# terms

id: PBO:0030985
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_metabolic_process","termid":"PBO:0030985"}


id: PBO:0075726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRM pseudogene 2","termid":"PBO:0075726"}


id: PBO:0066582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rhodopsin","termid":"PBO:0066582"}


id: PBO:0083579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; similar to YLR334C and YOL106W","termid":"PBO:0083579"}


id: PR:O94315
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An oxidoreductase YdbC that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03968","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized oxidoreductase C215.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC215.11c","secondary_identifiers":["UniProtKB:O94315"],"synonyms":[{"name":"Spom972h-ydbC","type":"exact"}],"termid":"PR:O94315"}


id: PBO:0074661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 50A","termid":"PBO:0074661"}


id: PBO:0063245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin alpha 10","termid":"PBO:0063245"}


id: GO:0019208
data:
  {"annotated_genes":["SJAG_00078","SJAG_03309","SJAG_04638","SJAG_04627","SJAG_03940","SJAG_03681","SJAG_03272","SJAG_03353","SJAG_00526","SJAG_01270","SJAG_00095","SJAG_03793","SJAG_04968","SJAG_00369","SJAG_00883","SJAG_00229","SJAG_04871","SJAG_00534","SJAG_04999","SJAG_02380","SJAG_01901"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84801,114568],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008597"},{"annotations":[114569,103237],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019211"},{"annotations":[110983,93737,113943,88969,102573,111907],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072542"},{"annotations":[85447,86340],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004864"},{"annotations":[88970,95611,92371,108751,97297,89021,93738],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019888"},{"annotations":[83933,95458,107382],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004865"},{"annotations":[93899,86029],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008160"}]},"cv_name":"molecular_function","definition":"Binds to and modulates the activity of a phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a substrate molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme regulator activity","termid":"GO:0030234"}],"gene_count":21,"genes_by_uniquename":{"SJAG_00078":null,"SJAG_00095":null,"SJAG_00229":null,"SJAG_00369":null,"SJAG_00526":null,"SJAG_00534":null,"SJAG_00883":null,"SJAG_01270":null,"SJAG_01901":null,"SJAG_02380":null,"SJAG_03272":null,"SJAG_03309":null,"SJAG_03353":null,"SJAG_03681":null,"SJAG_03793":null,"SJAG_03940":null,"SJAG_04627":null,"SJAG_04638":null,"SJAG_04871":null,"SJAG_04968":null,"SJAG_04999":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0030234"}],"interesting_parent_ids":["GO:0003674","GO:0098772","GO:0030234"],"is_obsolete":false,"name":"phosphatase regulator activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0019208","terms_by_termid":{"GO:0004864":null,"GO:0004865":null,"GO:0008160":null,"GO:0008597":null,"GO:0019211":null,"GO:0019888":null,"GO:0072542":null}}


id: PR:P05219
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nda3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P05219"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta chain (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC26H8.07c","synonyms":[{"name":"Spom972h-nda3","type":"exact"},{"name":"beta-tubulin (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P05219"}


id: FYPO:0002510
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the palmitoylation of one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein modification during vegetative growth","termid":"FYPO:0000547"},{"relation_name":"is_a","term_name":"abnormal protein palmitoylation during vegetative growth","termid":"FYPO:0002506"},{"relation_name":"is_a","term_name":"increased protein palmitoylation","termid":"FYPO:0002509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0005447","FYPO:0002274","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased protein palmitoylation during vegetative growth","synonyms":[{"name":"increased protein palmitoylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002510"}


id: PBO:0051601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 24","termid":"PBO:0051601"}


id: PBO:0000388
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.1.3.48","termid":"PBO:0000388"}


id: GO:0080193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Lateral growth of the older parts of a stem that occurs when the central parenchyma cells and the not yet fully differentiated fiber cells of the bundle sheaths continue to undergo cell division and expansion for a long period of time, leading to an increase in girth of the stem.","definition_xrefs":["GOC:dhl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lateral growth","termid":"GO:0080190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"diffuse secondary thickening","termid":"GO:0080193"}


id: FYECO:0000243
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which leptomycin B (LMB) was added to the medium or assay buffer. LMB inhibits the nuclear export receptor Crm1.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ LMB","synonyms":[{"name":"+ leptomycin B","type":"exact"}],"termid":"FYECO:0000243"}


id: GO:1904481
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tetrahydrofolate stimulus.","definition_xrefs":["GOC:TermGenie","PMID:24698160","GO_REF:0000071","GOC:BHF","GOC:hal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organic cyclic compound","termid":"GO:0014070"},{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to tetrahydrofolate","termid":"GO:1904481"}


id: PBO:0086653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the vacuole; YOR292C is not an essential gene","termid":"PBO:0086653"}


id: GO:0098570
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side (leaflet) of the plastid inner membrane that faces the stroma, and any proteins embedded in it or loosely bound to its surface.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"side of membrane","termid":"GO:0098552"},{"relation_name":"part_of","term_name":"plastid inner membrane","termid":"GO:0009528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"stromal side of plastid inner membrane","termid":"GO:0098570"}


id: PBO:0062568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily AG member 1","termid":"PBO:0062568"}


id: GO:0075038
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent symbiont appressorium maturation.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of appressorium maturation (obsolete GO:0075038)","synonyms":[{"name":"negative regulation of appressorium maturation on or near host","type":"related"},{"name":"negative regulation of maturation of appressorium on or near host","type":"exact"}],"termid":"GO:0075038"}


id: PR:O43080
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- naa38 gene.","definition_xrefs":["UniProtKB:O43080","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-alpha-acetyltransferase 38, NatC auxiliary subunit (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC947.03c","synonyms":[{"name":"N-terminal acetyltransferase C complex subunit naa38 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-naa38","type":"exact"}],"termid":"PR:O43080"}


id: GO:0008269
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The binding activity of a molecule that brings together two molecules of the JAK signal transduction pathway, permitting them to function in a coordinated way.","definition_xrefs":["GOC:mtg_MIT_16mar07"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling adaptor activity","termid":"GO:0035591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0030674","GO:0060090","GO:0003674"],"is_obsolete":false,"name":"JAK pathway signal transduction adaptor activity","termid":"GO:0008269"}


id: GO:0008265
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the sulfurylation of the desulfo form of molybdenum cofactor (MoCo), a cofactor required for the activity of some enzymes, such as aldehyde oxidase.","definition_xrefs":["PMID:11549764","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfurtransferase activity","termid":"GO:0016783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016782"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016782","GO:0003674"],"is_obsolete":false,"name":"Mo-molybdopterin cofactor sulfurase activity","secondary_identifiers":["EC:2.8.1.9","Reactome:R-HSA-947499"],"synonyms":[{"name":"Mo-molybdopterin cofactor sulphurase activity","type":"exact"},{"name":"molybdopterin cofactor sulfurase activity","type":"exact"},{"name":"molybdopterin synthase sulfurylase activity","type":"exact"}],"termid":"GO:0008265"}


id: GO:0035683
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of a memory T cell from the blood vessels into the surrounding tissue. A memory T cell is a distinctly differentiated long-lived T cell that has the phenotype CD45RO-positive and CD127-positive.","definition_xrefs":["CL:0000813","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell extravasation","termid":"GO:0072683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"memory T cell extravasation","synonyms":[{"name":"memory T-cell extravasation","type":"exact"}],"termid":"GO:0035683"}


id: GO:0006748
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving lipoamide, the functional form of lipoic acid in which the carboxyl group is attached to protein by an amide linkage to a lysine amino group.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"lipoamide metabolic process","synonyms":[{"name":"lipoamide metabolism","type":"exact"}],"termid":"GO:0006748"}


id: GO:0047003
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dTDP-6-deoxy-L-talose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + H+ + NADPH.","definition_xrefs":["EC:1.1.1.134","RHEA:23648"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"dTDP-6-deoxy-L-talose 4-dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R02776","MetaCyc:1.1.1.134-RXN"],"synonyms":[{"name":"TDP-6-deoxy-L-talose dehydrogenase activity","type":"related"},{"name":"dTDP-6-deoxy-L-talose dehydrogenase (4-reductase)","type":"related"},{"name":"dTDP-6-deoxy-L-talose:NADP+ 4-oxidoreductase activity","type":"related"},{"name":"thymidine diphospho-6-deoxy-L-talose dehydrogenase activity","type":"related"}],"termid":"GO:0047003"}


id: PBO:0078702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon CAA) 4-1","termid":"PBO:0078702"}


id: GO:0006703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"estrogen metabolic process","termid":"GO:0008210"},{"relation_name":"is_a","term_name":"hormone biosynthetic process","termid":"GO:0042446"},{"relation_name":"is_a","term_name":"steroid hormone biosynthetic process","termid":"GO:0120178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"estrogen biosynthetic process","synonyms":[{"name":"estrogen anabolism","type":"exact"},{"name":"estrogen biosynthesis","type":"exact"},{"name":"estrogen formation","type":"exact"},{"name":"estrogen synthesis","type":"exact"},{"name":"oestrogen biosynthesis","type":"exact"},{"name":"oestrogen biosynthetic process","type":"exact"}],"termid":"GO:0006703"}


id: GO:0009082
data:
  {"annotated_genes":["SJAG_02841","SJAG_03562","SJAG_06635","SJAG_00396","SJAG_03985","SJAG_00830","SJAG_04098","SJAG_04149","SJAG_03243","SJAG_00107"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86740,109261],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009097"},{"annotations":[99793,104316,107099,83697,99307,106432,86741,109262],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901705"},{"annotations":[106433,99308,96849,86742,106074,109263,102178],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009098"},{"annotations":[109264,99309,86743,107101,106434],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009099"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branched-chain amino acid metabolic process","termid":"GO:0009081"},{"relation_name":"is_a","term_name":"carboxylic acid biosynthetic process","termid":"GO:0046394"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00107":null,"SJAG_00396":null,"SJAG_00830":null,"SJAG_02841":null,"SJAG_03243":null,"SJAG_03562":null,"SJAG_03985":null,"SJAG_04098":null,"SJAG_04149":null,"SJAG_06635":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0044281"],"is_obsolete":false,"name":"branched-chain amino acid biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"branched chain family amino acid anabolism","type":"exact"},{"name":"branched chain family amino acid biosynthesis","type":"exact"},{"name":"branched chain family amino acid biosynthetic process","type":"exact"},{"name":"branched chain family amino acid formation","type":"exact"},{"name":"branched chain family amino acid synthesis","type":"exact"}],"termid":"GO:0009082","terms_by_termid":{"GO:0009097":null,"GO:0009098":null,"GO:0009099":null,"GO:1901705":null}}


id: GO:1904757
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of gut granule assembly.","definition_xrefs":["GOC:TermGenie","PMID:17535251","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organelle assembly","termid":"GO:1902117"},{"relation_name":"is_a","term_name":"regulation of gut granule assembly","termid":"GO:1904755"},{"relation_name":"positively_regulates","term_name":"gut granule assembly","termid":"GO:1902900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of gut granule assembly","synonyms":[{"name":"activation of gut granule assembly","type":"narrow"},{"name":"activation of gut granule biogenesis","type":"narrow"},{"name":"activation of gut granule formation","type":"narrow"},{"name":"positive regulation of gut granule biogenesis","type":"exact"},{"name":"positive regulation of gut granule formation","type":"exact"},{"name":"up regulation of gut granule assembly","type":"exact"},{"name":"up regulation of gut granule biogenesis","type":"exact"},{"name":"up regulation of gut granule formation","type":"exact"},{"name":"up-regulation of gut granule assembly","type":"exact"},{"name":"up-regulation of gut granule biogenesis","type":"exact"},{"name":"up-regulation of gut granule formation","type":"exact"},{"name":"upregulation of gut granule assembly","type":"exact"},{"name":"upregulation of gut granule biogenesis","type":"exact"},{"name":"upregulation of gut granule formation","type":"exact"}],"termid":"GO:1904757"}


id: PBO:0028356
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_phosphatase_activity","termid":"PBO:0028356"}


id: GO:0006030
data:
  {"annotated_genes":["SJAG_04868","SJAG_04728","SJAG_00442","SJAG_03723","SJAG_00620","SJAG_00978"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84266,84777,98799,100661,84605],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006031"},{"annotations":[97532],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006032"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoglycan metabolic process","termid":"GO:0006022"},{"relation_name":"is_a","term_name":"glucosamine-containing compound metabolic process","termid":"GO:1901071"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00442":null,"SJAG_00620":null,"SJAG_00978":null,"SJAG_03723":null,"SJAG_04728":null,"SJAG_04868":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chitin metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"beta-1,4-linked N-acetylglucosamine metabolic process","type":"exact"},{"name":"beta-1,4-linked N-acetylglucosamine metabolism","type":"exact"},{"name":"chitin metabolism","type":"exact"}],"termid":"GO:0006030","terms_by_termid":{"GO:0006031":null,"GO:0006032":null}}


id: PBO:0057971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3689d-1","termid":"PBO:0057971"}


id: FYPO:0007083
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a short meiotic spindle assembles, and may begin elongation, but does not elongate normally or completely, and eventually collapses. Upon collapse the spindle may break or shrink.","definition_xrefs":["PomBase:mah","PMID:31532702"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiosis I","termid":"FYPO:0003603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"meiotic spindle collapse","synonyms":[{"name":"meiotic spindle breakage","type":"exact"},{"name":"broken meiotic spindle","type":"related"},{"name":"spindle collapse during meiosis","type":"exact"},{"name":"spindle collapse during meiotic cell cycle","type":"related"}],"termid":"FYPO:0007083"}


id: GO:0072728
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a Gentian violet stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to Gentian violet","synonyms":[{"name":"response to crystal violet","type":"exact"},{"name":"response to {4-[Bis-(4-dimethylamino-phenyl)-methylene]-cyclohexa-2,5-dienylidene}-dimethyl-ammonium chloride","type":"exact"}],"termid":"GO:0072728"}


id: GO:0034433
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A lipid modification process in which a steroid ester is formed by the combination of a carboxylic acid (often a fatty acid) and a steroid molecule (e.g. cholesterol).","definition_xrefs":["GOC:mah","GOC:BHF","GOC:rl","GOC:pde"],"gene_count":0,"genotype_count":0,"name":"obsolete steroid esterification (obsolete GO:0034433)","termid":"GO:0034433"}


id: PBO:0065180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRORY Y-linked lncRNA","termid":"PBO:0065180"}


id: PBO:0087044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L20B; homologous to mammalian ribosomal protein L18A, no bacterial homolog; RPL20B has a paralog, RPL20A, that arose from the whole genome duplication","termid":"PBO:0087044"}


id: PBO:0089947
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TORC2 serine/threonine protein kinase Tor1","termid":"PBO:0089947"}


id: GO:0047675
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-arabinonate = 2-dehydro-3-deoxy-D-arabinonate + H2O.","definition_xrefs":["EC:4.2.1.5","RHEA:21836"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"arabinonate dehydratase activity","secondary_identifiers":["KEGG_REACTION:R03032","MetaCyc:ARABINONATE-DEHYDRATASE-RXN"],"synonyms":[{"name":"D-arabinonate hydro-lyase (2-dehydro-3-deoxy-D-arabinonate-forming)","type":"related"},{"name":"D-arabinonate hydro-lyase activity","type":"related"}],"termid":"GO:0047675"}


id: PBO:0065992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAI1 antisense RNA 1","termid":"PBO:0065992"}


id: PBO:0050329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 31","termid":"PBO:0050329"}


id: PBO:0033781
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_site-specific_DNA_replication_termination_at_RTS1_barrier","termid":"PBO:0033781"}


id: GO:0036342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a post-anal tail is generated and organized. A post-anal tail is a muscular region of the body that extends posterior to the anus. The post-anal tail may aid locomotion and balance.","definition_xrefs":["GOC:kmv","Wikipedia:Chordate","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"post-anal tail morphogenesis","termid":"GO:0036342"}


id: GO:0033496
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving sinapate, (2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenylpropanoid metabolic process","termid":"GO:0009698"},{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"},{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"sinapate metabolic process","synonyms":[{"name":"sinapate metabolism","type":"exact"}],"termid":"GO:0033496"}


id: GO:0030915
data:
  {"annotated_genes":["SJAG_00213","SJAG_05323","SJAG_03436","SJAG_04932","SJAG_01776","SJAG_01332","SJAG_02545","SJAG_03702"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[84117,85119,85818,102295,107490,113245,113585,113859],"is_not":false,"summary":null,"term":"GO:0030915"}]},"cv_name":"cellular_component","definition":"A conserved complex that contains a heterodimer of SMC proteins (Smc5p and Smc6p, or homologs thereof) and several other proteins, and is involved in DNA repair and maintaining cell cycle arrest following DNA damage. In S. cerevisiae, this is an octameric complex called Mms21-Smc5-Smc6 complex, with at least five of its subunits conserved in fission yeast and humans.","definition_xrefs":["GOC:rb","PMID:27373152","PMID:14701739","PMID:15738391"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SUMO ligase complex","termid":"GO:0106068"},{"relation_name":"part_of","term_name":"condensed chromosome","termid":"GO:0000793"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00213":null,"SJAG_01332":null,"SJAG_01776":null,"SJAG_02545":null,"SJAG_03436":null,"SJAG_03702":null,"SJAG_04932":null,"SJAG_05323":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0032991","GO:0005694","GO:0005575"],"is_obsolete":false,"name":"Smc5-Smc6 complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0030915","terms_by_termid":{"GO:0030915":null}}


id: PBO:0059473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MSL complex subunit 3","termid":"PBO:0059473"}


id: PBO:0047653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FKBP prolyl isomerase 5","termid":"PBO:0047653"}


id: GO:0046322
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of fatty acid oxidation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of fatty acid metabolic process","termid":"GO:0045922"},{"relation_name":"is_a","term_name":"regulation of fatty acid oxidation","termid":"GO:0046320"},{"relation_name":"negatively_regulates","term_name":"fatty acid oxidation","termid":"GO:0019395"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"negative regulation of fatty acid oxidation","synonyms":[{"name":"down regulation of fatty acid oxidation","type":"exact"},{"name":"down-regulation of fatty acid oxidation","type":"exact"},{"name":"downregulation of fatty acid oxidation","type":"exact"},{"name":"inhibition of fatty acid oxidation","type":"narrow"}],"termid":"GO:0046322"}


id: PBO:0011489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-N, kinetochore protein Mis15","termid":"PBO:0011489"}


id: PBO:0039159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylate kinase 4 pseudogene 6","termid":"PBO:0039159"}


id: PATO:0001314
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"variability of temperature","termid":"PATO:0001304"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"variant temperature","termid":"PATO:0001314"}


id: PBO:0043430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cornichon family AMPA receptor auxiliary protein 2","termid":"PBO:0043430"}


id: PBO:0000936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"High-mobility group non-histone chromatin protein (predicted)","termid":"PBO:0000936"}


id: GO:1905201
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of gibberellin from one side of a membrane to the other.","definition_xrefs":["PMID:27139299","GO_REF:0000070","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transporter activity","termid":"GO:0046943"},{"relation_name":"is_a","term_name":"lipid transmembrane transporter activity","termid":"GO:0170055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"gibberellin transmembrane transporter activity","termid":"GO:1905201"}


id: PBO:0005122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"condensin complex non-SMC subunit Cnd2","termid":"PBO:0005122"}


id: GO:0097123
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex consisting of cyclin A1 and cyclin-dependent kinase 2 (CDK2). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner.","definition_xrefs":["PMID:15935619","GOC:so"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent protein kinase holoenzyme complex","termid":"GO:0000307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"cyclin A1-CDK2 complex","termid":"GO:0097123"}


id: PBO:0042205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin H pseudogene 1","termid":"PBO:0042205"}


id: PBO:0004729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial threonine ammonia-lyase (predicted)","termid":"PBO:0004729"}


id: GO:0110095
data:
  {"annotated_genes":["SJAG_05256","SJAG_02960","SJAG_02010","SJAG_01457"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108734],"is_not":false,"summary":null,"term":"GO:0110095"},{"annotations":[101038],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140041"},{"annotations":[91580,99491],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046294"}]},"cv_name":"biological_process","definition":"Any process carried out at the cellular level that reduces or removes the toxicity of an aldehyde. These may include transport of aldehydes away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance.","definition_xrefs":["PMID:25656103","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular detoxification","termid":"GO:1990748"},{"relation_name":"part_of","term_name":"cellular response to aldehyde","termid":"GO:0110096"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01457":null,"SJAG_02010":null,"SJAG_02960":null,"SJAG_05256":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098754"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0098754","GO:0008150"],"is_obsolete":false,"name":"cellular detoxification of aldehyde","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0110095","terms_by_termid":{"GO:0046294":null,"GO:0110095":null,"GO:0140041":null}}


id: GO:0071765
data:
  {"annotated_genes":["SJAG_03491","SJAG_01745"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87392,114159],"is_not":false,"summary":null,"term":"GO:0071765"}]},"cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nuclear inner membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear membrane organization","termid":"GO:0071763"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01745":null,"SJAG_03491":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"nuclear inner membrane organization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"nuclear inner membrane organisation","type":"exact"},{"name":"nuclear inner membrane organization and biogenesis","type":"related"}],"termid":"GO:0071765","terms_by_termid":{"GO:0071765":null}}


id: PBO:0058278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4655","termid":"PBO:0058278"}


id: SO:0000381
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A group II intron that recognizes IBS1/EBS1 and IBS2/EBS2 for the 5-prime exon and gamma/gamma-prime for the 3-prime exon.","definition_xrefs":["PMID:20463000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"group_II_intron","termid":"SO:0000603"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"group_IIA_intron","synonyms":[{"name":"group IIA intron","type":"exact"}],"termid":"SO:0000381"}


id: PBO:0042752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromere protein V like 2","termid":"PBO:0042752"}


id: FYPO:0001328
data:
  {"alleles_by_uniquename":{"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_03596:allele-1":{"allele_type":"amino_acid_mutation","description":"L264P,P442T","gene_uniquename":"SJAG_03596","name":"cdc15-A","uniquename":"SJAG_03596:allele-1"},"SJAG_04280:allele-2":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-2"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"},"SJAG_04703:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04703","name":"for3delta","uniquename":"SJAG_04703:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115328],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000231"},{"annotations":[115333],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000729"},{"annotations":[115440],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0001369"}],"single_locus_phenotype":[{"annotations":[115321],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000231"},{"annotations":[115444],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000198"},{"annotations":[115607,115561],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002998"},{"annotations":[115490],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0003315"},{"annotations":[115354],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0002026"},{"annotations":[115143,115322],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000729"},{"annotations":[115441],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0001369"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cytoskeleton organization is abnormal in the vegetative growth phase of the cell cycle.","definition_xrefs":["GO:0007010","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cytoskeleton organization","termid":"FYPO:0000802"},{"relation_name":"is_a","term_name":"abnormal cellular component organization during vegetative growth","termid":"FYPO:0001353"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01143":null,"SJAG_02392":null,"SJAG_02592":null,"SJAG_03596":null,"SJAG_04280":null,"SJAG_04522":null,"SJAG_04703":null},"genotype_count":10,"genotypes_by_uniquename":{"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc15-A(L264P,P442T aa)","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild 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pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"rga4delta":{"display_name":"rga4delta","display_uniquename":"rga4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]}]},"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]},"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"wee1-as8(T582G aa)","display_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_04522","SJAG_03596","SJAG_04280","SJAG_02392","SJAG_01143"],"name":"abnormal cytoskeleton organization during vegetative growth","references_by_uniquename":{"PMID:25866389":null,"PMID:27059155":null,"PMID:30664646":null,"PMID:30726171":null,"PMID:32915139":null,"PMID:33791858":null},"single_locus_annotated_genes":["SJAG_03596","SJAG_04703","SJAG_04280","SJAG_04522","SJAG_02592","SJAG_02392","SJAG_01143"],"single_locus_genotype_uniquenames":["rga4delta","for3delta","sty1delta","pom1delta","cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type","wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","mid1delta"],"synonyms":[{"name":"abnormal cytoskeleton organisation during vegetative growth","type":"exact"},{"name":"abnormal cytoskeleton organization during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001328","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYECO:0000248":null,"FYECO:0000338":null,"FYPO:0000198":null,"FYPO:0000231":null,"FYPO:0000729":null,"FYPO:0001369":null,"FYPO:0002026":null,"FYPO:0002998":null,"FYPO:0003315":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: GO:0002159
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular process that results in the aggregation, arrangement and bonding together of a set of components to form a desmosome. A desmosome is a patch-like intercellular junction found in vertebrate tissues, consisting of parallel zones of two cell membranes, separated by an space of 25-35 nm, and having dense fibrillar plaques in the subjacent cytoplasm.","definition_xrefs":["GOC:hjd","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"desmosome organization","termid":"GO:0002934"},{"relation_name":"is_a","term_name":"cell-cell junction assembly","termid":"GO:0007043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"desmosome assembly","termid":"GO:0002159"}


id: PBO:0053619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 661","termid":"PBO:0053619"}


id: GO:0010376
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the stomatal complex. This process pertains to the initial formation of a structure from unspecified parts. The stomatal complex is the stomatal guard cells and their associated epidermal cells.","definition_xrefs":["PMID:17259259"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"stomatal complex morphogenesis","termid":"GO:0010103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"stomatal complex formation","termid":"GO:0010376"}


id: PBO:0056214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member B16","termid":"PBO:0056214"}


id: PBO:0056784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microfibril associated protein 1 pseudogene 1","termid":"PBO:0056784"}


id: GO:0090306
data:
  {"annotated_genes":["SJAG_03073","SJAG_04745","SJAG_01546","SJAG_01613"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90814,92809,95246],"is_not":false,"summary":null,"term":"GO:0090306"},{"annotations":[97452,95247],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140642"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form the spindle that contributes to the process of meiosis.","definition_xrefs":["GOC:tb","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic spindle organization","termid":"GO:0000212"},{"relation_name":"is_a","term_name":"spindle assembly","termid":"GO:0051225"},{"relation_name":"part_of","term_name":"meiotic chromosome segregation","termid":"GO:0045132"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01546":null,"SJAG_01613":null,"SJAG_03073":null,"SJAG_04745":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0007010","GO:0140013","GO:0007049","GO:0044085","GO:0000226","GO:0008150"],"is_obsolete":false,"name":"meiotic spindle assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"spindle assembly involved in meiosis","type":"exact"}],"termid":"GO:0090306","terms_by_termid":{"GO:0090306":null,"GO:0140642":null}}


id: PBO:0071518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L34 pseudogene 21","termid":"PBO:0071518"}


id: PBO:0044907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deuterosome assembly protein 1","termid":"PBO:0044907"}


id: PBO:0087077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L38; homologous to mammalian ribosomal protein L38, no bacterial homolog","termid":"PBO:0087077"}


