# alleles

id: SJAG_00028:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rga6","product":"RhoGAP for Cdc42, Rga6","uniquename":"SJAG_00028"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rga4delta rga6delta","display_uniquename":"rga4delta__rga6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]}]},{"display_name":"rga6delta","display_uniquename":"rga6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]}]},{"display_name":"rga6delta wee1-as8(T582G aa)","display_uniquename":"rga6delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"rga6delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished geometry scaling","termid":"FYPO:0007783"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abolished polar cell growth","termid":"FYPO:0004105"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000004","FYPO:0000005"],"is_obsolete":false,"name":"viable vegetative cell with increased cell diameter","termid":"FYPO:0006616"}],"references_by_uniquename":{},"uniquename":"SJAG_00028:allele-1"}


id: SJAG_00118:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mid2","product":"medial ring protein, anillin Mid2","uniquename":"SJAG_00118"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mid1delta mid2delta","display_uniquename":"mid1delta__mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]},{"display_name":"mid2delta","display_uniquename":"mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]}],"name":"mid2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":3,"interesting_parent_ids":["FYPO:0000032","FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"multiseptate vegetative cell","termid":"FYPO:0000118"}],"references_by_uniquename":{},"uniquename":"SJAG_00118:allele-1"}


id: SJAG_00124:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"product":"NRG1-like transcriptional repressor, zinc finger C2H2-type","uniquename":"SJAG_00124"},"genes_by_uniquename":{},"genotypes":[{"display_name":"SJAG_00124delta","display_uniquename":"SJAG_00124delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00124:allele-1","expression":"Null"}]}]},{"display_name":"SJAG_00124delta sty1delta","display_uniquename":"SJAG_00124delta__sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00124:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}],"name":"SJAG_00124delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased mycelial expansion","termid":"FYPO:0007779"}],"references_by_uniquename":{},"uniquename":"SJAG_00124:allele-1"}


id: SJAG_00266:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"atf1","product":"DNA-binding transcription factor, Atf-CREB family Atf1","uniquename":"SJAG_00266"},"genes_by_uniquename":{},"genotypes":[{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]}],"name":"atf1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002057","FYPO:0000139","FYPO:0001985","FYPO:0000003","FYPO:0005447","FYPO:0002060","FYPO:0002058"],"is_obsolete":false,"name":"abolished cell population growth at high temperature","termid":"FYPO:0004481"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"decreased mating efficiency","termid":"FYPO:0000708"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased quorum sensing response","termid":"FYPO:0007824"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"elongated vegetative cell","termid":"FYPO:0001122"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased hyphal branching","termid":"FYPO:0007777"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased hyphal length","termid":"FYPO:0007775"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased invasive hyphal growth","termid":"FYPO:0007774"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0002683","FYPO:0005447","FYPO:0001985","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to caffeine during vegetative growth","termid":"FYPO:0000097"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003","FYPO:0002683","FYPO:0001985","FYPO:0000139","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to latrunculin A","termid":"FYPO:0000107"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000003","FYPO:0005447","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to oxidative stress","termid":"FYPO:0000726"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to salt stress","termid":"FYPO:0000271"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0005447","FYPO:0002683","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to sodium dodecyl sulfate","termid":"FYPO:0000841"}],"references_by_uniquename":{},"uniquename":"SJAG_00266:allele-1"}


id: SJAG_00364:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad3","product":"ATR checkpoint kinase Rad3","uniquename":"SJAG_00364"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad3delta","display_uniquename":"rad3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00364:allele-1","expression":"Null"}]}]}],"name":"rad3delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0001985","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002060","FYPO:0002058","FYPO:0000139","FYPO:0002057","FYPO:0005447","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_00364:allele-1"}


id: SJAG_00409:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"gpd1","product":"glycerol-3-phosphate dehydrogenase Gpd1","uniquename":"SJAG_00409"},"genes_by_uniquename":{},"genotypes":[{"display_name":"gpd1delta","display_uniquename":"gpd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00409:allele-1","expression":"Null"}]}]}],"name":"gpd1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0005568","FYPO:0001985"],"is_obsolete":false,"name":"abnormal vegetative cell polarity","termid":"FYPO:0000026"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0002058","FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002057","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"inviable vegetative cell","termid":"FYPO:0001489"}],"references_by_uniquename":{},"uniquename":"SJAG_00409:allele-1"}


id: SJAG_00426:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"P363S","gene":{"name":"bbl1","product":"ER phosphatidate cytidylyltransferase Bbl1","uniquename":"SJAG_00426"},"genes_by_uniquename":{},"genotypes":[{"display_name":"bbl1-P363S(aa)","display_uniquename":"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00426:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"bbl1-P363S","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal lipid droplet morphology","termid":"FYPO:0000356"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abnormal tubular endoplasmic reticulum morphology","termid":"FYPO:0006433"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular diglyceride level","termid":"FYPO:0004695"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular triglyceride level during vegetative growth","termid":"FYPO:0002227"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0000257","FYPO:0000139","FYPO:0002058","FYPO:0002057","FYPO:0000003","FYPO:0002060"],"is_obsolete":false,"name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"references_by_uniquename":{},"uniquename":"SJAG_00426:allele-1"}


id: SJAG_00429:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad26","product":"ATRIP, ATR checkpoint kinase regulatory subunit Rad26","uniquename":"SJAG_00429"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad26delta","display_uniquename":"rad26delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00429:allele-1","expression":"Null"}]}]}],"name":"rad26delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0001985","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002060","FYPO:0002058","FYPO:0000139","FYPO:0002057","FYPO:0005447","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_00429:allele-1"}


id: SJAG_00514:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"scd1","product":"RhoGEF Scd1","uniquename":"SJAG_00514"},"genes_by_uniquename":{},"genotypes":[{"display_name":"scd1delta","display_uniquename":"scd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00514:allele-1","expression":"Null"}]}]}],"name":"scd1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abolished polar cell growth","termid":"FYPO:0004105"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0002058","FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002057","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002060","FYPO:0002058","FYPO:0000139","FYPO:0002057","FYPO:0005447","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000004","FYPO:0000005","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"references_by_uniquename":{},"uniquename":"SJAG_00514:allele-1"}


id: SJAG_00601:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rip1","product":"Rieske iron-sulfur protein, ubiquinol-cytochrome-c reductase complex subunit 5, Rip1","uniquename":"SJAG_00601"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rip1delta","display_uniquename":"rip1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00601:allele-1","expression":"Null"}]}]}],"name":"rip1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000257","FYPO:0000301"],"is_obsolete":false,"name":"normal mating","termid":"FYPO:0000760"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal spore germination","termid":"FYPO:0000579"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal sporulation","termid":"FYPO:0000590"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0000257","FYPO:0000139","FYPO:0002058","FYPO:0002057","FYPO:0000003","FYPO:0002060"],"is_obsolete":false,"name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"references_by_uniquename":{},"uniquename":"SJAG_00601:allele-1"}


id: SJAG_00610:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pck2","product":"protein kinase C (PKC)-like Pck2","uniquename":"SJAG_00610"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pck2delta","display_uniquename":"pck2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00610:allele-1","expression":"Null"}]}]}],"name":"pck2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002274","FYPO:0002494","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein phosphorylation","termid":"FYPO:0002678"},{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0002494","FYPO:0002274","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein phosphorylation during vegetative growth","termid":"FYPO:0001838"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0000003","FYPO:0002682","FYPO:0001985","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002683","FYPO:0001985","FYPO:0005447","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to caspofungin","termid":"FYPO:0000079"}],"references_by_uniquename":{},"uniquename":"SJAG_00610:allele-1"}


id: SJAG_00871:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"cut3-T19E","gene":{"name":"cut3","product":"condensin complex SMC subunit Smc4","uniquename":"SJAG_00871"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"cut3-T19E","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"abnormal cell cycle arrest in mitotic anaphase","termid":"FYPO:0000619"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"inviable vegetative cell","termid":"FYPO:0001489"}],"references_by_uniquename":{},"uniquename":"SJAG_00871:allele-1"}


id: SJAG_00993:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"byr1","product":"MAP kinase kinase Byr1","uniquename":"SJAG_00993"},"genes_by_uniquename":{},"genotypes":[{"display_name":"byr1delta","display_uniquename":"byr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00993:allele-1","expression":"Null"}]}]}],"name":"byr1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_00993:allele-1"}


id: SJAG_01050:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nur1","product":"Lem2-Nur1 complex subunit Nur1","uniquename":"SJAG_01050"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nur1delta","display_uniquename":"nur1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]}]},{"display_name":"nur1delta vps4delta","display_uniquename":"nur1delta__vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}],"name":"nur1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to heterochromatin during vegetative growth","termid":"FYPO:0001132"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000138","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to nuclear envelope during vegetative growth","termid":"FYPO:0007073"}],"references_by_uniquename":{},"uniquename":"SJAG_01050:allele-1"}


id: SJAG_01081:allele-1
data:
  {"allele_type":"nonsense_mutation","alleles_by_uniquename":{},"description":"S427>stop","gene":{"name":"ade6","product":"phosphoribosylaminoimidazole carboxylase Ade6","uniquename":"SJAG_01081"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ade6-domE(S427>stop)","display_uniquename":"ade6-domE-S427>stop-nonsense_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01081:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"ade6-domE","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"growth auxotrophic for adenine","termid":"FYPO:0000747"}],"references_by_uniquename":{},"uniquename":"SJAG_01081:allele-1"}


id: SJAG_01081:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"Q262A","gene":{"name":"ade6","product":"phosphoribosylaminoimidazole carboxylase Ade6","uniquename":"SJAG_01081"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ade6-domK(Q262A aa)","display_uniquename":"ade6-domK-Q262A-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01081:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"ade6-domK","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"growth auxotrophic for adenine","termid":"FYPO:0000747"}],"references_by_uniquename":{},"uniquename":"SJAG_01081:allele-2"}


id: SJAG_01081:allele-3
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ade6","product":"phosphoribosylaminoimidazole carboxylase Ade6","uniquename":"SJAG_01081"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ade6delta","display_uniquename":"ade6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01081:allele-3","expression":"Null"}]}]}],"name":"ade6delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"growth auxotrophic for adenine","termid":"FYPO:0000747"}],"references_by_uniquename":{},"uniquename":"SJAG_01081:allele-3"}


id: SJAG_01113:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"R47K","gene":{"product":"mating-type transcription factor (Pc-like)","uniquename":"SJAG_01113"},"genes_by_uniquename":{},"genotypes":[],"name":"mat-Pc-R47K","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_01113:allele-1"}


id: SJAG_01143:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mid1","product":"anillin-related medial ring protein Mid1","uniquename":"SJAG_01143"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cdc15-A(L264P,P442T aa) mid1delta","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type__mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},{"display_name":"mid1delta","display_uniquename":"mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},{"display_name":"mid1delta mid2delta","display_uniquename":"mid1delta__mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]},{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}],"name":"mid1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000032","FYPO:0001320","FYPO:0004803","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"abnormal actomyosin contractile ring myosin filament organization","termid":"FYPO:0000231"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abnormally monopolar protein localization to cell tip","termid":"FYPO:0005503"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to medial cortex during mitotic interphase","termid":"FYPO:0007177"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0004803","FYPO:0005447","FYPO:0000002","FYPO:0000032","FYPO:0001985","FYPO:0000631","FYPO:0001320"],"is_obsolete":false,"name":"delayed onset of actomyosin contractile ring assembly","termid":"FYPO:0000729"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"delayed onset of protein localization to cell division site","termid":"FYPO:0003946"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":3,"interesting_parent_ids":["FYPO:0000032","FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"multiseptate vegetative cell","termid":"FYPO:0000118"}],"references_by_uniquename":{},"uniquename":"SJAG_01143:allele-1"}


id: SJAG_01143:allele-2
data:
  {"allele_type":"partial_amino_acid_deletion","alleles_by_uniquename":{},"description":"711-723","gene":{"name":"mid1","product":"anillin-related medial ring protein Mid1","uniquename":"SJAG_01143"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mid1-delta(711-723 a.a.)(aa)","display_uniquename":"mid1-delta(711-723_a.a.)-711-723-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"mid1-delta(711-723 a.a.)","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"}],"references_by_uniquename":{},"uniquename":"SJAG_01143:allele-2"}


id: SJAG_01181:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pek1","product":"MAP kinase kinase Pek1","uniquename":"SJAG_01181"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pek1delta","display_uniquename":"pek1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01181:allele-1","expression":"Null"}]}]}],"name":"pek1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_01181:allele-1"}


id: SJAG_01205:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"crb2","product":"BRCT and tudor domain DNA checkpoint protein Crb2","uniquename":"SJAG_01205"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chk1delta crb2delta","display_uniquename":"chk1delta__crb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01205:allele-1","expression":"Null"}]}]},{"display_name":"crb2delta","display_uniquename":"crb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01205:allele-1","expression":"Null"}]}]}],"name":"crb2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0001985","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"}],"references_by_uniquename":{},"uniquename":"SJAG_01205:allele-1"}


id: SJAG_01242:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps32","product":"ESCRT III complex subunit Vps32","uniquename":"SJAG_01242"},"genes_by_uniquename":{},"genotypes":[{"display_name":"vps32delta","display_uniquename":"vps32delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01242:allele-1","expression":"Null"}]}]}],"name":"vps32delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002060","FYPO:0002058","FYPO:0000139","FYPO:0002057","FYPO:0005447","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_01242:allele-1"}


id: SJAG_01330:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mad2","product":"mitotic spindle checkpoint protein Mad2","uniquename":"SJAG_01330"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mad2delta","display_uniquename":"mad2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01330:allele-1","expression":"Null"}]}]}],"name":"mad2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0000298","FYPO:0000631","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished mitotic spindle assembly checkpoint","termid":"FYPO:0004318"}],"references_by_uniquename":{},"uniquename":"SJAG_01330:allele-1"}


id: SJAG_01355:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"cox6","product":"cytochrome c oxidase subunit VI","uniquename":"SJAG_01355"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cox6delta","display_uniquename":"cox6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01355:allele-1","expression":"Null"}]}]}],"name":"cox6delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000257","FYPO:0000301"],"is_obsolete":false,"name":"normal mating","termid":"FYPO:0000760"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal spore germination","termid":"FYPO:0000579"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal sporulation","termid":"FYPO:0000590"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0000257","FYPO:0000139","FYPO:0002058","FYPO:0002057","FYPO:0000003","FYPO:0002060"],"is_obsolete":false,"name":"normal vegetative cell population growth","termid":"FYPO:0001357"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002060","FYPO:0002058","FYPO:0000139","FYPO:0002057","FYPO:0005447","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_01355:allele-1"}


