# terms

id: GO:1901826
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of zeaxanthin.","definition_xrefs":["GOC:TermGenie","MetaCyc:PWY-5944","UniPathway:UPA00843","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xanthophyll catabolic process","termid":"GO:0016124"},{"relation_name":"is_a","term_name":"zeaxanthin metabolic process","termid":"GO:1901825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"zeaxanthin catabolic process","synonyms":[{"name":"zeaxanthin breakdown","type":"exact"},{"name":"zeaxanthin catabolism","type":"exact"},{"name":"zeaxanthin degradation","type":"exact"}],"termid":"GO:1901826"}


id: PBO:0039615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annexin A2 pseudogene 2","termid":"PBO:0039615"}


id: GO:0043007
data:
  {"annotated_genes":["SJAG_04816","SJAG_01050","SJAG_00247","SJAG_03898","SJAG_04855","SJAG_04671","SJAG_03997","SJAG_05180","SJAG_05237"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92072,95341,97229,113224],"is_not":false,"summary":null,"term":"GO:0043007"},{"annotations":[100482],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045458"},{"annotations":[99289],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1902681"},{"annotations":[111087,98340,95421],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031582"}]},"cv_name":"biological_process","definition":"Any process involved in sustaining the fidelity and copy number of rDNA repeats.","definition_xrefs":["PMID:14528010","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of DNA repeat elements","termid":"GO:0043570"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00247":null,"SJAG_01050":null,"SJAG_03898":null,"SJAG_03997":null,"SJAG_04671":null,"SJAG_04816":null,"SJAG_04855":null,"SJAG_05180":null,"SJAG_05237":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"maintenance of rDNA","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"rDNA maintenance","type":"exact"},{"name":"ribosomal DNA maintenance","type":"exact"}],"termid":"GO:0043007","terms_by_termid":{"GO:0031582":null,"GO:0043007":null,"GO:0045458":null,"GO:1902681":null}}


id: GO:0102197
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: but-3-enoate + H2O = allyl alcohol + formate.","definition_xrefs":["PMID:19555778","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016788","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"vinylacetate caboxylester hydrolase activity","secondary_identifiers":["MetaCyc:RXN-12087"],"termid":"GO:0102197"}


id: FYPO:0006864
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cut phenotype that is observed when a cell is exposed to streptonigrin. In a cut phenotype, a cell undergoes septation despite abnormal chromosome segregation.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete cut during cellular response to streptonigrin (obsolete FYPO:0006864)","synonyms":[{"name":"cut during cellular response to rufocromomycin","type":"exact"},{"name":"cut during cellular response to streptonigrin during mitotic cell cycle","type":"related"},{"name":"cut during cellular response to streptonigrin during vegetative growth","type":"exact"},{"name":"septation following abnormal chromosome segregation during cellular response to streptonigrin","type":"exact"}],"termid":"FYPO:0006864"}


id: PBO:0073783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC5A4 antisense RNA 1","termid":"PBO:0073783"}


id: PBO:0048392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth arrest specific 2","termid":"PBO:0048392"}


id: GO:0015049
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: methane + NAD(P)H + H+ + O2 = methanol + NAD(P)+ + H2O.","definition_xrefs":["EC:1.14.13.25","PMID:10896210"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"methane monooxygenase [NAD(P)H] activity","secondary_identifiers":["MetaCyc:METHANE-MONOOXYGENASE-RXN","UM-BBD_enzymeID:r0237"],"synonyms":[{"name":"methane hydroxylase activity","type":"related"},{"name":"methane,NAD(P)H:oxygen oxidoreductase (hydroxylating)","type":"related"}],"termid":"GO:0015049"}


id: GO:0019171
data:
  {"annotated_genes":["SJAG_04107","SJAG_00305"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96800,98109],"is_not":false,"summary":null,"term":"GO:0019171"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a (3R)-hydroxyacyl-[acyl-carrier-protein] = a (2E)-enoyl-[acyl-carrier-protein] + H2O.","definition_xrefs":["RHEA:13097"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00305":null,"SJAG_04107":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"(3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:4.2.1.59","MetaCyc:3-HYDROXYDECANOYL-ACP-DEHYDR-RXN"],"synonyms":[{"name":"(3R)-3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity","type":"related"},{"name":"3-hydroxyacyl-ACP dehydratase activity","type":"exact"},{"name":"3-hydroxyacyl-[acyl-carrier protein] dehydratase activity","type":"exact"},{"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity","type":"broad"}],"termid":"GO:0019171","terms_by_termid":{"GO:0019171":null}}


id: PBO:0029950
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_level_of_substance_in_cytosol","termid":"PBO:0029950"}