id: PBO:0052437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLC2 antisense RNA 2","termid":"PBO:0052437"}


id: PBO:0063585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PET117 cytochrome c oxidase chaperone","termid":"PBO:0063585"}


id: PR:P40387
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An alpha,alpha-trehalose-phosphate synthase [UDP-forming] that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01450","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha,alpha-trehalose-phosphate synthase [UDP-forming] (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC328.03","secondary_identifiers":["UniProtKB:P40387"],"synonyms":[{"name":"Spom972h-otsA","type":"exact"},{"name":"UDP-glucose-glucosephosphate glucosyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"trehalose-6-phosphate synthase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P40387"}


id: GO:0140227
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by serotonin binding to a seratonin receptor on the surface of the target cell, followed by the movement of ions through a channel in the receptor complex. Ends with regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:25392484","PMID:27764665","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serotonin receptor signaling pathway","termid":"GO:0007210"},{"relation_name":"is_a","term_name":"ligand-gated ion channel signaling pathway","termid":"GO:1990806"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"serotonin-gated cation-selective signaling pathway","synonyms":[{"name":"5-HT-gated cation-selective signaling pathway","type":"exact"},{"name":"5-HT-gated cation-selective signalling pathway","type":"exact"},{"name":"5-hydroxytryptamine-gated cation-selective signaling pathway","type":"exact"},{"name":"5-hydroxytryptamine-gated cation-selective signalling pathway","type":"exact"},{"name":"serotonin-gated cation-selective signalling pathway","type":"exact"}],"termid":"GO:0140227"}


id: FYECO:0000155
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which choline was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ choline","termid":"FYECO:0000155"}


id: PBO:0004290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-hydroxyisobutyryl-CoA hydrolase (predicted)","termid":"PBO:0004290"}


id: GO:1903826
data:
  {"annotated_genes":["SJAG_03400","SJAG_02716","SJAG_03256"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[62738,94844],"is_not":false,"summary":null,"term":"GO:1903826"},{"annotations":[99847],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090518"}]},"cv_name":"biological_process","definition":"The directed movement of L-arginine across a membrane.","definition_xrefs":["PMID:18357653","GO_REF:0000069","PMID:8195186","GOC:TermGenie","PMID:22822152"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transport","termid":"GO:0015695"},{"relation_name":"is_a","term_name":"L-alpha-amino acid transmembrane transport","termid":"GO:1902475"},{"relation_name":"is_a","term_name":"basic amino acid transmembrane transport","termid":"GO:1990822"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02716":null,"SJAG_03256":null,"SJAG_03400":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"L-arginine transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["GO:0043091","GO:1903400","GO:0015809","GO:1902023"],"synonyms":[{"name":"L-arginine import","type":"narrow"},{"name":"L-arginine transport","type":"broad"},{"name":"L-arginine uptake","type":"narrow"},{"name":"arginine transmembrane transport","type":"related"},{"name":"arginine transport","type":"broad"}],"termid":"GO:1903826","terms_by_termid":{"GO:0090518":null,"GO:1903826":null}}


id: PBO:0047859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(1)(p31)","termid":"PBO:0047859"}


id: PBO:0064626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inorganic pyrophosphatase 2","termid":"PBO:0064626"}


id: PBO:0085841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and the nucleus; YDL129W is not an essential gene; relative distribution to the nucleus increases upon DNA replication stress","termid":"PBO:0085841"}


id: GO:1903695
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any MAPK cascade that is involved in ascospore formation.","definition_xrefs":["GOC:TermGenie","GO_REF:0000060","PMID:8443406"],"gene_count":0,"genotype_count":0,"name":"obsolete MAPK cascade involved in ascospore formation (obsolete GO:1903695)","synonyms":[{"name":"ERK/MAPK cascade involved in ascospore biosynthesis","type":"narrow"},{"name":"ERK/MAPK cascade involved in ascospore formation","type":"narrow"},{"name":"MAP kinase cascade involved in ascospore biosynthesis","type":"exact"},{"name":"MAP kinase cascade involved in ascospore formation","type":"exact"},{"name":"MAP kinase kinase kinase cascade involved in ascospore biosynthesis","type":"exact"},{"name":"MAP kinase kinase kinase cascade involved in ascospore formation","type":"exact"},{"name":"MAPK cascade involved in ascospore biosynthesis","type":"exact"},{"name":"MAPK signal transduction involved in ascospore biosynthesis","type":"exact"},{"name":"MAPK signal transduction involved in ascospore formation","type":"exact"},{"name":"MAPK signaling involved in ascospore biosynthesis","type":"related"},{"name":"MAPK signaling involved in ascospore formation","type":"related"},{"name":"MAPK signalling involved in ascospore biosynthesis","type":"related"},{"name":"MAPK signalling involved in ascospore formation","type":"related"},{"name":"MAPKKK cascade during sporulation involved in ascospore biosynthesis","type":"narrow"},{"name":"MAPKKK cascade during sporulation involved in ascospore formation","type":"narrow"},{"name":"MAPKKK cascade involved in ascospore biosynthesis","type":"exact"},{"name":"MAPKKK cascade involved in ascospore formation","type":"exact"},{"name":"mitogen-activated protein kinase cascade involved in ascospore biosynthesis","type":"exact"},{"name":"mitogen-activated protein kinase cascade involved in ascospore formation","type":"exact"}],"termid":"GO:1903695"}


id: GO:0090287
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stimulus","termid":"GO:0048583"},{"relation_name":"regulates","term_name":"cellular response to growth factor stimulus","termid":"GO:0071363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular response to growth factor stimulus","termid":"GO:0090287"}


id: GO:0032481
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of type I interferon production. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families.","definition_xrefs":["GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of type I interferon production","termid":"GO:0032479"},{"relation_name":"positively_regulates","term_name":"type I interferon production","termid":"GO:0032606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of type I interferon production","synonyms":[{"name":"activation of type I interferon production","type":"narrow"},{"name":"positive regulation of type I IFN production","type":"exact"},{"name":"stimulation of type I interferon production","type":"narrow"},{"name":"up regulation of type I interferon production","type":"exact"},{"name":"up-regulation of type I interferon production","type":"exact"},{"name":"upregulation of type I interferon production","type":"exact"}],"termid":"GO:0032481"}


id: GO:2000548
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of dendritic cell dendrite assembly.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of plasma membrane bounded cell projection assembly","termid":"GO:0120033"},{"relation_name":"is_a","term_name":"regulation of dendritic cell dendrite assembly","termid":"GO:2000547"},{"relation_name":"negatively_regulates","term_name":"dendritic cell dendrite assembly","termid":"GO:0097026"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"negative regulation of dendritic cell dendrite assembly","synonyms":[{"name":"negative regulation of dendritic extension","type":"related"}],"termid":"GO:2000548"}


id: GO:0072376
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A sequential series of modifications to a set of proteins where the product of one reaction catalyzes the following reaction, ultimately leading to the generation of a mature protein. Modifications typically include proteolysis or covalent modification, and may also include binding events.","definition_xrefs":["GOC:mah","GOC:add","GOC:pde"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein maturation","termid":"GO:0051604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0010467","GO:0051604","GO:0008150"],"is_obsolete":false,"name":"protein activation cascade","synonyms":[{"name":"protein activation pathway","type":"exact"},{"name":"protein activitory cascade","type":"exact"}],"termid":"GO:0072376"}


id: GO:0015820
data:
  {"annotated_genes":["SJAG_03970","SJAG_03591","SJAG_05346","SJAG_00991"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84165],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1905533"},{"annotations":[89371,94901,87788],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905534"}]},"cv_name":"biological_process","definition":"The directed movement of L-leucine, 2-amino-4-methylpentanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transport","termid":"GO:0015695"},{"relation_name":"is_a","term_name":"branched-chain amino acid transport","termid":"GO:0015803"},{"relation_name":"is_a","term_name":"neutral amino acid transport","termid":"GO:0015804"},{"relation_name":"is_a","term_name":"L-amino acid transport","termid":"GO:0015807"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00991":null,"SJAG_03591":null,"SJAG_03970":null,"SJAG_05346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"L-leucine transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"leucine transport","type":"broad"}],"termid":"GO:0015820","terms_by_termid":{"GO:1905533":null,"GO:1905534":null}}


id: PBO:0013132
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPHerical shape","termid":"PBO:0013132"}


id: GO:0008805
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: CO + H2O + ferrocytochrome b-561 = CO2 + 2 H+ + 2 ferricytochrome b-561.","definition_xrefs":["GOC:curators","RHEA:48880"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, cytochrome as acceptor","termid":"GO:0016622"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"carbon-monoxide oxygenase activity","secondary_identifiers":["EC:1.2.5.3","UM-BBD_reactionID:r0650","GO:0018999","GO:0047767","MetaCyc:RXN-21452","Wikipedia:Carbon-monoxide_dehydrogenase_(cytochrome_b-561)"],"synonyms":[{"name":"carbon monoxide oxidase activity","type":"related"},{"name":"carbon monoxide oxygenase (cytochrome b-561) activity","type":"narrow"},{"name":"carbon monoxide oxygenase activity","type":"exact"},{"name":"carbon monoxide,water:cytochrome b-561 oxidoreductase activity","type":"related"},{"name":"carbon monoxide:methylene blue oxidoreductase activity","type":"narrow"},{"name":"carbon-monoxide dehydrogenase (cytochrome b-561)","type":"related"},{"name":"cytochrome b561","type":"narrow"}],"termid":"GO:0008805"}


id: PBO:0086669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by fungal homology and RT-PCR; SWAT-GFP and mCherry fusion proteins localize to the endoplasmic reticulum","termid":"PBO:0086669"}


id: GO:0008900
data:
  {"annotated_genes":["SJAG_04167"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[108354],"is_not":false,"summary":null,"term":"GO:0008900"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) + K+(out) = ADP + phosphate + H+(out) + K+(in).","definition_xrefs":["RHEA:22044"],"direct_ancestors":[{"relation_name":"is_a","term_name":"P-type proton-exporting transporter activity","termid":"GO:0008553"},{"relation_name":"is_a","term_name":"P-type potassium transmembrane transporter activity","termid":"GO:0008556"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04167":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"P-type potassium:proton transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9727198","EC:7.2.2.19","MetaCyc:3.6.3.10-RXN","Reactome:R-HSA-937311","GO:0005390"],"synonyms":[{"name":"(K+ + H+)-ATPase activity","type":"related"},{"name":"ATP phosphohydrolase (H+/K+-exchanging)","type":"related"},{"name":"H+-K+-ATPase activity","type":"related"},{"name":"H+/K(+)-ATPase activity","type":"related"},{"name":"H+/K(+)-exchanging ATPase activity","type":"related"},{"name":"H+/K+-ATPase activity","type":"related"},{"name":"H+/K+-exchanging ATPase activity","type":"related"},{"name":"H,K-ATPase activity","type":"related"},{"name":"gastric H+/K(+) ATPase activity","type":"narrow"},{"name":"gastric H+/K+ ATPase","type":"narrow"},{"name":"hydrogen/potassium-exchanging ATPase activity","type":"exact"},{"name":"hydrogen:potassium exchanging ATPase activity","type":"exact"},{"name":"hydrogen:potassium-exchanging ATPase activity","type":"exact"},{"name":"potassium:proton exchanging ATPase activity","type":"related"},{"name":"proton pump activity","type":"broad"}],"termid":"GO:0008900","terms_by_termid":{"GO:0008900":null}}


id: GO:0051273
data:
  {"annotated_genes":["SJAG_02222","SJAG_01288","SJAG_03123","SJAG_02446","SJAG_05001","SJAG_02590","SJAG_03646","SJAG_01290","SJAG_04483","SJAG_04668","SJAG_04462","SJAG_01787","SJAG_02192","SJAG_03705","SJAG_01171","SJAG_04073","SJAG_04771","SJAG_03587","SJAG_00218","SJAG_00876","SJAG_05285","SJAG_01453","SJAG_04666","SJAG_01835","SJAG_00610","SJAG_04509"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86650,90265,98474],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006078"},{"annotations":[90514],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034413"},{"annotations":[105298],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034412"},{"annotations":[87639],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051274"},{"annotations":[103777,109171,102097,87640,105300,111820,87629,84145],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071970"},{"annotations":[98655,104611],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070880"},{"annotations":[97963,104069,97964,91148],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070879"},{"annotations":[88459],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0060635"},{"annotations":[83595,88463],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0140748"},{"annotations":[83972],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0032951"},{"annotations":[98861,88465,88448,101340,86827,113903],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090334"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving beta-glucans, compounds composed of glucose residues linked by beta-D-glucosidic bonds.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucan metabolic process","termid":"GO:0044042"}],"gene_count":26,"genes_by_uniquename":{"SJAG_00218":null,"SJAG_00610":null,"SJAG_00876":null,"SJAG_01171":null,"SJAG_01288":null,"SJAG_01290":null,"SJAG_01453":null,"SJAG_01787":null,"SJAG_01835":null,"SJAG_02192":null,"SJAG_02222":null,"SJAG_02446":null,"SJAG_02590":null,"SJAG_03123":null,"SJAG_03587":null,"SJAG_03646":null,"SJAG_03705":null,"SJAG_04073":null,"SJAG_04462":null,"SJAG_04483":null,"SJAG_04509":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04771":null,"SJAG_05001":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"beta-glucan metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"beta-glucan metabolism","type":"exact"}],"termid":"GO:0051273","terms_by_termid":{"GO:0006078":null,"GO:0032951":null,"GO:0034412":null,"GO:0034413":null,"GO:0051274":null,"GO:0060635":null,"GO:0070879":null,"GO:0070880":null,"GO:0071970":null,"GO:0090334":null,"GO:0140748":null}}


id: PBO:0069067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 314, pseudogene","termid":"PBO:0069067"}


id: PR:Q9Y7L0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A vesicle-trafficking protein SEC22b that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7L0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein transport protein sec22 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2A9.08c","synonyms":[{"name":"Spom972h-SEC22B","type":"exact"}],"termid":"PR:Q9Y7L0"}


id: PBO:0078386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Phe (anticodon GAA) 1-1","termid":"PBO:0078386"}


id: GO:0002264
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A change in the morphology or behavior of an endothelial cell resulting from exposure to an activating factor such as a cellular or soluble ligand, leading to the initiation or perpetuation of an immune response.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell activation involved in immune response","termid":"GO:0002263"},{"relation_name":"is_a","term_name":"endothelial cell activation","termid":"GO:0042118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endothelial cell activation involved in immune response","synonyms":[{"name":"endothelial cell activation during immune response","type":"related"}],"termid":"GO:0002264"}


id: PBO:0052175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium two pore domain channel subfamily K member 5","termid":"PBO:0052175"}


id: GO:0050731
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein phosphorylation","termid":"GO:0001934"},{"relation_name":"is_a","term_name":"regulation of peptidyl-tyrosine phosphorylation","termid":"GO:0050730"},{"relation_name":"positively_regulates","term_name":"peptidyl-tyrosine phosphorylation","termid":"GO:0018108"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of peptidyl-tyrosine phosphorylation","synonyms":[{"name":"activation of peptidyl-tyrosine phosphorylation","type":"narrow"},{"name":"stimulation of peptidyl-tyrosine phosphorylation","type":"narrow"},{"name":"up regulation of peptidyl-tyrosine phosphorylation","type":"exact"},{"name":"up-regulation of peptidyl-tyrosine phosphorylation","type":"exact"},{"name":"upregulation of peptidyl-tyrosine phosphorylation","type":"exact"}],"termid":"GO:0050731"}


id: GO:0061686
data:
  {"annotated_genes":["SJAG_00832"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99643],"is_not":false,"summary":null,"term":"GO:0061686"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-cysteine + N-alpha,N-alpha,N-alpha-trimethyl-L-histidine (hercynine) + O2 = hercynylcysteine sulfoxide + H2O.","definition_xrefs":["GOC:dph","PMID:24828577","PMID:4276459","RHEA:42704"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with oxygen as acceptor","termid":"GO:0046993"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00832":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"hercynylcysteine sulfoxide synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:1.21.3.10"],"synonyms":[{"name":"hercynylcysteine S-oxide synthase","type":"exact"},{"name":"hercynylcysteine sulfoxide synthase","type":"exact"}],"termid":"GO:0061686","terms_by_termid":{"GO:0061686":null}}


id: PBO:0004664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chorein homolog (predicted)","termid":"PBO:0004664"}


id: GO:0160179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which iron is taken up from the contents of the intestine.","definition_xrefs":["PMID:17729393","PMID:16054062"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal absorption","termid":"GO:0050892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intestinal iron absorption","termid":"GO:0160179"}


id: GO:2000314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of fibroblast growth factor receptor signaling pathway","termid":"GO:0040037"},{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation","termid":"GO:2000313"},{"relation_name":"negatively_regulates","term_name":"fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation","termid":"GO:0060825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation","synonyms":[{"name":"negative regulation of fibroblast growth factor receptor signalling pathway involved in neural plate anterior/posterior pattern formation","type":"exact"}],"termid":"GO:2000314"}


id: GO:0035893
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of platelet aggregation in a second organism.","definition_xrefs":["PMID:15922770","GOC:fj","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"perturbation of platelet aggregation in another organism","termid":"GO:0035892"},{"relation_name":"is_a","term_name":"suppression of blood coagulation in another organism","termid":"GO:0035899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"suppression of platelet aggregation in another organism","synonyms":[{"name":"disruption of platelet aggregation in other organism","type":"exact"},{"name":"down-regulation of platelet aggregation in other organism","type":"exact"},{"name":"downregulation of platelet aggregation in other organism","type":"exact"},{"name":"inhibition of platelet aggregation in other organism","type":"exact"},{"name":"negative regulation of platelet aggregation in another organism","type":"related"},{"name":"negative regulation of platelet aggregation in other organism","type":"exact"}],"termid":"GO:0035893"}


id: PBO:0065008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PR/SET domain 12","termid":"PBO:0065008"}


id: PBO:0039893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GDP dissociation inhibitor beta","termid":"PBO:0039893"}


id: PATO:0001521
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a sound wave by virtue of the maximum magnitude (value without regard to sign) of its disturbance.","definition_xrefs":["answers.com:answers.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amplitude","termid":"PATO:0000080"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sound amplitude","synonyms":[{"name":"loudness","type":"broad"}],"termid":"PATO:0001521"}


id: PR:O94373
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- atp4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94373"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase subunit 4, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1604.07","synonyms":[{"name":"Spom972h-atp4","type":"exact"}],"termid":"PR:O94373"}


id: GO:0044089
data:
  {"annotated_genes":["SJAG_00718","SJAG_00082","SJAG_00142","SJAG_04776","SJAG_04597","SJAG_03241","SJAG_01188","SJAG_02332","SJAG_03048","SJAG_04666","SJAG_00766","SJAG_03936","SJAG_01114","SJAG_03704","SJAG_03631","SJAG_01805","SJAG_03342","SJAG_01837","SJAG_01771","SJAG_02169","SJAG_05289","SJAG_03851","SJAG_03453","SJAG_02990","SJAG_01794","SJAG_03421","SJAG_00514","SJAG_02342","SJAG_04509","SJAG_00973","SJAG_02379","SJAG_02671","SJAG_05290","SJAG_04468","SJAG_02592"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86784],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903024"},{"annotations":[104652,104561],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000786"},{"annotations":[94986],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031453"},{"annotations":[85715,112692,98396],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905561"},{"annotations":[107369,89519,83971,85934,86901],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902917"},{"annotations":[84291,101686],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001178"},{"annotations":[102376,85304,111469,113889,101174,88461,109370,89849,85935,103043],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140281"},{"annotations":[107439],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110161"},{"annotations":[87231],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090053"},{"annotations":[83613,88462,90464],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905758"},{"annotations":[85530,89536],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090070"},{"annotations":[111192,85775],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045899"},{"annotations":[83614,98406,106525,89853,86064],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031031"},{"annotations":[90423,87232,106342],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090055"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cellular component biogenesis, a process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellular component.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular component biogenesis","termid":"GO:0044087"},{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"positively_regulates","term_name":"cellular component biogenesis","termid":"GO:0044085"}],"gene_count":35,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00142":null,"SJAG_00514":null,"SJAG_00718":null,"SJAG_00766":null,"SJAG_00973":null,"SJAG_01114":null,"SJAG_01188":null,"SJAG_01771":null,"SJAG_01794":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_02169":null,"SJAG_02332":null,"SJAG_02342":null,"SJAG_02379":null,"SJAG_02592":null,"SJAG_02671":null,"SJAG_02990":null,"SJAG_03048":null,"SJAG_03241":null,"SJAG_03342":null,"SJAG_03421":null,"SJAG_03453":null,"SJAG_03631":null,"SJAG_03704":null,"SJAG_03851":null,"SJAG_03936":null,"SJAG_04468":null,"SJAG_04509":null,"SJAG_04597":null,"SJAG_04666":null,"SJAG_04776":null,"SJAG_05289":null,"SJAG_05290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cellular component biogenesis","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0044089","terms_by_termid":{"GO:0031031":null,"GO:0031453":null,"GO:0045899":null,"GO:0090053":null,"GO:0090055":null,"GO:0090070":null,"GO:0110161":null,"GO:0140281":null,"GO:1902917":null,"GO:1903024":null,"GO:1905561":null,"GO:1905758":null,"GO:2000786":null,"GO:2001178":null}}


id: PBO:0004521
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.1.1.21","termid":"PBO:0004521"}


id: GO:1905434
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of retrograde trans-synaptic signaling by neuropeptide.","definition_xrefs":["PMID:19448629","GOC:bf","GOC:PARL","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell communication","termid":"GO:0010647"},{"relation_name":"is_a","term_name":"positive regulation of signaling","termid":"GO:0023056"},{"relation_name":"is_a","term_name":"regulation of retrograde trans-synaptic signaling by neuropeptide","termid":"GO:1905432"},{"relation_name":"positively_regulates","term_name":"retrograde trans-synaptic signaling by neuropeptide","termid":"GO:0099082"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of retrograde trans-synaptic signaling by neuropeptide","synonyms":[{"name":"activation of retrograde trans-synaptic signaling by neuropeptide","type":"narrow"},{"name":"positive regulation of neuropeptide-mediated retrograde trans-synaptic signaling","type":"related"},{"name":"up regulation of retrograde trans-synaptic signaling by neuropeptide","type":"exact"},{"name":"up-regulation of retrograde trans-synaptic signaling by neuropeptide","type":"exact"},{"name":"upregulation of retrograde trans-synaptic signaling by neuropeptide","type":"exact"}],"termid":"GO:1905434"}


id: FYECO:0000053
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which melissic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ fatty acid","termid":"FYECO:0000042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ melissic acid","termid":"FYECO:0000053"}


id: PBO:0074322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMARCA4 interacting SWI/SNF chromatin remodeling complex scaffold lncRNA","termid":"PBO:0074322"}


id: GO:0071065
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha9-beta1 integrin complex bound to vascular cell adhesion molecule-1.","definition_xrefs":["PMID:10209034"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex","synonyms":[{"name":"ITGA9-ITGB1-VCAM1 complex","type":"narrow"}],"termid":"GO:0071065"}


id: PBO:0049766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA complex group 4 pseudogene 3","termid":"PBO:0049766"}


id: GO:0015117
data:
  {"annotated_genes":["SJAG_00671"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84492],"is_not":false,"summary":null,"term":"GO:0015117"}]},"cv_name":"molecular_function","definition":"Enables the transfer of thiosulfate ions, HS2O3(1-), from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic anion transmembrane transporter activity","termid":"GO:0015103"},{"relation_name":"is_a","term_name":"sulfur compound transmembrane transporter activity","termid":"GO:1901682"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00671":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"thiosulfate transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:32807","MetaCyc:TRANS-RXN-496"],"synonyms":[{"name":"thiosulfate permease activity","type":"related"},{"name":"thiosulphate transporter activity","type":"exact"}],"termid":"GO:0015117","terms_by_termid":{"GO:0015117":null}}


id: PBO:0036406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"folylpolyglutamate synthase Met7 (predicted)","termid":"PBO:0036406"}


id: GO:0039605
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Selective and non-covalent interaction of a viral protein with a member of the TFIIB-class of host transcription factors, which contributes to the viral-suppression of assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a host DNA template.","definition_xrefs":["PMID:18768974","GOC:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete TFIIB-class transcription factor binding involved in viral suppression of host transcription initiation from RNA polymerase II promoter (obsolete GO:0039605)","termid":"GO:0039605"}


id: GO:0043629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The enzymatic addition of a sequence of adenylyl residues at the 3' end of a non-coding RNA (ncRNA) molecule. In eukaryotes, substrates include nuclear non-coding RNAs such as precursors and a variety of incorrectly processed forms of snRNAs, snoRNAs, rRNAs, and tRNAs, as well as discarded RNA fragments which have been removed from ncRNA primary transcripts. Polyadenylation of precursors is often linked to termination of transcription, but polyadenylation of RNAs targeted for degradation may also occur post-transcriptionally. This polyadenylation is important both for 3'-end processing to produce mature ncRNA species and also for targeting incorrectly processed or discarded RNA molecules for degradation.","definition_xrefs":["PMID:15828860","GOC:dgf","GOC:krc","PMID:15935758","PMID:16374505","PMID:16431988","GOC:rn","PMID:18951092"],"gene_count":0,"genotype_count":0,"name":"obsolete ncRNA polyadenylation (obsolete GO:0043629)","synonyms":[{"name":"non-coding RNA polyadenylation","type":"exact"}],"termid":"GO:0043629"}


id: PBO:0085160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleotide excision repair (NER) protein; binds damaged DNA during NER; binds DNA in an ATP-dependent manner (with Rad16p) during NER; required for repair of non-transcribed chromatin; subunit of Nucleotide Excision Repair Factor 4 (NEF4) and the Elongin-Cullin-Socs (ECS) ligase complex","termid":"PBO:0085160"}


id: GO:0070932
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by the removal of one or more acetyl groups.","definition_xrefs":["GOC:BHF","GOC:rl"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3 deacetylation (obsolete GO:0070932)","termid":"GO:0070932"}


id: PBO:0082999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytosolic serine hydroxymethyltransferase; converts serine to glycine plus 5,10 methylenetetrahydrofolate; major isoform involved in generating precursors for purine, pyrimidine, amino acid, and lipid biosynthesis","termid":"PBO:0082999"}


id: PBO:0054104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1467","termid":"PBO:0054104"}