id: SJAG_01374:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nup132","product":"nucleoporin, WD repeat Nup132","uniquename":"SJAG_01374"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nup132delta","display_uniquename":"nup132delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01374:allele-1","expression":"Null"}]}]}],"name":"nup132delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal nuclear pore localization","termid":"FYPO:0003973"}],"references_by_uniquename":{},"uniquename":"SJAG_01374:allele-1"}


id: SJAG_01410:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad51","product":"RecA family recombinase Rad51/Rhp51","uniquename":"SJAG_01410"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad51delta","display_uniquename":"rad51delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01410:allele-1","expression":"Null"}]}]}],"name":"rad51delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0001985","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"}],"references_by_uniquename":{},"uniquename":"SJAG_01410:allele-1"}


id: SJAG_01458:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"acb1","product":"fatty-acyl-CoA binding protein Acb1","uniquename":"SJAG_01458"},"genes_by_uniquename":{},"genotypes":[{"display_name":"acb1delta","display_uniquename":"acb1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01458:allele-1","expression":"Null"}]}]}],"name":"acb1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000652","FYPO:0000257","FYPO:0000654"],"is_obsolete":false,"name":"normal fatty acid synthase activity","termid":"FYPO:0000719"}],"references_by_uniquename":{},"uniquename":"SJAG_01458:allele-1"}


id: SJAG_01539:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nde1","product":"external mitochondrial NADH dehydrogenase (ubiquinone) Nde1/Nde2","uniquename":"SJAG_01539"},"genes_by_uniquename":{},"genotypes":[],"name":"nde1delta","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_01539:allele-1"}


id: SJAG_01605:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad9","product":"checkpoint clamp complex protein Rad9","uniquename":"SJAG_01605"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad9delta","display_uniquename":"rad9delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01605:allele-1","expression":"Null"}]}]}],"name":"rad9delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0001985","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"}],"references_by_uniquename":{},"uniquename":"SJAG_01605:allele-1"}


id: SJAG_01680:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"chk1","product":"Chk1 protein kinase","uniquename":"SJAG_01680"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chk1delta","display_uniquename":"chk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-1","expression":"Null"}]}]},{"display_name":"chk1delta crb2delta","display_uniquename":"chk1delta__crb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01205:allele-1","expression":"Null"}]}]}],"name":"chk1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0001985","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"}],"references_by_uniquename":{},"uniquename":"SJAG_01680:allele-1"}


id: SJAG_01680:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"P470L","gene":{"name":"chk1","product":"Chk1 protein kinase","uniquename":"SJAG_01680"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chk1-P470L(aa)","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"chk1-P470L(aa) rad24delta","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}]}],"name":"chk1-P470L","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased invasive hyphal growth","termid":"FYPO:0007774"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"}],"references_by_uniquename":{},"synonyms":[{"name":"chk1- hyperactive (chk1-hyp)","reference":"PMID:23090706","type":"exact"},{"name":"chk1-hyperactive (chk1-hyp)","reference":"PMID:20368354","type":"exact"}],"uniquename":"SJAG_01680:allele-2"}


id: SJAG_01718:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"byr2","product":"MAP kinase kinase kinase Byr2","uniquename":"SJAG_01718"},"genes_by_uniquename":{},"genotypes":[{"display_name":"byr2delta","display_uniquename":"byr2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01718:allele-1","expression":"Null"}]}]}],"name":"byr2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_01718:allele-1"}


id: SJAG_01745:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"lem2","product":"LEM domain nuclear inner membrane protein Heh1/Lem2","uniquename":"SJAG_01745"},"genes_by_uniquename":{},"genotypes":[{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]}],"name":"lem2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0002403","FYPO:0005447"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology during mitosis","termid":"FYPO:0003779"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization","termid":"FYPO:0001375"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"protein mislocalized to endoplasmic reticulum during vegetative growth","termid":"FYPO:0003657"}],"references_by_uniquename":{},"uniquename":"SJAG_01745:allele-1"}


id: SJAG_01753:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mdh1","product":"malate dehydrogenase Mdh1","uniquename":"SJAG_01753"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mdh1delta","display_uniquename":"mdh1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01753:allele-1","expression":"Null"}]}]}],"name":"mdh1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_01753:allele-1"}


id: SJAG_01787:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pck1","product":"protein kinase C (PKC)-like Pck1","uniquename":"SJAG_01787"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pck1delta","display_uniquename":"pck1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]}]},{"display_name":"pck1delta pmk1delta","display_uniquename":"pck1delta__pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]}],"name":"pck1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased hyphal length","termid":"FYPO:0007775"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased mycelial expansion","termid":"FYPO:0007779"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002494","FYPO:0001985","FYPO:0002274","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased protein phosphorylation during vegetative growth","termid":"FYPO:0001038"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0002682","FYPO:0000003"],"is_obsolete":false,"name":"resistance to caspofungin","termid":"FYPO:0005152"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0002683","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to tacrolimus and magnesium chloride","termid":"FYPO:0007522"}],"references_by_uniquename":{},"uniquename":"SJAG_01787:allele-1"}


id: SJAG_01794:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"scd2","product":"Cdc42 GTPase complex scaffold subunit Scd2","uniquename":"SJAG_01794"},"genes_by_uniquename":{},"genotypes":[{"display_name":"scd2delta","display_uniquename":"scd2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01794:allele-1","expression":"Null"}]}]}],"name":"scd2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0002058","FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002057","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000004","FYPO:0000005","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"references_by_uniquename":{},"uniquename":"SJAG_01794:allele-1"}


id: SJAG_01834:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pom152","product":"nucleoporin, transmembrane ring glycoprotein subunit Pom152","uniquename":"SJAG_01834"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pom152delta","display_uniquename":"pom152delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01834:allele-1","expression":"Null"}]}]}],"name":"pom152delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","termid":"FYPO:0004890"}],"references_by_uniquename":{},"uniquename":"SJAG_01834:allele-1"}


id: SJAG_01906:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nem1","product":"serine/threonine protein phosphatase (Nem1-Spo7 complex) catalytic subunit Nem1","uniquename":"SJAG_01906"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nem1delta","display_uniquename":"nem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01906:allele-1","expression":"Null"}]}]}],"name":"nem1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0002403"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"uniquename":"SJAG_01906:allele-1"}


id: SJAG_01946:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"cem1","product":"3-oxoacyl-[acyl-carrier-protein]-synthase condensing enzyme Cem1","uniquename":"SJAG_01946"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts) cem1delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]},{"display_name":"cem1delta","display_uniquename":"cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]}],"name":"cem1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0002057","FYPO:0002058","FYPO:0002060","FYPO:0000139","FYPO:0005447","FYPO:0000003"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000257","FYPO:0002057","FYPO:0000139","FYPO:0002058","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"}],"references_by_uniquename":{},"uniquename":"SJAG_01946:allele-1"}


id: SJAG_01956:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"E405K ts","gene":{"name":"nuc2","product":"anaphase-promoting complex TPR lobe subcomplex subunit Apc3","uniquename":"SJAG_01956"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"nuc2-1051","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000631"],"is_obsolete":false,"name":"increased duration of mitotic anaphase","secondary_identifiers":["FYPO:0000617"],"termid":"FYPO:0000618"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0000002","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased protein level during vegetative growth","secondary_identifiers":["FYPO:0000762"],"termid":"FYPO:0001327"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0002057","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"loss of viability at high temperature","termid":"FYPO:0001387"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"mitotic metaphase/anaphase transition delay","secondary_identifiers":["FYPO:0000393","FYPO:0004309"],"termid":"FYPO:0000324"}],"references_by_uniquename":{},"uniquename":"SJAG_01956:allele-1"}


id: SJAG_02007:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"etr1","product":"enoyl-[acyl-carrier protein] reductase","uniquename":"SJAG_02007"},"genes_by_uniquename":{},"genotypes":[],"name":"etr1delta","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_02007:allele-1"}


id: SJAG_02013:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pyp1","product":"protein tyrosine phosphatase Pyp1","uniquename":"SJAG_02013"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pyp1delta","display_uniquename":"pyp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02013:allele-1","expression":"Null"}]}]}],"name":"pyp1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal branching","termid":"FYPO:0007778"},{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0001320","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable small vegetative cell","termid":"FYPO:0000648"}],"references_by_uniquename":{},"uniquename":"SJAG_02013:allele-1"}


id: SJAG_02252:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ace2","product":"DNA-binding transcription factor Ace2","uniquename":"SJAG_02252"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ace2delta","display_uniquename":"ace2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02252:allele-1","expression":"Null"}]}]}],"name":"ace2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abolished cell separation after cytokinesis","termid":"FYPO:0006557"}],"references_by_uniquename":{},"uniquename":"SJAG_02252:allele-1"}


id: SJAG_02266:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad24","product":"14-3-3 protein Rad24","uniquename":"SJAG_02266"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chk1-P470L(aa) rad24delta","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}]},{"display_name":"rad24delta","display_uniquename":"rad24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}]}],"name":"rad24delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"}],"references_by_uniquename":{},"uniquename":"SJAG_02266:allele-1"}


id: SJAG_02342:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wis1","product":"MAP kinase kinase Wis1","uniquename":"SJAG_02342"},"genes_by_uniquename":{},"genotypes":[{"display_name":"wis1delta","display_uniquename":"wis1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02342:allele-1","expression":"Null"}]}]}],"name":"wis1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02342:allele-1"}


id: SJAG_02379:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"gap1","product":"RasGAP Gap1","uniquename":"SJAG_02379"},"genes_by_uniquename":{},"genotypes":[{"display_name":"gap1delta","display_uniquename":"gap1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02379:allele-1","expression":"Null"}]}]}],"name":"gap1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02379:allele-1"}


id: SJAG_02392:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pom1","product":"DYRK family cell polarity protein kinase Pom1","uniquename":"SJAG_02392"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}],"name":"pom1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein localization to medial cortex during vegetative growth","termid":"FYPO:0000731"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abnormally monopolar protein localization to cell tip","termid":"FYPO:0005503"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to medial cortex during mitotic interphase","termid":"FYPO:0007177"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000032","FYPO:0004803","FYPO:0005447","FYPO:0000138","FYPO:0000631","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"actomyosin contractile ring displaced from midpoint","termid":"FYPO:0002026"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"decreased bipolar index","termid":"FYPO:0003535"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0004803","FYPO:0005447","FYPO:0000002","FYPO:0000032","FYPO:0001985","FYPO:0000631","FYPO:0001320"],"is_obsolete":false,"name":"delayed onset of actomyosin contractile ring assembly","termid":"FYPO:0000729"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"mislocalized hyphal septum","termid":"FYPO:0007801"}],"references_by_uniquename":{},"uniquename":"SJAG_02392:allele-1"}


id: SJAG_02409:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"stc1","product":"CLRC complex-Argonaute linker protein Stc1","uniquename":"SJAG_02409"},"genes_by_uniquename":{},"genotypes":[{"display_name":"stc1delta","display_uniquename":"stc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02409:allele-1","expression":"Null"}]}]}],"name":"stc1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002059","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_02409:allele-1"}


id: SJAG_02486:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ste6","product":"RasGEF Ste6","uniquename":"SJAG_02486"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ste6delta","display_uniquename":"ste6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02486:allele-1","expression":"Null"}]}]}],"name":"ste6delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02486:allele-1"}


id: SJAG_02527:allele-1
data:
  {"allele_type":"disruption","alleles_by_uniquename":{},"description":"RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage","gene":{"name":"lig4","product":"DNA repair ligase Lig4","uniquename":"SJAG_02527"},"genes_by_uniquename":{},"genotypes":[{"display_name":"lig4::KanMX6(RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage)[Knockdown]","display_uniquename":"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02527:allele-1","expression":"Knockdown"}]}]}],"name":"lig4::KanMX6","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"increased flocculation during vegetative growth","termid":"FYPO:0009111"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"increased sporulation frequency","termid":"FYPO:0000588"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0001985"],"is_obsolete":false,"name":"loss of viability following cellular response to UV","termid":"FYPO:0005705"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0002057"],"is_obsolete":false,"name":"loss of viability in stationary phase upon glucose starvation","termid":"FYPO:0005231"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0002683","FYPO:0005447","FYPO:0001985","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to caffeine during vegetative growth","termid":"FYPO:0000097"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0002060","FYPO:0005447","FYPO:0002058","FYPO:0002057","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to heat shock","termid":"FYPO:0001408"}],"references_by_uniquename":{},"uniquename":"SJAG_02527:allele-1"}


id: SJAG_02576:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad25","product":"14-3-3 protein Rad25","uniquename":"SJAG_02576"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad25delta","display_uniquename":"rad25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02576:allele-1","expression":"Null"}]}]}],"name":"rad25delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"}],"references_by_uniquename":{},"uniquename":"SJAG_02576:allele-1"}


id: SJAG_02592:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"sty1","product":"MAP kinase Sty1","uniquename":"SJAG_02592"},"genes_by_uniquename":{},"genotypes":[{"display_name":"SJAG_00124delta sty1delta","display_uniquename":"SJAG_00124delta__sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00124:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]},{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}],"name":"sty1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0004803","FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001320","FYPO:0000032"],"is_obsolete":false,"name":"abolished actomyosin contractile ring assembly, clumped medial cortical nodes","termid":"FYPO:0002998"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002057","FYPO:0000139","FYPO:0001985","FYPO:0000003","FYPO:0005447","FYPO:0002060","FYPO:0002058"],"is_obsolete":false,"name":"abolished cell population growth at high temperature","termid":"FYPO:0004481"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased quorum sensing response","termid":"FYPO:0007824"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"elongated vegetative cell","termid":"FYPO:0001122"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased hyphal branching","termid":"FYPO:0007777"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased hyphal length","termid":"FYPO:0007775"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased invasive hyphal growth","termid":"FYPO:0007774"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased mycelial expansion","termid":"FYPO:0007779"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002494","FYPO:0000002","FYPO:0002274"],"is_obsolete":false,"name":"increased protein phosphorylation","termid":"FYPO:0002680"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0002683","FYPO:0005447","FYPO:0001985","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to caffeine during vegetative growth","termid":"FYPO:0000097"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003","FYPO:0002683","FYPO:0001985","FYPO:0000139","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to latrunculin A","termid":"FYPO:0000107"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000003","FYPO:0005447","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to oxidative stress","termid":"FYPO:0000726"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to salt stress","termid":"FYPO:0000271"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02592:allele-1"}


id: SJAG_02594:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"arb1","product":"argonaute inhibitor protein 1","uniquename":"SJAG_02594"},"genes_by_uniquename":{},"genotypes":[{"display_name":"arb1delta","display_uniquename":"arb1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02594:allele-1","expression":"Null"}]}]}],"name":"arb1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002059","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_02594:allele-1"}