id: PR:Q9UTC4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- reg1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTC4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C227.15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC227.15","synonyms":[{"name":"Spom972h-reg1","type":"exact"}],"termid":"PR:Q9UTC4"}


id: GO:0070988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of removing one or more methyl groups from a molecule.","definition_xrefs":["GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"demethylation","termid":"GO:0070988"}


id: PBO:0041235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 1 open reading frame 74","termid":"PBO:0041235"}


id: PBO:0041269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C1q like 1 pseudogene 1","termid":"PBO:0041269"}


id: GO:1902114
data:
  {"annotated_genes":["SJAG_02496"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110812],"is_not":false,"summary":null,"term":"GO:1902114"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving D-valine.","definition_xrefs":["PMID:23085840","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"valine metabolic process","termid":"GO:0006573"},{"relation_name":"is_a","term_name":"D-amino acid metabolic process","termid":"GO:0046416"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02496":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"D-valine metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"D-valine metabolism","type":"exact"}],"termid":"GO:1902114","terms_by_termid":{"GO:1902114":null}}


id: PBO:0003266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit Mrp21 (predicted)","termid":"PBO:0003266"}


id: PBO:0056413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane associated ring-CH-type finger 10","termid":"PBO:0056413"}


id: SO:0002326
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A splice_donor_variant (SO:0001575) that allows the transcript to escape nonsense-mediated decay (NMD).","definition_xrefs":["GenCC:AR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"splice_donor_variant","termid":"SO:0001575"},{"relation_name":"is_a","term_name":"NMD_escaping_variant","termid":"SO:0002320"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splice_donor_variant_NMD_escaping","synonyms":[{"name":"splice donor variant-NMD escaping","type":"exact"},{"name":"splice donor variant-nonsense-mediated decay escaping","type":"exact"}],"termid":"SO:0002326"}


id: PBO:0073614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SID1 transmembrane family member 1","termid":"PBO:0073614"}


id: PBO:0064215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PLCB1 intronic transcript 1","termid":"PBO:0064215"}


id: PBO:0041009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BORCS8 pseudogene 1","termid":"PBO:0041009"}


id: GO:0006833
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fluid transport","termid":"GO:0042044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"water transport","termid":"GO:0006833"}


id: PBO:0053264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA ligase 1","termid":"PBO:0053264"}


id: PBO:0113206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial DNA-binding and packaging factor; mtDNA maintenance factor involved in mitochondrial DNA replication and recombination, regulating mtDNA copy number in opposition to DPI34; HMG1 DNA-binding protein family member containing two HMG-boxes; activity may be regulated by protein kinase A phosphorylation; ABF2 has a paralog, IXR1, that arose from the whole genome duplication; human homolog TFAM can complement yeast abf2 mutant, rescuing the loss-of-mitochondrial DNA phenotype","termid":"PBO:0113206"}


id: PBO:0086788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; physical interaction with Atg27p suggests a possible role in autophagy","termid":"PBO:0086788"}


id: PBO:0062483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily A member 2 pseudogene","termid":"PBO:0062483"}


id: PBO:0018080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PWWP domain protein Pdp2 (predicted)","termid":"PBO:0018080"}


id: PBO:0070916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 24","termid":"PBO:0070916"}


id: GO:0008104
data:
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id: GO:0120151
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id: FYPO:0006164
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id: GO:1901235
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of (R)-carnitine from one side of a membrane to the other.","definition_xrefs":["PMID:20829798","PMID:20357772","GOC:TermGenie","PMID:16365042"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carnitine transmembrane transporter activity","termid":"GO:0015226"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"(R)-carnitine transmembrane transporter activity","secondary_identifiers":["RHEA:34959"],"termid":"GO:1901235"}


id: FYPO:0004115
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce an inviable cell that does not divide, and that has a septum with abnormal size, shape, or structure and a nucleus that is larger than normal.","definition_xrefs":["PomBase:mah","PMID:15116432"],"direct_ancestors":[{"relation_name":"has_part","term_name":"enlarged nucleus during vegetative growth","termid":"FYPO:0000344"},{"relation_name":"is_a","term_name":"enlarged nucleus during vegetative growth","termid":"FYPO:0000344"},{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division, abnormal septum morphology","termid":"FYPO:0004114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0002403"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001320","FYPO:0000032","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0002403","FYPO:0000631"],"is_obsolete":false,"name":"inviable after spore germination, without cell division, abnormal septum morphology, enlarged nucleus","synonyms":[{"name":"inviable after spore germination, undivided cell, abnormal septum morphology, enlarged nucleus","type":"exact"},{"name":"inviable after spore germination, without cell division, abnormal septum formation, enlarged nucleus","type":"exact"},{"name":"inviable following spore germination, without cell division, abnormal septum morphology, enlarged nucleus","type":"exact"},{"name":"inviable germinated spore, without cell division, abnormal septum morphology, enlarged nucleus","type":"exact"},{"name":"lethal after spore germination, without cell division, abnormal septum morphology, enlarged nucleus","type":"exact"}],"termid":"FYPO:0004115"}