id: FYPO:0005325
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which error-free translesion synthesis is normal (i.e. indistinguishable from wild type). Error-free translesion synthesis a DNA repair process that results in the conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication by using a specialized DNA polymerase or replication complex to insert a defined nucleotide across from the lesion.","definition_xrefs":["PomBase:mah","GO:0070987"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal DNA repair","termid":"FYPO:0006569"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001312","FYPO:0001320","FYPO:0000298","FYPO:0000257"],"is_obsolete":false,"name":"normal error-free translesion synthesis","synonyms":[{"name":"normal error-free translesion synthesis during mitotic cell cycle","type":"related"},{"name":"normal error-free translesion synthesis during vegetative growth","type":"exact"}],"termid":"FYPO:0005325"}


id: PBO:0087820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TFIID subunit (47 kDa); involved in promoter binding and RNA polymerase II transcription initiation","termid":"PBO:0087820"}


id: FYPO:0004279
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of hypoxanthine DNA N-glycosylase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA N-glycosylase activity","termid":"FYPO:0008216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000661","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"abnormal hypoxanthine DNA N-glycosylase activity","termid":"FYPO:0004279"}


id: FYPO:0002246
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of glucose binding by a gene product (usually a protein) in a mutant is increased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal monosaccharide binding","termid":"FYPO:0002245"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"increased glucose binding","termid":"FYPO:0002246"}


id: GO:0048355
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of mucilage that occur in the root cap; mucilage is normally synthesized during root growth.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mucilage biosynthetic process","termid":"GO:0010192"},{"relation_name":"part_of","term_name":"root cap mucilage metabolic process","termid":"GO:0048360"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"root cap mucilage biosynthetic process","synonyms":[{"name":"root cap mucilage anabolism","type":"exact"},{"name":"root cap mucilage biosynthesis","type":"exact"},{"name":"root cap mucilage formation","type":"exact"},{"name":"root cap mucilage synthesis","type":"exact"}],"termid":"GO:0048355"}


id: PBO:0064736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 72","termid":"PBO:0064736"}


id: PBO:0077493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM212 intronic transcript 1","termid":"PBO:0077493"}


id: PBO:0085311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphatidate phosphatase, converts phosphatidate to diacylglycerol; App1p, Pah1p, Dpp1p, and Lpp1p are responsible for all the phosphatidate phosphatase activity; component of cortical actin patches; interacts with components of endocytic pathway","termid":"PBO:0085311"}


id: PBO:0078695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon AAG) 6-1","termid":"PBO:0078695"}


id: GO:0090660
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The neurological system process driven by motile cilia on ependymal cells of the brain by which cerebrospinal fluid circulates from the sites of secretion to the sites of absorption. In ventricular cavities, the flow is unidirectional and rostrocaudal, in subarachnoid spaces, the flow is multi-directional.","definition_xrefs":["GOC:mgi_curators","PMID:22100360","PMID:24229449"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cilium movement involved in extracellular fluid movement","termid":"GO:0003351"},{"relation_name":"is_a","term_name":"nervous system process","termid":"GO:0050877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"cerebrospinal fluid circulation","synonyms":[{"name":"CSF circulation","type":"exact"},{"name":"CSF flow","type":"exact"},{"name":"cerebrospinal fluid flow","type":"exact"}],"termid":"GO:0090660"}


id: GO:0072741
data:
  {"annotated_genes":["SJAG_04597","SJAG_02645","SJAG_02831","SJAG_04461","SJAG_00333","SJAG_04703","SJAG_02022","SJAG_00279","SJAG_03602"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91707],"is_not":false,"summary":null,"term":"GO:0072741"},{"annotations":[90458],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0140325"},{"annotations":[94465],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0120047"},{"annotations":[87183,101354],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071574"},{"annotations":[106804,88369,114634],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904498"},{"annotations":[103954],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905391"}]},"cv_name":"biological_process","definition":"A cellular protein localization process in which a protein is transported to, or maintained at, the site of cell division.","definition_xrefs":["PMID:19756689","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization","termid":"GO:0008104"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_00333":null,"SJAG_02022":null,"SJAG_02645":null,"SJAG_02831":null,"SJAG_03602":null,"SJAG_04461":null,"SJAG_04597":null,"SJAG_04703":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to cell division site","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"protein localisation to cell division site","type":"exact"}],"termid":"GO:0072741","terms_by_termid":{"GO:0071574":null,"GO:0072741":null,"GO:0120047":null,"GO:0140325":null,"GO:1904498":null,"GO:1905391":null}}


id: GO:0060970
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regionalization process in which the areas along the dorsal/ventral axis of the embryonic heart tube are established. This process will determine the patterns of cell differentiation along the axis.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dorsal/ventral pattern formation","termid":"GO:0009953"},{"relation_name":"part_of","term_name":"embryonic heart tube development","termid":"GO:0035050"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic heart tube dorsal/ventral pattern formation","termid":"GO:0060970"}


id: PBO:0073374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SERTA domain containing 4B, pseudogene","termid":"PBO:0073374"}


id: GO:0010610
data:
  {"annotated_genes":["SJAG_03886","SJAG_02573","SJAG_05014"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85867,86255,87568],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000815"}]},"cv_name":"biological_process","definition":"Any process that modulates the propensity of mRNA molecules to degradation that is part of a change in state or activity of a cell as a result of an exogenous disturbance.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mRNA stability","termid":"GO:0043488"},{"relation_name":"part_of","term_name":"cellular response to stress","termid":"GO:0033554"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02573":null,"SJAG_03886":null,"SJAG_05014":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0016071"],"is_obsolete":false,"name":"regulation of mRNA stability involved in response to stress","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010610","terms_by_termid":{"GO:2000815":null}}


id: GO:0005334
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: norepinephrine(out) + Na+(out) + Cl-(out) = norepinephrine(in) + Na+(in) + Cl-(in).","definition_xrefs":["TC:2.A.22.1.2","PMID:22519513","PMID:21752877"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoamine transmembrane transporter activity","termid":"GO:0008504"},{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"sodium:chloride symporter activity","termid":"GO:0015378"},{"relation_name":"is_a","term_name":"organic hydroxy compound transmembrane transporter activity","termid":"GO:1901618"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"norepinephrine:sodium symporter activity","secondary_identifiers":["Wikipedia:Norepinephrine_transporter","Reactome:R-HSA-5659764","GO:0005333","Reactome:R-HSA-443997"],"synonyms":[{"name":"levarterenol transporter activity","type":"exact"},{"name":"noradrenaline transporter activity","type":"exact"},{"name":"norepinephrine transmembrane transporter activity","type":"exact"},{"name":"norepinephrine:sodium:chloride symporter activity","type":"exact"},{"name":"sodium/norepinephrine symporter activity","type":"exact"}],"termid":"GO:0005334"}


id: PBO:0029822
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_swollen_vegetative_cell_with_abnormal_cell_shape","termid":"PBO:0029822"}


id: PBO:0057111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 199b","termid":"PBO:0057111"}


id: GO:0009200
data:
  {"annotated_genes":["SJAG_00885","SJAG_03797","SJAG_04487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114594],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009204"},{"annotations":[95010],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035863"},{"annotations":[103262],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009216"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving a deoxyribonucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with triphosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside triphosphate metabolic process","termid":"GO:0009141"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00885":null,"SJAG_03797":null,"SJAG_04487":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"deoxyribonucleoside triphosphate metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"deoxyribonucleoside triphosphate metabolism","type":"exact"}],"termid":"GO:0009200","terms_by_termid":{"GO:0009204":null,"GO:0009216":null,"GO:0035863":null}}


id: PBO:0084083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Guanine nucleotide dissociation stimulator for Sec4p; functions in the post-Golgi secretory pathway; binds zinc, found both on membranes and in the cytosol","termid":"PBO:0084083"}


id: PBO:0062858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"otopetrin 3","termid":"PBO:0062858"}


id: PBO:0080165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"voltage dependent anion channel 1","termid":"PBO:0080165"}


id: GO:2000734
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation","termid":"GO:2000733"},{"relation_name":"negatively_regulates","term_name":"glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation","termid":"GO:2000701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation","synonyms":[{"name":"negative regulation of GDNF receptor signaling pathway of ureteric bud formation","type":"exact"},{"name":"negative regulation of glial cell derived neurotrophic factor receptor signaling pathway of ureteric bud formation","type":"exact"},{"name":"negative regulation of glial cell line-derived neurotrophic factor receptor signalling pathway of ureteric bud formation","type":"exact"},{"name":"negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway of ureteric bud formation","type":"exact"},{"name":"negative regulation of glial cell-derived neurotrophic factor receptor signalling pathway of ureteric bud formation","type":"exact"}],"termid":"GO:2000734"}


id: PBO:0083197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the verified gene KNS1","termid":"PBO:0083197"}


id: PBO:0031053
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_sister_chromatid_biorientation","termid":"PBO:0031053"}


id: FYPO:0005183
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the polyubiquitination of one or more specific proteins, or of specific protein sites, does not occur when the cell is exposed to ultraviolet light.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein polyubiquitination during vegetative growth","termid":"FYPO:0005928"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0002494"],"is_obsolete":false,"name":"abolished protein polyubiquitination during cellular response to UV","synonyms":[{"name":"abolished protein polyubiquitination during cellular response to UV during mitotic cell cycle","type":"related"},{"name":"abolished protein polyubiquitination during cellular response to UV during vegetative growth","type":"exact"},{"name":"abolished protein polyubiquitination during cellular response to ultraviolet light","type":"exact"},{"name":"abolished protein polyubiquitinylation during cellular response to UV","type":"related"},{"name":"abolished protein polyubiquitylation during cellular response to UV","type":"exact"},{"name":"protein polyubiquitination abolished during cellular response to UV","type":"exact"}],"termid":"FYPO:0005183"}


id: PBO:0075152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide C pseudogene 8","termid":"PBO:0075152"}


id: PBO:0031906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MICOS complex subunit Mic19","termid":"PBO:0031906"}


id: GO:2000401
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of lymphocyte migration.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mononuclear cell migration","termid":"GO:0071675"},{"relation_name":"regulates","term_name":"lymphocyte migration","termid":"GO:0072676"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of lymphocyte migration","termid":"GO:2000401"}


id: FYPO:0008176
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which RNAs transcribed from the centromere inner repeat region are present at greater levels than normal.","direct_ancestors":[{"relation_name":"is_a","term_name":"increased centromeric transcript level","termid":"FYPO:0004982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0006551","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased centromeric inner repeat transcript level","termid":"FYPO:0008176"}


id: PBO:0027001
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_protein_localization_to_prospore_membrane","termid":"PBO:0027001"}


id: PBO:0074188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 38 member 9","termid":"PBO:0074188"}


id: GO:0005335
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: serotonin(out) + Na+(out) + Cl-(out) = serotonin(in) + Na+(in)+ Cl-(in).","definition_xrefs":["PMID:21752877","PMID:22519513"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoamine transmembrane transporter activity","termid":"GO:0008504"},{"relation_name":"is_a","term_name":"sodium:chloride symporter activity","termid":"GO:0015378"},{"relation_name":"is_a","term_name":"organic hydroxy compound transmembrane transporter activity","termid":"GO:1901618"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"serotonin:sodium:chloride symporter activity","secondary_identifiers":["GO:0005336","GO:0015222","Reactome:R-HSA-444008","RHEA:51196","TC:2.A.22.1.1"],"synonyms":[{"name":"serotonin transmembrane transporter activity","type":"exact"},{"name":"serotonin:sodium symporter activity","type":"related"},{"name":"sodium/serotonin symporter activity","type":"exact"}],"termid":"GO:0005335"}


id: MOD:00599
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces one hydrogen atom with one methyl group.","definition_xrefs":["PubMed:11875433","Unimod:34"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"monomethylated residue","synonyms":[{"name":"Me1Res","type":"exact"},{"name":"Methyl","type":"related"},{"name":"Methylation","type":"related"}],"termid":"MOD:00599"}


id: PBO:0046615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group PABLB member 1, envelope","termid":"PBO:0046615"}


id: PBO:0080937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YY2 transcription factor","termid":"PBO:0080937"}


id: PBO:0086414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative GPI protein; SWAT-GFP and mCherry fusion proteins localize to the endoplasmic reticulum and vacuole respectively; YAR066W has a paralog, YHR214W, that arose from a segmental duplication","termid":"PBO:0086414"}


id: PR:Q10496
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A TBC1 domain family member 2B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase activating protein Gyp51 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC26F1.09","secondary_identifiers":["UniProtKB:Q10496"],"synonyms":[{"name":"SPAC26F1.09","type":"related"},{"name":"Spom972h-TBC1D2B","type":"exact"}],"termid":"PR:Q10496"}


id: PBO:0043319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CLIP1 antisense RNA 1","termid":"PBO:0043319"}


id: PBO:0062686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 51 subfamily A member 7","termid":"PBO:0062686"}


id: PBO:0065920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RABGGTB pseudogene 1","termid":"PBO:0065920"}


id: PR:Q09853
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein MON2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01811","PRO:DNx","PANTHER:PTHR10663:SF5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein MON2 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23D3.13c","secondary_identifiers":["UniProtKB:Q09853"],"synonyms":[{"name":"Spom972h-MON2","type":"exact"}],"termid":"PR:Q09853"}


id: PBO:0087312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Small subunit of carbamoyl phosphate synthetase; carbamoyl phosphate synthetase catalyzes a step in the synthesis of citrulline, an arginine precursor; translationally regulated by an attenuator peptide encoded by YOR302W within the CPA1 mRNA 5'-leader","termid":"PBO:0087312"}


id: PBO:0081583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF511-PRAP1 readthrough","termid":"PBO:0081583"}


id: PBO:0086962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Regulator of the Fps1p glycerol channel; under nonstress conditions, binds to Fps1p to positively regulate glycerol transport; under osmotic stress, multiple phosphorylation by Hog1p causes Ask10p to dissociate from Fps1p; forms homodimers and heterodimerizes with paralog Rgc1p; phosphorylated in response to oxidative stress; has a role in destruction of Ssn8p; associates with RNA polymerase II holoenzyme","termid":"PBO:0086962"}


id: FYPO:0001883
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing caspofungin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal growth on echinocandin","termid":"FYPO:0004892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0002058","FYPO:0000257","FYPO:0002060","FYPO:0000003","FYPO:0002057","FYPO:0000139"],"is_obsolete":false,"name":"normal growth on caspofungin","synonyms":[{"name":"normal cell population growth in presence of caspofungin","type":"exact"},{"name":"normal cell population growth on caspofungin","type":"exact"},{"name":"normal cell population growth on glucan synthase inhibitor","type":"broad"},{"name":"normal cellular response to caspofungin","type":"related"},{"name":"normal vegetative cell population growth on caspofungin","type":"exact"}],"termid":"FYPO:0001883"}


id: GO:0036384
data:
  {"annotated_genes":["SJAG_03676"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[109976],"is_not":false,"summary":null,"term":"GO:0036384"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: CDP + H2O = CMP + phosphate.","definition_xrefs":["RHEA:64880","GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside diphosphate phosphatase activity","termid":"GO:0017110"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03676":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"CDP phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"CDP diphosphatase activity","type":"broad"},{"name":"CDPase activity","type":"exact"},{"name":"cytidine diphosphatase activity","type":"exact"},{"name":"cytidine-diphosphatase activity","type":"exact"}],"termid":"GO:0036384","terms_by_termid":{"GO:0036384":null}}


id: PBO:0061370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophosmin 1 pseudogene 30","termid":"PBO:0061370"}


id: GO:0099565
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The part of synaptic transmission occurring in the post-synapse: a signal transduction pathway consisting of neurotransmitter receptor activation and its effects on postsynaptic membrane potential and the ionic composition of the postsynaptic cytosol.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor signaling pathway","termid":"GO:0007166"},{"relation_name":"is_a","term_name":"nervous system process","termid":"GO:0050877"},{"relation_name":"part_of","term_name":"chemical synaptic transmission","termid":"GO:0007268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"chemical synaptic transmission, postsynaptic","synonyms":[{"name":"postsynaptic process involved in chemical synaptic transmission","type":"exact"}],"termid":"GO:0099565"}


id: GO:0051965
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of synapse assembly, the aggregation, arrangement and bonding together of a set of components to form a synapse.","definition_xrefs":["GOC:ai","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of nervous system development","termid":"GO:0051962"},{"relation_name":"is_a","term_name":"regulation of synapse assembly","termid":"GO:0051963"},{"relation_name":"is_a","term_name":"positive regulation of cell junction assembly","termid":"GO:1901890"},{"relation_name":"positively_regulates","term_name":"synapse assembly","termid":"GO:0007416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of synapse assembly","synonyms":[{"name":"activation of synapse assembly","type":"narrow"},{"name":"positive regulation of synapse biogenesis","type":"exact"},{"name":"positive regulation of synaptogenesis","type":"exact"},{"name":"stimulation of synapse assembly","type":"narrow"},{"name":"up regulation of synapse assembly","type":"exact"},{"name":"up-regulation of synapse assembly","type":"exact"},{"name":"upregulation of synapse assembly","type":"exact"}],"termid":"GO:0051965"}


id: PBO:0032734
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replaced existing SPAC110.05 which was in the wrong frame","termid":"PBO:0032734"}


id: PBO:0017653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication preinitiation complex assembly protein","termid":"PBO:0017653"}


id: GO:0007415
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Separation of a motor axon away from a bundle of axons known as a fascicle.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axonal defasciculation","termid":"GO:0007414"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"defasciculation of motor neuron axon","termid":"GO:0007415"}


id: GO:0036126
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A microtubule-based flagellum (or cilium) that is part of a sperm, a mature male germ cell that develops from a spermatid.","definition_xrefs":["GOC:cilia","PMID:8441407","GOC:sart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"9+2 motile cilium","termid":"GO:0097729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"sperm flagellum","synonyms":[{"name":"sperm cilium","type":"exact"},{"name":"sperm tail","type":"exact"}],"termid":"GO:0036126"}


id: SO:1000171
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosomal deletion whereby three breaks occur in the same chromosome; one central region is lost, and the other is inverted.","definition_xrefs":["SO:ke","FB:reference_manual"],"direct_ancestors":[{"relation_name":"has_part","term_name":"deletion","termid":"SO:0000159"},{"relation_name":"has_part","term_name":"inversion","termid":"SO:1000036"},{"relation_name":"is_a","term_name":"chromosomal_deletion","termid":"SO:1000029"},{"relation_name":"is_a","term_name":"chromosomal_inversion","termid":"SO:1000030"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deficient_inversion","synonyms":[{"name":"(Drosophila)Df","type":"related"},{"name":"(Drosophila)DfIn","type":"related"},{"name":"deficient inversion","type":"exact"}],"termid":"SO:1000171"}


id: PBO:0085079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclear actin-related protein involved in chromatin remodeling; component of chromatin-remodeling enzyme complexes; promotes nucleosome shifts in the 3 prime direction","termid":"PBO:0085079"}


id: PBO:0072377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS27A pseudogene 3","termid":"PBO:0072377"}


id: GO:0047047
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glycerate + CO2 + NAD(P)+ = NAD(P)H + H+ + 2-hydroxy-3-oxosuccinate.","definition_xrefs":["MetaCyc:1.1.1.92-RXN","EC:1.1.1.92"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"oxaloglycolate reductase (decarboxylating) activity","synonyms":[{"name":"D-glycerate:NAD(P)+ oxidoreductase (carboxylating)","type":"related"}],"termid":"GO:0047047"}


id: PBO:0041091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BR serine/threonine kinase 2","termid":"PBO:0041091"}


id: GO:0042544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of melibiose, the disaccharide 6-O-alpha-D-galactopyranosyl-D-glucose.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"melibiose metabolic process","termid":"GO:0005994"},{"relation_name":"is_a","term_name":"disaccharide biosynthetic process","termid":"GO:0046351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"melibiose biosynthetic process","synonyms":[{"name":"melibiose anabolism","type":"exact"},{"name":"melibiose biosynthesis","type":"exact"},{"name":"melibiose formation","type":"exact"},{"name":"melibiose synthesis","type":"exact"}],"termid":"GO:0042544"}


id: GO:0018862
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-hydroxybenzoate + H+ + phosphate = CO2 + H2O + phenyl phosphate.","definition_xrefs":["RHEA:74015"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"phenyl-phosphate phosphatase/carboxylase activity","secondary_identifiers":["EC:4.1.1.123","MetaCyc:PHENYLPCARB-RXN","KEGG_REACTION:R05603","UM-BBD_reactionID:r0157"],"synonyms":[{"name":"phenylphosphate carboxylase activity","type":"exact"}],"termid":"GO:0018862"}


id: PBO:0029597
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-pyruvylated_galactose_absent_from_cell","termid":"PBO:0029597"}


id: PBO:0113283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Polyamine transporter of major facilitator superfamily; member of 12-spanner drug:H(+) antiporter DHA1 family; specific for spermine; localizes to plasma membrane; targeted to vacuole via AP-3 pathway; TPO3 has a paralog, TPO2, that arose from the whole genome duplication","termid":"PBO:0113283"}


id: PBO:0016906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Meu31","termid":"PBO:0016906"}


id: FYPO:0006555
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of two or more proteins to DNA is abnormal. The proteins may bind simultaneously or sequentially, but both or all would normally be present together on DNA at some time. One affected gene product may be encoded by the mutated gene, or all may be encoded by different genes.","definition_xrefs":["PomBase:mah","PMID:20924116"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA binding","termid":"FYPO:0000656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000653"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000707","FYPO:0000653"],"is_obsolete":false,"name":"abnormal multiple protein binding to DNA","synonyms":[{"name":"abnormal cooperative DNA binding","type":"related"},{"name":"abnormal protein-DNA ternary complex formation","type":"narrow"},{"name":"abnormal protein-protein interaction on DNA","type":"related"},{"name":"abnormal ternary complex formation","type":"related"},{"name":"abolished protein-DNA ternary complex formation","type":"narrow"},{"name":"abolished ternary complex formation","type":"related"}],"termid":"FYPO:0006555"}


id: GO:1900435
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to starvation.","definition_xrefs":["GOC:di","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of filamentous growth of a population of unicellular organisms in response to starvation (obsolete GO:1900435)","synonyms":[{"name":"down regulation of filamentous growth of a population of unicellular organisms in response to starvation","type":"exact"},{"name":"down-regulation of filamentous growth of a population of unicellular organisms in response to starvation","type":"exact"},{"name":"downregulation of filamentous growth of a population of unicellular organisms in response to starvation","type":"exact"},{"name":"inhibition of filamentous growth of a population of unicellular organisms in response to starvation","type":"narrow"}],"termid":"GO:1900435"}


id: PBO:0029411
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_response_to_mitotic_cell_cycle_checkpoint_signaling","termid":"PBO:0029411"}


id: GO:1990411
data:
  {"annotated_genes":["SJAG_03856"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[107543],"is_not":false,"summary":null,"term":"GO:1990411"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: hercynylcysteine sulfoxide + 2H+ = ergothioneine + pyruvate + ammonium.","definition_xrefs":["PMID:24828577"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-sulfur lyase activity","termid":"GO:0016846"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03856":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"hercynylcysteine sulfoxide lyase activity (ergothioneine-forming)","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:42688","MetaCyc:RXN-14428"],"termid":"GO:1990411","terms_by_termid":{"GO:1990411":null}}


id: PBO:0004919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Las1-like protein","termid":"PBO:0004919"}


id: GO:1905274
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of modification of postsynaptic actin cytoskeleton.","definition_xrefs":["PMID:21068295","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of modification of postsynaptic structure","termid":"GO:0099159"},{"relation_name":"regulates","term_name":"modification of postsynaptic actin cytoskeleton","termid":"GO:0098885"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of modification of postsynaptic actin cytoskeleton","synonyms":[{"name":"regulation of postsynaptic actin cytoskeleton remodelling","type":"exact"}],"termid":"GO:1905274"}


id: GO:0045266
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. One of two stalks that connect the catalytic core of the hydrogen-transporting ATP synthase to the plasma membrane-associated F0 proteins; is thought to prevent futile rotation of the catalytic core. Examples of this component are found in Bacterial species.","definition_xrefs":["PMID:10838056","GOC:mtg_sensu"],"gene_count":0,"genotype_count":0,"name":"obsolete plasma membrane proton-transporting ATP synthase, stator stalk (obsolete GO:0045266)","synonyms":[{"name":"hydrogen-transporting ATP synthase, stator stalk","type":"broad"},{"name":"proton-transporting ATP synthase, stator stalk","type":"broad"}],"termid":"GO:0045266"}


id: FYPO:0001336
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell process phenotype that affects a transport process in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport phenotype","termid":"FYPO:0000149"},{"relation_name":"is_a","term_name":"localization phenotype during vegetative growth","termid":"FYPO:0001337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"transport phenotype during vegetative growth","synonyms":[{"name":"fission yeast transport phenotype during vegetative growth","type":"exact"},{"name":"transport phenotype during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001336"}


id: FYPO:0001690
data:
  {"alleles_by_uniquename":{"SJAG_03720:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03720","name":"tel1delta","uniquename":"SJAG_03720:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115109],"is_not":false,"summary":null,"term":"FYPO:0001690"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing camptothecin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03720":null},"genotype_count":1,"genotypes_by_uniquename":{"tel1delta":{"display_name":"tel1delta","display_uniquename":"tel1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03720:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0002057","FYPO:0000003","FYPO:0002058","FYPO:0000139","FYPO:0002060"],"is_obsolete":false,"name":"normal growth on camptothecin","references_by_uniquename":{"PMID:23090706":null},"single_locus_annotated_genes":["SJAG_03720"],"single_locus_genotype_uniquenames":["tel1delta"],"synonyms":[{"name":"normal cell population growth in presence of camptothecin","type":"exact"},{"name":"normal cell population growth on CPT","type":"exact"},{"name":"normal cell population growth on camptothecin","type":"exact"},{"name":"normal cellular response to camptothecin","type":"related"},{"name":"normal vegetative cell population growth on camptothecin","type":"exact"}],"termid":"FYPO:0001690","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0001690":null}}


id: GO:0061848
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cholecystokinin stimulus.","definition_xrefs":["PMID:14622258"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cholecystokinin","termid":"GO:0061847"},{"relation_name":"is_a","term_name":"cellular response to peptide hormone stimulus","termid":"GO:0071375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to cholecystokinin","termid":"GO:0061848"}


id: PBO:0027302
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_during_cellular_response_to_mercury_ion","termid":"PBO:0027302"}


id: GO:0050826
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a freezing stimulus, temperatures below 0 degrees Celsius.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cold","termid":"GO:0009409"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to freezing","synonyms":[{"name":"antifreeze activity","type":"related"},{"name":"ice nucleation inhibitor activity","type":"related"}],"termid":"GO:0050826"}


id: PBO:0051849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iroquois homeobox 4","termid":"PBO:0051849"}