id: SJAG_02621:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ago1","product":"argonaute","uniquename":"SJAG_02621"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ago1delta","display_uniquename":"ago1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]}]},{"display_name":"ago1delta leo1delta","display_uniquename":"ago1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]}],"name":"ago1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0006551","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased centromeric transcript level","termid":"FYPO:0004982"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0006551","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased telomeric transcript level","termid":"FYPO:0004573"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002059","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal histone H3-K9 dimethylation at transposable element during vegetative growth","termid":"FYPO:0006989"},{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_02621:allele-1"}


id: SJAG_02668:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"R77W","gene":{"name":"mpe1","product":"mRNA cleavage ubiquitin-protein ligase E3 Mpe1","uniquename":"SJAG_02668"},"genes_by_uniquename":{},"genotypes":[{"display_name":"dcr1delta mpe1-R77W(aa)","display_uniquename":"dcr1delta__mpe1-R77W-R77W-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02668:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"mpe1-R77W","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_02668:allele-1"}


id: SJAG_02695:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"tip1","product":"CLIP170 family protein Tip1","uniquename":"SJAG_02695"},"genes_by_uniquename":{},"genotypes":[{"display_name":"tip1delta","display_uniquename":"tip1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02695:allele-1","expression":"Null"}]}]}],"name":"tip1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"mislocalized septum","termid":"FYPO:0004293"}],"references_by_uniquename":{},"uniquename":"SJAG_02695:allele-1"}


id: SJAG_02763:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1delta","display_uniquename":"ned1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-1","expression":"Null"}]}]}],"name":"ned1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0002403"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002060","FYPO:0002058","FYPO:0000139","FYPO:0002057","FYPO:0005447","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_02763:allele-1"}


id: SJAG_02763:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"D422E,D424E","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1cat(D422E,D424E aa)","display_uniquename":"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"ned1cat","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0002403"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"synonyms":[{"name":"Catalytic mutant","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-2"}


id: SJAG_02763:allele-3
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"S235A; S651","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1S235A/S651(S235A; S651 aa)","display_uniquename":"ned1S235A_S651-S235A__S651-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"ned1S235A/S651","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased lipid droplet formation","termid":"FYPO:0006945"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal nuclear envelope morphology","termid":"FYPO:0003751"}],"references_by_uniquename":{},"synonyms":[{"name":"refractory to phosphorylation","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-3"}


id: SJAG_02763:allele-4
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"S235E; S651E","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1S235E/S651E(S235E; S651E aa)","display_uniquename":"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-4","expression":"Not assayed or wild type"}]}]}],"name":"ned1S235E/S651E","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased lipid droplet formation","termid":"FYPO:0006054"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0002403"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"}


id: SJAG_02763:allele-5
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"S499E; S538E; T620E; T638E; S651E","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1-5E(S499E; S538E; T620E; T638E; S651E aa)","display_uniquename":"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-5","expression":"Not assayed or wild type"}]}]}],"name":"ned1-5E","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased lipid droplet formation","termid":"FYPO:0006054"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0002403"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"uniquename":"SJAG_02763:allele-5"}


id: SJAG_02763:allele-6
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"S499A; S538A; T620A; T638A; S651A","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1-5A(S499A; S538A; T620A; T638A; S651A aa)","display_uniquename":"ned1-5A-S499A__S538A__T620A__T638A__S651A-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-6","expression":"Not assayed or wild type"}]}]}],"name":"ned1-5A","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased lipid droplet formation","termid":"FYPO:0006945"}],"references_by_uniquename":{},"synonyms":[{"name":"refractory to potential proline-directed kinase phosphorylation","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-6"}


id: SJAG_02771:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad1","product":"checkpoint clamp complex protein Rad1","uniquename":"SJAG_02771"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad1delta","display_uniquename":"rad1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02771:allele-1","expression":"Null"}]}]}],"name":"rad1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"}],"references_by_uniquename":{},"uniquename":"SJAG_02771:allele-1"}


id: SJAG_02796:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"A343T","gene":{"name":"pyk1","product":"pyruvate kinase","uniquename":"SJAG_02796"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pyk1-A343T(aa)","display_uniquename":"pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02796:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"pyk1-A343T","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000661","FYPO:0000707","FYPO:0000654","FYPO:0000652"],"is_obsolete":false,"name":"abnormal pyruvate kinase activity","termid":"FYPO:0007363"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal glucose consumption","termid":"FYPO:0004165"}],"references_by_uniquename":{},"uniquename":"SJAG_02796:allele-1"}


id: SJAG_02819:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"efc25","product":"Ras1 GEF Efc25","uniquename":"SJAG_02819"},"genes_by_uniquename":{},"genotypes":[{"display_name":"efc25delta","display_uniquename":"efc25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02819:allele-1","expression":"Null"}]}]}],"name":"efc25delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"decreased sporulation frequency","termid":"FYPO:0000584"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000004","FYPO:0000005","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"references_by_uniquename":{},"uniquename":"SJAG_02819:allele-1"}


id: SJAG_02860:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wcs1","product":"blue light photoreceptor Wcs1","uniquename":"SJAG_02860"},"genes_by_uniquename":{},"genotypes":[{"display_name":"wcs1delta","display_uniquename":"wcs1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02860:allele-1","expression":"Null"}]}]}],"name":"wcs1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000298","FYPO:0000002"],"is_obsolete":false,"name":"abnormal blue light response","termid":"FYPO:0008031"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003"],"is_obsolete":false,"name":"decreased sexual agglutination in response to blue light","termid":"FYPO:0008046"}],"references_by_uniquename":{},"uniquename":"SJAG_02860:allele-1"}


id: SJAG_02923:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"spk1","product":"MAP kinase Spk1","uniquename":"SJAG_02923"},"genes_by_uniquename":{},"genotypes":[{"display_name":"spk1delta","display_uniquename":"spk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02923:allele-1","expression":"Null"}]}]}],"name":"spk1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":25,"genotype_count":31,"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"abnormal hyphal growth","termid":"FYPO:0007773"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02923:allele-1"}


id: SJAG_03048:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"G146D","gene":{"name":"cdc2","product":"cyclin-dependent protein kinase Cdk1/Cdc2","uniquename":"SJAG_03048"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cdc2-1w(G146D aa)","display_uniquename":"cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03048:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"cdc2-1w","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0001320","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable small vegetative cell","termid":"FYPO:0000648"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000004","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000005"],"is_obsolete":false,"name":"viable thin vegetative cell","termid":"FYPO:0001877"}],"references_by_uniquename":{},"uniquename":"SJAG_03048:allele-1"}


id: SJAG_03118:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"leo1","product":"RNA polymerase II associated Paf1 complex subunit Leo1","uniquename":"SJAG_03118"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ago1delta leo1delta","display_uniquename":"ago1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},{"display_name":"clr4delta leo1delta","display_uniquename":"clr4delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04574:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},{"display_name":"dcr1delta leo1delta","display_uniquename":"dcr1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]}],"name":"leo1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0006551","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased centromeric transcript level","termid":"FYPO:0004982"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0006551","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased telomeric transcript level","termid":"FYPO:0004573"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002059","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal histone H3-K9 dimethylation at transposable element during vegetative growth","termid":"FYPO:0006989"},{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_03118:allele-1"}


id: SJAG_03118:allele-2
data:
  {"allele_type":"nonsense_mutation","alleles_by_uniquename":{},"description":"aa61->stop","gene":{"name":"leo1","product":"RNA polymerase II associated Paf1 complex subunit Leo1","uniquename":"SJAG_03118"},"genes_by_uniquename":{},"genotypes":[{"display_name":"dcr1delta frameshift(aa61->stop)","display_uniquename":"dcr1delta__frameshift-aa61->stop-nonsense_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"frameshift","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_03118:allele-2"}


id: SJAG_03143:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"sep1","product":"DNA-binding forkhead transcription factor Sep1","uniquename":"SJAG_03143"},"genes_by_uniquename":{},"genotypes":[{"display_name":"sep1delta","display_uniquename":"sep1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03143:allele-1","expression":"Null"}]}]}],"name":"sep1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abolished cell separation after cytokinesis","termid":"FYPO:0006557"}],"references_by_uniquename":{},"uniquename":"SJAG_03143:allele-1"}


id: SJAG_03164:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ura4","product":"orotidine 5'-phosphate decarboxylase Ura4","uniquename":"SJAG_03164"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ura4delta","display_uniquename":"ura4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03164:allele-1","expression":"Null"}]}]}],"name":"ura4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"growth auxotrophic for uracil","termid":"FYPO:0001012"}],"references_by_uniquename":{},"uniquename":"SJAG_03164:allele-1"}


id: SJAG_03198:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"oar2","product":"3-oxoacyl-[acyl-carrier-protein] reductase Oar2","uniquename":"SJAG_03198"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts) oar2delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]},{"display_name":"oar2delta","display_uniquename":"oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]}],"name":"oar2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0002057","FYPO:0002058","FYPO:0002060","FYPO:0000139","FYPO:0005447","FYPO:0000003"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000257","FYPO:0002057","FYPO:0000139","FYPO:0002058","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"}],"references_by_uniquename":{},"uniquename":"SJAG_03198:allele-1"}


id: SJAG_03198:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"Y189D cold sensitive","gene":{"name":"oar2","product":"3-oxoacyl-[acyl-carrier-protein] reductase Oar2","uniquename":"SJAG_03198"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts) oar2-51(Y189D cold sensitive)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"oar2-51(Y189D cold sensitive)[Overexpression]","display_uniquename":"oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Overexpression"}]}]}],"name":"oar2-51","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0002057","FYPO:0002058","FYPO:0002060","FYPO:0000139","FYPO:0005447","FYPO:0000003"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000257","FYPO:0002057","FYPO:0000139","FYPO:0002058","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"}],"references_by_uniquename":{},"uniquename":"SJAG_03198:allele-2"}


id: SJAG_03198:allele-3
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"R72A,L75A,R106A,L109A","gene":{"name":"oar2","product":"3-oxoacyl-[acyl-carrier-protein] reductase Oar2","uniquename":"SJAG_03198"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts) oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]},{"display_name":"oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]}],"name":"oar2-dm12","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0002057","FYPO:0002058","FYPO:0002060","FYPO:0000139","FYPO:0005447","FYPO:0000003"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000257","FYPO:0002057","FYPO:0000139","FYPO:0002058","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"}],"references_by_uniquename":{},"synonyms":[{"name":"destruction box mutations","reference":"PMID:23786411","type":"exact"}],"uniquename":"SJAG_03198:allele-3"}


id: SJAG_03250:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"sst4","product":"sorting receptor for ubiquitinated membrane proteins, ESCRT 0 complex subunit Sst4","uniquename":"SJAG_03250"},"genes_by_uniquename":{},"genotypes":[{"display_name":"sst4delta","display_uniquename":"sst4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03250:allele-1","expression":"Null"}]}]}],"name":"sst4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein complex localization","termid":"FYPO:0001440"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal nuclear envelope morphology during mitosis","termid":"FYPO:0003780"}],"references_by_uniquename":{},"uniquename":"SJAG_03250:allele-1"}


id: SJAG_03351:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"A186T ts","gene":{"name":"cut23","product":"anaphase-promoting complex TPR lobe subcomplex subunit Apc8","uniquename":"SJAG_03351"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"cut23-415","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000631"],"is_obsolete":false,"name":"increased duration of mitotic anaphase","secondary_identifiers":["FYPO:0000617"],"termid":"FYPO:0000618"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0000002","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased protein level during vegetative growth","secondary_identifiers":["FYPO:0000762"],"termid":"FYPO:0001327"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0002057","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"loss of viability at high temperature","termid":"FYPO:0001387"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"mitotic metaphase/anaphase transition delay","secondary_identifiers":["FYPO:0000393","FYPO:0004309"],"termid":"FYPO:0000324"}],"references_by_uniquename":{},"uniquename":"SJAG_03351:allele-1"}


id: SJAG_03356:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rdp1","product":"RNA-directed RNA polymerase (RDRC) Rdp1","uniquename":"SJAG_03356"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rdp1delta","display_uniquename":"rdp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03356:allele-1","expression":"Null"}]}]}],"name":"rdp1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002059","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_03356:allele-1"}


id: SJAG_03384:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wis4","product":"MAP kinase kinase kinase Wis4","uniquename":"SJAG_03384"},"genes_by_uniquename":{},"genotypes":[{"display_name":"wis4delta","display_uniquename":"wis4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03384:allele-1","expression":"Null"}]}]}],"name":"wis4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_03384:allele-1"}


id: SJAG_03444:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"agn1","product":"cell wall glucan endo-1,3-alpha-glucosidase Agn1","uniquename":"SJAG_03444"},"genes_by_uniquename":{},"genotypes":[{"display_name":"agn1delta","display_uniquename":"agn1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03444:allele-1","expression":"Null"}]}]}],"name":"agn1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal cell separation after cytokinesis resulting in chained cells","termid":"FYPO:0001971"}],"references_by_uniquename":{},"uniquename":"SJAG_03444:allele-1"}


id: SJAG_03449:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"man1","product":"LEM domain nuclear inner membrane protein Man1, Sad1 interacting factor","uniquename":"SJAG_03449"},"genes_by_uniquename":{},"genotypes":[{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]}],"name":"man1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0002403","FYPO:0005447"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology during mitosis","termid":"FYPO:0003779"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000337","FYPO:0005447","FYPO:0000641","FYPO:0001320","FYPO:0000631"],"is_obsolete":false,"name":"abnormal rDNA separation","termid":"FYPO:0000671"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","termid":"FYPO:0004890"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002060","FYPO:0002058","FYPO:0000139","FYPO:0002057","FYPO:0005447","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"unequal nucleolus inheritance","termid":"FYPO:0004683"}],"references_by_uniquename":{},"uniquename":"SJAG_03449:allele-1"}


id: SJAG_03449:allele-2
data:
  {"allele_type":"partial_amino_acid_deletion","alleles_by_uniquename":{},"description":"man1DHEH","gene":{"name":"man1","product":"LEM domain nuclear inner membrane protein Man1, Sad1 interacting factor","uniquename":"SJAG_03449"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Man1DHEH(man1DHEH)","display_uniquename":"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"Man1DHEH","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0002403","FYPO:0005447"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology during mitosis","termid":"FYPO:0003779"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000337","FYPO:0005447","FYPO:0000641","FYPO:0001320","FYPO:0000631"],"is_obsolete":false,"name":"abnormal rDNA separation","termid":"FYPO:0000671"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","termid":"FYPO:0004890"}],"references_by_uniquename":{},"uniquename":"SJAG_03449:allele-2"}