id: PBO:0049474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"granzyme K","termid":"PBO:0049474"}


id: GO:0071451
data:
  {"annotated_genes":["SJAG_01734","SJAG_04632","SJAG_04403","SJAG_05181","SJAG_03303","SJAG_04788","SJAG_00668","SJAG_04399","SJAG_03653"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89182,106145,67556,64549,58048,95333,85047,85470,106189,96218],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0019430"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to superoxide","termid":"GO:0000303"},{"relation_name":"is_a","term_name":"cellular response to oxygen radical","termid":"GO:0071450"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00668":null,"SJAG_01734":null,"SJAG_03303":null,"SJAG_03653":null,"SJAG_04399":null,"SJAG_04403":null,"SJAG_04632":null,"SJAG_04788":null,"SJAG_05181":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to superoxide","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"termid":"GO:0071451","terms_by_termid":{"GO:0019430":null}}


id: PBO:0002188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRAPP complex subunit 2-like (predicted)","termid":"PBO:0002188"}


id: GO:0047457
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: linear alpha-D-glucan = 1,5-anhydro-D-fructose + beta-D-glucose.","definition_xrefs":["EC:4.2.2.13","MetaCyc:4.2.2.13-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"exo-(1,4)-alpha-D-glucan lyase activity","synonyms":[{"name":"(1->4)-alpha-D-glucan exo-4-lyase (1,5-anhydro-D-fructose-forming)","type":"related"},{"name":"alpha-(1->4)-glucan 1,5-anhydro-D-fructose eliminase activity","type":"related"},{"name":"alpha-1,4-glucan 1,5-anhydro-D-fructose eliminase activity","type":"related"},{"name":"alpha-1,4-glucan exo-lyase activity","type":"related"},{"name":"alpha-1,4-glucan lyase activity","type":"broad"},{"name":"exo-(1->4)-alpha-D-glucan lyase activity","type":"related"},{"name":"exo-alpha-1,4-glucan lyase activity","type":"related"}],"termid":"GO:0047457"}


id: PBO:0086277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a possible role in tRNA export; shows similarity to 6-phosphogluconolactonase non-catalytic domains but does not exhibit this enzymatic activity; homologous to Sol3p and Sol4p; SOL2 has a paralog, SOL1, that arose from the whole genome duplication","termid":"PBO:0086277"}


id: GO:0042304
data:
  {"annotated_genes":["SJAG_03130"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107321],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045717"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of fatty acids, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils.","definition_xrefs":["GOC:jl","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of fatty acid metabolic process","termid":"GO:0019217"},{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of lipid biosynthetic process","termid":"GO:0046890"},{"relation_name":"regulates","term_name":"fatty acid biosynthetic process","termid":"GO:0006633"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03130":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"regulation of fatty acid biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of fatty acid anabolism","type":"exact"},{"name":"regulation of fatty acid biosynthesis","type":"exact"},{"name":"regulation of fatty acid formation","type":"exact"},{"name":"regulation of fatty acid synthesis","type":"exact"}],"termid":"GO:0042304","terms_by_termid":{"GO:0045717":null}}


id: GO:0019118
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a phenanthrene dioxide + H2O = a dihydrodiolphenanthrene.","definition_xrefs":["UM-BBD_reactionID:r0536","GOC:mah","UM-BBD_reactionID:r0535"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epoxide hydrolase activity","termid":"GO:0004301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"phenanthrene-epoxide hydrolase activity","termid":"GO:0019118"}


id: GO:1902170
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive nitrogen species stimulus.","definition_xrefs":["GOC:TermGenie","PMID:22504638","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to reactive nitrogen species","secondary_identifiers":["GO:1990106"],"termid":"GO:1902170"}


id: GO:1990445
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a relatively unspecialized cell acquires features of a multiciliated cell, a specialized epithelial cell type that extends anywhere from 150 to 200 motile cilia per cell in order to produce a vigorous fluid flow critical to human health in several organ systems.","definition_xrefs":["PMID:24934224","PMID:22231168"],"gene_count":0,"genotype_count":0,"name":"obsolete Multiciliate cell differentiation (obsolete GO:1990445)","synonyms":[{"name":"Multiciliate cell differentiation","type":"exact"}],"termid":"GO:1990445"}


id: PBO:0055977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LRRK2 divergent transcript","termid":"PBO:0055977"}