id: PBO:0087848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPR-containing co-chaperone; binds both Hsp82p (Hsp90) and Ssa1p (Hsp70); stimulates ATPase activity of Ssa1p; ts mutants reduce Hsp82p function, overexpression suppresses phenotypes of HSP82 ts allele and cpr7 deletion; human homolog TTC4 complements yeast cns1 mutant","termid":"PBO:0087848"}


id: PBO:0057293
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 511","termid":"PBO:0057293"}


id: GO:0050513
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N(4)-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl}-L-asparagine + UDP-alpha-D-xylose = N(4)-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-[beta-D-xylosyl-(1->2)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl}-L-asparagine + H+ + UDP.","definition_xrefs":["EC:2.4.2.38","RHEA:10612"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-xylosyltransferase activity","termid":"GO:0035252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016757","GO:0003824"],"is_obsolete":false,"name":"glycoprotein 2-beta-D-xylosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.2.38-RXN","KEGG_REACTION:R06016"],"synonyms":[{"name":"1,2-beta-xylosyltransferase activity","type":"related"},{"name":"beta-1,2-xylosyltransferase activity","type":"related"},{"name":"glycoprotein 2-b-D-xylosyltransferase activity","type":"exact"}],"termid":"GO:0050513"}


id: PBO:0057407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548i-4","termid":"PBO:0057407"}


id: GO:0014705
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A region of the A band in which myosin-binding protein C is located and that can be seen by electron microscopy. This is a functional zone that also includes myosin.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"A band","termid":"GO:0031672"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"C zone","termid":"GO:0014705"}


id: PATO:0001761
data:
  {"annotation_feature_type":"gene","cv_name":"quality","direct_ancestors":[{"relation_name":"is_a","term_name":"semi-fertile","termid":"PATO:0001767"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"male semi-fertile","termid":"PATO:0001761"}


id: PBO:0061919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 1 subfamily E member 2","termid":"PBO:0061919"}


id: GO:0002220
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to a cell surface receptor that leads to the activation of an innate immune response.","definition_xrefs":["GOC:add","ISBN:0781735149","PMID:15199967"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune response-activating cell surface receptor signaling pathway","termid":"GO:0002429"},{"relation_name":"is_a","term_name":"innate immune response-activating signaling pathway","termid":"GO:0002758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"innate immune response activating cell surface receptor signaling pathway","synonyms":[{"name":"activation of innate immune response by cell surface receptor signaling pathway","type":"exact"},{"name":"innate immune response activating cell surface receptor signalling pathway","type":"exact"}],"termid":"GO:0002220"}


id: GO:0031005
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a filamin, any member of a family of high molecular mass cytoskeletal proteins that crosslink actin filaments to form networks and stress fibers. Filamins contain an amino-terminal alpha-actinin-like actin binding domain, which is followed by a rod-domain composed of 4 to 24 100-residue repetitive segments including a carboxy-terminal dimerization domain.","definition_xrefs":["PMID:11336782","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeletal protein binding","termid":"GO:0008092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0008092","GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"filamin binding","secondary_identifiers":["GO:0031006","GO:0031007","GO:0031008"],"synonyms":[{"name":"ABP-278/276 binding","type":"narrow"},{"name":"ABP-280 binding","type":"narrow"},{"name":"ABPL binding","type":"narrow"},{"name":"alpha-filamin binding","type":"narrow"},{"name":"beta-filamin binding","type":"narrow"},{"name":"filamin A binding","type":"narrow"},{"name":"filamin B binding","type":"narrow"},{"name":"filamin C binding","type":"exact"},{"name":"filamin-1 binding","type":"narrow"},{"name":"filamin-2 binding","type":"narrow"},{"name":"filamin-3 binding","type":"narrow"},{"name":"filamin-A binding","type":"narrow"},{"name":"filamin-B binding","type":"exact"},{"name":"filamin-C binding","type":"narrow"},{"name":"gamma-filamin binding","type":"narrow"}],"termid":"GO:0031005"}


id: FYPO:0001680
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to chromatin is abolished during the round of DNA replication that precedes meiosis I.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to chromatin","termid":"FYPO:0001678"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to chromatin during premeiotic DNA replication","synonyms":[{"name":"abolished protein localisation to chromatin during premeiotic DNA replication","type":"exact"},{"name":"protein localization to chromatin during premeiotic DNA replication abolished","type":"exact"}],"termid":"FYPO:0001680"}


id: PBO:0005558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AMP-binding dehydrogenase (predicted)","termid":"PBO:0005558"}


id: PBO:0083496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YJL194W/CDC6","termid":"PBO:0083496"}


id: GO:0042269
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of natural killer cell mediated cytotoxicity.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte mediated cytotoxicity","termid":"GO:0001910"},{"relation_name":"is_a","term_name":"regulation of natural killer cell mediated immunity","termid":"GO:0002715"},{"relation_name":"regulates","term_name":"natural killer cell mediated cytotoxicity","termid":"GO:0042267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of natural killer cell mediated cytotoxicity","synonyms":[{"name":"regulation of NK cell mediated cell death","type":"exact"},{"name":"regulation of NK cell mediated cell killing","type":"exact"},{"name":"regulation of NK cell mediated cytolysis","type":"related"},{"name":"regulation of NK cell mediated cytotoxicity","type":"related"},{"name":"regulation of natural killer cell mediated cell death","type":"exact"},{"name":"regulation of natural killer cell mediated cell killing","type":"exact"},{"name":"regulation of natural killer cell mediated cytolysis","type":"related"},{"name":"regulation of natural killer-cell mediated cytolysis","type":"related"}],"termid":"GO:0042269"}


id: PBO:0054797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LINC02210-CRHR1 readthrough","termid":"PBO:0054797"}


id: FYPO:0003752
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the total amount of polyadenylated messenger RNA (mRNA) measured in the nucleus is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased nuclear polyadenylated mRNA level during vegetative growth","termid":"FYPO:0003119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0001320","FYPO:0002403","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased total nuclear polyadenylated mRNA level during vegetative growth","synonyms":[{"name":"increased level of bulk nuclear polyadenylated mRNA during vegetative growth","type":"exact"},{"name":"increased level of total nuclear polyadenylated mRNA during vegetative growth","type":"exact"},{"name":"increased nuclear bulk poly(A)+ mRNA level during vegetative growth","type":"exact"},{"name":"increased total nuclear polyadenylated mRNA accumulation during vegetative growth","type":"related"},{"name":"increased total nuclear polyadenylated mRNA level during mitotic cell cycle","type":"related"},{"name":"increased total nuclear polyadenylated mRNA transcript level during vegetative growth","type":"exact"},{"name":"increased total nuclear polyadenylated messenger RNA level during vegetative growth","type":"exact"},{"name":"total nuclear poly(A)+ mRNA accumulation","type":"related"},{"name":"total nuclear poly-A mRNA accumulation","type":"related"}],"termid":"FYPO:0003752"}


id: PBO:0045574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 26","termid":"PBO:0045574"}


id: PBO:0072037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 7","termid":"PBO:0072037"}


id: GO:0031446
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of fast-twitch skeletal muscle contraction.","definition_xrefs":["GOC:dph","GOC:ef","GOC:mtg_muscle","GOC:mah","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of twitch skeletal muscle contraction","termid":"GO:0014724"},{"relation_name":"regulates","term_name":"fast-twitch skeletal muscle fiber contraction","termid":"GO:0031443"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of fast-twitch skeletal muscle fiber contraction","synonyms":[{"name":"regulation of fast-twitch skeletal muscle contraction","type":"exact"}],"termid":"GO:0031446"}


id: PBO:0004074
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rictor homolog, Ste20","termid":"PBO:0004074"}


id: PBO:0060737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase complex assembly factor 4 pseudogene 2","termid":"PBO:0060737"}


id: GO:0051614
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that prevents the activation of the directed movement of serotonin into a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inhibition of neurotransmitter uptake","termid":"GO:0051609"},{"relation_name":"is_a","term_name":"negative regulation of serotonin uptake","termid":"GO:0051612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"inhibition of serotonin uptake","synonyms":[{"name":"inhibition of 5-HT uptake","type":"exact"},{"name":"inhibition of 5-hydroxytryptamine uptake","type":"exact"},{"name":"inhibition of 5HT uptake","type":"exact"},{"name":"inhibition of serotonin import","type":"exact"}],"termid":"GO:0051614"}


id: GO:0045604
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of epidermal cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epithelial cell differentiation","termid":"GO:0030856"},{"relation_name":"is_a","term_name":"regulation of epidermis development","termid":"GO:0045682"},{"relation_name":"regulates","term_name":"epidermal cell differentiation","termid":"GO:0009913"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of epidermal cell differentiation","synonyms":[{"name":"regulation of hypodermal cell differentiation","type":"related"}],"termid":"GO:0045604"}


id: PBO:0001718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OB fold","termid":"PBO:0001718"}


id: GO:0003432
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The growth of a growth plate cartilage chondrocyte, where growth contributes to the shaping of the chondrocyte over time.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth plate cartilage chondrocyte growth","termid":"GO:0003430"},{"relation_name":"part_of","term_name":"growth plate cartilage chondrocyte morphogenesis","termid":"GO:0003429"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell growth involved in growth plate cartilage chondrocyte morphogenesis","termid":"GO:0003432"}


id: GO:0051941
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of amino acid neurotransmitters into a neuron or glial cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neurotransmitter uptake","termid":"GO:0051580"},{"relation_name":"is_a","term_name":"regulation of amino acid transport","termid":"GO:0051955"},{"relation_name":"regulates","term_name":"amino acid neurotransmitter reuptake","termid":"GO:0051933"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of amino acid uptake involved in synaptic transmission","synonyms":[{"name":"regulation of amino acid neurotransmitter reuptake","type":"exact"},{"name":"regulation of amino acid neurotransmitter uptake","type":"exact"},{"name":"regulation of amino acid uptake during transmission of nerve impulse","type":"related"}],"termid":"GO:0051941"}


id: PBO:0034197
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sends_output_to","termid":"PBO:0034197"}


id: GO:0019244
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of lactate from other compounds, including pyruvate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyruvate metabolic process","termid":"GO:0006090"},{"relation_name":"is_a","term_name":"lactate biosynthetic process","termid":"GO:0019249"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"lactate biosynthetic process from pyruvate","synonyms":[{"name":"lactate anabolism from pyruvate","type":"exact"},{"name":"lactate formation from pyruvate","type":"exact"},{"name":"lactate synthesis from pyruvate","type":"exact"},{"name":"pyruvate fermentation to lactate","type":"exact"}],"termid":"GO:0019244"}


id: PBO:0089930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ASTRA/Swr1/Ino80 complex AAA family ATPase Rvb2","termid":"PBO:0089930"}


id: PR:O42826
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pdh1 gene.","definition_xrefs":["UniProtKB:O42826","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein pdh1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1235.08c","synonyms":[{"name":"Spom972h-pdh1","type":"exact"}],"termid":"PR:O42826"}


id: PBO:0073190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenoprotein T pseudogene 1","termid":"PBO:0073190"}


id: GO:0034703
data:
  {"annotated_genes":["SJAG_00985","SJAG_03114","SJAG_00915","SJAG_02598","SJAG_00836","SJAG_04122","SJAG_02105","SJAG_00542","SJAG_05204","SJAG_MIT15","SJAG_MIT09","SJAG_03925","SJAG_05229","SJAG_00133","SJAG_07003","SJAG_MIT37","SJAG_02564","SJAG_00438"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[115052,103900,115057,99696,90886,89319,115046,89915,97835],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045263"},{"annotations":[85196],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045267"},{"annotations":[100999,88894,99048,104785],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045269"},{"annotations":[103810,111845,99666],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045265"},{"annotations":[95650],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005891"}]},"cv_name":"cellular_component","definition":"An ion channel complex through which cations pass.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic ion channel complex","termid":"GO:0034702"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00133":null,"SJAG_00438":null,"SJAG_00542":null,"SJAG_00836":null,"SJAG_00915":null,"SJAG_00985":null,"SJAG_02105":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_03114":null,"SJAG_03925":null,"SJAG_04122":null,"SJAG_05204":null,"SJAG_05229":null,"SJAG_07003":null,"SJAG_MIT09":null,"SJAG_MIT15":null,"SJAG_MIT37":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"cation channel complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0034703","terms_by_termid":{"GO:0005891":null,"GO:0045263":null,"GO:0045265":null,"GO:0045267":null,"GO:0045269":null}}


id: GO:0052864
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 1-deoxy-D-xylulose 5-phosphate, the 5-phospho derivative of 1-deoxy-D-xylulose. 1-deoxy-D-xylulose 5-phosphate is an intermediate in the non-mevalonate pathway and a common precursor for isoprenoid, thiamin, and pyridoxol biosynthesis.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organophosphate catabolic process","termid":"GO:0046434"},{"relation_name":"is_a","term_name":"1-deoxy-D-xylulose 5-phosphate metabolic process","termid":"GO:0052863"},{"relation_name":"is_a","term_name":"carbohydrate derivative catabolic process","termid":"GO:1901136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"1-deoxy-D-xylulose 5-phosphate catabolic process","synonyms":[{"name":"(2R,3S)-2,3-dihydroxy-4-oxopentyl dihydrogen phosphate breakdown","type":"exact"},{"name":"(2R,3S)-2,3-dihydroxy-4-oxopentyl dihydrogen phosphate catabolic process","type":"exact"},{"name":"(2R,3S)-2,3-dihydroxy-4-oxopentyl dihydrogen phosphate catabolism","type":"exact"},{"name":"(2R,3S)-2,3-dihydroxy-4-oxopentyl dihydrogen phosphate degradation","type":"exact"},{"name":"1-deoxy-D-xylulose 5-phosphate breakdown","type":"exact"},{"name":"1-deoxy-D-xylulose 5-phosphate catabolism","type":"exact"},{"name":"1-deoxy-D-xylulose 5-phosphate degradation","type":"exact"}],"termid":"GO:0052864"}


id: PBO:0070750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10 pseudogene 6","termid":"PBO:0070750"}


id: PBO:0027429
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_rate_of_DNA_strand_elongation_involved_in_mitotic_DNA_replication_at_highly_transcribed_RNA_polymerase_II_genes","termid":"PBO:0027429"}


id: GO:0071878
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of an adenylate cyclase-activating adrenergic receptor protein signaling pathway activity. An adrenergic receptor signaling pathway is the series of molecular signals generated as a consequence of an adrenergic receptor binding to one of its physiological ligands.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway","termid":"GO:0106072"},{"relation_name":"negatively_regulates","term_name":"adenylate cyclase-activating adrenergic receptor signaling pathway","termid":"GO:0071880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of adenylate cyclase-activating adrenergic receptor signaling pathway","synonyms":[{"name":"negative regulation of adrenergic receptor signaling pathway","type":"exact"},{"name":"negative regulation of adrenergic receptor signalling pathway","type":"exact"}],"termid":"GO:0071878"}


id: PBO:0058846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 8075","termid":"PBO:0058846"}


id: GO:1903862
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of oxidative phosphorylation.","definition_xrefs":["PMID:10225962","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of oxidative phosphorylation","termid":"GO:0002082"},{"relation_name":"is_a","term_name":"positive regulation of cellular respiration","termid":"GO:1901857"},{"relation_name":"positively_regulates","term_name":"oxidative phosphorylation","termid":"GO:0006119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006091"},{"rel_name":"regulates","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"positive regulation of oxidative phosphorylation","synonyms":[{"name":"activation of oxidative phosphorylation","type":"narrow"},{"name":"activation of respiratory-chain phosphorylation","type":"narrow"},{"name":"positive regulation of respiratory-chain phosphorylation","type":"exact"},{"name":"up regulation of oxidative phosphorylation","type":"exact"},{"name":"up regulation of respiratory-chain phosphorylation","type":"exact"},{"name":"up-regulation of oxidative phosphorylation","type":"exact"},{"name":"up-regulation of respiratory-chain phosphorylation","type":"exact"},{"name":"upregulation of oxidative phosphorylation","type":"exact"},{"name":"upregulation of respiratory-chain phosphorylation","type":"exact"}],"termid":"GO:1903862"}


id: FYPO:0004107
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during G2 phase of the mitotic cell cycle is normal (i.e. indistinguishable from wild type). Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein level during vegetative growth","termid":"FYPO:0000833"},{"relation_name":"is_a","term_name":"altered protein level during vegetative growth","termid":"FYPO:0001325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0006551","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"normal protein level during mitotic G2 phase","synonyms":[{"name":"normal protein accumulation during mitotic G2 phase","type":"related"},{"name":"normal protein level during G2 phase of mitotic cell cycle","type":"related"},{"name":"normal protein level during mitotic G2 phase during vegetative growth","type":"exact"}],"termid":"FYPO:0004107"}


id: GO:0006539
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of glutamate, via the intermediate 2-oxoglutarate.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete glutamate catabolic process via 2-oxoglutarate (obsolete GO:0006539)","synonyms":[{"name":"glutamate breakdown via 2-oxoglutarate","type":"exact"},{"name":"glutamate catabolic process via 2-ketoglutarate","type":"exact"},{"name":"glutamate catabolic process via alpha-ketoglutarate","type":"exact"},{"name":"glutamate catabolic process via alpha-oxoglutarate","type":"exact"},{"name":"glutamate catabolism via 2-ketoglutarate","type":"exact"},{"name":"glutamate catabolism via alpha-ketoglutarate","type":"exact"},{"name":"glutamate catabolism via alpha-oxoglutarate","type":"exact"},{"name":"glutamate degradation via 2-oxoglutarate","type":"exact"}],"termid":"GO:0006539"}


id: PBO:0060822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NECAP endocytosis associated 2","termid":"PBO:0060822"}


id: PBO:0055004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2419","termid":"PBO:0055004"}


id: PBO:0087307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Small (67 amino acids) protein involved in sporulation; localizes to the prospore membrane; phosphorylated during meiosis; a longer, 5'-extended mRNA is also transcribed beginning in mid-meiosis, regulated by two MSEs (middle sporulation elements), and includes an uORF of 15 codons in its 5'-UTR; evidence transcription is regulated by Pdr1p","termid":"PBO:0087307"}


id: PATO:0000504
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhythm quality","termid":"PATO:0000078"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrhythmic","termid":"PATO:0000504"}


id: GO:0002205
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Mutations occurring somatically that result in amino acid changes in the rearranged V regions of immunoglobulins following the induction of and contributing to an immune response.","definition_xrefs":["GOC:add","ISBN:0781735149","PMID:11205333","PMID:14991701"],"direct_ancestors":[{"relation_name":"is_a","term_name":"somatic diversification of immunoglobulins involved in immune response","termid":"GO:0002208"},{"relation_name":"is_a","term_name":"somatic hypermutation of immunoglobulin genes","termid":"GO:0016446"},{"relation_name":"part_of","term_name":"B cell affinity maturation","termid":"GO:0002344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"somatic hypermutation of immunoglobulin genes involved in immune response","synonyms":[{"name":"somatic hypermutation of antibody genes during immune response","type":"related"},{"name":"somatic hypermutation of immunoglobulin genes during immune response","type":"related"}],"termid":"GO:0002205"}


id: PBO:0068078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 384","termid":"PBO:0068078"}


id: PBO:0062952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PABIR family member 3","termid":"PBO:0062952"}


id: GO:0098946
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the presynaptic endocytic zone membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of presynaptic endocytic zone membrane (obsolete GO:0098946)","synonyms":[{"name":"intrinsic to presynaptic active zone membrane","type":"narrow"}],"termid":"GO:0098946"}


id: FYPO:0004406
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing JM335.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0000139","FYPO:0002058","FYPO:0002060","FYPO:0000257"],"is_obsolete":false,"name":"normal growth on JM335","synonyms":[{"name":"normal cell population growth in presence of JM335","type":"exact"},{"name":"normal cell population growth on JM335","type":"exact"},{"name":"normal cellular response to JM335","type":"related"},{"name":"normal vegetative cell population growth on JM335","type":"exact"}],"termid":"FYPO:0004406"}


id: PBO:0090836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane iron transport multicopper oxidase Fio1","termid":"PBO:0090836"}


id: GO:0015909
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a long-chain fatty acid into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A long-chain fatty acid has an aliphatic tail containing 13 to 22 carbons.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid transport","termid":"GO:0015908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"long-chain fatty acid transport","termid":"GO:0015909"}


id: GO:1902056
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving (25S)-Delta(7)-dafachronate.","definition_xrefs":["PMID:22505847","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid metabolic process","termid":"GO:0008202"},{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"},{"relation_name":"is_a","term_name":"cellular ketone metabolic process","termid":"GO:0042180"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"(25S)-Delta(7)-dafachronate metabolic process","synonyms":[{"name":"(25S)-Delta(7)-dafachronate metabolism","type":"exact"}],"termid":"GO:1902056"}


id: GO:0009606
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of an organism, or part of an organism, in response to an external source of stimulus, usually toward or away from it.","definition_xrefs":["GOC:curators","ISBN:0877795088"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to external stimulus","termid":"GO:0009605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tropism","secondary_identifiers":["Wikipedia:Tropism"],"termid":"GO:0009606"}


id: GO:0006091
data:
  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580],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0009051"},{"annotations":[92617],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:2001172"},{"annotations":[85759],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905857"},{"annotations":[103901,89916,103811,115053,115058,85197,99697,115047,101000,90887,99049,88895,111846,89320,97836,99667,104786],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0042776"},{"annotations":[112775],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0019643"},{"annotations":[107886,93660,90425,105692],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1903715"},{"annotations":[74924],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0043456"},{"annotations":[85252,112573,85981,90508,106126,109459,84887,111744,108073,102730,95486,112776,69718,109205,110975],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006099"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular metabolic 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of precursor metabolites and energy","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"energy pathways","type":"broad"},{"name":"intermediary metabolism","type":"related"},{"name":"metabolic energy generation","type":"related"}],"termid":"GO:0006091","terms_by_termid":{"GO:0005977":null,"GO:0005978":null,"GO:0005980":null,"GO:0006091":null,"GO:0006096":null,"GO:0006099":null,"GO:0006112":null,"GO:0006119":null,"GO:0006120":null,"GO:0006121":null,"GO:0006122":null,"GO:0006123":null,"GO:0006740":null,"GO:0009051":null,"GO:0009052":null,"GO:0009060":null,"GO:0019643":null,"GO:0019655":null,"GO:0019660":null,"GO:0042775":null,"GO:0042776":null,"GO:0043456":null,"GO:0043490":null,"GO:0045719":null,"GO:0045820":null,"GO:0061613":null,"GO:0061621":null,"GO:0061688":null,"GO:0061723":null,"GO:0140647":null,"GO:1903715":null,"GO:1905857":null,"GO:2001172":null}}


id: PBO:0060817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-terminal EF-hand calcium binding protein 2","termid":"PBO:0060817"}


id: PBO:0042821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxylesterase 1 pseudogene 1","termid":"PBO:0042821"}


id: MOD:00937
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Post-translational","definition_xrefs":["Unimod:505"],"direct_ancestors":[{"relation_name":"is_a","term_name":"levuglandinyl (prostaglandin H2) adduct","termid":"MOD:00846"},{"relation_name":"is_a","term_name":"modified L-arginine residue","termid":"MOD:00902"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Levuglandinyl - arginine lactam adduct","synonyms":[{"name":"LG-lactam-R","type":"related"},{"name":"Levuglandinyl - arginine lactam adduct","type":"related"}],"termid":"MOD:00937"}


id: PBO:0052297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KH RNA binding domain containing, signal transduction associated 2","termid":"PBO:0052297"}


id: GO:0047182
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an alcohol + 1-O-trans-cinnamoyl-beta-D-glucopyranose = beta-D-glucose + alkyl cinnamate.","definition_xrefs":["EC:2.3.1.152","MetaCyc:2.3.1.152-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"alcohol O-cinnamoyltransferase activity","secondary_identifiers":["RHEA:23524"],"synonyms":[{"name":"1-O-trans-cinnamoyl-beta-D-glucopyranose:alcohol O-cinnamoyltransferase activity","type":"related"}],"termid":"GO:0047182"}


id: PBO:0073523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3BP5 antisense RNA 1","termid":"PBO:0073523"}


id: GO:1900629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving methanophenazine.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"methanophenazine metabolic process","synonyms":[{"name":"methanophenazine metabolism","type":"exact"}],"termid":"GO:1900629"}


id: GO:0110131
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex that localizes to actin cortical patches at sites of endocytosis and negatively regulates barbed end F-actin assembly, resulting in the generation of free actin pools. The Aim21-Tda2 complex is necessary for efficient endocytosis and balancing the distribution of actin between patches and cables.","definition_xrefs":["GOC:rn","PMID:28706108","PMID:29467252"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"actin cortical patch","termid":"GO:0030479"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0030479"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"part_of","termid":"GO:0005938"}],"interesting_parent_ids":["GO:0015629","GO:0030479","GO:0005938","GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"Aim21-Tda2 complex","synonyms":[{"name":"Aim21/Tda2 complex","type":"exact"}],"termid":"GO:0110131"}


id: GO:0102358
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 7,8-dihydroxycoumarin + S-adenosyl-L-methionine = 7-hydroxy-8-methoxycoumarin + H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:68960"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016741","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"daphnetin-8-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-13448"],"termid":"GO:0102358"}


id: RO:0000080
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence","direct_ancestors":[{"relation_name":"is_a","term_name":"inheres_in","termid":"RO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"quality_of","termid":"RO:0000080"}


id: PBO:0051261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable (III)-67-3 (pseudogene)","termid":"PBO:0051261"}


id: PBO:0065860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB17 divergent transcript","termid":"PBO:0065860"}


id: GO:0140802
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: [protein]-C-terminal glycine + NAD+ = [protein]-C-terminal O-(ADP-D-ribosyl)-glycine + nicotinamide.","definition_xrefs":["RHEA:58268","PMID:28525742"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NAD+-protein ADP-ribosyltransferase activity","termid":"GO:1990404"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016757","GO:0140096","GO:0016740"],"is_obsolete":false,"name":"NAD+-protein-C-terminal glycine ADP-ribosyltransferase activity","termid":"GO:0140802"}


id: GO:0001555
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental growth process in which an oocyte irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.","direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"developmental cell growth","termid":"GO:0048588"},{"relation_name":"part_of","term_name":"oocyte development","termid":"GO:0048599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oocyte growth","termid":"GO:0001555"}


id: PBO:0027100
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_rDNA_antisense_small_RNA_level","termid":"PBO:0027100"}


