu ligase (AMP-forming)","type":"related"},{"name":"leucyl-tRNA synthetase activity","type":"exact"},{"name":"leucyl-transfer RNA synthetase activity","type":"related"},{"name":"leucyl-transfer ribonucleate synthetase activity","type":"related"},{"name":"leucyl-transfer ribonucleic acid synthetase activity","type":"related"}],"termid":"GO:0004823","terms_by_termid":{"GO:0004823":null}}


id: GO:0090432
data:
  {"annotated_genes":["SJAG_03471","SJAG_03909"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101598,109430],"is_not":false,"summary":null,"term":"GO:0090432"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + myristic acid + CoA = AMP + diphosphate + myristoyl-CoA.","definition_xrefs":["PMID:18071249","GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long-chain fatty acid-CoA ligase activity","termid":"GO:0004467"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03471":null,"SJAG_03909":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016874"],"is_obsolete":false,"name":"myristoyl-CoA ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"myristoyl-CoA synthetase activity","type":"exact"}],"termid":"GO:0090432","terms_by_termid":{"GO:0090432":null}}


id: PR:O94469
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A high affinity choline transporter 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03142"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urea active transporter 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC23G7.13c","secondary_identifiers":["UniProtKB:O94469"],"synonyms":[{"name":"Spom972h-SLC5A7","type":"exact"}],"termid":"PR:O94469"}


id: GO:0033814
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3alpha,7alpha,12alpha-trihydroxy-5beta-cholanoyl-CoA + propanoyl-CoA = CoA + 3alpha,7alpha,12alpha-trihydroxy-24-oxo-5beta-cholestanoyl-CoA.","definition_xrefs":["EC:2.3.1.176"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C-acyltransferase activity","termid":"GO:0016408"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"propanoyl-CoA C-acyltransferase activity","secondary_identifiers":["MetaCyc:2.3.1.176-RXN","RHEA:16865"],"synonyms":[{"name":"3alpha,7alpha,12alpha-trihydroxy-5beta-cholanoyl-CoA:propanoyl-CoA C-acyltransferase activity","type":"related"},{"name":"PTE-2","type":"related"},{"name":"SCP-X","type":"related"},{"name":"SCPchi","type":"related"},{"name":"peroxisomal thiolase 2 activity","type":"narrow"},{"name":"sterol carrier protein-X","type":"related"},{"name":"sterol carrier protein-chi","type":"related"}],"termid":"GO:0033814"}


id: PBO:0079470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"twinfilin 1 pseudogene 2","termid":"PBO:0079470"}


id: PBO:0000143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nifs homolog, possible cysteine desulfurase","termid":"PBO:0000143"}


id: GO:0031381
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A virus-specific protein complex that possesses RNA-dependent RNA polymerase activity and replicates the genome of an RNA virus.","definition_xrefs":["GOC:mah","PMID:15574411","PMID:15613301"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA-directed RNA polymerase complex","termid":"GO:0031379"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"viral RNA-directed RNA polymerase complex","termid":"GO:0031381"}


id: PBO:0082973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic RNA-binding protein; shuttles between nucleus and cytoplasm and is exported from the nucleus in an mRNA export-dependent manner; associates with translating ribosomes; involved in heme regulation of Hap1p as a component of the HMC complex, also involved in the organization of actin filaments; contains a La motif; SRO9 has a paralog, SLF1, that arose from the whole genome duplication","termid":"PBO:0082973"}


id: PR:O13910
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A U3 small nucleolar ribonucleoprotein protein MPP10 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR17039:SF0","PRO:DNx","OMA:SCHPO00881"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 small nucleolar ribonucleoprotein protein mpp10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23C11.03","secondary_identifiers":["UniProtKB:O13910"],"synonyms":[{"name":"Spom972h-MPHOSPH10","type":"exact"}],"termid":"PR:O13910"}


id: SO:0001090
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Binding involving a covalent bond.","definition_xrefs":["EBIBS:GAR"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0001090 covalent_binding_site (obsolete SO:0001090)","synonyms":[{"name":"covalent binding site","type":"exact"}],"termid":"SO:0001090"}