id: GO:0008184
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate.","definition_xrefs":["MetaCyc:GLYCOPHOSPHORYL-RXN","EC:2.4.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"1,4-alpha-oligoglucan phosphorylase activity","termid":"GO:0004645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"glycogen phosphorylase activity","secondary_identifiers":["Reactome:R-HSA-453358","Reactome:R-HSA-71590","Reactome:R-HSA-453339","Reactome:R-HSA-71515"],"termid":"GO:0008184"}


id: GO:0035393
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of chemokine (C-X-C motif) ligand 9 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"chemokine (C-X-C motif) ligand 9 production","synonyms":[{"name":"CXCL9 production","type":"exact"},{"name":"MIG production","type":"exact"},{"name":"Monokine induced by gamma interferon production","type":"exact"}],"termid":"GO:0035393"}


id: GO:0015106
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of bicarbonate from one side of a membrane to the other. Bicarbonate is the hydrogencarbonate ion, HCO3-.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transmembrane transporter activity","termid":"GO:0008514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"bicarbonate transmembrane transporter activity","secondary_identifiers":["RHEA:28695","Reactome:R-HSA-2752067"],"synonyms":[{"name":"hydrogencarbonate transmembrane transporter activity","type":"exact"}],"termid":"GO:0015106"}


id: GO:0009416
data:
  {"annotated_genes":["SJAG_02334","SJAG_02182","SJAG_03898","SJAG_00272","SJAG_02200","SJAG_04877","SJAG_02818","SJAG_05242","SJAG_02828","SJAG_00729","SJAG_01262","SJAG_02860","SJAG_02199","SJAG_04150","SJAG_00208","SJAG_01010","SJAG_05197","SJAG_00863","SJAG_04190","SJAG_01648","SJAG_00814"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65674],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009785"},{"annotations":[115247,115248],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071483"},{"annotations":[100976,91296,105162,98891],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1904161"},{"annotations":[107482,91117,84083,93192,106879,90024,101985,103035,108890,89715,85643,100293,91330,92079,108337],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070914"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.","definition_xrefs":["GOC:go_curators","ISBN:0582227089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to radiation","termid":"GO:0009314"}],"gene_count":21,"genes_by_uniquename":{"SJAG_00208":null,"SJAG_00272":null,"SJAG_00729":null,"SJAG_00814":null,"SJAG_00863":null,"SJAG_01010":null,"SJAG_01262":null,"SJAG_01648":null,"SJAG_02182":null,"SJAG_02199":null,"SJAG_02200":null,"SJAG_02334":null,"SJAG_02818":null,"SJAG_02828":null,"SJAG_02860":null,"SJAG_03898":null,"SJAG_04150":null,"SJAG_04190":null,"SJAG_04877":null,"SJAG_05197":null,"SJAG_05242":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to light stimulus","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null,"PMID:23873862":null},"termid":"GO:0009416","terms_by_termid":{"GO:0009785":null,"GO:0070914":null,"GO:0071483":null,"GO:1904161":null}}


id: PBO:0041827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteinyl-tRNA synthetase 2, mitochondrial","termid":"PBO:0041827"}


id: FYPO:0005000
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a protein that is not normally found in the nucleus is observed there during interphase of a mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein mislocalized to nucleus during vegetative growth","termid":"FYPO:0000784"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"protein mislocalized to nucleus during mitotic interphase","synonyms":[{"name":"ectopic protein localization to nucleus during mitotic interphase","type":"exact"},{"name":"protein mislocalised to nucleus during interphase during vegetative growth","type":"exact"},{"name":"protein mislocalised to nucleus during mitotic interphase","type":"exact"},{"name":"protein mislocalized to nucleus during interphase during vegetative growth","type":"exact"},{"name":"protein mislocalized to nucleus during interphase of mitotic cell cycle","type":"exact"}],"termid":"FYPO:0005000"}


id: GO:1990692
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The joining of the lipid bilayer membrane around a trans-Golgi-derived vesicle to the lipid bilayer membrane around the medial-Golgi cisterna. Such vesicles include COPI-coated transport vesicles involved in retrograde transport.","definition_xrefs":["PMID:24119662","PMID:16038056","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi vesicle fusion to target membrane","termid":"GO:0048210"},{"relation_name":"is_a","term_name":"vesicle fusion with Golgi apparatus","termid":"GO:0048280"},{"relation_name":"part_of","term_name":"retrograde transport, vesicle recycling within Golgi","termid":"GO:0000301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0016192","GO:0061024"],"is_obsolete":false,"name":"trans-Golgi-derived vesicle fusion with Golgi medial cisterna membrane","synonyms":[{"name":"trans-Golgi-derived vesicle fusion with medial-Golgi cisterna membrane","type":"exact"}],"termid":"GO:1990692"}