id: GO:0032689
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon.","definition_xrefs":["GOC:add","GOC:mah","PMID:15546383"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of type II interferon production","termid":"GO:0032649"},{"relation_name":"negatively_regulates","term_name":"type II interferon production","termid":"GO:0032609"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of type II interferon production","secondary_identifiers":["GO:1902714","GO:0045077"],"synonyms":[{"name":"down regulation of interferon-gamma production","type":"exact"},{"name":"down-regulation of interferon-gamma production","type":"exact"},{"name":"downregulation of interferon-gamma production","type":"exact"},{"name":"inhibition of interferon-gamma production","type":"narrow"},{"name":"negative regulation of interferon-gamma biosynthetic process","type":"narrow"},{"name":"negative regulation of interferon-gamma production","type":"exact"},{"name":"negative regulation of interferon-gamma secretion","type":"narrow"}],"termid":"GO:0032689"}


id: GO:0031948
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucocorticoids.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of glucocorticoid metabolic process","termid":"GO:0031945"},{"relation_name":"is_a","term_name":"regulation of glucocorticoid biosynthetic process","termid":"GO:0031946"},{"relation_name":"is_a","term_name":"positive regulation of steroid hormone biosynthetic process","termid":"GO:0090031"},{"relation_name":"positively_regulates","term_name":"glucocorticoid biosynthetic process","termid":"GO:0006704"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"positive regulation of glucocorticoid biosynthetic process","synonyms":[{"name":"activation of glucocorticoid biosynthetic process","type":"narrow"},{"name":"stimulation of glucocorticoid biosynthetic process","type":"narrow"},{"name":"up regulation of glucocorticoid biosynthetic process","type":"exact"},{"name":"up-regulation of glucocorticoid biosynthetic process","type":"exact"},{"name":"upregulation of glucocorticoid biosynthetic process","type":"exact"}],"termid":"GO:0031948"}


id: PBO:0084940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Multicopper oxidase; integral membrane protein with similarity to Fet3p; may have a role in iron transport","termid":"PBO:0084940"}


id: GO:0000504
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A multisubunit complex that recognizes and unfolds ubiquitinated proteins, and translocates them to the core complex in an ATP dependent manner. As in, but not restricted to, the taxon Bacteria (Bacteria, ncbi_taxonomy_id:2).","definition_xrefs":["GOC:rb"],"gene_count":0,"genotype_count":0,"name":"obsolete proteasome regulatory particle (sensu Bacteria) (obsolete GO:0000504)","synonyms":[{"name":"26S proteasome","type":"narrow"},{"name":"proteasome regulatory particle (sensu Bacteria)","type":"exact"}],"termid":"GO:0000504"}


id: PBO:0060337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin VB pseudogene 2","termid":"PBO:0060337"}


id: PBO:0015681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial 3'-tRNA processing endonuclease tRNAse Z, Trz2","termid":"PBO:0015681"}


id: GO:0051469
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The joining of the lipid bilayer membrane around a vesicle with the lipid bilayer membrane around the vacuole.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle fusion","termid":"GO:0006906"},{"relation_name":"is_a","term_name":"vacuole fusion","termid":"GO:0097576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0016192","GO:0061024","GO:0006810"],"is_obsolete":false,"name":"vesicle fusion with vacuole","secondary_identifiers":["GO:0042146"],"synonyms":[{"name":"heterotypic vacuole fusion (non-autophagic)","type":"related"},{"name":"heterotypic vacuole fusion, non-autophagic","type":"related"}],"termid":"GO:0051469"}


id: PBO:0067579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 736, pseudogene","termid":"PBO:0067579"}


id: PBO:0062900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxidoreductase like domain containing 1","termid":"PBO:0062900"}


id: GO:0019255
data:
  {"annotated_genes":["SJAG_01209"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104896],"is_not":false,"summary":null,"term":"GO:0019255"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving glucose 1-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-1.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphate-containing compound metabolic process","termid":"GO:0006796"},{"relation_name":"is_a","term_name":"organophosphate metabolic process","termid":"GO:0019637"},{"relation_name":"is_a","term_name":"carbohydrate derivative metabolic process","termid":"GO:1901135"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01209":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glucose 1-phosphate metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:GLUCOSE1PMETAB-PWY","GO:0006008"],"synonyms":[{"name":"glucose 1-phosphate metabolism","type":"exact"},{"name":"glucose 1-phosphate utilization","type":"related"}],"termid":"GO:0019255","terms_by_termid":{"GO:0019255":null}}


id: GO:1904400
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a Thyroid stimulating hormone stimulus.","definition_xrefs":["PMID:11238928","GOC:TermGenie","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to glycoprotein","termid":"GO:1904587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to Thyroid stimulating hormone","termid":"GO:1904400"}


id: GO:0140315
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an iron ion to prevent it from interacting with other partners or to inhibit its localization to the area of the cell or complex where it is active.","definition_xrefs":["PMID:27780864"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal ion sequestering activity","termid":"GO:0140487"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140313"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140313","GO:0003674"],"is_obsolete":false,"name":"iron ion sequestering activity","termid":"GO:0140315"}


id: PBO:0042879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 206","termid":"PBO:0042879"}


id: PBO:0001501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNase P subunit (predicted)","termid":"PBO:0001501"}


id: GO:0042410
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + CoA + pimelate = AMP + diphosphate + H+ + pimelyl-CoA.","definition_xrefs":["EC:6.2.1.14","RHEA:14781"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"},{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"6-carboxyhexanoate-CoA ligase activity","secondary_identifiers":["KEGG_REACTION:R03209","MetaCyc:6-CARBOXYHEXANOATE--COA-LIGASE-RXN"],"synonyms":[{"name":"6-carboxyhexanoate:CoA ligase (AMP-forming)","type":"related"},{"name":"6-carboxyhexanoyl-CoA synthetase activity","type":"related"},{"name":"pimeloyl-CoA synthetase activity","type":"related"},{"name":"pimelyl-CoA synthetase activity","type":"related"}],"termid":"GO:0042410"}


id: PBO:0055963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 75B","termid":"PBO:0055963"}


id: GO:0102381
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: stevioside + UDP-alpha-D-glucose = H+ + rebaudioside A + UDP.","definition_xrefs":["RHEA:61756"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"stevioside glucosyltransferase activity (rebaudioside A forming)","secondary_identifiers":["MetaCyc:RXN-13517"],"termid":"GO:0102381"}


id: PBO:0060366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myogenin promoter associated myogenic regulatory antisense long non coding RNA","termid":"PBO:0060366"}


id: PBO:0073292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 14 pseudogene 14","termid":"PBO:0073292"}


id: PBO:0083644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Elongase I, medium-chain acyl elongase; catalyzes carboxy-terminal elongation of unsaturated C12-C16 fatty acyl-CoAs to C16-C18 fatty acids; ELO1 has a paralog, ELO2, that arose from the whole genome duplication","termid":"PBO:0083644"}


id: PBO:0041319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 2 open reading frame 69 pseudogene 5","termid":"PBO:0041319"}


id: PR:Q9HFE7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ankyrin-2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03046"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat-containing protein P16F5.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP16F5.05c","secondary_identifiers":["UniProtKB:Q9HFE7"],"synonyms":[{"name":"Spom972h-ANK2","type":"exact"}],"termid":"PR:Q9HFE7"}


id: PBO:0005026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein involved in ribosome biogenesis (predicted)","termid":"PBO:0005026"}


id: PR:Q9Y820
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pci2 gene.","definition_xrefs":["UniProtKB:Q9Y820","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PCI domain-containing protein C1105.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1105.07c","synonyms":[{"name":"Spom972h-pci2","type":"exact"}],"termid":"PR:Q9Y820"}


id: PBO:0068386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNF186 antisense RNA 1","termid":"PBO:0068386"}


id: GO:0001532
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with interleukin-21 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:jl","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor activity","termid":"GO:0004896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"interleukin-21 receptor activity","synonyms":[{"name":"IL-21 receptor activity","type":"exact"},{"name":"IL-21R","type":"exact"}],"termid":"GO:0001532"}


id: PBO:0015261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin peroxidase Pmp20","termid":"PBO:0015261"}


id: PBO:0039143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylate kinase 2","termid":"PBO:0039143"}


id: PBO:0061159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nicotinamide riboside kinase 2","termid":"PBO:0061159"}


id: PBO:0029646
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_cell_population_at_high_temperature_(obsolete_FYPO:0002074)","termid":"PBO:0029646"}


id: PR:Q10258
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A methylenetetrahydrofolate reductase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00458","PANTHER:PTHR21091:SF1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylenetetrahydrofolate reductase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC56F8.10","secondary_identifiers":["UniProtKB:Q10258"],"synonyms":[{"name":"Spom972h-MTHFR","type":"exact"}],"termid":"PR:Q10258"}


id: PBO:0045565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 13","termid":"PBO:0045565"}


id: GO:0010051
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana.","definition_xrefs":["GOC:tb","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regionalization","termid":"GO:0003002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"xylem and phloem pattern formation","synonyms":[{"name":"vascular tissue pattern formation","type":"exact"}],"termid":"GO:0010051"}


id: PBO:0041069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brain protein I3 pseudogene 2","termid":"PBO:0041069"}


id: PBO:0059134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MPHOSPH10 pseudogene 1","termid":"PBO:0059134"}


id: PBO:0000357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetylglucosamine-phosphate mutase (predicted)","termid":"PBO:0000357"}


id: GO:0051992
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine + di-trans,poly-cis-undecaprenyl phosphate = UMP + N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol.","definition_xrefs":["MetaCyc:PHOSNACMURPENTATRANS-RXN","EC:2.7.8.13"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016780","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity","secondary_identifiers":["RHEA:28386"],"termid":"GO:0051992"}


id: PBO:0088463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sororin, WAPL antagonist Sor1","termid":"PBO:0088463"}


id: GO:0030337
data:
  {"annotated_genes":["SJAG_04190","SJAG_01823"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100244,111408],"is_not":false,"summary":null,"term":"GO:0030337"}]},"cv_name":"molecular_function","definition":"An enzyme regulator activity that increases the processivity of polymerization by DNA polymerase, by allowing the polymerase to move rapidly along DNA while remaining topologically bound to it.","definition_xrefs":["PMID:7903401","PMID:8087839","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01823":null,"SJAG_04190":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0098772","GO:0030234","GO:0003674","GO:0140677"],"is_obsolete":false,"name":"DNA polymerase processivity factor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"processivity clamp","type":"exact"},{"name":"sliding clamp","type":"narrow"}],"termid":"GO:0030337","terms_by_termid":{"GO:0030337":null}}


id: PBO:0053638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 685","termid":"PBO:0053638"}


id: PBO:0034023
data:
  {"annotation_feature_type":"gene","cv_name":"pubprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"canto_approved_date","termid":"PBO:0034023"}


id: PBO:0075610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"speckle type BTB/POZ protein like","termid":"PBO:0075610"}


id: PBO:0055996
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long stress-induced non-coding transcript 5","termid":"PBO:0055996"}


id: FYPO:0004295
data:
  {"alleles_by_uniquename":{"SJAG_00118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00118","name":"mid2delta","uniquename":"SJAG_00118:allele-1"},"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_04551:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04551","name":"pmk1delta","uniquename":"SJAG_04551:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115329],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000118"}],"single_locus_phenotype":[{"annotations":[115379],"is_not":false,"summary":null,"term":"FYPO:0004295"},{"annotations":[115318,115319],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000118"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype characterized by the presence of more than one septum in a cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component","termid":"FYPO:0000287"},{"relation_name":"is_a","term_name":"septated cell","termid":"FYPO:0004296"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00118":null,"SJAG_01143":null,"SJAG_04551":null},"genotype_count":4,"genotypes_by_uniquename":{"mid1delta":{"display_name":"mid1delta","display_uniquename":"mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},"mid1delta__mid2delta":{"display_name":"mid1delta mid2delta","display_uniquename":"mid1delta__mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]},"mid2delta":{"display_name":"mid2delta","display_uniquename":"mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]},"pmk1delta":{"display_name":"pmk1delta","display_uniquename":"pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_00118","SJAG_01143"],"name":"multiseptate cell","references_by_uniquename":{"PMID:25866389":null,"PMID:34198697":null},"single_locus_annotated_genes":["SJAG_01143","SJAG_00118","SJAG_04551"],"single_locus_genotype_uniquenames":["mid2delta","mid1delta","pmk1delta"],"termid":"FYPO:0004295","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000207":null,"FYPO:0000118":null,"FYPO:0004295":null,"FYPO_EXT:0000002":null}}


id: PBO:0055555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2991","termid":"PBO:0055555"}


id: SO:0000541
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one C-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"C_gene_segment","termid":"SO:0000478"},{"relation_name":"has_part","term_name":"VDJ_gene_segment","termid":"SO:0000574"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VDJ_C_cluster","synonyms":[{"name":"(VDJ)-C-CLUSTER","type":"exact"},{"name":"VDJ C cluster","type":"exact"}],"termid":"SO:0000541"}


id: PBO:0042220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCNQ pseudogene 1","termid":"PBO:0042220"}


id: PBO:0027536
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_ATP-dependent_5'-3'_DNA_helicase_activity","termid":"PBO:0027536"}


id: FYPO:0007663
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the kinetochore of a chromosome does not occur during the second meiotic nuclear division.","definition_xrefs":["PomBase:mah","PMID:11331883"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to kinetochore during meiosis","termid":"FYPO:0004762"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to kinetochore during meiosis II","synonyms":[{"name":"abolished protein localisation to kinetochore during meiosis II","type":"exact"},{"name":"abolished protein localisation to kinetochore during second meiotic nuclear division","type":"exact"}],"termid":"FYPO:0007663"}


id: PBO:0042109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 182","termid":"PBO:0042109"}


id: GO:0070402
data:
  {"annotated_genes":["SJAG_03476","SJAG_02488","SJAG_03115"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99057,110706,110794],"is_not":false,"summary":null,"term":"GO:0070402"}]},"cv_name":"molecular_function","definition":"Binding to the reduced form, NADPH, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"},{"relation_name":"is_a","term_name":"NADP binding","termid":"GO:0050661"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02488":null,"SJAG_03115":null,"SJAG_03476":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"NADPH binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"NADP (reduced) binding","type":"exact"},{"name":"reduced NADP binding","type":"exact"},{"name":"reduced nicotinamide adenine dinucleotide phosphate binding","type":"exact"}],"termid":"GO:0070402","terms_by_termid":{"GO:0070402":null}}


id: PBO:0063780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHF5A pseudogene 7","termid":"PBO:0063780"}


id: GO:1904154
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of retrograde protein transport, ER to cytosol.","definition_xrefs":["GOC:bf","PMID:18555783","GOC:PARL","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein exit from endoplasmic reticulum","termid":"GO:0070863"},{"relation_name":"is_a","term_name":"regulation of retrograde protein transport, ER to cytosol","termid":"GO:1904152"},{"relation_name":"positively_regulates","term_name":"retrograde protein transport, ER to cytosol","termid":"GO:0030970"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of retrograde protein transport, ER to cytosol","synonyms":[{"name":"activation of protein dislocation from ER","type":"narrow"},{"name":"activation of retrograde protein transport, ER to cytosol","type":"narrow"},{"name":"activation of retrograde protein transport, endoplasmic reticulum to cytosol","type":"narrow"},{"name":"positive regulation of protein dislocation from ER","type":"exact"},{"name":"positive regulation of protein retrotranslocation from ER","type":"exact"},{"name":"positive regulation of retrograde protein transport, endoplasmic reticulum to cytosol","type":"exact"},{"name":"up regulation of protein dislocation from ER","type":"exact"},{"name":"up regulation of retrograde protein transport, ER to cytosol","type":"exact"},{"name":"up regulation of retrograde protein transport, endoplasmic reticulum to cytosol","type":"exact"},{"name":"up-regulation of protein dislocation from ER","type":"exact"},{"name":"up-regulation of protein retrotranslocation from ER","type":"exact"},{"name":"up-regulation of retrograde protein transport, ER to cytosol","type":"exact"},{"name":"up-regulation of retrograde protein transport, endoplasmic reticulum to cytosol","type":"exact"},{"name":"upregulation of protein dislocation from ER","type":"exact"},{"name":"upregulation of retrograde protein transport, ER to cytosol","type":"exact"},{"name":"upregulation of retrograde protein transport, endoplasmic reticulum to cytosol","type":"exact"}],"termid":"GO:1904154"}


id: FYPO:0001297
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of palmitoyl-CoA ligase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal long-chain fatty acid-CoA ligase activity","termid":"FYPO:0001305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000707","FYPO:0005447","FYPO:0001985","FYPO:0000661","FYPO:0000002","FYPO:0000652"],"is_obsolete":false,"name":"abnormal palmitoyl-CoA ligase activity","synonyms":[{"name":"abnormal palmitoyl-CoA synthetase activity","type":"exact"}],"termid":"FYPO:0001297"}


id: PR:P36613
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cyclin-H that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03043","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin mcs2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP16F5.02","secondary_identifiers":["UniProtKB:P36613"],"synonyms":[{"name":"Spom972h-CCNH","type":"exact"},{"name":"mitotic catastrophe suppressor 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P36613"}


id: PBO:0001864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S2 (predicted)","termid":"PBO:0001864"}


id: PBO:0031120
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_spontaneous_diploidization","termid":"PBO:0031120"}


id: PBO:0051807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IQ motif and Sec7 domain 3 pseudogene 1","termid":"PBO:0051807"}


id: GO:0006083
data:
  {"annotated_genes":["SJAG_03786","SJAG_02741","SJAG_01989","SJAG_02769","SJAG_02985"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75523,87485,110349],"is_not":false,"summary":null,"term":"GO:0006083"},{"annotations":[96888],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019413"},{"annotations":[112102],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019427"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving acetate, the anion of acetic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01989":null,"SJAG_02741":null,"SJAG_02769":null,"SJAG_02985":null,"SJAG_03786":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"acetate metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"acetate metabolism","type":"exact"}],"termid":"GO:0006083","terms_by_termid":{"GO:0006083":null,"GO:0019413":null,"GO:0019427":null}}


id: PBO:0031507
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cellular_response_to_starvation","termid":"PBO:0031507"}


id: GO:0071560
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a transforming growth factor beta stimulus.","definition_xrefs":["PMID:15451575","GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to growth factor stimulus","termid":"GO:0071363"},{"relation_name":"is_a","term_name":"response to transforming growth factor beta","termid":"GO:0071559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to transforming growth factor beta stimulus","synonyms":[{"name":"cellular response to TGF-beta stimulus","type":"exact"},{"name":"cellular response to TGFbeta stimulus","type":"exact"}],"termid":"GO:0071560"}


id: GO:0005130
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a granulocyte colony-stimulating factor receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"},{"relation_name":"is_a","term_name":"growth factor receptor binding","termid":"GO:0070851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"granulocyte colony-stimulating factor receptor binding","synonyms":[{"name":"G-CSF receptor ligand","type":"exact"},{"name":"GC-SF receptor ligand","type":"exact"},{"name":"granulocyte colony stimulating factor receptor binding","type":"exact"},{"name":"granulocyte colony-stimulating factor","type":"narrow"},{"name":"granulocyte colony-stimulating factor receptor ligand","type":"narrow"}],"termid":"GO:0005130"}


id: PBO:0067264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 338, pseudogene","termid":"PBO:0067264"}


id: MOD:01477
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-phenylalanine residue to an 3'-fluoro-L-fluorophenylalanine.","definition_xrefs":["PubMed:18688235","PubMed:8172898"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monofluorinated L-phenylalanine","termid":"MOD:01227"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-fluoro-L-phenylalanine","synonyms":[{"name":"3-fluorophenylalanine","type":"exact"},{"name":"m-fluorophenylalanine","type":"exact"},{"name":"meta-fluorophenylalanine","type":"exact"}],"termid":"MOD:01477"}


id: PBO:0068286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease H2 subunit C","termid":"PBO:0068286"}


id: PBO:0083831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ethanolamine kinase; primarily responsible for phosphatidylethanolamine synthesis via the CDP-ethanolamine pathway; exhibits some choline kinase activity, thus contributing to phosphatidylcholine synthesis via the CDP-choline pathway; EKI1 has a paralog, CKI1, that arose from the whole genome duplication","termid":"PBO:0083831"}


id: GO:0006690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving icosanoids, any of a group of C20 polyunsaturated fatty acids.","definition_xrefs":["GOC:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"icosanoid metabolic process","synonyms":[{"name":"eicosanoid metabolic process","type":"exact"},{"name":"eicosanoid metabolism","type":"exact"},{"name":"icosanoid metabolism","type":"exact"}],"termid":"GO:0006690"}


id: PBO:0079806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP glucuronosyltransferase family 2 member B27, pseudogene","termid":"PBO:0079806"}


id: GO:1990596
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by the removal of an acetyl group from lysine at position 4 of the histone.","definition_xrefs":["PMID:20299449"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K4 deacetylation (obsolete GO:1990596)","termid":"GO:1990596"}


id: PBO:0084466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAP kinase-responsive inhibitor of the Ste12p transcription factor; involved in the regulation of mating-specific genes and the invasive growth pathway; related regulators Dig1p and Dig2p bind to Ste12p; DIG2 has a paralog, DIG1, that arose from the whole genome duplication","termid":"PBO:0084466"}


id: GO:0005828
data:
  {"annotated_genes":["SJAG_00918"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[103499],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990941"}]},"cv_name":"cellular_component","definition":"Any of the spindle microtubules that attach to the kinetochores of chromosomes by their plus ends, and maneuver the chromosomes during mitotic or meiotic chromosome segregation.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle microtubule","termid":"GO:0005876"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00918":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0015630","GO:0005575"],"is_obsolete":false,"name":"kinetochore microtubule","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pole-to-kinetochore microtubule","type":"exact"}],"termid":"GO:0005828","terms_by_termid":{"GO:1990941":null}}


id: GO:0043288
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving apocarotenoids, a class of compounds derived from the oxidative cleavage of carotenoids, many of which are biologically important e.g. retinal and abscisic acid.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprenoid metabolic process","termid":"GO:0006720"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"apocarotenoid metabolic process","synonyms":[{"name":"apo carotenoid metabolic process","type":"exact"},{"name":"apocarotenoid metabolism","type":"exact"}],"termid":"GO:0043288"}


id: FYPO:0004596
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of the initiation of DNA-dependent DNA replication is abnormal, with replication reinitiating during G2 phase of the mitotic cell cycle and resulting in one or more rounds of rereplication of the entire genome.","definition_xrefs":["PomBase:mah","PMID:11532929"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal negative regulation of mitotic DNA replication initiation resulting in complete rereplication","termid":"FYPO:0001425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000631"],"is_obsolete":false,"name":"abnormal negative regulation of DNA replication initiation during mitotic G2 phase resulting in complete rereplication","synonyms":[{"name":"abnormal negative regulation of DNA replication initiation during G2 phase resulting in complete rereplication during mitotic cell cycle","type":"related"},{"name":"abnormal negative regulation of DNA replication initiation during mitotic G2 phase during vegetative growth, resulting in complete rereplication","type":"exact"},{"name":"abnormal negative regulation of DNA replication initiation during mitotic G2 phase resulting in complete re-replication","type":"exact"},{"name":"abnormal negative regulation of DNA-dependent DNA replication initiation during mitotic G2 phase resulting in complete rereplication","type":"exact"}],"termid":"FYPO:0004596"}


id: PBO:0111941
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-RBZ","termid":"PBO:0111941"}


id: PBO:0044469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 7 subfamily B member 1","termid":"PBO:0044469"}


id: PBO:0058986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MLLT10 histone lysine methyltransferase DOT1L cofactor","termid":"PBO:0058986"}


id: PR:Q10434
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An F-actin-capping protein subunit alpha-2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-actin-capping protein subunit alpha (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC12B10.07","secondary_identifiers":["UniProtKB:Q10434"],"synonyms":[{"name":"SPAC12B10.07","type":"related"},{"name":"Spom972h-CAPZA2","type":"exact"}],"termid":"PR:Q10434"}


id: GO:0062120
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components during meiotic prophase to form a LinE complex, the protein complex that associates with chromatin to form linear elements in fission yeast. In S. pombe, the LinE complex contains four main structural components (Rec10, Rec25, Rec27, and Mug20) and other associated proteins.","definition_xrefs":["PMID:30640914"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"linear element assembly","termid":"GO:0030999"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0007049","GO:0008150","GO:0140013"],"is_obsolete":false,"name":"LinE complex assembly","termid":"GO:0062120"}


id: PBO:0058639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6770-1","termid":"PBO:0058639"}


id: PBO:0075619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sepiapterin reductase","termid":"PBO:0075619"}


id: PBO:0031161
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_threonine_import","termid":"PBO:0031161"}


id: GO:0120285
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to and responding, e.g. by conformational change, to changes in the cellular level of tyrosine.","definition_xrefs":["PMID:31498992","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid sensor activity","termid":"GO:0140785"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140299"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0140299"],"is_obsolete":false,"name":"tyrosine sensor activity","synonyms":[{"name":"tyrosine sensing activity","type":"exact"}],"termid":"GO:0120285"}


id: PBO:0065540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatase and tensin homolog pseudogene 1","termid":"PBO:0065540"}


id: PBO:0065584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prothymosin alpha","termid":"PBO:0065584"}


id: PR:Q09804
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- urb2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09804"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar pre-ribosomal-associated protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2G11.02","synonyms":[{"name":"Spom972h-urb2","type":"exact"},{"name":"ribosome biogenesis protein urb2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09804"}


id: PBO:0042423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle 27 pseudogene 7","termid":"PBO:0042423"}


id: PBO:0091948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyridoxal reductase","termid":"PBO:0091948"}


id: PBO:0046388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E1A binding protein p300","termid":"PBO:0046388"}


id: FYPO:0003008
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of transcription from RNA polymerase II promoter occurs to a lower extent than normal during a cellular response to zinc. Specific genes are more highly transcribed in the presence of zinc in the mutant than in wild type.","definition_xrefs":["PMID:22496451","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal negative regulation of transcription during vegetative growth","termid":"FYPO:0000624"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0006551","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased repression of transcription during cellular response to zinc","synonyms":[{"name":"decreased negative regulation of transcription from RNA polymerase II promoter during cellular response to zinc","type":"exact"},{"name":"decreased repression of transcription during cellular response to zinc during mitotic cell cycle","type":"related"},{"name":"decreased repression of transcription during cellular response to zinc during vegetative growth","type":"exact"},{"name":"decreased transcriptional repression during cellular response to zinc","type":"exact"},{"name":"reduced repression of transcription during cellular response to zinc","type":"exact"}],"termid":"FYPO:0003008"}


id: PBO:0041592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbonic anhydrase 5A pseudogene 1","termid":"PBO:0041592"}


id: PBO:0074295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretory leukocyte peptidase inhibitor","termid":"PBO:0074295"}