id: SJAG_03449:allele-3
data:
  {"allele_type":"amino_acid_insertion_and_deletion","alleles_by_uniquename":{},"description":"man1-1-488","gene":{"name":"man1","product":"LEM domain nuclear inner membrane protein Man1, Sad1 interacting factor","uniquename":"SJAG_03449"},"genes_by_uniquename":{},"genotypes":[{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"man1-1-488","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0002403","FYPO:0005447"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology during mitosis","termid":"FYPO:0003779"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000337","FYPO:0005447","FYPO:0000641","FYPO:0001320","FYPO:0000631"],"is_obsolete":false,"name":"abnormal rDNA separation","termid":"FYPO:0000671"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","termid":"FYPO:0004890"}],"references_by_uniquename":{},"uniquename":"SJAG_03449:allele-3"}


id: SJAG_03453:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ras1","product":"GTPase Ras1","uniquename":"SJAG_03453"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ras1delta","display_uniquename":"ras1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03453:allele-1","expression":"Null"}]}]}],"name":"ras1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0002058","FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002057","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000004","FYPO:0000005","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"references_by_uniquename":{},"uniquename":"SJAG_03453:allele-1"}


id: SJAG_03575:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"E548K ts","gene":{"name":"apc2","product":"anaphase-promoting complex cullin family subunit Apc2","uniquename":"SJAG_03575"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"apc2-361(E548K ts) cem1delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]},{"display_name":"apc2-361(E548K ts) oar2-51(Y189D cold sensitive)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"apc2-361(E548K ts) oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]},{"display_name":"apc2-361(E548K ts) oar2delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]}],"name":"apc2-361","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000631"],"is_obsolete":false,"name":"increased duration of mitotic anaphase","secondary_identifiers":["FYPO:0000617"],"termid":"FYPO:0000618"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0000002","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased protein level during vegetative growth","secondary_identifiers":["FYPO:0000762"],"termid":"FYPO:0001327"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0002057","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"loss of viability at high temperature","termid":"FYPO:0001387"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"mitotic metaphase/anaphase transition delay","secondary_identifiers":["FYPO:0000393","FYPO:0004309"],"termid":"FYPO:0000324"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000257","FYPO:0002057","FYPO:0000139","FYPO:0002058","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"unequal nucleolus inheritance","termid":"FYPO:0004683"}],"references_by_uniquename":{},"uniquename":"SJAG_03575:allele-1"}


id: SJAG_03581:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"gef1","product":"RhoGEF for Cdc42 (Gef1)","uniquename":"SJAG_03581"},"genes_by_uniquename":{},"genotypes":[{"display_name":"gef1delta","display_uniquename":"gef1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03581:allele-1","expression":"Null"}]}]}],"name":"gef1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000004","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000005"],"is_obsolete":false,"name":"viable thin vegetative cell","termid":"FYPO:0001877"}],"references_by_uniquename":{},"uniquename":"SJAG_03581:allele-1"}


id: SJAG_03596:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"L264P,P442T","gene":{"name":"cdc15","product":"F-BAR domain protein Cdc15","uniquename":"SJAG_03596"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cdc15-A(L264P,P442T aa)","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"cdc15-A(L264P,P442T aa) mid1delta","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type__mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]}],"name":"cdc15-A","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000032","FYPO:0001320","FYPO:0004803","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"abnormal actomyosin contractile ring myosin filament organization","termid":"FYPO:0000231"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"delayed onset of protein localization to cell division site","termid":"FYPO:0003946"}],"references_by_uniquename":{},"uniquename":"SJAG_03596:allele-1"}


id: SJAG_03689:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"dcr1","product":"dicer","uniquename":"SJAG_03689"},"genes_by_uniquename":{},"genotypes":[{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]},{"display_name":"dcr1delta frameshift(aa61->stop)","display_uniquename":"dcr1delta__frameshift-aa61->stop-nonsense_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"dcr1delta leo1delta","display_uniquename":"dcr1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},{"display_name":"dcr1delta mpe1-R77W(aa)","display_uniquename":"dcr1delta__mpe1-R77W-R77W-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02668:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"dcr1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0006551","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased siRNA level","termid":"FYPO:0004205"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0006551","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased centromeric transcript level","termid":"FYPO:0004982"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"increased rate of transposition","termid":"FYPO:0000595"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0006551","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased telomeric transcript level","termid":"FYPO:0004573"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002059","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal histone H3-K9 dimethylation at transposable element during vegetative growth","termid":"FYPO:0006989"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal transposition","termid":"FYPO:0000596"},{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_03689:allele-1"}


id: SJAG_03720:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"tel1","product":"ATM checkpoint kinase","uniquename":"SJAG_03720"},"genes_by_uniquename":{},"genotypes":[{"display_name":"tel1delta","display_uniquename":"tel1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03720:allele-1","expression":"Null"}]}]}],"name":"tel1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased invasive hyphal growth","termid":"FYPO:0007774"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0002058","FYPO:0000139","FYPO:0002060","FYPO:0000257"],"is_obsolete":false,"name":"normal growth on camptothecin","termid":"FYPO:0001690"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000257","FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"normal viability following cellular response to hydroxyurea","termid":"FYPO:0004693"}],"references_by_uniquename":{},"uniquename":"SJAG_03720:allele-1"}


id: SJAG_03753:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mkh1","product":"MEK kinase (MEKK) Mkh1","uniquename":"SJAG_03753"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mkh1delta","display_uniquename":"mkh1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03753:allele-1","expression":"Null"}]}]}],"name":"mkh1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_03753:allele-1"}


id: SJAG_03783:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps24","product":"ESCRT III complex subunit Vps24","uniquename":"SJAG_03783"},"genes_by_uniquename":{},"genotypes":[{"display_name":"vps24delta","display_uniquename":"vps24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03783:allele-1","expression":"Null"}]}]}],"name":"vps24delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":18,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein localization","termid":"FYPO:0001370"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"}],"references_by_uniquename":{},"uniquename":"SJAG_03783:allele-1"}


id: SJAG_03891:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"alx1","product":"ESCRT-III regulator Alx1","uniquename":"SJAG_03891"},"genes_by_uniquename":{},"genotypes":[{"display_name":"alx1delta","display_uniquename":"alx1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03891:allele-1","expression":"Null"}]}]}],"name":"alx1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"}],"references_by_uniquename":{},"uniquename":"SJAG_03891:allele-1"}


id: SJAG_03891:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"E308V","gene":{"name":"alx1","product":"ESCRT-III regulator Alx1","uniquename":"SJAG_03891"},"genes_by_uniquename":{},"genotypes":[],"name":"rim20E308V","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_03891:allele-2"}


id: SJAG_03892:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps4","product":"AAA family ATPase Vps4","uniquename":"SJAG_03892"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nur1delta vps4delta","display_uniquename":"nur1delta__vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]},{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}],"name":"vps4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein localization to heterochromatin","termid":"FYPO:0004718"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to heterochromatin during vegetative growth","termid":"FYPO:0001132"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased telomere tethering at nuclear periphery during mitosis","termid":"FYPO:0007770"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002060","FYPO:0002058","FYPO:0000139","FYPO:0002057","FYPO:0005447","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_03892:allele-1"}


id: SJAG_03892:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"E233Q","gene":{"name":"vps4","product":"AAA family ATPase Vps4","uniquename":"SJAG_03892"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Vps4-EQ(E233Q aa)","display_uniquename":"Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"Vps4-EQ","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"}],"references_by_uniquename":{},"uniquename":"SJAG_03892:allele-2"}


id: SJAG_03892:allele-3
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"I307T L327S","gene":{"name":"vps4","product":"AAA family ATPase Vps4","uniquename":"SJAG_03892"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cmp7delta vps4-ts(I307T L327S aa)","display_uniquename":"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]},{"display_name":"vps4-ts(I307T L327S aa)","display_uniquename":"vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"vps4-ts","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"}],"references_by_uniquename":{},"uniquename":"SJAG_03892:allele-3"}


id: SJAG_03916:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"chp1","product":"heterochromatin (HP1) family chromodomain protein Chp1","uniquename":"SJAG_03916"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chp1delta","display_uniquename":"chp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03916:allele-1","expression":"Null"}]}]}],"name":"chp1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002059","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_03916:allele-1"}


id: SJAG_03920:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"sdh3","product":"succinate dehydrogenase (ubiquinone) cytochrome b subunit","uniquename":"SJAG_03920"},"genes_by_uniquename":{},"genotypes":[{"display_name":"sdh3delta","display_uniquename":"sdh3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03920:allele-1","expression":"Null"}]}]}],"name":"sdh3delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_03920:allele-1"}


id: SJAG_03940:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nem2","product":"serine/threonine protein phosphatase (Nem1-Spo7 complex) regulatory subunit","uniquename":"SJAG_03940"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nem2delta","display_uniquename":"nem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03940:allele-1","expression":"Null"}]}]}],"name":"nem2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002494","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0002274","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein dephosphorylation during vegetative growth","termid":"FYPO:0005957"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0002403"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"uniquename":"SJAG_03940:allele-1"}


id: SJAG_04009:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ste11","product":"DNA-binding transcription factor Ste11","uniquename":"SJAG_04009"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ste11delta","display_uniquename":"ste11delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04009:allele-1","expression":"Null"}]}]}],"name":"ste11delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0000301","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_04009:allele-1"}


id: SJAG_04061:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"arb2","product":"argonaute binding protein 2","uniquename":"SJAG_04061"},"genes_by_uniquename":{},"genotypes":[{"display_name":"arb2delta","display_uniquename":"arb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04061:allele-1","expression":"Null"}]}]}],"name":"arb2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002059","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_04061:allele-1"}


id: SJAG_04152:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ndi1","product":"internal mitochondrial NADH dehydrogenase (ubiquinone) Ndi1","uniquename":"SJAG_04152"},"genes_by_uniquename":{},"genotypes":[],"name":"ndi1delta","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_04152:allele-1"}


id: SJAG_04280:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"T582G","gene":{"name":"wee1","product":"M phase inhibitor protein kinase Wee1","uniquename":"SJAG_04280"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"rga6delta wee1-as8(T582G aa)","display_uniquename":"rga6delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"wee1-as8(T582G aa)","display_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"wee1-as8","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005568","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0004803"],"is_obsolete":false,"name":"abnormal establishment or maintenance of actin cytoskeleton polarity during vegetative growth","termid":"FYPO:0000198"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abnormally monopolar protein localization to cell tip","termid":"FYPO:0005503"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished geometry scaling","termid":"FYPO:0007783"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased protein localization to non-growing cell tip","termid":"FYPO:0002870"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000631","FYPO:0001320","FYPO:0000032","FYPO:0000002","FYPO:0001985","FYPO:0004803"],"is_obsolete":false,"name":"mislocalized actomyosin contractile ring","termid":"FYPO:0001369"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0001320","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable small vegetative cell","termid":"FYPO:0000648"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000004","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000005"],"is_obsolete":false,"name":"viable thin vegetative cell","termid":"FYPO:0001877"}],"references_by_uniquename":{},"uniquename":"SJAG_04280:allele-1"}


id: SJAG_04280:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"G788E","gene":{"name":"wee1","product":"M phase inhibitor protein kinase Wee1","uniquename":"SJAG_04280"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rga4delta wee1-G788E(aa)","display_uniquename":"rga4delta__wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"wee1-G788E(aa)","display_uniquename":"wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"wee1-G788E","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"mislocalized septum","termid":"FYPO:0004293"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0001320","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable small vegetative cell","termid":"FYPO:0000648"}],"references_by_uniquename":{},"uniquename":"SJAG_04280:allele-2"}


id: SJAG_04280:allele-3
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wee1","product":"M phase inhibitor protein kinase Wee1","uniquename":"SJAG_04280"},"genes_by_uniquename":{},"genotypes":[],"name":"wee1delta","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_04280:allele-3"}


id: SJAG_04284:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nup61","product":"nucleoporin Nup61","uniquename":"SJAG_04284"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nup61delta","display_uniquename":"nup61delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04284:allele-1","expression":"Null"}]}]}],"name":"nup61delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"abnormal cell cycle arrest in mitotic anaphase","termid":"FYPO:0000619"},{"cv_name":"fission_yeast_phenotype","gene_count":11,"genotype_count":16,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal nuclear envelope organization","termid":"FYPO:0000815"}],"references_by_uniquename":{},"uniquename":"SJAG_04284:allele-1"}


id: SJAG_04287:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"cds1","product":"DNA replication checkpoint kinase Cds1","uniquename":"SJAG_04287"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cds1delta","display_uniquename":"cds1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04287:allele-1","expression":"Null"}]}]}],"name":"cds1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"}],"references_by_uniquename":{},"uniquename":"SJAG_04287:allele-1"}


id: SJAG_04312:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pka1","product":"cAMP-dependent protein kinase catalytic subunit Pka1","uniquename":"SJAG_04312"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pka1delta","display_uniquename":"pka1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04312:allele-1","expression":"Null"}]}]}],"name":"pka1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":25,"genotype_count":31,"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"abnormal hyphal growth","termid":"FYPO:0007773"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"elongated vegetative cell","termid":"FYPO:0001122"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002057","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"loss of viability in stationary phase","termid":"FYPO:0000245"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0002683","FYPO:0005447","FYPO:0001985","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to caffeine during vegetative growth","termid":"FYPO:0000097"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000139","FYPO:0002683","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to hydrogen peroxide","termid":"FYPO:0000087"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0000003","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to potassium chloride","termid":"FYPO:0001214"}],"references_by_uniquename":{},"uniquename":"SJAG_04312:allele-1"}


id: SJAG_04332:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"I30T,T572P","gene":{"name":"cdc25","product":"protein tyrosine phosphatase (M phase inducer) Cdc25","uniquename":"SJAG_04332"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cdc25-D9(I30T,T572P aa)","display_uniquename":"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04332:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"cdc25-D9","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002","FYPO:0001320","FYPO:0000005","FYPO:0001985","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"inviable elongated mononucleate cell with cell cycle arrest at mitotic G2/M phase transition","termid":"FYPO:0007701"}],"references_by_uniquename":{},"uniquename":"SJAG_04332:allele-1"}


id: SJAG_04349:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps28","product":"ESCRT I complex subunit Vps28","uniquename":"SJAG_04349"},"genes_by_uniquename":{},"genotypes":[{"display_name":"vps28delta","display_uniquename":"vps28delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04349:allele-1","expression":"Null"}]}]}],"name":"vps28delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein complex localization","termid":"FYPO:0001440"}],"references_by_uniquename":{},"uniquename":"SJAG_04349:allele-1"}