id: GO:0033988
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 7alpha,12alpha-dihydroxy-3-oxochol-4-en-24-oate = 12alpha-hydroxy-3-oxochola-4,6-dien-24-oate + H2O.","definition_xrefs":["PMID:26650892","RHEA:10436"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"bile-acid 7alpha-dehydratase activity","secondary_identifiers":["MetaCyc:BA7DEHYDRA-RXN","EC:4.2.1.106","KEGG_REACTION:R07318"],"synonyms":[{"name":"7alpha,12alpha-dihydroxy-3-oxochol-4-enoate hydro-lyase (12alpha-hydroxy-3-oxochola-4,6-dienoate-forming) activity","type":"related"},{"name":"7alpha,12alpha-dihydroxy-3-oxochol-4-enoate hydro-lyase activity","type":"related"},{"name":"BA7 alpha dehydratase activity","type":"related"}],"termid":"GO:0033988"}


id: PBO:0055443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2874","termid":"PBO:0055443"}


id: GO:0000473
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the maturation of a precursor Large SubUnit (LSU) ribosomal RNA (rRNA) molecule into a mature LSU-rRNA molecule from the pre-rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8 S rRNA, 2S rRNA, and Large Subunit (LSU) in that order from 5' to 3' along the primary transcript.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maturation of LSU-rRNA","termid":"GO:0000470"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0042254"}],"interesting_parent_ids":["GO:0042254","GO:0010467","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA)","termid":"GO:0000473"}


id: FYPO:0003842
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that undergoes a single round of cell division in which mitotic sister chromatid separation does not occur, and then dies.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"abolished mitotic sister chromatid separation","termid":"FYPO:0001946"},{"relation_name":"is_a","term_name":"abolished mitotic sister chromatid separation","termid":"FYPO:0001946"},{"relation_name":"is_a","term_name":"inviable after spore germination, single cell division","termid":"FYPO:0002280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"part_of","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000641","FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0001320","FYPO:0000337","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"inviable following spore germination, single cell division, abolished mitotic sister chromatid separation","synonyms":[{"name":"inviable germinated spore, single cell division, abolished mitotic sister chromatid separation","type":"exact"},{"name":"lethal; following spore germination, single cell division, abolished mitotic sister chromatid separation","type":"exact"}],"termid":"FYPO:0003842"}


id: GO:0004365
data:
  {"annotated_genes":["SJAG_03903","SJAG_00027","SJAG_03828","SJAG_06621","SJAG_06622","SJAG_02135","SJAG_02945"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[104998,104999,105000,105001,105002,105003,105004,105445,105446,105447,105448,105449,105450,105451],"is_not":false,"summary":null,"term":"GO:0004365"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+.","definition_xrefs":["EC:1.2.1.12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glyceraldehyde-3-phosphate dehydrogenase [NAD(P)+] (phosphorylating) activity","termid":"GO:0043891"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_02135":null,"SJAG_02945":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-70449","MetaCyc:GAPOXNPHOSPHN-RXN","RHEA:10300","Reactome:R-HSA-70482"],"synonyms":[{"name":"3-phosphoglyceraldehyde dehydrogenase activity","type":"related"},{"name":"D-glyceraldehyde-3-phosphate:NAD+ oxidoreductase (phosphorylating)","type":"related"},{"name":"GAPDH activity","type":"related"},{"name":"NAD-dependent glyceraldehyde phosphate dehydrogenase activity","type":"related"},{"name":"NAD-dependent glyceraldehyde-3-phosphate dehydrogenase activity","type":"related"},{"name":"NADH-glyceraldehyde phosphate dehydrogenase activity","type":"related"},{"name":"dehydrogenase, glyceraldehyde phosphate","type":"related"},{"name":"glyceraldehyde phosphate dehydrogenase (NAD)","type":"related"},{"name":"glyceraldehyde-3-P-dehydrogenase activity","type":"related"},{"name":"phosphoglyceraldehyde dehydrogenase activity","type":"related"},{"name":"triosephosphate dehydrogenase activity","type":"broad"}],"termid":"GO:0004365","terms_by_termid":{"GO:0004365":null}}