id: GO:0061654
data:
  {"annotated_genes":["SJAG_01018"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[114385],"is_not":false,"summary":null,"term":"GO:0061654"}]},"cv_name":"molecular_function","definition":"Isoenergetic transfer of NEDD8 from one protein to another via the reaction X-NEDD8 + Y = Y-NEDD8 + X, where both the X-NEDD8 and Y-NEDD8 linkages are thioester bonds between the C-terminal amino acid of NEDD8 and a sulfhydryl side group of a cysteine residue.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NEDD8 transferase activity","termid":"GO:0019788"},{"relation_name":"is_a","term_name":"ubiquitin-like protein conjugating enzyme activity","termid":"GO:0061650"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0003674","GO:0019787","GO:0016740","GO:0003824","GO:0140096","GO:0016746"],"is_obsolete":false,"name":"NEDD8 conjugating enzyme activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:2.3.2.34"],"synonyms":[{"name":"E2","type":"broad"}],"termid":"GO:0061654","terms_by_termid":{"GO:0061654":null}}


id: PATO:0001955
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being narrowly triangular, wider at the apex and tapering toward the base.","definition_xrefs":["wordreference:wordreference"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triangular","termid":"PATO:0001875"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cuneate","synonyms":[{"name":"wedge-shaped","type":"exact"}],"termid":"PATO:0001955"}


id: GO:0047269
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: poly(ribitol phosphate) + UDP-N-acetyl-D-glucosamine = N-acetyl-D-glucosaminyl-poly(ribitol phosphate) + UDP.","definition_xrefs":["MetaCyc:2.4.1.70-RXN","EC:2.4.1.70"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"poly(ribitol-phosphate) N-acetylglucosaminyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.53-RXN","RHEA:21012"],"synonyms":[{"name":"UDP acetylglucosamine-poly(ribitol phosphate) acetylglucosaminyltransferase activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:poly(ribitol-phosphate) N-acetyl-D-glucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-poly(ribitol phosphate) acetylglucosaminyltransferase activity","type":"related"}],"termid":"GO:0047269"}


id: GO:0103055
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: gibberellin A15 + 2-oxoglutarate + O2 = gibberellin A24 + succinate + carbon dioxide + H2O.","definition_xrefs":["EC:1.14.11.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"gibberelli A15, 2-oxoglutarate:oxygen oxidoreductase activity","secondary_identifiers":["MetaCyc:RXN1F-163","RHEA:60780"],"termid":"GO:0103055"}


id: PBO:0031358
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_benomyl","termid":"PBO:0031358"}


id: PBO:0063724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"progesterone receptor membrane component 2","termid":"PBO:0063724"}


id: PBO:0065246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 18","termid":"PBO:0065246"}


id: PBO:0066000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RALBP1 pseudogene 2","termid":"PBO:0066000"}


id: PBO:0108892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL7L1 pseudogene 5","termid":"PBO:0108892"}


id: PBO:0070478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L5 pseudogene 13","termid":"PBO:0070478"}


id: PBO:0068786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 23, pseudogene","termid":"PBO:0068786"}


id: PBO:0091604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMN complex subunit Gem6","termid":"PBO:0091604"}


id: PR:O42650
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine/threonine-protein kinase RIO1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00494","PANTHER:PTHR10593:SF5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase rio1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC10F6.10","secondary_identifiers":["UniProtKB:O42650"],"synonyms":[{"name":"Spom972h-RIOK1","type":"exact"}],"termid":"PR:O42650"}


id: PBO:0074837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 31B","termid":"PBO:0074837"}


id: PBO:0004800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA exonuclease (predicted)","termid":"PBO:0004800"}


id: FYPO:0006037
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain fewer half-mer polysomes in the cytosol than normal. A half-mer polysome is a complex consisting of an mRNA bound to a single small ribosomal subunit, followed by one or more complete bound ribosomes.","definition_xrefs":["PMID:18611858","PMID:19806183","PMID:26122634","PMID:10462529","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of macromolecular complex during vegetative growth","termid":"FYPO:0003684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased cytosolic half-mer polysome level","synonyms":[{"name":"cytosolic half-mer polysomes present at decreased level","type":"exact"},{"name":"decreased cytosolic half-mer polysome level during mitotic cell cycle","type":"related"},{"name":"decreased cytosolic half-mer polysome level during vegetative growth","type":"exact"},{"name":"decreased cytosolic halfmer polysome level","type":"exact"},{"name":"decreased level of cytosolic half-mer polysomes","type":"related"},{"name":"reduced cytosolic half-mer polysome level","type":"exact"}],"termid":"FYPO:0006037"}


id: FYPO:0009003
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which karyogamy involved in conjugation with cellular fusion does not occur, despite the nuclei and their SPBs coming together.","definition_xrefs":["PMID:36650056","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished nuclear fusion during mating","termid":"FYPO:0000511"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000301"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000301","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished nuclear fusion with normal nuclear congression during mating","synonyms":[{"name":"nuclear congression without nuclear fusion","type":"exact"}],"termid":"FYPO:0009003"}


id: PBO:0003602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial protein, ribosomal subunit L35 (predicted)","termid":"PBO:0003602"}


id: PBO:0066560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of G protein signaling like 1","termid":"PBO:0066560"}


id: GO:0047801
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-cysteine + 2-oxoglutarate = mercaptopyruvate + L-glutamate.","definition_xrefs":["RHEA:17441"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016769","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"L-cysteine transaminase activity","secondary_identifiers":["EC:2.6.1.3","MetaCyc:CYSTEINE-AMINOTRANSFERASE-RXN","Reactome:R-HSA-9012597"],"synonyms":[{"name":"L-cysteine:2-oxoglutarate aminotransferase activity","type":"exact"},{"name":"cysteine aminotransferase activity","type":"broad"},{"name":"cysteine transaminase activity","type":"exact"}],"termid":"GO:0047801"}


id: GO:0016161
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains.","definition_xrefs":["PMID:18390594"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amylase activity","termid":"GO:0016160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0016798","GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"beta-amylase activity","secondary_identifiers":["MetaCyc:RXN-12279","EC:3.2.1.2","MetaCyc:RXN-1827"],"synonyms":[{"name":"4-alpha-D-glucan maltohydrolase activity","type":"related"},{"name":"beta amylase activity","type":"related"},{"name":"glycogenase activity","type":"broad"},{"name":"saccharogen amylase activity","type":"related"}],"termid":"GO:0016161"}


id: PBO:0044066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cystatin 9-like pseudogene 2","termid":"PBO:0044066"}


id: GO:0051646
data:
  {"annotated_genes":["SJAG_00031","SJAG_00368","SJAG_00655","SJAG_03416","SJAG_02384","SJAG_04003","SJAG_02509","SJAG_01741","SJAG_02848"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100655,102582],"is_not":false,"summary":null,"term":"GO:0051646"},{"annotations":[102579,86956],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051654"},{"annotations":[98777],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034643"},{"annotations":[103425,106874,98778,103213,95979],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048312"},{"annotations":[108133],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048311"},{"annotations":[98780],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000001"}]},"cv_name":"biological_process","definition":"Any process in which a mitochondrion or mitochondria are transported to, and/or maintained in, a specific location within the cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle localization","termid":"GO:0051640"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00031":null,"SJAG_00368":null,"SJAG_00655":null,"SJAG_01741":null,"SJAG_02384":null,"SJAG_02509":null,"SJAG_02848":null,"SJAG_03416":null,"SJAG_04003":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"mitochondrion localization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"establishment and maintenance of mitochondria localization","type":"exact"},{"name":"establishment and maintenance of mitochondrion localization","type":"exact"},{"name":"localization of mitochondria","type":"exact"},{"name":"localization of mitochondrion","type":"exact"},{"name":"mitochondria localization","type":"exact"},{"name":"mitochondrial localization","type":"exact"},{"name":"mitochondrion localisation","type":"exact"}],"termid":"GO:0051646","terms_by_termid":{"GO:0000001":null,"GO:0034643":null,"GO:0048311":null,"GO:0048312":null,"GO:0051646":null,"GO:0051654":null}}


id: FYPO:0001991
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that dies without completing cell division.","definition_xrefs":["PomBase:al","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination","termid":"FYPO:0000316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000004"],"is_obsolete":false,"name":"inviable after spore germination, without cell division","synonyms":[{"name":"inviable after spore germination, no cell division","type":"exact"},{"name":"inviable following spore germination, without cell division","type":"exact"},{"name":"inviable germinated spore, without cell division","type":"exact"},{"name":"lethal after spore germination, without cell division","type":"exact"}],"termid":"FYPO:0001991"}


id: MOD:00647
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to either N-acetyl-L-serine, O-acetyl-L-serine, or N,O-diacetyl-L-serine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylated residue","termid":"MOD:00394"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"acetylated L-serine","synonyms":[{"name":"AcSer","type":"exact"}],"termid":"MOD:00647"}


id: MOD:01983
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a glycine residue to N,N-dimethyllglycine.","definition_xrefs":["RESID:AA0620","PubMed:23978223","PubMed:23818633","ChEBI:17724"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated glycine","termid":"MOD:00714"},{"relation_name":"is_a","term_name":"alpha-amino dimethylated residue","termid":"MOD:01686"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N,N-dimethylglycine","synonyms":[{"name":"(dimethylamino)ethanoic acid","type":"exact"},{"name":"1-carboxy-N,N-dimethylaminomethane","type":"exact"},{"name":"2-(dimethylamino)acetic acid","type":"exact"},{"name":"MOD_RES N,N-dimethylglycine","type":"exact"},{"name":"vitamin B16","type":"exact"}],"termid":"MOD:01983"}


id: GO:0048041
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation and bonding together of a set of components to form a focal adhesion, a complex of intracellular signaling and structural proteins that provides a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity.","definition_xrefs":["GOC:mah","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-substrate junction assembly","termid":"GO:0007044"},{"relation_name":"part_of","term_name":"cell-matrix adhesion","termid":"GO:0007160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0007155"],"is_obsolete":false,"name":"focal adhesion assembly","synonyms":[{"name":"adhesion plaque assembly","type":"related"},{"name":"focal adhesion formation","type":"related"}],"termid":"GO:0048041"}


id: GO:0071794
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a CAP-Gly domain of a protein. The CAP_Gly domain is a conserved, glycine-rich domain of about 42 residues found in some cytoskeleton-associated proteins, and features a novel protein fold containing three beta-sheets.","definition_xrefs":["GOC:mah","InterPro:IPR000938"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"CAP-Gly domain binding","termid":"GO:0071794"}


id: GO:0045971
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of juvenile hormone.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular catabolic process","termid":"GO:0031331"},{"relation_name":"is_a","term_name":"positive regulation of juvenile hormone metabolic process","termid":"GO:0045929"},{"relation_name":"is_a","term_name":"regulation of juvenile hormone catabolic process","termid":"GO:0045952"},{"relation_name":"is_a","term_name":"positive regulation of lipid catabolic process","termid":"GO:0050996"},{"relation_name":"positively_regulates","term_name":"juvenile hormone catabolic process","termid":"GO:0006719"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044248","GO:0019748"],"is_obsolete":false,"name":"positive regulation of juvenile hormone catabolic process","synonyms":[{"name":"activation of juvenile hormone catabolic process","type":"narrow"},{"name":"positive regulation of juvenile hormone breakdown","type":"exact"},{"name":"positive regulation of juvenile hormone catabolism","type":"exact"},{"name":"positive regulation of juvenile hormone degradation","type":"exact"},{"name":"stimulation of juvenile hormone catabolic process","type":"narrow"},{"name":"up regulation of juvenile hormone catabolic process","type":"exact"},{"name":"up-regulation of juvenile hormone catabolic process","type":"exact"},{"name":"upregulation of juvenile hormone catabolic process","type":"exact"}],"termid":"GO:0045971"}


id: GO:0061259
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the glomerular mesangial cells of the mesonephros as it progresses from its formation to the mature state.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesonephric mesangial cell differentiation","termid":"GO:0061260"},{"relation_name":"is_a","term_name":"glomerular mesangial cell differentiation","termid":"GO:0072008"},{"relation_name":"part_of","term_name":"mesonephric glomerular mesangium development","termid":"GO:0061247"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric glomerular mesangial cell differentiation","termid":"GO:0061259"}


id: GO:1904628
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phorbol 13-acetate 12-myristate stimulus.","definition_xrefs":["GO_REF:0000071","PMID:2200903","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to lipid","termid":"GO:0071396"},{"relation_name":"is_a","term_name":"cellular response to alcohol","termid":"GO:0097306"},{"relation_name":"is_a","term_name":"cellular response to ketone","termid":"GO:1901655"},{"relation_name":"is_a","term_name":"response to phorbol 13-acetate 12-myristate","termid":"GO:1904627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to phorbol 13-acetate 12-myristate","synonyms":[{"name":"cellular response to TPA","type":"exact"},{"name":"cellular response to phorbol 12-tetradecanoate 13-acetate","type":"exact"},{"name":"cellular response to response to PMA","type":"exact"},{"name":"cellular response to tetradecanoylphorbol acetate","type":"exact"}],"termid":"GO:1904628"}


id: PBO:0042131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil glutamate rich protein 2","termid":"PBO:0042131"}


id: PBO:0085886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; involved in invasive and pseudohyphal growth; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern","termid":"PBO:0085886"}


id: PBO:0074278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLIRP. pseudogene 2","termid":"PBO:0074278"}


id: GO:0070902
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The intramolecular conversion of uridine to pseudouridine in a mitochondrial tRNA molecule.","definition_xrefs":["GOC:mah","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA pseudouridine synthesis","termid":"GO:0031119"},{"relation_name":"is_a","term_name":"mitochondrial tRNA modification","termid":"GO:0070900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0140053"}],"interesting_parent_ids":["GO:0006399","GO:0008150","GO:0140053","GO:0010467"],"is_obsolete":false,"name":"mitochondrial tRNA pseudouridine synthesis","termid":"GO:0070902"}


id: GO:0052687
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (3R)-3-isopropenyl-6-oxoheptanoate + CoA-SH + ATP = H2O + ADP + phosphate + (3R)-3-isopropenyl-6-oxoheptanoyl-CoA.","definition_xrefs":["KEGG_REACTION:R06396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"},{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016874","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"(3R)-3-isopropenyl-6-oxoheptanoate:CoA ligase (ADP-forming) activity","synonyms":[{"name":"3-isopropenyl-6-oxoheptanoyl-CoA synthetase activity","type":"broad"}],"termid":"GO:0052687"}


id: GO:0050346
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: trans-L-3-hydroxyproline = 1-pyrroline-2-carboxylate + H2O + H+.","definition_xrefs":["RHEA:10320","EC:4.2.1.77"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"trans-L-3-hydroxyproline dehydratase activity","secondary_identifiers":["KEGG_REACTION:R04374","MetaCyc:TRANS-L-3-HYDROXYPROLINE-DEHYDRATASE-RXN"],"synonyms":[{"name":"trans-L-3-hydroxyproline hydro-lyase (Delta1-pyrroline 2-carboxylate-forming)","type":"related"},{"name":"trans-L-3-hydroxyproline hydro-lyase activity","type":"related"}],"termid":"GO:0050346"}


id: PBO:0072154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 31","termid":"PBO:0072154"}


id: FYPO:0004735
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the medial cortical nodes is abolished, and the protein is present in the cytoplasm instead.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to medial cortical node","termid":"FYPO:0003919"},{"relation_name":"is_a","term_name":"abolished protein localization to medial cortex, with protein mislocalized to cytoplasm, during vegetative growth","termid":"FYPO:0007027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to medial cortical node, with protein mislocalized to cytoplasm","synonyms":[{"name":"abolished protein localisation to medial cortical node, with protein mislocalised to cytoplasm","type":"exact"},{"name":"abolished protein localization to cortical medial dot, with protein mislocalized to cytoplasm","type":"exact"},{"name":"abolished protein localization to cytokinetic nodes, with protein mislocalized to cytoplasm","type":"related"},{"name":"abolished protein localization to medial cortical node, with protein mislocalized to cytoplasm, during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to medial cortical node, with protein mislocalized to cytoplasm, during vegetative growth","type":"exact"},{"name":"abolished protein localization to medial cortical nodes, with protein mislocalized to cytoplasm","type":"exact"},{"name":"abolished protein recruitment to medial cortical node, with protein mislocalized to cytoplasm","type":"related"},{"name":"protein localization to medial cortical node abolished, with protein mislocalized to cytoplasm","type":"exact"}],"termid":"FYPO:0004735"}


id: PBO:0045078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DLGAP4 antisense RNA 1","termid":"PBO:0045078"}


id: PBO:0043599
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type XXVIII alpha 1 chain","termid":"PBO:0043599"}


id: PBO:0069698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 977, pseudogene","termid":"PBO:0069698"}


id: GO:0000020
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of genetic recombination within the DNA of the genes coding for ribosomal RNA.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of recombination within rDNA repeats (obsolete GO:0000020)","synonyms":[{"name":"negative regulation of recombination within rDNA repeats","type":"exact"}],"termid":"GO:0000020"}


id: GO:1901771
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of daunorubicin.","definition_xrefs":["UniPathway:UPA00054","GOC:TermGenie","GOC:yaf","PMID:7601857"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyketide biosynthetic process","termid":"GO:0030639"},{"relation_name":"is_a","term_name":"aminoglycoside antibiotic biosynthetic process","termid":"GO:0030648"},{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"daunorubicin metabolic process","termid":"GO:0044597"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0019748","GO:0008150"],"is_obsolete":false,"name":"daunorubicin biosynthetic process","synonyms":[{"name":"daunorubicin anabolism","type":"exact"},{"name":"daunorubicin biosynthesis","type":"exact"},{"name":"daunorubicin formation","type":"exact"},{"name":"daunorubicin synthesis","type":"exact"}],"termid":"GO:1901771"}


id: FYPO:0006566
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a normal proportion of cells in the population remains viable under conditions of sulfur starvation.","definition_xrefs":["PomBase:mah","PMID:9372444"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"},{"relation_name":"is_a","term_name":"cell population viability","termid":"FYPO:0002057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0000257","FYPO:0000003"],"is_obsolete":false,"name":"normal viability upon sulfur starvation","synonyms":[{"name":"normal cell population viability upon sulfur starvation","type":"exact"},{"name":"normal viability upon sulphur starvation","type":"exact"}],"termid":"FYPO:0006566"}


id: PBO:0111900
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-HIT","termid":"PBO:0111900"}


id: GO:1902345
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of maltose transport.","definition_xrefs":["GOC:TermGenie","GOC:dph","PMID:23770568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"regulation of maltose transport","termid":"GO:1902343"},{"relation_name":"positively_regulates","term_name":"maltose transport","termid":"GO:0015768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of maltose transport","synonyms":[{"name":"activation of maltose transport","type":"narrow"},{"name":"up regulation of maltose transport","type":"exact"},{"name":"up-regulation of maltose transport","type":"exact"},{"name":"upregulation of maltose transport","type":"exact"}],"termid":"GO:1902345"}


id: PBO:0000321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF3m","termid":"PBO:0000321"}


id: PBO:0005511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoside diphosphatase Ynd1","termid":"PBO:0005511"}


id: GO:0043995
data:
  {"annotated_genes":["SJAG_00676"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84504],"is_not":false,"summary":null,"term":"GO:0043995"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + histone H4 L-lysine (position 5) = CoA + histone H4 N6-acetyl-L-lysine (position 5).","definition_xrefs":["PMID:18552846","PMID:19056256"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H4 acetyltransferase activity","termid":"GO:0010485"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00676":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0034212"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0003674","GO:0140096","GO:0034212","GO:0016740"],"is_obsolete":false,"name":"histone H4K5 acetyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"histone acetylase activity (H4-K5 specific)","type":"exact"},{"name":"histone acetyltransferase activity (H4-K5 specific)","type":"exact"},{"name":"histone lysine N-acetyltransferase activity (H4-K5 specific)","type":"exact"}],"termid":"GO:0043995","terms_by_termid":{"GO:0043995":null}}


id: PBO:0001468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retromer complex subunit Vps26","termid":"PBO:0001468"}


id: PBO:0087648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex; complex is heme-activated and glucose repressed; complex is a transcriptional activator and global regulator of respiratory gene expression; required for assembly and DNA binding activity of the complex","termid":"PBO:0087648"}


id: PBO:0045813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 3","termid":"PBO:0045813"}


id: PBO:0051481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable (VI)-22-1 (pseudogene)","termid":"PBO:0051481"}


id: GO:1901525
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of mitophagy.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of macroautophagy","termid":"GO:0016242"},{"relation_name":"is_a","term_name":"regulation of mitophagy","termid":"GO:1901524"},{"relation_name":"is_a","term_name":"negative regulation of autophagy of mitochondrion","termid":"GO:1903147"},{"relation_name":"negatively_regulates","term_name":"mitophagy","termid":"GO:0000423"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006914"},{"rel_name":"negatively_regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"negatively_regulates","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007005"},{"rel_name":"negatively_regulates","termid":"GO:0006914"}],"interesting_parent_ids":["GO:0007005","GO:0006914","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"negative regulation of mitophagy","synonyms":[{"name":"down regulation of macromitophagy","type":"exact"},{"name":"down-regulation of macromitophagy","type":"exact"},{"name":"downregulation of macromitophagy","type":"exact"},{"name":"inhibition of macromitophagy","type":"narrow"},{"name":"negative regulation of macromitophagy","type":"exact"}],"termid":"GO:1901525"}


id: PBO:0086714
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; mutant is deficient in cell wall mannosylphosphate and has long chronological lifespan; genetic interactions suggest a role in ER-associated protein degradation (ERAD); SWAT-GFP fusion protein localizes to the endoplasmic reticulum and vacuole, while mCherry fusion localizes to just the vacuole","termid":"PBO:0086714"}


id: PR:O59779
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC1235.01 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59779"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1235.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1235.01","synonyms":[{"name":"Spom972h-SPCC1235.01","type":"exact"}],"termid":"PR:O59779"}


id: GO:0000145
data:
  {"annotated_genes":["SJAG_02753","SJAG_04960","SJAG_03357","SJAG_03864","SJAG_02320","SJAG_01925","SJAG_04044","SJAG_03938","SJAG_02166"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[84693,86801,95568,97935,109875,110157,111640,113722,114818],"is_not":false,"summary":null,"term":"GO:0000145"}]},"cv_name":"cellular_component","definition":"A protein complex peripherally associated with the plasma membrane that determines where vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals.","definition_xrefs":["GOC:cilia","PMID:27243008","PMID:15292201","PMID:9700152"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle tethering complex","termid":"GO:0099023"},{"relation_name":"part_of","term_name":"cell cortex","termid":"GO:0005938"}],"gene_count":9,"genes_by_uniquename":{"SJAG_01925":null,"SJAG_02166":null,"SJAG_02320":null,"SJAG_02753":null,"SJAG_03357":null,"SJAG_03864":null,"SJAG_03938":null,"SJAG_04044":null,"SJAG_04960":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005938"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005938","GO:0005737"],"is_obsolete":false,"name":"exocyst","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Exocyst"],"synonyms":[{"name":"Sec6/8 complex","type":"exact"},{"name":"exocyst complex","type":"exact"}],"termid":"GO:0000145","terms_by_termid":{"GO:0000145":null}}


id: PBO:0054239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1621","termid":"PBO:0054239"}


id: GO:0031314
data:
  {"annotated_genes":["SJAG_00230","SJAG_00576","SJAG_00852","SJAG_03563","SJAG_01249","SJAG_05398","SJAG_00721","SJAG_04642","SJAG_03456","SJAG_04000","SJAG_01043","SJAG_00933"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[85697,86931,97299,99250,102200,102855,104166,105506,110871,113100],"is_not":false,"summary":null,"term":"GO:0031314"},{"annotations":[99777,96477],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0099616"}]},"cv_name":"cellular_component","definition":"The component of mitochondrial inner membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:dos","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of organelle membrane","termid":"GO:0031312"},{"relation_name":"part_of","term_name":"mitochondrial inner membrane","termid":"GO:0005743"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00230":null,"SJAG_00576":null,"SJAG_00721":null,"SJAG_00852":null,"SJAG_00933":null,"SJAG_01043":null,"SJAG_01249":null,"SJAG_03456":null,"SJAG_03563":null,"SJAG_04000":null,"SJAG_04642":null,"SJAG_05398":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005739"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0005739"],"is_obsolete":false,"name":"extrinsic component of mitochondrial inner membrane","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"extrinsic to mitochondrial inner membrane","type":"narrow"}],"termid":"GO:0031314","terms_by_termid":{"GO:0031314":null,"GO:0099616":null}}


id: FYPO:0007172
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which the proportion of cells in the population remains viable after entering stationary phase does not change in the presence of micafungin. Normally, wild-type cell populations survive longer in the presence of micafungin than in its absence.","definition_xrefs":["PMID:31601154","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population phenotype","termid":"FYPO:0000003"},{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"stationary phase viability unaffected by micafungin","synonyms":[{"name":"chronological lifespan unaffected by micafungin","type":"related"},{"name":"loss of chronological lifespan extension by micafungin","type":"related"},{"name":"loss of stationary phase viability extension in presence of micafungin","type":"exact"}],"termid":"FYPO:0007172"}


id: PBO:0060607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NCBP2 antisense RNA 1","termid":"PBO:0060607"}


id: GO:0060997
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a dendritic spine are generated and organized. A dendritic spine is a protrusion from a dendrite and a specialized subcellular compartment involved in synaptic transmission.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron projection development","termid":"GO:0031175"},{"relation_name":"is_a","term_name":"neuron projection morphogenesis","termid":"GO:0048812"},{"relation_name":"is_a","term_name":"dendritic spine organization","termid":"GO:0097061"},{"relation_name":"part_of","term_name":"dendrite morphogenesis","termid":"GO:0048813"},{"relation_name":"part_of","term_name":"dendritic spine development","termid":"GO:0060996"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dendritic spine morphogenesis","termid":"GO:0060997"}


id: GO:0086092
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cardiac conduction process that modulates the extent of heart contraction, changing the force with which blood is propelled.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of the force of heart contraction","termid":"GO:0002026"},{"relation_name":"is_a","term_name":"cardiac conduction","termid":"GO:0061337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of the force of heart contraction by cardiac conduction","termid":"GO:0086092"}


id: GO:0044523
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that begins with venom being forced into an organism by the bite or sting of another organism, damaging the extracellular matrix of muscle cells and ultimately resulting in muscle necrosis in the bitten organism.","definition_xrefs":["PMID:21150580","GOC:fj","PMID:20398688","PMID:33460638","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation resulting in muscle damage in another organism","termid":"GO:0044521"},{"relation_name":"is_a","term_name":"disruption of extracellular matrix of another organism","termid":"GO:0141041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in damage of muscle extracellular matrix in another organism","synonyms":[{"name":"envenomation resulting in damage of muscle extracellular matrix causing muscle necrosis in other organism","type":"exact"},{"name":"envenomation resulting in damage of muscle extracellular matrix in other organism","type":"exact"}],"termid":"GO:0044523"}