id: SJAG_04464:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"R152C","gene":{"name":"pim1","product":"RCC1 family Ran GEF","uniquename":"SJAG_04464"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"pim1-R152C","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"abnormal cell cycle arrest in mitotic anaphase","termid":"FYPO:0000619"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal mitotic cell cycle arrest with condensed chromosomes","termid":"FYPO:0003738"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000003","FYPO:0002058","FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002060","FYPO:0002057"],"is_obsolete":false,"name":"decreased cell population growth at high temperature","secondary_identifiers":["FYPO:0000247"],"termid":"FYPO:0000082"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"inviable vegetative cell","termid":"FYPO:0001489"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002403","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"inviable vegetative cell with fragmented nuclear envelope during mitotic telophase","termid":"FYPO:0003976"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0002057","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"loss of viability at high temperature","termid":"FYPO:0001387"}],"references_by_uniquename":{},"synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}


id: SJAG_04489:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"did4","product":"ESCRT III complex subunit Did4","uniquename":"SJAG_04489"},"genes_by_uniquename":{},"genotypes":[{"display_name":"did4delta","display_uniquename":"did4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04489:allele-1","expression":"Null"}]}]}],"name":"did4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":18,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein localization","termid":"FYPO:0001370"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"}],"references_by_uniquename":{},"uniquename":"SJAG_04489:allele-1"}


id: SJAG_04522:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rga4","product":"RhoGAP Rga4","uniquename":"SJAG_04522"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rga4delta","display_uniquename":"rga4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]}]},{"display_name":"rga4delta rga6delta","display_uniquename":"rga4delta__rga6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]}]},{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"rga4delta wee1-G788E(aa)","display_uniquename":"rga4delta__wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"rga4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished geometry scaling","termid":"FYPO:0007783"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abolished polar cell growth","termid":"FYPO:0004105"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000631","FYPO:0001320","FYPO:0000032","FYPO:0000002","FYPO:0001985","FYPO:0004803"],"is_obsolete":false,"name":"mislocalized actomyosin contractile ring","termid":"FYPO:0001369"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"mislocalized septum","termid":"FYPO:0004293"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000004","FYPO:0000005"],"is_obsolete":false,"name":"viable vegetative cell with increased cell diameter","termid":"FYPO:0006616"}],"references_by_uniquename":{},"uniquename":"SJAG_04522:allele-1"}


id: SJAG_04551:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pmk1","product":"MAP kinase Pmk1","uniquename":"SJAG_04551"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pck1delta pmk1delta","display_uniquename":"pck1delta__pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]},{"display_name":"pmk1delta","display_uniquename":"pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]}],"name":"pmk1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"multiseptate cell","termid":"FYPO:0004295"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0000003","FYPO:0002682","FYPO:0001985","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002683","FYPO:0001985","FYPO:0005447","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to caspofungin","termid":"FYPO:0000079"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_04551:allele-1"}


id: SJAG_04551:allele-2
data:
  {"allele_type":"amino_acid_insertion","alleles_by_uniquename":{},"description":"82-NITCIYDLDIIINPYNFNEVYIYEE-105","gene":{"name":"pmk1","product":"MAP kinase Pmk1","uniquename":"SJAG_04551"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Pmk1Sj(ins82-105)(82-NITCIYDLDIIINPYNFNEVYIYEE-105)","display_uniquename":"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"Pmk1Sj(ins82-105)","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0002494","FYPO:0002274","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein phosphorylation during vegetative growth","termid":"FYPO:0001838"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0000003","FYPO:0002682","FYPO:0001985","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"}],"references_by_uniquename":{},"uniquename":"SJAG_04551:allele-2"}


id: SJAG_04551:allele-3
data:
  {"allele_type":"other","alleles_by_uniquename":{},"description":"Pmk1 from S. pombe","gene":{"name":"pmk1","product":"MAP kinase Pmk1","uniquename":"SJAG_04551"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Pmk1Sp(Pmk1 from S. pombe)","display_uniquename":"Pmk1Sp-Pmk1_from_S._pombe-other-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"Pmk1Sp","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0000003","FYPO:0002682","FYPO:0001985","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"}],"references_by_uniquename":{},"uniquename":"SJAG_04551:allele-3"}


id: SJAG_04551:allele-4
data:
  {"allele_type":"partial_amino_acid_deletion","alleles_by_uniquename":{},"description":"Pmk1 from S. pombe with deleted residues 82-105","gene":{"name":"pmk1","product":"MAP kinase Pmk1","uniquename":"SJAG_04551"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Pmk1Sp(delta82-105)(Pmk1 from S. pombe with deleted residues 82-105 Δaa)","display_uniquename":"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-4","expression":"Not assayed or wild type"}]}]}],"name":"Pmk1Sp(delta82-105)","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002274","FYPO:0002494","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein phosphorylation","termid":"FYPO:0002678"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0002274","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0002494"],"is_obsolete":false,"name":"abolished protein phosphorylation during vegetative growth","termid":"FYPO:0002033"},{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0000003","FYPO:0002682","FYPO:0001985","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"}],"references_by_uniquename":{},"uniquename":"SJAG_04551:allele-4"}


id: SJAG_04574:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"clr4","product":"histone lysine H3-K9 methyltransferase (Suv39) Clr4","uniquename":"SJAG_04574"},"genes_by_uniquename":{},"genotypes":[{"display_name":"clr4delta","display_uniquename":"clr4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04574:allele-1","expression":"Null"}]}]},{"display_name":"clr4delta leo1delta","display_uniquename":"clr4delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04574:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]}],"name":"clr4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002059","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_04574:allele-1"}


id: SJAG_04671:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mrc1","product":"claspin, Mrc1","uniquename":"SJAG_04671"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mrc1delta","display_uniquename":"mrc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04671:allele-1","expression":"Null"}]}]}],"name":"mrc1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0001985","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"}],"references_by_uniquename":{},"uniquename":"SJAG_04671:allele-1"}


id: SJAG_04697:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"gms1","product":"Golgi UDP-galactose transmembrane transporter Gms1","uniquename":"SJAG_04697"},"genes_by_uniquename":{},"genotypes":[{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]}],"name":"gms1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"cell lysis during hyphal growth phase","termid":"FYPO:0008029"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000003","FYPO:0002058","FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002060","FYPO:0002057"],"is_obsolete":false,"name":"decreased cell population growth at high temperature","secondary_identifiers":["FYPO:0000247"],"termid":"FYPO:0000082"},{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0002494","FYPO:0005447","FYPO:0002274","FYPO:0000002","FYPO:0001320","FYPO:0002946","FYPO:0003290"],"is_obsolete":false,"name":"galactose absent from cell wall glycoprotein glycan","termid":"FYPO:0003727"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0002683","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to hygromycin B","termid":"FYPO:0000106"}],"references_by_uniquename":{},"uniquename":"SJAG_04697:allele-1"}


id: SJAG_04703:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"for3","product":"formin For3","uniquename":"SJAG_04703"},"genes_by_uniquename":{},"genotypes":[{"display_name":"for3delta","display_uniquename":"for3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04703:allele-1","expression":"Null"}]}]}],"name":"for3delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0004803","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"actin cables absent from cell","termid":"FYPO:0003315"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0002058","FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002057","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0000002"],"is_obsolete":false,"name":"spherical cell","termid":"FYPO:0001956"}],"references_by_uniquename":{},"uniquename":"SJAG_04703:allele-1"}


id: SJAG_04777:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"win1","product":"MAP kinase kinase kinase Win1","uniquename":"SJAG_04777"},"genes_by_uniquename":{},"genotypes":[{"display_name":"win1delta","display_uniquename":"win1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04777:allele-1","expression":"Null"}]}]}],"name":"win1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_04777:allele-1"}


id: SJAG_04843:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"fum1","product":"fumarate hydratase Fum1","uniquename":"SJAG_04843"},"genes_by_uniquename":{},"genotypes":[{"display_name":"fum1delta","display_uniquename":"fum1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04843:allele-1","expression":"Null"}]}]}],"name":"fum1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_04843:allele-1"}


id: SJAG_04883:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ptp4","product":"phosphatidate cytidylyltransferase Ptp4/Dgk1","uniquename":"SJAG_04883"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ptp4delta","display_uniquename":"ptp4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04883:allele-1","expression":"Null"}]}]}],"name":"ptp4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal mitosis","termid":"FYPO:0001007"}],"references_by_uniquename":{},"uniquename":"SJAG_04883:allele-1"}


id: SJAG_04912:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps25","product":"ESCRT II complex subunit Vps25","uniquename":"SJAG_04912"},"genes_by_uniquename":{},"genotypes":[{"display_name":"vps25delta","display_uniquename":"vps25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04912:allele-1","expression":"Null"}]}]}],"name":"vps25delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein complex localization","termid":"FYPO:0001440"}],"references_by_uniquename":{},"uniquename":"SJAG_04912:allele-1"}


id: SJAG_05207:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"cmp7","product":"ESCRT III complex subunit, nuclear envelope specific subunit Cmp7","uniquename":"SJAG_05207"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cmp7delta","display_uniquename":"cmp7delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]}]},{"display_name":"cmp7delta vps4-ts(I307T L327S aa)","display_uniquename":"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"cmp7delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0002057","FYPO:0002058","FYPO:0002060","FYPO:0000139","FYPO:0005447","FYPO:0000003"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0002683","FYPO:0005447","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to leptomycin B","termid":"FYPO:0000714"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002060","FYPO:0002058","FYPO:0000139","FYPO:0002057","FYPO:0005447","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_05207:allele-1"}


id: SJAG_05242:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wcs2","product":"blue light signalling transcription factor, zf-GATA type Wcs2","uniquename":"SJAG_05242"},"genes_by_uniquename":{},"genotypes":[{"display_name":"wcs2delta","display_uniquename":"wcs2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05242:allele-1","expression":"Null"}]}]}],"name":"wcs2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000298","FYPO:0000002"],"is_obsolete":false,"name":"abnormal blue light response","termid":"FYPO:0008031"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003"],"is_obsolete":false,"name":"decreased sexual agglutination in response to blue light","termid":"FYPO:0008046"}],"references_by_uniquename":{},"uniquename":"SJAG_05242:allele-1"}


# refs

id: PMID:36058798
data:
  {"abstract":"Schizosaccharomyces japonicus is a dimorphic yeast, transiting between unicellular and hyphal growth. The glycoproteins of fission yeast contain, in addition to mannose (Man), a large number of galactose (Gal) residues. Previously, we reported that the cell-surface O-glycans of S. japonicus comprise mainly tri-saccharides (Gal-Man-Man) as a main component, in contrast to the tetra-saccharides observed in other Schizosaccharomyces species. Here we have investigated the function of cell-surface Gal residues in S. japonicus. Because disruption of gms1 + , encoding the UDP-Gal transporter required for galactomannan synthesis, abolishes cell-surface galactosylation in Schizosaccharomyces pombe, we constructed a deletion mutant of the homologous gene in S. japonicus gms1Δ [gms1 (S.j)] and determined the N- and O-linked oligosaccharide structures present on the cell surface. Disruption of gms1 (S.j) resulted in a complete lack of Gal on the cell surface, indicating that Gms1 plays an essential role in supplying UDP-Gal from the cytoplasm to the Golgi lumen. Analytical microscopy of gms1Δ demonstrated that the lack of cell-surface Gal did not affect cell growth or morphology during vegetative growth. However, hyphal development was blocked in gms1Δ, even in the presence of the topoisomerase I inhibitor camptothecin, which is known to induce hyphal differentiation in wild-type S. japonicus. Collectively, these findings show that Gal-containing oligosaccharides are required for cell wall integrity during filamentous growth in S. japonicus.","alleles_by_uniquename":{"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"}},"annotation_curators":[{"annotation_count":6,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2022-12-01","authors":"Fukunaga T, Ohashi T, Tanaka Y, Yoshimatsu T, Higuchi Y, Maekawa H, Takegawa K","authors_abbrev":"Fukunaga T et al.","canto_added_date":"2022-11-25 12:12:27","canto_annotation_status":"APPROVED","canto_approved_date":"2022-12-01 10:35:53","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2022-12-01 10:35:53","canto_session_key":"465355706dc223a3","canto_session_submitted_date":"2022-11-25 12:49:07","canto_triage_status":"Curatable","citation":"J Biosci Bioeng 2022 Nov;134(5):384-392","cv_annotations":{"single_locus_phenotype":[{"annotations":[115604],"is_not":false,"summary":null,"term":"FYPO:0008029"},{"annotations":[115600],"is_not":false,"summary":null,"term":"FYPO:0000082"},{"annotations":[115603],"is_not":false,"summary":null,"term":"FYPO:0007776"},{"annotations":[115602],"is_not":false,"summary":null,"term":"FYPO:0007780"},{"annotations":[115599],"is_not":false,"summary":null,"term":"FYPO:0003727"},{"annotations":[115601],"is_not":false,"summary":null,"term":"FYPO:0000106"}]},"doi":"10.1016/j.jbiosc.2022.07.014","gene_count":1,"genes_by_uniquename":{"SJAG_04697":null},"genotypes_by_uniquename":{"gms1delta":{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]}},"ltp_gene_count":1,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2022","pubmed_entrez_date":"2022-09-04","pubmed_publication_date":"Nov 2022","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000314":null,"FYPO:0000082":null,"FYPO:0000106":null,"FYPO:0003727":null,"FYPO:0007776":null,"FYPO:0007780":null,"FYPO:0008029":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null},"title":"Galactosylation of cell-surface glycoprotein required for hyphal growth and cell wall integrity in Schizosaccharomyces japonicus.","uniquename":"PMID:36058798"}


id: PMID:2197287
data:
  {"abstract":"Changes in the distribution of microtubules and F-actin through the cell division cycle of the fission yeast Schizosaccharomyces japonicus var. versatilis were investigated by fluorescence microscopy. The fluorescence images obtained with S. japonicus were markedly superior to those previously reported for S. pombe and revealed new details of cytoskeletal organization in this important genus. As in S. pombe, F-actin in S. japonicus was present as a concentration of 'dots' at the growing poles of interphase cells and as a filamentous equatorial ring directing the deposition of the cytokinetic septum. The transition between these two states occurred at late anaphase, in contrast to the situation in S. pombe where the appearance of the equatorial actin ring is tightly coupled to the early events of mitosis. During the course of cytokinesis in S. japonicus the actin ring constricted and broadened, suggesting that it is contractile. Microtubule organization in S. japonicus also revealed interesting differences from S. pombe. Whereas in S. pombe cytoplasmic microtubules are reinitiated from a pair of microtubule organizing centres (MTOCs) at the cell equator, in S. japonicus they arise by extensive microtubule growth from the spindle poles. Western blots of cell extracts enriched for tubulin by DEAE-Sephadex chromatography showed that, like S. pombe, S. japonicus contains two alpha-tubulins and a single beta-tubulin. Whilst the alpha 1- and beta-tubulins from the two species comigrated on one-dimensional polyacrylamide gels, the alpha 2 species were electrophoretically distinct. Although fundamental differences clearly exist between the two species, S. japonicus could prove to be a useful tool in basic studies of fission yeast cell biology.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Alfa CE, Hyams JS","authors_abbrev":"Alfa CE et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"J Cell Sci 1990 May;96 ( Pt 1):71-7","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"1990","pubmed_entrez_date":"1990-05-01","pubmed_publication_date":"May 1990","terms_by_termid":{},"title":"Distribution of tubulin and actin through the cell division cycle of the fission yeast Schizosaccharomyces japonicus var. versatilis: a comparison with Schizosaccharomyces pombe.","uniquename":"PMID:2197287"}