id: GO:0045716
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of low-density lipoprotein receptors.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of low-density lipoprotein particle receptor biosynthetic process (obsolete GO:0045716)","synonyms":[{"name":"activation of low-density lipoprotein receptor biosynthetic process","type":"narrow"},{"name":"positive regulation of low-density lipoprotein receptor anabolism","type":"exact"},{"name":"positive regulation of low-density lipoprotein receptor biosynthesis","type":"exact"},{"name":"positive regulation of low-density lipoprotein receptor biosynthetic process","type":"exact"},{"name":"positive regulation of low-density lipoprotein receptor formation","type":"exact"},{"name":"positive regulation of low-density lipoprotein receptor synthesis","type":"exact"},{"name":"stimulation of low-density lipoprotein receptor biosynthetic process","type":"narrow"},{"name":"up regulation of low-density lipoprotein receptor biosynthetic process","type":"exact"},{"name":"up-regulation of low-density lipoprotein receptor biosynthetic process","type":"exact"},{"name":"upregulation of low-density lipoprotein receptor biosynthetic process","type":"exact"}],"termid":"GO:0045716"}


id: FYPO:0003789
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which the frequency of occurrence of the second meiotic nuclear division, in which two chromatids in each chromosome are normally separated, is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased frequency of meiosis","termid":"FYPO:0000476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"decreased frequency of meiosis II","synonyms":[{"name":"decreased frequency of second meiotic nuclear division","type":"exact"},{"name":"decreased meiosis II","type":"exact"},{"name":"meiosis II: decreased frequency","type":"exact"},{"name":"reduced frequency of meiosis II","type":"exact"}],"termid":"FYPO:0003789"}


id: PBO:0088672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ran GTPase binding protein","termid":"PBO:0088672"}


id: FYPO:0002966
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to cytoskeleton during vegetative growth","termid":"FYPO:0003184"},{"relation_name":"is_a","term_name":"normal protein localization during mitosis","termid":"FYPO:0004328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001312","FYPO:0001320","FYPO:0000138","FYPO:0000257"],"is_obsolete":false,"name":"normal protein localization to mitotic spindle","synonyms":[{"name":"normal protein localisation to mitotic spindle","type":"exact"},{"name":"normal protein localization to mitotic spindle during vegetative growth","type":"exact"},{"name":"normal protein localization to spindle during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002966"}


id: PBO:0000131
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.1.1.1","termid":"PBO:0000131"}


id: FYPO:0000671
data:
  {"alleles_by_uniquename":{"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03449:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"man1DHEH","gene_uniquename":"SJAG_03449","name":"Man1DHEH","uniquename":"SJAG_03449:allele-2"},"SJAG_03449:allele-3":{"allele_type":"amino_acid_insertion_and_deletion","description":"man1-1-488","gene_uniquename":"SJAG_03449","name":"man1-1-488","uniquename":"SJAG_03449:allele-3"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115304,115305,115306],"is_not":false,"summary":null,"term":"FYPO:0000671"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitotic sister chromatid separation at the rDNA repeat regions is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic sister chromatid separation","termid":"FYPO:0000670"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03449":null},"genotype_count":3,"genotypes_by_uniquename":{"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Man1DHEH(man1DHEH)","display_uniquename":"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-2","expression":"Not assayed or wild type"}]}]},"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type":{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]},"man1delta":{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0001985","FYPO:0000337","FYPO:0001320","FYPO:0000641","FYPO:0005447"],"is_obsolete":false,"name":"abnormal rDNA separation","references_by_uniquename":{"PMID:24184107":null},"single_locus_annotated_genes":["SJAG_03449"],"single_locus_genotype_uniquenames":["man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","man1delta","Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal mitotic sister chromatid separation at rDNA","type":"exact"},{"name":"abnormal rDNA separation during mitosis","type":"exact"},{"name":"abnormal rDNA separation during mitotic cell cycle","type":"related"},{"name":"abnormal rDNA separation during vegetative growth","type":"exact"},{"name":"abnormal ribosomal DNA separation","type":"exact"},{"name":"abnormal segregation of nucleolar rDNA","type":"related"}],"termid":"FYPO:0000671","terms_by_termid":{"FYPO:0000671":null}}


id: PBO:0087886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional repressor and activator; involved in repression of flocculation-related genes, and activation of stress responsive genes; has direct role in INO1 transcriptional memory; negatively regulated by cAMP-dependent protein kinase A subunit Tpk2p; premature stop codon (C1430T, Q477-stop) in SK1 background is linked to the aggressively invasive phenotype of SK1 relative to BY4741 (S288C)","termid":"PBO:0087886"}


id: PBO:0062657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 13 subfamily C member 7 (gene/pseudogene)","termid":"PBO:0062657"}


id: GO:0051064
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: dTTP + thioredoxin disulfide + H2O = TTP + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin.","definition_xrefs":["MetaCyc:1.17.4.2-RXN"],"gene_count":0,"genotype_count":0,"name":"obsolete TTP reductase activity (obsolete GO:0051064)","synonyms":[{"name":"TTP reduction","type":"related"}],"termid":"GO:0051064"}