id: GO:0034512
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a box C/D small nucleolar RNA.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snoRNA binding","termid":"GO:0030515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003723","GO:0005488"],"is_obsolete":false,"name":"box C/D sno(s)RNA binding","synonyms":[{"name":"box C/D sRNA binding","type":"narrow"},{"name":"box C/D snoRNA binding","type":"narrow"}],"termid":"GO:0034512"}


id: PR:O74564
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- wtf9 gene.","definition_xrefs":["UniProtKB:O74564","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein wtf9 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC970.11c","synonyms":[{"name":"Spom972h-wtf9","type":"exact"}],"termid":"PR:O74564"}


id: GO:0032138
data:
  {"annotated_genes":["SJAG_00634","SJAG_02226"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[102072],"is_not":false,"summary":null,"term":"GO:0032138"},{"annotations":[94216],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032141"}]},"cv_name":"molecular_function","definition":"Binding to a double-stranded DNA region containing a single base insertion or deletion.","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA insertion or deletion binding","termid":"GO:0032135"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00634":null,"SJAG_02226":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003677","GO:0005488"],"is_obsolete":false,"name":"single base insertion or deletion binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"single base insertion binding","type":"narrow"}],"termid":"GO:0032138","terms_by_termid":{"GO:0032138":null,"GO:0032141":null}}


id: PBO:0085667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in nucleotide excision repair; green fluorescent protein (GFP)-fusion protein localizes to the nucleus","termid":"PBO:0085667"}


id: GO:0006372
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:krc"],"gene_count":0,"genotype_count":0,"name":"obsolete lariat formation, 5'-splice site cleavage (obsolete GO:0006372)","synonyms":[{"name":"lariat formation, 5'-splice site cleavage","type":"exact"}],"termid":"GO:0006372"}


id: FYPO:0003972
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which exit from mitosis is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitosis","termid":"FYPO:0000337"},{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle phase transition","termid":"FYPO:0005275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000337","FYPO:0005447","FYPO:0000631","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal exit from mitosis","synonyms":[{"name":"abnormal exit from mitosis during mitotic cell cycle","type":"related"},{"name":"abnormal exit from mitosis during vegetative growth","type":"exact"},{"name":"abnormal mitotic exit","type":"exact"}],"termid":"FYPO:0003972"}


id: PBO:0077746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOG array regulator of axonemal microtubules 1","termid":"PBO:0077746"}


id: GO:0055089
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the maintenance of an internal steady state of fatty acid within an organism or cell.","definition_xrefs":["GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid homeostasis","termid":"GO:0055088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fatty acid homeostasis","termid":"GO:0055089"}


id: FYPO:0006492
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which chitin synthase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal chitin synthase activity","termid":"FYPO:0006491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000661","FYPO:0000654","FYPO:0000652"],"is_obsolete":false,"name":"abolished chitin synthase activity","synonyms":[{"name":"chitin synthase activity abolished","type":"exact"}],"termid":"FYPO:0006492"}


id: FYPO:0009008
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population phenotype in which a larger than normal proportion of cells is viable. In High Throughput Phenotyping this is typically assessed using phloxine as a dye.","definition_xrefs":["PMID:34984977","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population viability","termid":"FYPO:0002057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"increased vegetative cell population viability","synonyms":[{"name":"increased cell population viability during vegetative growth","type":"exact"}],"termid":"FYPO:0009008"}


id: PBO:0111438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar proton/calcium exchanger Vcx1","termid":"PBO:0111438"}


id: PBO:0062615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily V member 3 pseudogene","termid":"PBO:0062615"}


id: GO:0043532
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to angiostatin, a proteolytic product of plasminogen or plasmin containing at least one intact kringle domain, and which is an inhibitor of angiogenesis.","definition_xrefs":["PMID:16043488"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"angiostatin binding","termid":"GO:0043532"}


id: GO:0033994
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (1->4)-beta-D-glucuronan = an oligosaccharide with 4-deoxy-beta-D-gluc-4-enuronosyl end + (1->4)-beta-D-glucuronan. This reaction is the eliminative cleavage of (1->4)-beta-D-glucuronans to give oligosaccharides with 4-deoxy-beta-D-gluc-4-enuronosyl groups at their non-reducing ends. Complete degradation of glucuronans results in the formation of tetrasaccharides.","definition_xrefs":["EC:4.2.2.14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"glucuronan lyase activity","secondary_identifiers":["MetaCyc:4.2.2.14-RXN"],"synonyms":[{"name":"(1,4)-beta-D-glucuronan lyase activity","type":"related"}],"termid":"GO:0033994"}


id: PBO:0070202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 127 pseudogene","termid":"PBO:0070202"}


id: PBO:0005137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CUE domain protein Cue1/4 family involved in ER associated protein catabolism (predicted)","termid":"PBO:0005137"}


id: GO:0033025
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of mast cell apoptotic process.","definition_xrefs":["GOC:add","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of immune system process","termid":"GO:0002682"},{"relation_name":"is_a","term_name":"regulation of myeloid cell apoptotic process","termid":"GO:0033032"},{"relation_name":"is_a","term_name":"regulation of leukocyte apoptotic process","termid":"GO:2000106"},{"relation_name":"regulates","term_name":"mast cell apoptotic process","termid":"GO:0033024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mast cell apoptotic process","synonyms":[{"name":"regulation of mast cell apoptosis","type":"narrow"}],"termid":"GO:0033025"}


id: GO:0097135
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex consisting of cyclin E2 and cyclin-dependent kinase 2 (CDK2). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner.","definition_xrefs":["GOC:so","PMID:15935619"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent protein kinase holoenzyme complex","termid":"GO:0000307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"cyclin E2-CDK2 complex","termid":"GO:0097135"}


id: GO:0102047
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: indole-3-acetate + glycine + ATP(4-) = H+ + indole-3-acetyl-glycine + AMP(2-) + diphosphoric acid.","definition_xrefs":["GOC:pz","PMID:15659623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-nitrogen bonds","termid":"GO:0016879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016874","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"indole-3-acetyl-glycine synthetase activity","secondary_identifiers":["MetaCyc:RXN-10429"],"termid":"GO:0102047"}


id: PR:Q09921
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1F7.10 gene.","definition_xrefs":["UniProtKB:Q09921","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1F7.10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F7.10","synonyms":[{"name":"Spom972h-SPAC1F7.10","type":"exact"}],"termid":"PR:Q09921"}


id: PBO:0085780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of the endoplasmic reticulum; required for GPI-phospholipase A2 activity that remodels the GPI anchor as a prerequisite for association of GPI-anchored proteins with lipid rafts; functionally complemented by human ortholog PERLD1","termid":"PBO:0085780"}


id: PBO:0046784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EYA transcriptional coactivator and phosphatase 4","termid":"PBO:0046784"}


id: PBO:0067870
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 172","termid":"PBO:0067870"}


id: PBO:0064687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 23","termid":"PBO:0064687"}


id: PR:000050517
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A SNF1-like protein kinase ssp2 (Schizosaccharomyces pombe) that has been phosphorylated at the position equivalent to Thr-189 of the amino acid sequence represented by UniProtKB:O74536. Example: UniProtKB:O74536, Thr-189, MOD:00047.","definition_xrefs":["PMID:22375066","PomBase:VW","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SNF1-like protein kinase ssp2 (Schizosaccharomyces pombe)","termid":"PR:000050516"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ssp2/Phos(T189)","pombase_gene_id":"SPCC74.03c","synonyms":[{"name":"PomBase_original_PRO_term_name: SNF1-like protein kinase ssp2 phosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-ssp2/Phos:1","type":"exact"},{"name":"UniProtKB:O74536, Thr-189, MOD:00047","type":"narrow"},{"name":"ssp2/Phos(T189)","type":"exact"}],"termid":"PR:000050517"}


id: PBO:0072517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 46","termid":"PBO:0072517"}


id: PBO:0051063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy diversity 4-4","termid":"PBO:0051063"}


id: PBO:0060449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear assembly factor 1 ribonucleoprotein","termid":"PBO:0060449"}


id: PBO:0003406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extender of the chronological lifespan protein Ecl2","termid":"PBO:0003406"}


id: GO:0032307
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of a prostaglandin from a cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of icosanoid secretion","termid":"GO:0032304"},{"relation_name":"is_a","term_name":"regulation of prostaglandin secretion","termid":"GO:0032306"},{"relation_name":"is_a","term_name":"negative regulation of secretion by cell","termid":"GO:1903531"},{"relation_name":"negatively_regulates","term_name":"prostaglandin secretion","termid":"GO:0032310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of prostaglandin secretion","synonyms":[{"name":"down regulation of prostaglandin secretion","type":"exact"},{"name":"down-regulation of prostaglandin secretion","type":"exact"},{"name":"downregulation of prostaglandin secretion","type":"exact"},{"name":"inhibition of prostaglandin secretion","type":"narrow"},{"name":"negative regulation of prostacyclin secretion","type":"narrow"}],"termid":"GO:0032307"}


id: PR:O94642
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tRNA-specific adenosine deaminase 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11079:SF9","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-specific adenosine deaminase subunit tad2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16D10.10","secondary_identifiers":["UniProtKB:O94642"],"synonyms":[{"name":"SPBC16D10.10","type":"related"},{"name":"Spom972h-ADAT2","type":"exact"},{"name":"tRNA-specific adenosine-34 deaminase subunit tad2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94642"}


id: PBO:0070467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L5 pseudogene 2","termid":"PBO:0070467"}


id: PBO:0039855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 21","termid":"PBO:0039855"}


id: PBO:0065104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase cAMP-dependent type II regulatory subunit beta","termid":"PBO:0065104"}


id: GO:0050021
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-arabinono-1,4-lactone + H2O = L-arabinonate + H+.","definition_xrefs":["RHEA:16217","EC:3.1.1.15"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0016788","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"L-arabinonolactonase activity","secondary_identifiers":["MetaCyc:L-ARABINONOLACTONASE-RXN","KEGG_REACTION:R02526"],"synonyms":[{"name":"L-arabinono-1,4-lactone lactonohydrolase activity","type":"related"}],"termid":"GO:0050021"}


id: PBO:0059449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MSANTD2 antisense RNA 1","termid":"PBO:0059449"}


id: GO:1903844
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellular response to transforming growth factor beta stimulus.","definition_xrefs":["GOC:BHF","GOC:BHF_miRNA","GOC:rph","GOC:TermGenie","PMID:22269326","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular response to growth factor stimulus","termid":"GO:0090287"},{"relation_name":"regulates","term_name":"cellular response to transforming growth factor beta stimulus","termid":"GO:0071560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular response to transforming growth factor beta stimulus","synonyms":[{"name":"regulation of cellular response to TGF-beta stimulus","type":"exact"},{"name":"regulation of cellular response to TGFbeta stimulus","type":"exact"}],"termid":"GO:1903844"}


id: PBO:0051814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IGF1R antisense imprinted non-protein coding RNA","termid":"PBO:0051814"}


id: GO:0102474
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: eriodictyol dibenzoylmethane tautomer + UDP-alpha-D-glucose = 6C-beta-D-glucosyl-2-hydroxyeriodictyol + UDP + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete eriodictyol dibenzoylmethane tautomer 6C-glucosyltransferase activity (obsolete GO:0102474)","termid":"GO:0102474"}


id: PBO:0043193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoskeleton associated protein 2 like","termid":"PBO:0043193"}


id: FYPO:0004982
data:
  {"alleles_by_uniquename":{"SJAG_02621:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02621","name":"ago1delta","uniquename":"SJAG_02621:allele-1"},"SJAG_03118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03118","name":"leo1delta","uniquename":"SJAG_03118:allele-1"},"SJAG_03689:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03689","name":"dcr1delta","uniquename":"SJAG_03689:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115597,115599],"is_not":false,"summary":null,"term":"FYPO:0004982"}],"single_locus_phenotype":[{"annotations":[115585],"is_not":false,"summary":null,"term":"FYPO:0004982"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which RNAs transcribed from the centromeric region are present at greater levels than normal.","definition_xrefs":["PMID:26369364","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased ncRNA level during vegetative growth","termid":"FYPO:0008146"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02621":null,"SJAG_03118":null,"SJAG_03689":null},"genotype_count":3,"genotypes_by_uniquename":{"ago1delta__leo1delta":{"display_name":"ago1delta leo1delta","display_uniquename":"ago1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},"dcr1delta":{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]},"dcr1delta__leo1delta":{"display_name":"dcr1delta leo1delta","display_uniquename":"dcr1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0006551","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_03118","SJAG_03689","SJAG_02621"],"name":"increased centromeric transcript level","references_by_uniquename":{"PMID:35226668":null},"single_locus_annotated_genes":["SJAG_03689"],"single_locus_genotype_uniquenames":["dcr1delta"],"synonyms":[{"name":"increased accumulation of centromeric transcripts","type":"related"},{"name":"increased accumulation of centromeric transcripts during vegetative growth","type":"related"},{"name":"increased centromere transcript level","type":"exact"},{"name":"increased centromere-derived transcript level","type":"exact"},{"name":"increased centromeric transcript level during mitotic cell cycle","type":"related"},{"name":"increased centromeric transcript level during vegetative growth","type":"exact"},{"name":"increased level of centromeric transcripts","type":"exact"}],"termid":"FYPO:0004982","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000162":null,"FYPO:0004982":null}}


id: PBO:0039775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aquaporin 7B","termid":"PBO:0039775"}


id: GO:0061277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of a mesonephric nephron tubule from unspecified parts. A mesonephric nephron tubule is an epithelial tube that is part of a nephron in the mesonephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesonephric tubule formation","termid":"GO:0072172"},{"relation_name":"part_of","term_name":"mesonephric nephron tubule morphogenesis","termid":"GO:0061240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric nephron tubule formation","termid":"GO:0061277"}


id: PBO:0082584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chromatin-associated protein involved in control of stress response; regulates response to oxidative stress; involved in control of gene repression in subtelomeric chromatin; contains a SET domain; SET4 has a paralog, SET3, that arose from the whole genome duplication","termid":"PBO:0082584"}


id: PBO:0001424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation elongation regulator Gcn1 (predicted)","termid":"PBO:0001424"}


id: FYPO:0005724
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of protein methyltransferase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal protein methyltransferase activity","termid":"FYPO:0005723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000661","FYPO:0000652","FYPO:0000654"],"is_obsolete":false,"name":"increased protein methyltransferase activity","termid":"FYPO:0005724"}


id: PBO:0080667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WAP four-disulfide core domain 12","termid":"PBO:0080667"}


id: PBO:0026681
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_population_growth_on_maltose_carbon_source","termid":"PBO:0026681"}


id: PR:000027591
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A fungal histone H3.2, initiator methionine removed phosphorylated 1 in Schizosaccharomyces pombe. Phosphorylated by Haspin. Example: UniProtKB:P09988-1, 2-136, Thr-4, MOD:00047.","definition_xrefs":["PomBase:MAH","PMID:20929775"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3.2, initiator methionine removed form (Schizosaccharomyces pombe)","termid":"PR:000027580"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hht2/Phos(T3)","pombase_gene_id":"SPBC8D2.04","synonyms":[{"name":"H3-pT3","type":"related"},{"name":"PomBase_original_PRO_term_name: histone H3.2, initiator methionine removed phosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-hht2/InitMet-/Phos:1","type":"exact"},{"name":"hht2/InitMet-/Phos:(T4)","type":"exact"},{"name":"hht2/Phos(T3)","type":"exact"}],"termid":"PR:000027591"}


id: PBO:0113165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Inosine 5'-monophosphate (IMP)-specific 5'-nucleotidase; catalyzes the breakdown of IMP to inosine; responsible for production of nicotinamide riboside and nicotinic acid riboside; tetrameric form negatively regulated by inosine and ATP; expression positively regulated by nicotinic acid and glucose availability; does not show similarity to known 5'-nucleotidases from other organisms","termid":"PBO:0113165"}


id: GO:0036129
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hydrogen peroxide (H2O2) stimulus.","definition_xrefs":["GOC:al"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transcription from RNA polymerase II promoter in response to hydrogen peroxide (obsolete GO:0036129)","termid":"GO:0036129"}


id: GO:0099129
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A rapid, force generating length change of an outer hair cell in response to electrical stimulation. This occurs naturally as during hearing where it serves a source of mechanical amplification.","definition_xrefs":["PMID:12239568","PMID:2187727","PMID:16887876"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin-mediated cell contraction","termid":"GO:0070252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cochlear outer hair cell electromotile response","termid":"GO:0099129"}


id: FYPO:0007623
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mitochondrial respiratory chain complex III assembly is decreased.","definition_xrefs":["PomBase:mah","GO:0034551"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased mitochondrial respiratory chain complex assembly","termid":"FYPO:0007122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased mitochondrial respiratory chain complex III assembly","synonyms":[{"name":"decreased mitochondrial respiratory chain complex III assembly during mitotic cell cycle","type":"related"},{"name":"decreased mitochondrial respiratory chain complex III assembly during vegetative growth","type":"exact"},{"name":"decreased respiratory chain complex III assembly","type":"exact"}],"termid":"FYPO:0007623"}


id: PBO:0080071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 35","termid":"PBO:0080071"}


id: GO:0009104
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipopolysaccharide metabolic process","termid":"GO:0008653"},{"relation_name":"is_a","term_name":"macromolecule catabolic process","termid":"GO:0009057"},{"relation_name":"is_a","term_name":"lipid catabolic process","termid":"GO:0016042"},{"relation_name":"is_a","term_name":"carbohydrate derivative catabolic process","termid":"GO:1901136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"lipopolysaccharide catabolic process","synonyms":[{"name":"LPS catabolic process","type":"exact"},{"name":"lipopolysaccharide breakdown","type":"exact"},{"name":"lipopolysaccharide catabolism","type":"exact"},{"name":"lipopolysaccharide degradation","type":"exact"}],"termid":"GO:0009104"}


id: GO:0010851
data:
  {"annotated_genes":["SJAG_02444"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90280],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010856"}]},"cv_name":"molecular_function","definition":"Binds to and modulates the activity of an enzyme that catalyzes a ring closure reaction.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme regulator activity","termid":"GO:0030234"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02444":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0098772","GO:0030234","GO:0003674"],"is_obsolete":false,"name":"cyclase regulator activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010851","terms_by_termid":{"GO:0010856":null}}


id: PBO:0044756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 39B pseudogene 2","termid":"PBO:0044756"}


id: PBO:0053936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1235","termid":"PBO:0053936"}


id: PBO:0040423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting V0 subunit e1","termid":"PBO:0040423"}


id: GO:0030532
data:
  {"annotated_genes":["SJAG_03070","SJAG_00474","SJAG_03214","SJAG_00414","SJAG_02469","SJAG_01327","SJAG_01308","SJAG_04079","SJAG_00539","SJAG_00577","SJAG_03410","SJAG_00498","SJAG_04497","SJAG_00531","SJAG_04230","SJAG_01452","SJAG_00322","SJAG_00504","SJAG_00147","SJAG_00643","SJAG_05208","SJAG_00313","SJAG_02185","SJAG_02295","SJAG_02279","SJAG_02372","SJAG_04433","SJAG_03469","SJAG_01015","SJAG_02304","SJAG_04318","SJAG_01819","SJAG_05235","SJAG_03954","SJAG_02455","SJAG_04222","SJAG_04405","SJAG_04538","SJAG_03210","SJAG_03995","SJAG_00058","SJAG_01008","SJAG_01870","SJAG_04529","SJAG_00989","SJAG_01654","SJAG_04214","SJAG_01440","SJAG_01301","SJAG_03983","SJAG_01547","SJAG_02681","SJAG_02377","SJAG_01634","SJAG_02843","SJAG_04163","SJAG_03369","SJAG_03547","SJAG_00278","SJAG_05009","SJAG_03245","SJAG_05240","SJAG_04911","SJAG_03460"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[87730,89735,107349],"is_not":false,"summary":null,"term":"GO:0030532"},{"annotations":[87607,93871,90050,111249,90967,102938,98560,106627,91221,106646,98722,106060,106657,91645,101867,109284,108369],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005685"},{"annotations":[111868,98561,89413,91865,98434,99216,91222,101513,102429,103885,108886,91646,108451,89087,104531,106628,105500,102336,90216,102756,98657,101868,106061,112417,91379,97759,108657,92374,90968,110937],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005686"},{"annotations":[106630,90970,98206,91224,98563,101870],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005687"},{"annotations":[98564,110863,94051,108887,111212,106062,107710,110938,96651,106631,91648,91225,101828,101871,110364,102537,104532,111869,85599,90971,94810,91591,107139,112419,98207,89152,88992,89357,102337,91866],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046540"},{"annotations":[91226,110365,108252,93442,106632,98565,112420,102338,106063,96652,98718,90972,108888,111213,94052,91867,102538,110939,111870,91649,113827,104533,101872],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005682"},{"annotations":[102339,108889,91868,104534,110940,111871,101488,112421],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005688"}]},"cv_name":"cellular_component","definition":"A ribonucleoprotein complex that contains at least one RNA of the small nuclear RNA (snRNA) class and as well as its associated proteins. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP, U4/U6 snRNP, or 7SK snRNP. Many, of these complexes become part of the spliceosome involved in splicing of nuclear mRNAs. Others are involved in regulation of transcription elongation or 3'-end processing of replication-dependent histone pre-mRNAs.","definition_xrefs":["GOC:mah","ISBN:0879695897","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Sm-like protein family complex","termid":"GO:0120114"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"is_a","term_name":"ribonucleoprotein complex","termid":"GO:1990904"}],"gene_count":64,"genes_by_uniquename":{"SJAG_00058":null,"SJAG_00147":null,"SJAG_00278":null,"SJAG_00313":null,"SJAG_00322":null,"SJAG_00414":null,"SJAG_00474":null,"SJAG_00498":null,"SJAG_00504":null,"SJAG_00531":null,"SJAG_00539":null,"SJAG_00577":null,"SJAG_00643":null,"SJAG_00989":null,"SJAG_01008":null,"SJAG_01015":null,"SJAG_01301":null,"SJAG_01308":null,"SJAG_01327":null,"SJAG_01440":null,"SJAG_01452":null,"SJAG_01547":null,"SJAG_01634":null,"SJAG_01654":null,"SJAG_01819":null,"SJAG_01870":null,"SJAG_02185":null,"SJAG_02279":null,"SJAG_02295":null,"SJAG_02304":null,"SJAG_02372":null,"SJAG_02377":null,"SJAG_02455":null,"SJAG_02469":null,"SJAG_02681":null,"SJAG_02843":null,"SJAG_03070":null,"SJAG_03210":null,"SJAG_03214":null,"SJAG_03245":null,"SJAG_03369":null,"SJAG_03410":null,"SJAG_03460":null,"SJAG_03469":null,"SJAG_03547":null,"SJAG_03954":null,"SJAG_03983":null,"SJAG_03995":null,"SJAG_04079":null,"SJAG_04163":null,"SJAG_04214":null,"SJAG_04222":null,"SJAG_04230":null,"SJAG_04318":null,"SJAG_04405":null,"SJAG_04433":null,"SJAG_04497":null,"SJAG_04529":null,"SJAG_04538":null,"SJAG_04911":null,"SJAG_05009":null,"SJAG_05208":null,"SJAG_05235":null,"SJAG_05240":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"small nuclear ribonucleoprotein complex","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:SnRNP"],"synonyms":[{"name":"small nuclear ribonucleoprotein","type":"exact"},{"name":"snRNP","type":"exact"}],"termid":"GO:0030532","terms_by_termid":{"GO:0005682":null,"GO:0005685":null,"GO:0005686":null,"GO:0005687":null,"GO:0005688":null,"GO:0030532":null,"GO:0046540":null}}


id: GO:0000268
data:
  {"annotated_genes":["SJAG_00702","SJAG_00326","SJAG_03781"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[107857],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005052"},{"annotations":[86490],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005053"},{"annotations":[86482],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033328"}]},"cv_name":"molecular_function","definition":"Binding to a peroxisomal targeting sequence, a sequence of amino acids within a protein that acts as a signal for the localization of a protein into the peroxisome.","definition_xrefs":["GOC:mah","ISBN:0879693568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal sequence binding","termid":"GO:0005048"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00326":null,"SJAG_00702":null,"SJAG_03781":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005048"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005048","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"peroxisome targeting sequence binding","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0005051"],"synonyms":[{"name":"PTS binding","type":"exact"},{"name":"PTS receptor","type":"narrow"},{"name":"peroxisome targeting signal receptor","type":"narrow"}],"termid":"GO:0000268","terms_by_termid":{"GO:0005052":null,"GO:0005053":null,"GO:0033328":null}}


id: GO:0097540
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Part of the axoneme consisting of the inner two microtubule doublets of the 9+2 axoneme occurring in most motile cilia.","definition_xrefs":["GOC:krc","GOC:cilia","PMID:24283352"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"axonemal central apparatus","termid":"GO:1990716"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"axonemal central pair","synonyms":[{"name":"axonemal microtubule central pair","type":"exact"},{"name":"axoneme central pair","type":"exact"},{"name":"axoneme microtubule central pair","type":"exact"},{"name":"central pair","type":"broad"},{"name":"central-pair microtubules","type":"related"}],"termid":"GO:0097540"}


id: PBO:0081750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 680","termid":"PBO:0081750"}


id: GO:0003403
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of the optic vesicle from the lateral wall of the forebrain. This process begins with the specific processes that contribute to the appearance of the vesicle and ends when the vesicle has evaginated. The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup.","definition_xrefs":["GOC:ascb_2009","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"optic vesicle morphogenesis","termid":"GO:0003404"},{"relation_name":"part_of","term_name":"embryonic camera-type eye formation","termid":"GO:0060900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"optic vesicle formation","termid":"GO:0003403"}


id: GO:0042296
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of ISG15 from one protein to another via the reaction X-ISG15 + Y = Y-ISG15 + X, where both X-ISG15 and Y-ISG15 are covalent linkages.","definition_xrefs":["GOC:mah","PMID:12826404"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like protein transferase activity","termid":"GO:0019787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0019787"}],"interesting_parent_ids":["GO:0140096","GO:0016740","GO:0016746","GO:0019787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"ISG15 transferase activity","secondary_identifiers":["Reactome:R-HSA-5653754"],"synonyms":[{"name":"ISG15 conjugating enzyme activity","type":"narrow"}],"termid":"GO:0042296"}


id: GO:0033531
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving stachyose, the tetrasaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide metabolic process","termid":"GO:0009311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"stachyose metabolic process","synonyms":[{"name":"stachyose metabolism","type":"exact"}],"termid":"GO:0033531"}