id: GO_REF:0000047
data:
  {"abstract":"This describes a method for supplying a NOT-qualified, IKR-evidenced GO annotation to a gene product, when general sequence homology considerations would suggest a function or location, or a role in a biological process, but where a curator has determined that the absence of key sequence residues, known to be required for an expected activity or location, indicating the gene product is unlikely to be able to carry out the implied activity, involvement in a process or cellular component location. This reference should only be used used when an IKR-evidenced annotation is made based on curator judgement from manually reviewing the sequence of the gene product and where no publication can be found to support the curators conclusion. It is preferable to cite a peer-reviewed publication (such as a PubMed identifier) for IKR-evidenced annotations whenever possible. Curators will have carefully reviewed the sequence of the annotated protein, and established that the key residues known to be required for an expected activity or location are not present. Inclusion of an identifier in the 'with/from' field, that highlights to the user the lacking residues(e.g. an alignment, domain or rule identifier) is absolutely required when annotating to IKR with this GO_REF. Documentation on the GOC website provides more details on the <a href = \"http://www.geneontology.org/GO.evidence.shtml#ikr\">correct use of the IKR evidence code</a>.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO curators","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Gene Ontology annotation based on absence of key sequence residues.","uniquename":"GO_REF:0000047"}


id: PMID:26343758
data:
  {"abstract":"CENP-A is a centromere-specific histone H3 variant that is required for kinetochore assembly and accurate chromosome segregation. For it to function properly, CENP-A must be specifically localized to centromeres. In fission yeast, Scm3sp and the Mis18 complex, composed of Mis16, Eic1, and Mis18, function as a CENP-A(Cnp1)-specific chaperone and a recruiting factor, respectively, and together ensure accurate delivery of CENP-A(Cnp1) to centromeres. Although how Scm3sp specifically recognizes CENP-A(Cnp1) has been revealed recently, the recruiting mechanism of CENP-A(Cnp1) via the Mis18 complex remains unknown. In this study, we have determined crystal structures of Schizosaccharomyces japonicus Mis16 alone and in complex with the helix 1 of histone H4 (H4α1). Crystal structures followed by mutant analysis and affinity pull-downs have revealed that Mis16 recognizes both H4α1 and Scm3sp independently within the CENP-A(Cnp1)/H4:Scm3sp complex. This observation suggests that Mis16 gains CENP-A(Cnp1) specificity by recognizing both Scm3sp and histone H4. Our studies provide insights into the molecular mechanisms underlying specific recruitment of CENP-A(Cnp1)/H4:Scm3sp into centromeres. ","alleles_by_uniquename":{},"annotation_curators":[{"annotation_count":4,"community_curator":false,"file_name":null,"file_type":null,"name":"Val Wood","orcid":"0000-0001-6330-7526"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-05-13","authors":"An S, Kim H, Cho US","authors_abbrev":"An S et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2021-05-13 14:11:41","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Val Wood","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-05-13 14:11:41","canto_session_key":"fb189c5ef542852c","canto_session_submitted_date":"2021-05-12 16:00:22","canto_triage_status":"Curatable","citation":"J Mol Biol 2015 Oct 09;427(20):3230-3240","cv_annotations":{"molecular_function":[{"annotations":[115562,115563,115564,115565],"is_not":false,"summary":null,"term":"GO:0042393"}]},"doi":"10.1016/j.jmb.2015.08.022","gene_count":4,"genes_by_uniquename":{"SJAG_00303":null,"SJAG_02513":null,"SJAG_03542":null,"SJAG_03867":null},"genotypes_by_uniquename":{},"ltp_gene_count":3,"ortholog_annotations":[],"paralog_annotations":[],"pdb_entries":[{"entry_authors":"An S,Kim H,Cho U-S","entry_authors_abbrev":"An S et al.","experimental_method":"X-ray","gene_chains":[{"chain":"B","gene_uniquename":"SJAG_03542","position":"1-103"},{"chain":"A","gene_uniquename":"SJAG_03867","position":"1-427"}],"pdb_id":"4xyi","reference_uniquename":"PMID:26343758","resolution":"3.0","title":"Mis16 with H4 peptide"},{"entry_authors":"An S,Kim H,Cho U-S","entry_authors_abbrev":"An S et al.","experimental_method":"X-ray","gene_chains":[{"chain":"A","gene_uniquename":"SJAG_03867","position":"1-427"}],"pdb_id":"4xyh","reference_uniquename":"PMID:26343758","resolution":"2.3","title":"Wild-type full length Mis16 in Schizosaccharomyces japonicus"}],"physical_interactions":[],"publication_year":"2015","pubmed_entrez_date":"2015-09-08","pubmed_publication_date":"09 Oct 2015","terms_by_termid":{"GO:0042393":null},"title":"Mis16 Independently Recognizes Histone H4 and the CENP-ACnp1-Specific Chaperone Scm3sp.","uniquename":"PMID:26343758"}


id: GO_REF:0000051
data:
  {"abstract":"Keywords derived from manually curated primary annotation, e.g. gene product descriptions, are mapped to GO terms. Annotations made by this method have the evidence code Non-traceable Author Statement (NAS), and are filtered from the PomBase annotation files wherever another annotation exists that is equally or more specific, and supported by experimental or manually evaluated comparative evidence (such as ISS and its subtypes). Formerly GOC:pombekw2GO.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"PomBase curators","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"S. pombe keyword mapping","uniquename":"GO_REF:0000051"}


id: GO_REF:0000086
data:
  {"abstract":"We have created a standard template for classes describing the differentiation process for a cell type as a biological process. The underlying equivalence axiom template is \"GO:0030154 and 'results in acquisition of features of' some C\", where C is a native cell (CL:0000003).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of cell differentiation as biological process in the Gene Ontology","uniquename":"GO_REF:0000086"}


id: GO_REF:0000076
data:
  {"abstract":"We have created a standard template for classes describing the transport or vesicle-mediated transport from cellular component to cellular component as a biological process. The underlying equivalence axiom templates are \"GO:0006810 and 'has_target_start_location' some F and 'has_target_end_location' some T\" (transport) and \"GO:0016192 and 'has_target_start_location' some F and 'has_target_end_location' some T\" (vesicle-mediated transport), where F and T are a cellular components.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of transport or vesicle-mediated transport from cell component to cell component as biological process in the Gene Ontology","uniquename":"GO_REF:0000076"}


id: PMID:9720056
data:
  {"abstract":"The cells of Schizosaccharomyces japonicus var. versatilis responded to the presence of cytochalasin D (CD), an inhibitor of actin polymerization, by the disappearance of contractile actin rings (ARs) that had already formed and by inhibition of new ring formation. Actin cables disappeared. Actin patches remained preserved and became co-localized with regions of actual cell wall formation (at cell poles and at the site of septum development). Removal of the AR arrested formation of the primary septum and led to the production of aberrant septum protrusions in that region. Nuclear division was accomplished in the presence of CD but new ARs were not produced. The wall (septum) material was deposited in the form of a wide band at the inner surface of the lateral cell wall in the cell centre. This layer showed a thin fibrillar structure. The removal of CD resulted in rapid formation of new ARs in the equatorial region of the cells. This implies that the signal for AR localization was not abolished either by CD effects or by removal of an AR already formed. Some of the newly developed ARs showed atypical localization and orientation. In addition, redundant, subcortically situated actin bundles were produced. The removal of CD was quickly followed by the development of primary septa co-localized with ARs. Wall protrusions occurred co-localized with the redundant actin bundles. If these were completed in a circle, redundant septa developed. The AR is a mechanism which, in time and space, triggers cytokinesis by building a septum sequentially dependent on the AR. Aberrant septa were not capable of separating daughter cells. However, non-separated daughter cells subsequently gave rise to normal cells.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Gabriel M, Horký D, Svoboda A, Kopecká M","authors_abbrev":"Gabriel M et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"Microbiology (Reading) 1998 Aug;144 ( Pt 8):2331-2344","cv_annotations":{},"doi":"10.1099/00221287-144-8-2331","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"1998","pubmed_entrez_date":"1998-08-28","pubmed_publication_date":"Aug 1998","terms_by_termid":{},"title":"Cytochalasin D interferes with contractile actin ring and septum formation in Schizosaccharomyces japonicus var. versatilis.","uniquename":"PMID:9720056"}


id: PMID:22641476
data:
  {"abstract":"Measuring relative genetic distances is one of the best ways to locate genetic loci. Here we report the construction of a strains set for genetic mapping in Schizosaccharomyces japonicus, which belongs to the genus Schizosaccharomyces together with the well-studied fission yeast Sz. pombe. We constructed 29 strains that bear a positive-negative selection marker at different loci. The marker was inserted every 500 kb in the genome of Sz. japonicus. Each marker thus becomes a 'scale mark' of a chromosome that behaves like a yardstick. By determining the genetic distances from the inserted markers, the relative location of a genomic mutation can be determined. We also constructed a fosmid library that covers an entire genome of Sz. japonicus. These tools together would facilitate identification and cloning of the gene.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Furuya K, Aoki K, Niki H","authors_abbrev":"Furuya K et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Method or reagent","citation":"Yeast 2012 Jun;29(6):241-9","cv_annotations":{},"doi":"10.1002/yea.2907","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2012","pubmed_entrez_date":"2012-05-30","pubmed_publication_date":"Jun 2012","terms_by_termid":{},"title":"Construction of an insertion marker collection of Sz. japonicus (IMACS) for genetic mapping and a fosmid library covering its genome.","uniquename":"PMID:22641476"}


id: GO_REF:0000085
data:
  {"abstract":"We have created a standard template for classes describing the apoptotic process for a cell type as a biological process. The underlying equivalence axiom template is \"'apoptotic process' and 'occurs in' some C\", where C is a native cell (CL:0000003).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of cell apoptotic process as biological process in the Gene Ontology","uniquename":"GO_REF:0000085"}


id: PMID:20618870
data:
  {"abstract":"The genus Schizosaccharomyces is presently comprised of three species, namely Schizosaccharomyces pombe, Schizosaccharomyces octosporus and Schizosaccharomyces japonicus. Here, we describe a hitherto unknown species, Schizosaccharomyces cryophilus, named for its preference for growth at lower temperatures than the other fission yeast species. Although morphologically similar to S. octosporus, analysis of several rapidly evolving sequences, including the D1/D2 divergent domain of the large subunit (LSU) rRNA gene, the RNA subunit of RNAse P and the internal transcribed spacer elements, revealed significant divergence from any previously characterized Schizosaccharomyces strain. Based on phylogenetic analysis of the D1/D2 domain of the LSU rRNA gene, S. octosporus is the closest known relative of S. cryophilus, with the sequences of the two species differing by 25 nucleotide substitutions (>4%). Sequencing of the S. cryophilus genome and phylogenetic analysis of all 1 : 1 protein orthologs confirmed this observation, and together with morphological and physiological characterization, supports the assignment of S. cryophilus as a new species within the genus Schizosaccharomyces. The type strain of the new species is NRRL Y-48691(T) (=NBRC 106824(T)=CBS 11777(T)).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Helston RM, Box JA, Tang W, Baumann P","authors_abbrev":"Helston RM et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Phylogeny and evolutionary studies","citation":"FEMS Yeast Res 2010 Sep;10(6):779-86","cv_annotations":{},"doi":"10.1111/j.1567-1364.2010.00657.x","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2010","pubmed_entrez_date":"2010-07-13","pubmed_publication_date":"Sep 2010","terms_by_termid":{},"title":"Schizosaccharomyces cryophilus sp. nov., a new species of fission yeast.","uniquename":"PMID:20618870"}


id: PMID:28228545
data:
  {"abstract":"Inactivation of retrotransposons is accompanied by the emergence of centromere-binding protein-B (CENPB) in  Schizosaccharomyces , as well as in metazoans. The RNA interference (RNAi)-induced transcriptional silencing (RITS) complex, comprising chromodomain protein-1 (Chp1), Tas3 (protein with unknown function), and Argonaute (Ago1), plays an important role in RNAi-mediated heterochromatinization. We find that whereas the Ago1 subunit of the RITS complex is highly conserved, Tas3 is lost and Chp1 is truncated in  Schizosaccharomyces cryophilus  and  Schizosaccharomyces octosporus  We show that truncated Chp1 loses the property of heterochromatin localization and silencing when transformed in  Schizosaccharomyces pombe  Furthermore, multiple copies of CENPB, related to  Tc1/mariner and Tc5  transposons, occur in all  Schizosaccharomyces  species, as well as in humans, but with loss of transposase function (except  Schizosaccharomyces japonicus ). We propose that acquisition of  Tc1/mariner and Tc5  elements by horizontal transfer in  S. pombe  (and humans) is accompanied by alteration of their function from a transposase/endonuclease to a heterochromatin protein, designed to suppress transposon expression and recombination. The resulting redundancy of RITS may have eased the selection pressure, resulting in progressive loss or truncation of  tas3  and  chp1  genes in  S. octosporus  and  S. cryophilus  and triggered similar evolutionary dynamics in the metazoan orthologues.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Upadhyay U, Srivastava S, Khatri I, Nanda JS, Subramanian S, Arora A, Singh J","authors_abbrev":"Upadhyay U et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Phylogeny and evolutionary studies","citation":"Mol Biol Cell 2017 Apr 15;28(8):1132-1146","cv_annotations":{},"doi":"10.1091/mbc.E16-07-0485","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2017","pubmed_entrez_date":"2017-02-24","pubmed_publication_date":"15 Apr 2017","terms_by_termid":{},"title":"Ablation of RNA interference and retrotransposons accompany acquisition and evolution of transposases to heterochromatin protein CENPB.","uniquename":"PMID:28228545"}


id: GO_REF:0000096
data:
  {"abstract":"Mouse Genome Database (MGD), The HUGO Gene Nomenclature Committee (HGNC), and Rat Genome Database (RGD) have extensive procedures in place, overseen by expert curation, to establish orthology relationships between their genes. The Experimentally based annotations annotated by each group (IDA, IMP IPI, IGI, and EXP) are used to provide annotations  to the respective mouse and rat orthologs, and given the ISO evidence code and an entry in the inferred_from field to indicate the orthologous entity. ","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Mouse Genome Informatics scientific curators","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Automated transfer of experimentally-verified manual GO annotation data to close orthologs.","uniquename":"GO_REF:0000096"}