id: MOD:01011
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-hydroxysuccinimide (ONSu, OSu)","termid":"MOD:01011"}


id: PBO:0028198
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_beta-glucanase","termid":"PBO:0028198"}


id: PBO:0091855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein P1 Rpp102","termid":"PBO:0091855"}


id: GO:0031229
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the nuclear inner membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of nuclear inner membrane (obsolete GO:0031229)","synonyms":[{"name":"intrinsic to nuclear inner membrane","type":"narrow"}],"termid":"GO:0031229"}


id: PBO:0050768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family H (Hsp110) member 1","termid":"PBO:0050768"}


id: GO:0008331
data:
  {"annotated_genes":["SJAG_05229"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95690],"is_not":false,"summary":null,"term":"GO:0008331"}]},"cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a calcium ion by a high voltage-gated channel. A high voltage-gated channel is a channel whose open state is dependent on high voltage across the membrane in which it is embedded.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport","PMID:16382099"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated calcium channel activity","termid":"GO:0005245"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05229":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"high voltage-gated calcium channel activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"L-type calcium channel","type":"related"},{"name":"N-type calcium channel","type":"related"},{"name":"P-type calcium channel","type":"related"},{"name":"Q-type calcium channel","type":"related"},{"name":"high voltage gated calcium channel activity","type":"exact"},{"name":"high voltage-dependent calcium channel activity","type":"exact"}],"termid":"GO:0008331","terms_by_termid":{"GO:0008331":null}}


id: PATO:0000016
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A scalar optical property that is the intensity, value or amount of perceived light.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"optical quality","termid":"PATO:0001300"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"color brightness","synonyms":[{"name":"color intensity ","type":"exact"},{"name":"color lightness ","type":"exact"},{"name":"color value ","type":"exact"}],"termid":"PATO:0000016"}


id: GO:0102045
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-chlorobenzoate + O2 + a reduced electron acceptor = 3-chlorobenzoate-cis-3,4-diol + an oxidized electron acceptor.","definition_xrefs":["GOC:pz","PMID:8285670"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor","termid":"GO:0016708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"3-chlorobenzoate-3,4-oxygenase activity","secondary_identifiers":["MetaCyc:RXN-10422"],"termid":"GO:0102045"}


id: PBO:0051014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insulin like growth factor 2 mRNA binding protein 1","termid":"PBO:0051014"}


id: GO:0030223
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a myeloid precursor cell acquires the specialized features of a neutrophil.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"granulocyte differentiation","termid":"GO:0030851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neutrophil differentiation","synonyms":[{"name":"neutrophil cell differentiation","type":"exact"},{"name":"neutrophil granulocyte differentiation","type":"exact"},{"name":"neutrophil granulocytopoiesis","type":"exact"}],"termid":"GO:0030223"}


id: GO:0097240
data:
  {"annotated_genes":["SJAG_04142","SJAG_02837","SJAG_02698","SJAG_01538","SJAG_01745","SJAG_02737","SJAG_03449","SJAG_01777","SJAG_01263","SJAG_00727","SJAG_05196"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90662,85140,87392],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140698"},{"annotations":[113016,85659,87393,98882],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072766"},{"annotations":[107277,78180,92779],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990683"},{"annotations":[101994,85831],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070197"},{"annotations":[87399],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140464"}]},"cv_name":"biological_process","definition":"The process in which chromatin is anchored to the nuclear envelope.","definition_xrefs":["GOC:vw","PMID:31635174"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"is_a","term_name":"chromosome localization","termid":"GO:0050000"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00727":null,"SJAG_01263":null,"SJAG_01538":null,"SJAG_01745":null,"SJAG_01777":null,"SJAG_02698":null,"SJAG_02737":null,"SJAG_02837":null,"SJAG_03449":null,"SJAG_04142":null,"SJAG_05196":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0051179"],"is_obsolete":false,"name":"chromosome attachment to the nuclear envelope","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"attachment of chromatin to nuclear envelope","type":"related"}],"termid":"GO:0097240","terms_by_termid":{"GO:0070197":null,"GO:0072766":null,"GO:0140464":null,"GO:0140698":null,"GO:1990683":null}}


id: PBO:0050720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family D (Hsp60) member 1 pseudogene 6","termid":"PBO:0050720"}


id: PBO:0052279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine demethylase 6A","termid":"PBO:0052279"}


id: GO:0052688
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (3R)-3-isopropenyl-6-oxoheptanoate + CoA-SH + ATP = H2O + AMP + diphosphate + (3R)-3-isopropenyl-6-oxoheptanoyl-CoA.","definition_xrefs":["KEGG_REACTION:R06515"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"},{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016874"],"is_obsolete":false,"name":"(3R)-3-isopropenyl-6-oxoheptanoate:CoA ligase (AMP-forming) activity","synonyms":[{"name":"3-isopropenyl-6-oxoheptanoyl-CoA synthetase activity","type":"broad"}],"termid":"GO:0052688"}