id: PBO:0059694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO2 pseudogene 2","termid":"PBO:0059694"}


id: PBO:0010218
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene merge, SPNCRNA.502 was a subsequence of SPNCRNA.1228","termid":"PBO:0010218"}


id: GO:0098638
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Any laminin protein binding that occurs as part of cell-matrix adhesion.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laminin binding","termid":"GO:0043236"},{"relation_name":"is_a","term_name":"cell-matrix adhesion mediator activity","termid":"GO:0098634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098631"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0098631","GO:0005515"],"is_obsolete":false,"name":"laminin binding involved in cell-matrix adhesion","termid":"GO:0098638"}


id: MOD:00926
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Modification from Unimod Non-standard residue. OBSOLETE because not an amino acid modification. From Unimod not an approved entry.","definition_xrefs":["Unimod:493","PubMed:11225353"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00926 Bisphenol A diglycidyl ether derivative (obsolete MOD:00926)","synonyms":[{"name":"BADGE","type":"related"},{"name":"Bisphenol A diglycidyl ether derivative","type":"related"}],"termid":"MOD:00926"}


id: PBO:0063350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pecanex 4","termid":"PBO:0063350"}


id: PBO:0000908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-directed RNA polymerase Rdp1","termid":"PBO:0000908"}


id: FYPO:0001894
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A sporulation phenotype in which asci that contain more or fewer than four spores form following conjugation and subsequent sporulation.","definition_xrefs":["PomBase:mah","PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal sporulation","termid":"FYPO:0000121"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000121"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000121"],"is_obsolete":false,"name":"abnormal sporulation resulting in formation of ascus with more or fewer than four spores","synonyms":[{"name":"abnormal ascospore formation resulting in formation of asci with more or fewer than four spores","type":"exact"},{"name":"abnormal spore number","type":"exact"},{"name":"abnormal sporulation resulting in formation of asci with more or fewer than four spores","type":"exact"}],"termid":"FYPO:0001894"}


id: PBO:0054682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2090","termid":"PBO:0054682"}


id: PR:O14400
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glycerol-3-phosphate dehydrogenase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04848","PANTHER:PTHR11985:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol-3-phosphate dehydrogenase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1223.03c","secondary_identifiers":["UniProtKB:O14400"],"synonyms":[{"name":"GPD-M (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GPDH-M (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-GPD2","type":"exact"}],"termid":"PR:O14400"}


id: PBO:0017585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase-promoting complex, TPR lobe subcomplex subunit Apc8","termid":"PBO:0017585"}


id: PBO:0083792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein of the inner mitochondrial membrane; peripherally localized; component of the TIM22 complex, which is a twin-pore translocase that mediates insertion of numerous multispanning inner membrane proteins","termid":"PBO:0083792"}


id: PBO:0086250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that modulates the efficiency of translation termination; interacts with translation release factors eRF1 (Sup45p) and eRF3 (Sup35p) in vitro, contains a zinc finger domain characteristic of the TRIAD class of proteins","termid":"PBO:0086250"}


id: PBO:0002170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ABC family iron transporter Atm1","termid":"PBO:0002170"}


id: GO:0099639
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of neurotransmitter receptor from the endosome to the plasma membrane in transport vesicles.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurotransmitter receptor transport to plasma membrane","termid":"GO:0098877"},{"relation_name":"is_a","term_name":"endosome to plasma membrane protein transport","termid":"GO:0099638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0051179","GO:0016192","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"neurotransmitter receptor transport, endosome to plasma membrane","termid":"GO:0099639"}


id: PBO:0085898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; localizes to the nucleus; required for asymmetric localization of Kar9p during mitosis","termid":"PBO:0085898"}


id: PBO:0046674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESX homeobox 1","termid":"PBO:0046674"}


id: PBO:0048809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit beta 3","termid":"PBO:0048809"}


id: PBO:0051142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-20","termid":"PBO:0051142"}


id: PBO:0079500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin like 4A","termid":"PBO:0079500"}


id: PBO:0043730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6C pseudogene 9","termid":"PBO:0043730"}


id: PBO:0042553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 16","termid":"PBO:0042553"}


id: FYPO:0001748
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of nickel ions into a cell occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nickel import","termid":"FYPO:0001747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"decreased nickel import","synonyms":[{"name":"decreased cellular nickel import","type":"exact"},{"name":"decreased nickel cation import","type":"exact"},{"name":"decreased nickel import across plasma membrane","type":"exact"},{"name":"decreased nickel import during mitotic cell cycle","type":"related"},{"name":"decreased nickel import during vegetative growth","type":"exact"},{"name":"decreased nickel import into cell","type":"exact"},{"name":"decreased nickel ion import","type":"exact"},{"name":"reduced nickel import","type":"exact"}],"termid":"FYPO:0001748"}


id: PBO:0060647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor coactivator 5 like, pseudogene","termid":"PBO:0060647"}


id: GO:1903684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of border follicle cell migration.","definition_xrefs":["GOC:TermGenie","GOC:als","PMID:18394891","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epithelial cell migration","termid":"GO:0010632"},{"relation_name":"regulates","term_name":"border follicle cell migration","termid":"GO:0007298"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of border follicle cell migration","synonyms":[{"name":"regulation of border cell migration","type":"broad"}],"termid":"GO:1903684"}


id: GO:0047811
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-alanine + L-glutamine = gamma-L-glutamyl-D-alanine + NH4.","definition_xrefs":["RHEA:23556"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyltransferase activity","termid":"GO:0016755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"D-alanine gamma-glutamyltransferase activity","secondary_identifiers":["KEGG_REACTION:R01149","MetaCyc:D-ALANINE-GAMMA-GLUTAMYLTRANSFERASE-RXN","EC:2.3.2.14"],"synonyms":[{"name":"D-alanine g-glutamyltransferase activity","type":"exact"}],"termid":"GO:0047811"}


id: GO:0043955
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-hydroxypropionate + ATP + CoA = 3-hydroxypropionyl-CoA + AMP + diphosphate.","definition_xrefs":["PMID:11821399","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"},{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016874","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"3-hydroxypropionyl-CoA synthetase activity","secondary_identifiers":["RHEA:26534","EC:6.2.1.36"],"synonyms":[{"name":"3-hydroxy propionyl-CoA synthetase activity","type":"exact"},{"name":"AMP-dependent synthetase and ligase","type":"broad"},{"name":"AMP-dependent synthetase and ligase:Enoyl-CoA hydratase/isomerase","type":"broad"},{"name":"acetyl-coenzyme A synthetase","type":"broad"},{"name":"acetyl-coenzyme A synthetase/GroES-like domain","type":"narrow"},{"name":"enoyl-CoA hydratase/isomerase","type":"broad"}],"termid":"GO:0043955"}


id: GO:0003750
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:krc"],"gene_count":0,"genotype_count":0,"name":"obsolete cell cycle regulator (obsolete GO:0003750)","synonyms":[{"name":"cell cycle regulator","type":"exact"}],"termid":"GO:0003750"}


id: PBO:0085989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; required for proliferation or remodeling of the ER that is caused by overexpression of Hmg2p; may interact with ribosomes, based on co-purification experiments; HER1 has a paralog, GIP3, that arose from the whole genome duplication","termid":"PBO:0085989"}


id: PBO:0000055
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"no apparent S. cerevisiae ortholog","termid":"PBO:0000055"}


id: PBO:0053785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1036","termid":"PBO:0053785"}


id: GO:1902643
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process.","definition_xrefs":["GOC:di","GO_REF:0000058","GOC:TermGenie","PMID:22562153"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of phospholipid catabolic process","termid":"GO:0060697"},{"relation_name":"is_a","term_name":"regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","termid":"GO:1902641"},{"relation_name":"positively_regulates","term_name":"1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","termid":"GO:1902634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","synonyms":[{"name":"activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown","type":"narrow"},{"name":"activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","type":"narrow"},{"name":"activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism","type":"narrow"},{"name":"activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation","type":"narrow"},{"name":"positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown","type":"exact"},{"name":"positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism","type":"exact"},{"name":"positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation","type":"exact"},{"name":"up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown","type":"exact"},{"name":"up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","type":"exact"},{"name":"up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism","type":"exact"},{"name":"up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation","type":"exact"},{"name":"up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown","type":"exact"},{"name":"up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","type":"exact"},{"name":"up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism","type":"exact"},{"name":"up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation","type":"exact"},{"name":"upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown","type":"exact"},{"name":"upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","type":"exact"},{"name":"upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism","type":"exact"},{"name":"upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation","type":"exact"}],"termid":"GO:1902643"}


id: PBO:0052775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 67","termid":"PBO:0052775"}


id: PBO:0083164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps the verified ORF RPL36B/YPL249C-A; identified by fungal homology and RT-PCR","termid":"PBO:0083164"}


id: GO:1902650
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of histone H2A-H2B dimer displacement.","definition_xrefs":["GOC:TermGenie","PMID:22199252","GO_REF:0000058","GOC:di"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone H2A-H2B dimer displacement (obsolete GO:1902650)","synonyms":[{"name":"down regulation of histone H2A-H2B dimer displacement","type":"exact"},{"name":"down-regulation of histone H2A-H2B dimer displacement","type":"exact"},{"name":"downregulation of histone H2A-H2B dimer displacement","type":"exact"},{"name":"inhibition of histone H2A-H2B dimer displacement","type":"narrow"}],"termid":"GO:1902650"}


id: GO:0016701
data:
  {"annotated_genes":["SJAG_00519","SJAG_03225","SJAG_00309"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100743],"is_not":false,"summary":null,"term":"GO:0016701"},{"annotations":[108434],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010308"},{"annotations":[108435],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010309"},{"annotations":[85899],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0102672"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and molecular oxygen is incorporated into a donor.","definition_xrefs":["EC:1.13.-.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00309":null,"SJAG_00519":null,"SJAG_03225":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, miscellaneous","type":"narrow"},{"name":"oxygenase","type":"broad"}],"termid":"GO:0016701","terms_by_termid":{"GO:0010308":null,"GO:0010309":null,"GO:0016701":null,"GO:0102672":null}}


id: PBO:0003955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetolactate synthase regulatory unit (predicted)","termid":"PBO:0003955"}


id: PBO:0077483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM202 antisense RNA 1","termid":"PBO:0077483"}


id: PBO:0044919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DiGeorge syndrome critical region gene 5","termid":"PBO:0044919"}


id: GO:0051894
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of focal adhesion assembly, the establishment and maturation of focal adhesions.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell-matrix adhesion","termid":"GO:0001954"},{"relation_name":"is_a","term_name":"regulation of focal adhesion assembly","termid":"GO:0051893"},{"relation_name":"is_a","term_name":"positive regulation of cell-substrate junction organization","termid":"GO:0150117"},{"relation_name":"is_a","term_name":"positive regulation of cell junction assembly","termid":"GO:1901890"},{"relation_name":"positively_regulates","term_name":"focal adhesion assembly","termid":"GO:0048041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0007155"],"is_obsolete":false,"name":"positive regulation of focal adhesion assembly","synonyms":[{"name":"activation of focal adhesion formation","type":"narrow"},{"name":"stimulation of focal adhesion formation","type":"narrow"},{"name":"up regulation of focal adhesion formation","type":"exact"},{"name":"up-regulation of focal adhesion formation","type":"exact"},{"name":"upregulation of focal adhesion formation","type":"exact"}],"termid":"GO:0051894"}


id: GO:0007378
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of the amnioserosa, an epithelium that occupies a hole in the embryonic dorsal epidermis. This occurs by the transformation of a narrow strip of cells at the dorsal midline of the blastoderm from columnar to squamous cells, accompanied by a lateral shift.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"gastrulation involving germ band extension","termid":"GO:0010004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amnioserosa formation","termid":"GO:0007378"}


id: PBO:0017695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial translation release factor","termid":"PBO:0017695"}


id: GO:0075328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly of an arbuscule, a fine, tree-like hyphal symbiont structure projected into the host cell for the purpose of obtaining nutrients. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formation of specialized structure for nutrient acquisition","termid":"GO:0052093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"formation of arbuscule for nutrient acquisition","synonyms":[{"name":"formation by symbiont of arbuscule for nutrient acquisition from host","type":"related"}],"termid":"GO:0075328"}


id: SO:0000638
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Part of an rRNA transcription unit that is transcribed but discarded during maturation, not giving rise to any part of rRNA.","direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA_primary_transcript_region","termid":"SO:0000838"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcribed_spacer_region","synonyms":[{"name":"transcribed spacer region","type":"exact"}],"termid":"SO:0000638"}


id: PBO:0056662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MED28 divergent transcript","termid":"PBO:0056662"}


id: PBO:0091767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mating type M-specific HMG-box DNA-binding transcription factor Mc at silenced MAT3 locus","termid":"PBO:0091767"}


id: PBO:0001740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"importin family nuclear export receptor Crm1","termid":"PBO:0001740"}


id: GO:1990577
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of a methyl group from the C-terminal amino acid of a protein.","definition_xrefs":["PMID:11060018"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein demethylation","termid":"GO:0006482"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"C-terminal protein demethylation","termid":"GO:1990577"}


id: PATO:0001301
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An optical quality that is the mixture, purity or pattern of wavelengths of light perceived by the observer.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"optical quality","termid":"PATO:0001300"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromatic property","termid":"PATO:0001301"}


id: GO:0015776
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of capsular polysaccharides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Capsular polysaccharides make up the capsule, a protective structure surrounding some species of bacteria and fungi.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide transport","termid":"GO:0015774"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"capsular polysaccharide transport","synonyms":[{"name":"capsular-polysaccharide transport","type":"exact"},{"name":"capsule polysaccharide transport","type":"exact"}],"termid":"GO:0015776"}


id: SO:0002158
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene cassette array containing H- mating type specific information.","definition_xrefs":["PMID:18354497"],"direct_ancestors":[{"relation_name":"is_a","term_name":"silent_mating_type_cassette_array","termid":"SO:0001984"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mat3M","termid":"SO:0002158"}


id: GO:1905723
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of trypanothione biosynthetic process.","definition_xrefs":["GO_REF:0000058","PMID:18949025","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular biosynthetic process","termid":"GO:0031327"},{"relation_name":"is_a","term_name":"negative regulation of sulfur metabolic process","termid":"GO:0051175"},{"relation_name":"is_a","term_name":"regulation of trypanothione biosynthetic process","termid":"GO:1905722"},{"relation_name":"negatively_regulates","term_name":"trypanothione biosynthetic process","termid":"GO:0019342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"negative regulation of trypanothione biosynthetic process","synonyms":[{"name":"down regulation of trypanothione anabolism","type":"exact"},{"name":"down regulation of trypanothione biosynthesis","type":"exact"},{"name":"down regulation of trypanothione biosynthetic process","type":"exact"},{"name":"down regulation of trypanothione formation","type":"exact"},{"name":"down regulation of trypanothione synthesis","type":"exact"},{"name":"down-regulation of trypanothione anabolism","type":"exact"},{"name":"down-regulation of trypanothione biosynthesis","type":"exact"},{"name":"down-regulation of trypanothione biosynthetic process","type":"exact"},{"name":"down-regulation of trypanothione formation","type":"exact"},{"name":"down-regulation of trypanothione synthesis","type":"exact"},{"name":"downregulation of trypanothione anabolism","type":"exact"},{"name":"downregulation of trypanothione biosynthesis","type":"exact"},{"name":"downregulation of trypanothione biosynthetic process","type":"exact"},{"name":"downregulation of trypanothione formation","type":"exact"},{"name":"downregulation of trypanothione synthesis","type":"exact"},{"name":"inhibition of trypanothione anabolism","type":"narrow"},{"name":"inhibition of trypanothione biosynthesis","type":"narrow"},{"name":"inhibition of trypanothione biosynthetic process","type":"narrow"},{"name":"inhibition of trypanothione formation","type":"narrow"},{"name":"inhibition of trypanothione synthesis","type":"narrow"},{"name":"negative regulation of trypanothione anabolism","type":"exact"},{"name":"negative regulation of trypanothione biosynthesis","type":"exact"},{"name":"negative regulation of trypanothione formation","type":"exact"},{"name":"negative regulation of trypanothione synthesis","type":"exact"}],"termid":"GO:1905723"}


id: PBO:0070255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 200 pseudogene","termid":"PBO:0070255"}


id: _global:inheres_in_part_of
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inheres_in_part_of","secondary_identifiers":["RO:0002314"],"termid":"_global:inheres_in_part_of"}


id: PBO:0003255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogene wtf element Wtf2","termid":"PBO:0003255"}


id: PBO:0040823
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bridging integrator 2 pseudogene 1","termid":"PBO:0040823"}


id: GO:0033058
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Self-propelled movement of a cell or organism from one location to another along an axis.","definition_xrefs":["GOC:mtg_MIT_16mar07"],"direct_ancestors":[{"relation_name":"is_a","term_name":"locomotion","termid":"GO:0040011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"directional locomotion","termid":"GO:0033058"}


id: PBO:0084313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Isopropylmalate isomerase; catalyzes the second step in the leucine biosynthesis pathway","termid":"PBO:0084313"}


id: GO:0097113
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The glutamate receptor clustering process in which alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate (AMPA) receptors are localized to distinct domains in the cell membrane.","definition_xrefs":["GOC:BHF","GOC:pr","GOC:sjp","PMID:12796785"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate receptor clustering","termid":"GO:0097688"},{"relation_name":"part_of","term_name":"postsynaptic membrane organization","termid":"GO:0001941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0061024","GO:0008150"],"is_obsolete":false,"name":"AMPA glutamate receptor clustering","synonyms":[{"name":"AMPA receptor clustering","type":"exact"},{"name":"alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor clustering","type":"exact"}],"termid":"GO:0097113"}


id: PBO:0056049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lung adenocarcinoma associated transcript 1","termid":"PBO:0056049"}


id: FYPO:0002633
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of dTTP measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular dTTP level","synonyms":[{"name":"increased cellular dTTP level during mitotic cell cycle","type":"related"},{"name":"increased cellular dTTP level during vegetative growth","type":"exact"},{"name":"increased dTTP accumulation","type":"related"}],"termid":"FYPO:0002633"}


id: MOD:01092
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mesitylene-2-sulfonyl","synonyms":[{"name":"Mts","type":"exact"}],"termid":"MOD:01092"}


id: GO:0030021
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A constituent of the extracellular matrix that enables the matrix to resist compressive forces; often a proteoglycan.","definition_xrefs":["GOC:mah","ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix structural constituent","termid":"GO:0005201"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005198"}],"interesting_parent_ids":["GO:0005198","GO:0003674"],"is_obsolete":false,"name":"extracellular matrix structural constituent conferring compression resistance","synonyms":[{"name":"core extracellular matrix","type":"broad"},{"name":"core matrisome","type":"broad"}],"termid":"GO:0030021"}


id: GO:0072161
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the mesenchymal cells of the kidney as it progresses from its formation to the mature state.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation involved in kidney development","termid":"GO:0061005"},{"relation_name":"is_a","term_name":"mesenchymal cell differentiation involved in renal system development","termid":"GO:2001012"},{"relation_name":"part_of","term_name":"kidney mesenchyme development","termid":"GO:0072074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal cell differentiation involved in kidney development","termid":"GO:0072161"}


id: PBO:0045428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dermatopontin","termid":"PBO:0045428"}


id: MOD:01888
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively removes two neutral hydrogen atoms (proton and electron) from a residue.","definition_xrefs":["Unimod:401"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dehydrogenated residue","termid":"MOD:00683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"didehydrogenated residue","synonyms":[{"name":"2dHRes","type":"exact"}],"termid":"MOD:01888"}


id: GO:1905403
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of activated CD8-positive, alpha-beta T cell apoptotic process.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:24187568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of T cell apoptotic process","termid":"GO:0070233"},{"relation_name":"is_a","term_name":"regulation of activated CD8-positive, alpha-beta T cell apoptotic process","termid":"GO:1905402"},{"relation_name":"negatively_regulates","term_name":"activated CD8-positive, alpha-beta T cell apoptotic process","termid":"GO:1905397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of activated CD8-positive, alpha-beta T cell apoptotic process","synonyms":[{"name":"down regulation of activated CD8-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"down regulation of activated CD8-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"down regulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"down regulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"down regulation of activated CD8-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"down regulation of activated CD8-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"down regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"down regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"down-regulation of activated CD8-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"down-regulation of activated CD8-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"down-regulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"down-regulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"down-regulation of activated CD8-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"down-regulation of activated CD8-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"down-regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"down-regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"downregulation of activated CD8-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"downregulation of activated CD8-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"downregulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"downregulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"downregulation of activated CD8-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"downregulation of activated CD8-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"downregulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"downregulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"inhibition of activated CD8-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"inhibition of activated CD8-positive, alpha-beta T cell apoptotic process","type":"narrow"},{"name":"inhibition of activated CD8-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"inhibition of activated CD8-positive, alpha-beta T lymphocyte apoptotic process","type":"narrow"},{"name":"inhibition of activated CD8-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"inhibition of activated CD8-positive, alpha-beta T-cell apoptotic process","type":"narrow"},{"name":"inhibition of activated CD8-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"inhibition of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process","type":"narrow"},{"name":"negative regulation of activated CD8-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"negative regulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"negative regulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"negative regulation of activated CD8-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"negative regulation of activated CD8-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"negative regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"negative regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"}],"termid":"GO:1905403"}


id: PBO:0046413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epithelial mitogen","termid":"PBO:0046413"}


id: PBO:0005451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoribosylaminoimidazole carboxylase Ade6","termid":"PBO:0005451"}


id: GO:0030146
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of renal water excretion.","definition_xrefs":["GOC:mtg_cardio","GOC:mah","ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete diuresis (obsolete GO:0030146)","secondary_identifiers":["Wikipedia:Diuresis"],"synonyms":[{"name":"diuresis","type":"exact"},{"name":"positive regulation of renal water excretion","type":"exact"},{"name":"renal water excretion","type":"broad"}],"termid":"GO:0030146"}


id: PBO:0069753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1036, pseudogene","termid":"PBO:0069753"}


id: PBO:0085062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-essential small GTPase of the Rho/Rac family of Ras-like proteins; regulated by phosphorylation and ubiquitination; likely involved in protein kinase C (Pkc1p)-dependent signal transduction pathway that controls cell integrity; necessary for oxidant and ramped heat stress-induced cell death; ortholog of mammalian RAC1","termid":"PBO:0085062"}


id: GO:0075253
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of uredospore formation, a process in which an asexual, dikaryotic, often rusty-colored spore, is formed in a structure called a uredinium.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of asexual sporulation resulting in formation of a cellular spore","termid":"GO:0043945"},{"relation_name":"is_a","term_name":"regulation of uredospore formation","termid":"GO:0075252"},{"relation_name":"positively_regulates","term_name":"uredospore formation","termid":"GO:0075251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of uredospore formation","synonyms":[{"name":"positive regulation of ureidospore formation","type":"exact"}],"termid":"GO:0075253"}


id: GO:0031297
data:
  {"annotated_genes":["SJAG_05180","SJAG_03843","SJAG_01374","SJAG_02198","SJAG_04272","SJAG_01410","SJAG_02214","SJAG_03728","SJAG_01572","SJAG_01185","SJAG_02299","SJAG_00935","SJAG_01076","SJAG_03898","SJAG_04971","SJAG_04183","SJAG_03097","SJAG_01832","SJAG_02079","SJAG_02724","SJAG_01044","SJAG_02698","SJAG_00727","SJAG_05372","SJAG_00623","SJAG_03780","SJAG_05012","SJAG_02294","SJAG_00177","SJAG_03300","SJAG_02822","SJAG_02465","SJAG_01584","SJAG_05237","SJAG_01677","SJAG_02992","SJAG_02439","SJAG_01221"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85237,85663,87005,90657,92060,92221,93532,95089,95307,95398,96670,97193,97544,100167,101733,102627,103758,104150,104515,105083,108523,108524,110289,112822,113115,113449],"is_not":false,"summary":null,"term":"GO:0031297"},{"annotations":[87002,85235,94970,91117,103757,105551,105081,90871,108521,94282,103733,112821,92057,95087,92220],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990426"},{"annotations":[112435,85069,102124],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0120292"},{"annotations":[100168,108525],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071932"},{"annotations":[87581,85664,85238,92729,110290,111514,112823,105963,95090,105553,94972,92222],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0120290"}]},"cv_name":"biological_process","definition":"The process in which a DNA replication fork that has stalled is restored to a functional state and replication is restarted. The stalling may be due to DNA damage, DNA secondary structure, bound proteins, dNTP shortage, or other causes.","definition_xrefs":["GOC:vw","PMID:11459955","PMID:15367656","PMID:17660542"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated DNA replication maintenance of fidelity","termid":"GO:0045005"}],"gene_count":38,"genes_by_uniquename":{"SJAG_00177":null,"SJAG_00623":null,"SJAG_00727":null,"SJAG_00935":null,"SJAG_01044":null,"SJAG_01076":null,"SJAG_01185":null,"SJAG_01221":null,"SJAG_01374":null,"SJAG_01410":null,"SJAG_01572":null,"SJAG_01584":null,"SJAG_01677":null,"SJAG_01832":null,"SJAG_02079":null,"SJAG_02198":null,"SJAG_02214":null,"SJAG_02294":null,"SJAG_02299":null,"SJAG_02439":null,"SJAG_02465":null,"SJAG_02698":null,"SJAG_02724":null,"SJAG_02822":null,"SJAG_02992":null,"SJAG_03097":null,"SJAG_03300":null,"SJAG_03728":null,"SJAG_03780":null,"SJAG_03843":null,"SJAG_03898":null,"SJAG_04183":null,"SJAG_04272":null,"SJAG_04971":null,"SJAG_05012":null,"SJAG_05180":null,"SJAG_05237":null,"SJAG_05372":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006260","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"replication fork processing","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0034065"],"synonyms":[{"name":"collapsed replication fork processing","type":"exact"},{"name":"recovery from replication fork arrest","type":"exact"},{"name":"recovery from replication fork arrest at rDNA locus","type":"narrow"},{"name":"recovery from replication fork stalling","type":"exact"},{"name":"recovery from replication fork stalling at rDNA locus","type":"narrow"},{"name":"replication fork processing at rDNA locus","type":"narrow"},{"name":"replication fork processing at ribosomal DNA locus","type":"narrow"},{"name":"replication fork restart","type":"related"},{"name":"replication restart","type":"related"}],"termid":"GO:0031297","terms_by_termid":{"GO:0031297":null,"GO:0071932":null,"GO:0120290":null,"GO:0120292":null,"GO:1990426":null}}