id: PMID:8546451
data:
  {"abstract":"The phylogenesis of fungi is controversial due to their simple morphology and poor fossilization. Traditional classification supported by morphological studies and physiological traits placed the fission yeasts in one group with ascomycetous yeasts. The rRNA sequence comparisons, however, revealed an enormous evolutionary gap between Saccharomyces and Schizosaccharomyces. As shown in this review, the protein sequences also show a large gap which is almost as large as that separating Schizosaccharomyces from higher animals. Since the two yeasts share features (both cytological and molecular) in common which are also characteristic of ascomycetous fungi, their separation must have taken place later than the sequence differences may suggest. Possible reasons for the paradox are discussed. The sequence data also suggest a slower evolutionary rate in the Schizosaccharomyces lineage than in the Saccharomyces branch. In the fission yeast lineage two ramifications can be supposed. First S. japonicus (Hasegawaea japonica) branched off, then S. octosporus (Octosporomyces octosporus) separated from S. pombe.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Sipiczki M","authors_abbrev":"Sipiczki M","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Phylogeny and evolutionary studies","citation":"Antonie Van Leeuwenhoek 1995 Aug;68(2):119-49","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"1995","pubmed_entrez_date":"1995-08-01","pubmed_publication_date":"Aug 1995","terms_by_termid":{},"title":"Phylogenesis of fission yeasts. Contradictions surrounding the origin of a century old genus.","uniquename":"PMID:8546451"}


id: GO_REF:0000041
data:
  {"abstract":"Transitive assignment of GO terms based on the UniPathway pathway vocabulary. UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways. Descriptions of the pathway(s) that a particular protein is involved in are included in UniProtKB records.<br>UniPathway data are cross-linked to existing pathway resources such as KEGG and MetaCyc. Further information on the UniPathway resource is available at http://www.unipathway.org/obiwarehouse/unipathway.<br>When a UniPathway pathway describes a concept that is within the scope of the Gene Ontology, it is investigated to determine whether it is appropriate to map the term to an equivalent term in GO. The mapping between UniPathway terms and GO terms is carried out manually. Definitions and hierarchies of the terms in the two resources are compared and the mapping generated will reflect the most correct correspondence. The translation table between GO terms and UniPathway pathways is maintained by the UniPathway team and is available at http://www.grenoble.prabi.fr/dev/obiwarehouse/download/unipathway/public/unipathway2go.tsv.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"UniProt-GOA","canto_curator_role":"JaponicusDB","cv_annotations":{"biological_process":[{"annotations":[65191],"is_not":false,"summary":null,"term":"GO:0006021"},{"annotations":[66680],"is_not":false,"summary":null,"term":"GO:0006782"},{"annotations":[57708],"is_not":false,"summary":null,"term":"GO:0006048"}]},"gene_count":3,"genes_by_uniquename":{"SJAG_00097":null,"SJAG_00519":null,"SJAG_03739":null},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{"GO:0006021":null,"GO:0006048":null,"GO:0006782":null},"title":"Gene Ontology annotation based on UniPathway vocabulary mapping. ","uniquename":"GO_REF:0000041"}


id: PMID:32109380
data:
  {"abstract":"Eukaryotic genomes are organized within the nucleus through interactions with inner nuclear membrane (INM) proteins. How chromatin tethering to the INM is controlled in interphase and how this process contributes to subsequent mitotic nuclear envelope (NE) remodeling remains unclear. We have probed these fundamental questions using the fission yeast Schizosaccharomyces japonicus, which breaks and reforms the NE during mitosis. We show that attachments between heterochromatin and the transmembrane Lem2-Nur1 complex at the INM are remodeled in interphase by the ESCRT-III/Vps4 machinery. Failure of ESCRT-III/Vps4 to release Lem2-Nur1 from heterochromatin leads to persistent association of chromosomes with the INM throughout mitosis. At mitotic exit, such trapping of Lem2-Nur1 on heterochromatin prevents it from re-establishing nucleocytoplasmic compartmentalization. Our work identifies the Lem2-Nur1 complex as a substrate for the nuclear ESCRT machinery and explains how the dynamic tethering of chromosomes to the INM is linked to the establishment of nuclear compartmentalization.","alleles_by_uniquename":{"SJAG_01050:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01050","name":"nur1delta","uniquename":"SJAG_01050:allele-1"},"SJAG_01242:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01242","name":"vps32delta","uniquename":"SJAG_01242:allele-1"},"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_03250:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03250","name":"sst4delta","uniquename":"SJAG_03250:allele-1"},"SJAG_03783:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03783","name":"vps24delta","uniquename":"SJAG_03783:allele-1"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"},"SJAG_03892:allele-2":{"allele_type":"amino_acid_mutation","description":"E233Q","gene_uniquename":"SJAG_03892","name":"Vps4-EQ","uniquename":"SJAG_03892:allele-2"},"SJAG_03892:allele-3":{"allele_type":"amino_acid_mutation","description":"I307T L327S","gene_uniquename":"SJAG_03892","name":"vps4-ts","uniquename":"SJAG_03892:allele-3"},"SJAG_04349:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04349","name":"vps28delta","uniquename":"SJAG_04349:allele-1"},"SJAG_04489:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04489","name":"did4delta","uniquename":"SJAG_04489:allele-1"},"SJAG_04912:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04912","name":"vps25delta","uniquename":"SJAG_04912:allele-1"},"SJAG_05207:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05207","name":"cmp7delta","uniquename":"SJAG_05207:allele-1"}},"annotation_curators":[{"annotation_count":53,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-06-17","authors":"Pieper GH, Sprenger S, Teis D, Oliferenko S","authors_abbrev":"Pieper GH et al.","canto_added_date":"2021-05-10 02:37:07","canto_annotation_status":"APPROVED","canto_approved_date":"2021-06-17 17:46:25","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-06-17 17:46:25","canto_session_key":"89c611dbc0229af1","canto_session_submitted_date":"2021-06-17 17:46:16","canto_triage_status":"Curatable","citation":"Dev Cell 2020 04 06;53(1):27-41.e6","cv_annotations":{"cellular_component":[{"annotations":[115395],"is_not":false,"summary":null,"term":"GO:0000781"},{"annotations":[115393],"is_not":false,"summary":null,"term":"GO:0005783"},{"annotations":[115415],"is_not":false,"summary":null,"term":"GO:0000792"},{"annotations":[115420],"is_not":false,"summary":null,"term":"GO:1990343"},{"annotations":[115377],"is_not":false,"summary":null,"term":"GO:0000776"},{"annotations":[115397],"is_not":false,"summary":null,"term":"GO:0005771"},{"annotations":[115399],"is_not":false,"summary":null,"term":"GO:0032585"},{"annotations":[115398,115400],"is_not":false,"summary":null,"term":"GO:0031965"},{"annotations":[115421],"is_not":false,"summary":null,"term":"GO:0005643"},{"annotations":[115378,115383,115401],"is_not":false,"summary":null,"term":"GO:0005816"}],"molecular_function":[{"annotations":[115376],"is_not":false,"summary":null,"term":"GO:0043515"}],"multi_locus_phenotype":[{"annotations":[115406],"is_not":false,"summary":null,"term":"FYPO:0007771"},{"annotations":[115417],"is_not":false,"summary":null,"term":"FYPO:0001132"}],"single_locus_phenotype":[{"annotations":[115402,115403,115404],"is_not":false,"summary":null,"term":"FYPO:0001440"},{"annotations":[115413,115414],"is_not":false,"summary":null,"term":"FYPO:0001370"},{"annotations":[115416],"is_not":false,"summary":null,"term":"FYPO:0004718"},{"annotations":[115381,115382,115388,115389,115391,115392,115405,115407,115408,115409,115410,115411,115412],"is_not":false,"summary":null,"term":"FYPO:0007771"},{"annotations":[115394],"is_not":false,"summary":null,"term":"FYPO:0004318"},{"annotations":[115385],"is_not":false,"summary":null,"term":"FYPO:0007073"},{"annotations":[115379,115380,115386,115387],"is_not":false,"summary":null,"term":"FYPO:0007772"},{"annotations":[115390],"is_not":false,"summary":null,"term":"FYPO:0007770"},{"annotations":[115396],"is_not":false,"summary":null,"term":"FYPO:0003780"},{"annotations":[115384],"is_not":false,"summary":null,"term":"FYPO:0003657"},{"annotations":[115418,115419],"is_not":false,"summary":null,"term":"FYPO:0001234"}]},"doi":"10.1016/j.devcel.2020.01.028","gene_count":15,"genes_by_uniquename":{"SJAG_00684":null,"SJAG_01050":null,"SJAG_01242":null,"SJAG_01330":null,"SJAG_01601":null,"SJAG_01745":null,"SJAG_01777":null,"SJAG_03250":null,"SJAG_03299":null,"SJAG_03783":null,"SJAG_03892":null,"SJAG_04349":null,"SJAG_04489":null,"SJAG_04912":null,"SJAG_05207":null},"genotypes_by_uniquename":{"Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"Vps4-EQ(E233Q aa)","display_uniquename":"Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-2","expression":"Not assayed or wild type"}]}]},"cmp7delta":{"display_name":"cmp7delta","display_uniquename":"cmp7delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]}]},"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cmp7delta vps4-ts(I307T L327S aa)","display_uniquename":"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]},"did4delta":{"display_name":"did4delta","display_uniquename":"did4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04489:allele-1","expression":"Null"}]}]},"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]},"mad2delta":{"display_name":"mad2delta","display_uniquename":"mad2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01330:allele-1","expression":"Null"}]}]},"nur1delta":{"display_name":"nur1delta","display_uniquename":"nur1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]}]},"nur1delta__vps4delta":{"display_name":"nur1delta vps4delta","display_uniquename":"nur1delta__vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]},"sst4delta":{"display_name":"sst4delta","display_uniquename":"sst4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03250:allele-1","expression":"Null"}]}]},"vps24delta":{"display_name":"vps24delta","display_uniquename":"vps24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03783:allele-1","expression":"Null"}]}]},"vps25delta":{"display_name":"vps25delta","display_uniquename":"vps25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04912:allele-1","expression":"Null"}]}]},"vps28delta":{"display_name":"vps28delta","display_uniquename":"vps28delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04349:allele-1","expression":"Null"}]}]},"vps32delta":{"display_name":"vps32delta","display_uniquename":"vps32delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01242:allele-1","expression":"Null"}]}]},"vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"vps4-ts(I307T L327S aa)","display_uniquename":"vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]},"vps4delta":{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}},"ltp_gene_count":15,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[{"evidence":"Reconstituted Complex","gene_uniquename":"SJAG_01242","interactor_uniquename":"SJAG_03892","reference_uniquename":"PMID:32109380","throughput":"low"},{"evidence":"Reconstituted Complex","gene_uniquename":"SJAG_04489","interactor_uniquename":"SJAG_03892","reference_uniquename":"PMID:32109380","throughput":"low"},{"evidence":"Reconstituted Complex","gene_uniquename":"SJAG_05207","interactor_uniquename":"SJAG_01242","reference_uniquename":"PMID:32109380","throughput":"low"},{"evidence":"Reconstituted Complex","gene_uniquename":"SJAG_05207","interactor_uniquename":"SJAG_01745","reference_uniquename":"PMID:32109380","throughput":"low"},{"evidence":"Reconstituted Complex","gene_uniquename":"SJAG_05207","interactor_uniquename":"SJAG_03892","reference_uniquename":"PMID:32109380","throughput":"low"}],"publication_year":"2020","pubmed_entrez_date":"2020-02-29","pubmed_publication_date":"06 04 2020","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0001132":null,"FYPO:0001234":null,"FYPO:0001370":null,"FYPO:0001440":null,"FYPO:0003657":null,"FYPO:0003780":null,"FYPO:0004318":null,"FYPO:0004718":null,"FYPO:0007073":null,"FYPO:0007770":null,"FYPO:0007771":null,"FYPO:0007772":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"GO:0000093":null,"GO:0000776":null,"GO:0000781":null,"GO:0000792":null,"GO:0000815":null,"GO:0005643":null,"GO:0005771":null,"GO:0005783":null,"GO:0005816":null,"GO:0031965":null,"GO:0032585":null,"GO:0043515":null,"GO:1990343":null},"title":"ESCRT-III/Vps4 Controls Heterochromatin-Nuclear Envelope Attachments.","uniquename":"PMID:32109380"}


id: GO_REF:0000116
data:
  {"abstract":"Rhea (https://www.rhea-db.org/, PMID:30272209) is an expert-curated knowledgebase of chemical and transport reactions of biological interest - and the standard for enzyme and transporter annotation in UniProtKB (PMID:31688925). Rhea uses the chemical dictionary ChEBI (Chemical Entities of Biological Interest) to describe reaction participants and their chemical transformations in a computationally tractable manner. GO terms corresponding to Rhea reactions are assigned a Rhea database cross-reference. The corresponding GO term is automatically applied to all UniProt entries annotated with a Rhea reaction. The mapping file is available at: http://current.geneontology.org/ontology/external2go/rhea2go.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO Central curators, GOA curators, Rhea curators","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Automatic Gene Ontology annotation based on Rhea mapping.","uniquename":"GO_REF:0000116"}


id: GO_REF:0000080
data:
  {"abstract":"We have created a standard template for classes describing the development of a plant structure as a biological process. The underlying equivalence axiom template is \"'anatomical structure development' and 'results in development of' some P\", where P is a plant anatomical entity (PO:0025131).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of plant development as biological process in the Gene Ontology","uniquename":"GO_REF:0000080"}


id: PMID:37684233
data:
  {"abstract":"Cellular metabolism relies on just a few redox cofactors. Selective compartmentalization may prevent competition between metabolic reactions requiring the same cofactor. Is such compartmentalization necessary for optimal cell function? Is there an optimal compartment size? Here we probe these fundamental questions using peroxisomal compartmentalization of the last steps of lysine and histidine biosynthesis in the fission yeast Schizosaccharomyces japonicus. We show that compartmentalization of these NAD +  dependent reactions together with a dedicated NADH/NAD +  recycling enzyme supports optimal growth when an increased demand for anabolic reactions taxes cellular redox balance. In turn, compartmentalization constrains the size of individual organelles, with larger peroxisomes accumulating all the required enzymes but unable to support both biosynthetic reactions at the same time. Our reengineering and physiological experiments indicate that compartmentalized biosynthetic reactions are sensitive to the size of the compartment, likely due to scaling-dependent changes within the system, such as enzyme packing density.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Gu Y, Alam S, Oliferenko S","authors_abbrev":"Gu Y et al.","canto_added_date":"2023-09-10 00:40:04","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"Nat Commun 2023 Sep 08;14(1):5544","cv_annotations":{},"doi":"10.1038/s41467-023-41347-x","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2023","pubmed_entrez_date":"2023-09-08","pubmed_publication_date":"08 Sep 2023","terms_by_termid":{},"title":"Peroxisomal compartmentalization of amino acid biosynthesis reactions imposes an upper limit on compartment size.","uniquename":"PMID:37684233"}


id: PMID:22531001
data:
  {"abstract":"DNA replication initiates at distinct origins in eukaryotic genomes, but the genomic features that define these sites are not well understood.\nWe have taken a combined experimental and bioinformatic approach to identify and characterize origins of replication in three distantly related fission yeasts: Schizosaccharomyces pombe, Schizosaccharomyces octosporus and Schizosaccharomyces japonicus. Using single-molecule deep sequencing to construct amplification-free high-resolution replication profiles, we located origins and identified sequence motifs that predict origin function. We then mapped nucleosome occupancy by deep sequencing of mononucleosomal DNA from the corresponding species, finding that origins tend to occupy nucleosome-depleted regions.\nThe sequences that specify origins are evolutionarily plastic, with low complexity nucleosome-excluding sequences functioning in S. pombe and S. octosporus, and binding sites for trans-acting nucleosome-excluding proteins functioning in S. japonicus. Furthermore, chromosome-scale variation in replication timing is conserved independently of origin location and via a mechanism distinct from known heterochromatic effects on origin function. These results are consistent with a model in which origins are simply the nucleosome-depleted regions of the genome with the highest affinity for the origin recognition complex. This approach provides a general strategy for understanding the mechanisms that define DNA replication origins in eukaryotes.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Xu J, Yanagisawa Y, Tsankov AM, Hart C, Aoki K, Kommajosyula N, Steinmann KE, Bochicchio J, Russ C, Regev A, Rando OJ, Nusbaum C, Niki H, Milos P, Weng Z, Rhind N","authors_abbrev":"Xu J et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Sequence feature or region","citation":"Genome Biol 2012 Apr 24;13(4):R27","cv_annotations":{},"doi":"10.1186/gb-2012-13-4-r27","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2012","pubmed_entrez_date":"2012-04-26","pubmed_publication_date":"24 Apr 2012","terms_by_termid":{},"title":"Genome-wide identification and characterization of replication origins by deep sequencing.","uniquename":"PMID:22531001"}


id: GO_REF:0000092
data:
  {"abstract":"We have created a standard template for classes describing the biosynthesis of a chemical entity from or via an other chemical entity as biological processes. The underlying equivalence axiom templates are \"GO:0009058 and 'has output' some T and 'has input' some F\" (biosynthesis from) and \"GO:0009058 and 'has output' some T and 'has intermediate' some I\" (biosynthesis via), where T,F, and I are chemical entities (CHEBI:24431). The approach to combine GO and ChEBI has been described in the following publication: PMID:23895341.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation for the biosynthesis from or via a chemical as biological process in the Gene Ontology","uniquename":"GO_REF:0000092"}


id: PMID:25942548
data:
  {"abstract":"New work shows the anillin-related protein Mid1 does not position the cytokinetic ring in the fission yeast Schizosaccharomyces japonicus, unlike its role in S. pombe. Further analysis suggests the conserved function of Mid1-like anillin proteins may be in scaffolding, not positioning, the cytokinetic ring. ","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Moseley JB","authors_abbrev":"Moseley JB","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Review or comment","citation":"Curr Biol 2015 May 04;25(9):R364-6","cv_annotations":{},"doi":"10.1016/j.cub.2015.03.017","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2015","pubmed_entrez_date":"2015-05-06","pubmed_publication_date":"04 May 2015","terms_by_termid":{},"title":"Cytokinesis: does Mid1 have an identity crisis?","uniquename":"PMID:25942548"}


id: PMID:32140970
data:
  {"abstract":"In eukaryotes, chromosome ends (telomeres) are tethered to the inner nuclear membrane. During the early stages of meiosis, telomeres move along the nuclear membrane and gather near the spindle-pole body, resulting in a bouquet-like arrangement of chromosomes. This chromosomal configuration appears to be widely conserved among eukaryotes, and is assumed to play an important role in the normal progression of meiosis, by mediating the proper pairing of homologous chromosomes. In fission yeast, the Bqt1-Bqt2 protein complex plays a key role in tethering the telomere to the inner nuclear membrane. However, the structural details of the complex required to clarify how telomeres are gathered near the spindle-pole body remain enigmatic. Previously, we devised a preparation procedure for the Schizosaccharomyces japonicus Bqt1-Bqt2 complex, in which a SUMO tag was fused to the N-terminus of the Bqt1 protein. This allowed us to purify the Bqt1-Bqt2 complex from the soluble fraction. In the present study, we found that a maltose-binding protein homolog, Athe_0614, served as a better fusion partner than the SUMO protein, resulting in the marked increase in the solubility of the Bqt1-Bqt2 complex. The Athe_0614 fusion partner may open up new avenues for X-ray crystallographic analyses of the structure of the Bqt1-Bqt2 complex.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Yuzurihara H, Aizawa Y, Saotome M, Ichikawa Y, Yokoyama H, Chikashige Y, Haraguchi T, Hiraoka Y, Kurumizaka H, Kagawa W","authors_abbrev":"Yuzurihara H et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Method or reagent","citation":"Protein J 2020 04;39(2):174-181","cv_annotations":{},"doi":"10.1007/s10930-020-09887-z","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2020","pubmed_entrez_date":"2020-03-07","pubmed_publication_date":"04 2020","terms_by_termid":{},"title":"Improved Methods for Preparing the Telomere Tethering Complex Bqt1-Bqt2 for Structural Studies.","uniquename":"PMID:32140970"}


id: GO_REF:0000012
data:
  {"abstract":"Pairwise alignments are generated by taking two sequences and aligning them so that the maximum number of amino acids in each protein match, or are similar to, each other. Tools such as BLAST work by comparing a protein-of-interest individually with every protein in a database of known protein sequences and retaining only those matches with a high probability of being significant. Basic BLAST generates local alignments between proteins for regions of high similarity. Other pairwise alignment tools attempt to generate global (full-length) protein alignments. A tool called Blast_Extend_repraze (BER, http://ber.sourceforge.net) has some benefits over basic BLAST. Input into the BER tool includes the underlying DNA sequence for each protein as well as 300 nucleotides upstream and downstream of the predicted boundaries of the protein coding sequence. This allows annotators to see the DNA sequence that underlies the query protein as part of the alignment. In addition, the BER tool is able to look for continuation of regions of similarity through frameshifts and in-frame stop codons.  If such regions are found the alignment is continued. BER searches are done in a two-step process: step one is a BLAST search against a non-redundant protein database, significant BLAST hits are stored in a mini-database for each query protein; step two is a modified Smith-Waterman alignment between the query and the proteins in its mini-database. In order to assess whether a given BER alignment is good enough to assert that the query shares the function of the match protein, one must look at a several factors. First of all, the match protein must itself be experimentally characterized in order to avoid transitive annotation errors. In addition, any residues or secondary structures known to be important for function in the match protein must be conserved in the query. The alignment should be visually inspected to look for any areas of lesser quality that might indicate the two proteins do not share the same function. Although it is impossible to set cutoff values for percent identity and length of match that will apply for every alignment, there are some guidelines. In general at least 40% identity that extends over the full lengths of both proteins is required in order to even consider functional equivalence. However, this percentage is highly dependent on the length and complexity of the proteins. 40% identity between two proteins 500 amino acids long is much more significant that 40% identity between two proteins that are only 100 amino acids long. Therefore, the annotator's experience and knowledge of what is considered significant for the organism and protein family in question is very important. Some sets of proteins are much more highly conserved than others and therefore tolerances for percent identity may have to be adjusted. Finally, the alignment must be considered in the context of what else is known about the query protein and the organism as a whole.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Michelle Gwinn, TIGR curators","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Pairwise alignment (TIGR)","uniquename":"GO_REF:0000012"}


id: GO_REF:0000011
data:
  {"abstract":"A Hidden Markov Model (HMM) is a statistical representation of patterns found in a data set. When using HMMs with proteins, the HMM is a statistical model of the patterns of the amino acids found in a multiple alignment of a set of proteins called the \"seed\". Seed proteins are chosen based on sequence similarity to each other. Seed members can be chosen with different levels of relationship to each other. They can be members of a superfamily (ex. ABC transporter, ATP-binding proteins), they can all share the same exact specific function (ex. biotin synthase) or they could share another type of relationship of intermediate specificity (ex. subfamily, domain). New proteins can be scored against the model generated from the seed according to how closely the patterns of amino acids in the new proteins match those in the seed. There are two scores assigned to the HMM which allow annotators to judge how well any new protein scores to the model. Proteins scoring above the \"trusted cutoff\" score can be assumed to be part of the group defined by the seed. Proteins scoring below the \"noise cutoff\" score can be assumed to NOT be a part of the group. Proteins scoring between the trusted and noise cutoffs may be part of the group but may not. One of the important features of HMMs is that they are built from a multiple alignment of protein sequences, not a pairwise alignment. This is significant, since shared similarity between many proteins is much more likely to indicate shared functional relationship than sequence similarity between just two proteins. The usefulness of an HMM is directly related to the amount of care that is taken in chosing the seed members, building a good multiple alignment of the seed members, assessing the level of specificity of the model, and choosing the cutoff scores correctly. In order to properly assess what functional relevance an above-trusted scoring HMM match has to a query, one must carefully determine what the functional scope of the HMM is. If the HMM models proteins that all share the same function then it is likely possible to assign a specific function to high-scoring match proteins based on the HMM. If the HMM models proteins that have a wide variety of functions, then it will not be possible to assign a specific function to the query based on the HMM match, however, depending on the nature of the HMM in question, it may be possible to assign a more general (family or subfamily level) function. In order to determine the functional scope of an HMM, one must carefully read the documentation associated with the HMM. The annotator must also consider whether the function attributed to the proteins in the HMM makes sense for the query based on what is known about the organism in which the query protein resides and in light of any other information that might be available about the query protein. After carefully considering all of these issues the annotator makes an annotation.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Michelle Gwinn, TIGR curators","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Hidden Markov Models (TIGR)","uniquename":"GO_REF:0000011"}


id: PMID:24699070
data:
  {"abstract":"The post-cytokinetic separation of cells in cell-walled organisms involves enzymic processes that degrade a specific layer of the division septum and the region of the mother cell wall that edges the septum. In the fission yeast Schizosaccharomyces pombe, the 1,3-α-glucanase Agn1p, originally identified as a mutanase-like glycoside hydrolase family 71 (GH71) enzyme, dissolves the mother cell wall around the septum edge. Our search in the genomes of completely sequenced fungi identified GH71 hydrolases in Basidiomycota, Taphrinomycotina and Pezizomycotina, but not in Saccharomycotina. The most likely Agn1p orthologues in Pezizomycotina species are not mutanases having mutanase-binding domains, but experimentally non-characterized hypothetical proteins that have no carbohydrate-binding domains. The analysis of the GH71 domains corroborated the phylogenetic relationships of the Schizosaccharomyces species determined by previous studies, but suggested a closer relationship to the Basidiomycota proteins than to the Ascomycota proteins. In the Schizosaccharomyces genus, the Agn1p proteins are structurally conserved: their GH71 domains are flanked by N-terminal secretion signals and C-terminal sequences containing the conserved block YNFNA(Y)/HTG. The inactivation of the agn1(Sj) gene in Schizosaccharomyces japonicus, the only true dimorphic member of the genus, caused a severe cell-separation defect in its yeast phase, but had no effect on the hyphal growth and yeast-to-mycelium transition. It did not affect the mycelium-to-yeast transition either, only delaying the separation of the yeast cells arising from the fragmenting hyphae. The heterologous expression of agn1(Sj) partially rescued the separation defect of the agn1Δ cells of Schizosaccharomyces pombe. The results presented indicate that the fission yeast Agn1p 1,3-α-glucanases of Schizosaccharomyces japonicus and Schizosaccharomyces pombe share conserved functions in the yeast phase. ","alleles_by_uniquename":{"SJAG_03444:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03444","name":"agn1delta","uniquename":"SJAG_03444:allele-1"}},"annotation_curators":[{"annotation_count":1,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"},{"annotation_count":1,"community_curator":false,"file_name":null,"file_type":null,"name":"Val Wood","orcid":"0000-0001-6330-7526"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-07-09","authors":"Sipiczki M, Balazs A, Monus A, Papp L, Horvath A, Sveiczer A, Miklos I","authors_abbrev":"Sipiczki M et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2021-09-01 07:35:20","canto_approver_orcid":"0000-0001-6330-7526","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-07-09 13:16:43","canto_session_key":"b8bc1733e6f2c600","canto_session_submitted_date":"2021-07-09 13:16:35","canto_triage_status":"Curatable","citation":"Microbiology (Reading) 2014 Jun;160(Pt 6):1063-1074","cv_annotations":{"biological_process":[{"annotations":[115649],"is_not":false,"summary":null,"term":"GO:0030995"}],"single_locus_phenotype":[{"annotations":[115648],"is_not":false,"summary":null,"term":"FYPO:0001971"}]},"doi":"10.1099/mic.0.077511-0","gene_count":1,"genes_by_uniquename":{"SJAG_03444":null},"genotypes_by_uniquename":{"agn1delta":{"display_name":"agn1delta","display_uniquename":"agn1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03444:allele-1","expression":"Null"}]}]}},"ltp_gene_count":1,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2014","pubmed_entrez_date":"2014-04-05","pubmed_publication_date":"Jun 2014","terms_by_termid":{"FYPO:0001971":null,"GO:0030995":null},"title":"Phylogenetic and comparative functional analysis of the cell-separation α-glucanase Agn1p in Schizosaccharomyces.","uniquename":"PMID:24699070"}


id: GO_REF:0000107
data:
  {"abstract":"GO terms from a source species are projected onto one or more target species based on gene orthology obtained from Ensembl Compara. One-to-one, one-to-many and many-to-many orthology relations and anntations are transferred between orthologs that have at least a 40% peptide identity to each other. Only GO annotations with evidence codes ECO:0000314 (IDA), ECO:0000270 (IEP), ECO:0000316 (IGI), ECO:0000315 (IMP), and ECO:0000353 (IPI), or their descendants, are transferred; annotations with a 'NOT' qualifier are not transferred, and neither are annotations to GO:0005515 (protein binding). Annotations that are transferred using this method receive the evidence code ECO:0000265 (sequence orthology evidence used in automatic assertion), which maps up to the GO Inferred from Electronic Annotation (IEA) evidence code.  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