id: FYPO:0002138
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of an RNA catabolic process is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"},{"relation_name":"is_a","term_name":"abnormal RNA catabolic process during vegetative growth","termid":"FYPO:0002136"},{"relation_name":"is_a","term_name":"increased RNA catabolic process","termid":"FYPO:0003553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000294"],"is_obsolete":false,"name":"increased RNA catabolic process during vegetative growth","synonyms":[{"name":"increased RNA breakdown during vegetative growth","type":"exact"},{"name":"increased RNA catabolic process during mitotic cell cycle","type":"related"},{"name":"increased RNA catabolism during vegetative growth","type":"exact"},{"name":"increased RNA degradation during vegetative growth","type":"exact"}],"termid":"FYPO:0002138"}


id: PBO:0068341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 113A","termid":"PBO:0068341"}


id: GO:0042558
data:
  {"annotated_genes":["SJAG_01126","SJAG_03224","SJAG_02225","SJAG_01616","SJAG_01198","SJAG_00815","SJAG_03275","SJAG_01466","SJAG_03098","SJAG_04156","SJAG_00529","SJAG_03914","SJAG_02408","SJAG_03712","SJAG_00106","SJAG_01766"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104397,108473],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009257"},{"annotations":[67685],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006761"},{"annotations":[110120],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046452"},{"annotations":[86363,104398,102125,108474,109740,100985,100837],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046656"},{"annotations":[110121],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046655"},{"annotations":[100643],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009396"},{"annotations":[86364,104576],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006729"},{"annotations":[109741,100986,110123,86365,102126],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046654"},{"annotations":[94473,100838,100644,104399,92706,87354,108476,90545],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035999"},{"annotations":[88990,100802],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046901"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving any compound containing pteridine (pyrazino(2,3-dipyrimidine)), e.g. pteroic acid, xanthopterin and folic acid.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00106":null,"SJAG_00529":null,"SJAG_00815":null,"SJAG_01126":null,"SJAG_01198":null,"SJAG_01466":null,"SJAG_01616":null,"SJAG_01766":null,"SJAG_02225":null,"SJAG_02408":null,"SJAG_03098":null,"SJAG_03224":null,"SJAG_03275":null,"SJAG_03712":null,"SJAG_03914":null,"SJAG_04156":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pteridine-containing compound metabolic process","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["GO:0019721"],"synonyms":[{"name":"pteridine and derivative metabolic process","type":"exact"},{"name":"pteridine and derivative metabolism","type":"exact"},{"name":"pteridine-containing compound metabolism","type":"exact"},{"name":"pterin metabolic process","type":"narrow"},{"name":"pterin metabolism","type":"narrow"}],"termid":"GO:0042558","terms_by_termid":{"GO:0006729":null,"GO:0006761":null,"GO:0009257":null,"GO:0009396":null,"GO:0035999":null,"GO:0046452":null,"GO:0046654":null,"GO:0046655":null,"GO:0046656":null,"GO:0046901":null}}


id: FYPO:0000328
data:
  {"alleles_by_uniquename":{"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_01787:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01787","name":"pck1delta","uniquename":"SJAG_01787:allele-1"},"SJAG_04551:allele-2":{"allele_type":"amino_acid_insertion","description":"82-NITCIYDLDIIINPYNFNEVYIYEE-105","gene_uniquename":"SJAG_04551","name":"Pmk1Sj(ins82-105)","uniquename":"SJAG_04551:allele-2"},"SJAG_04551:allele-4":{"allele_type":"partial_amino_acid_deletion","description":"Pmk1 from S. pombe with deleted residues 82-105","gene_uniquename":"SJAG_04551","name":"Pmk1Sp(delta82-105)","uniquename":"SJAG_04551:allele-4"},"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115606],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002033"},{"annotations":[115598,115602],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001838"},{"annotations":[115424],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0003727"},{"annotations":[115592],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001038"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle that affects protein metabolism in the cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal metabolic process during vegetative growth","termid":"FYPO:0001363"},{"relation_name":"is_a","term_name":"abnormal protein metabolic process","termid":"FYPO:0002274"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00610":null,"SJAG_01787":null,"SJAG_04551":null,"SJAG_04697":null},"genotype_count":5,"genotypes_by_uniquename":{"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sj(ins82-105)(82-NITCIYDLDIIINPYNFNEVYIYEE-105)","display_uniquename":"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-2","expression":"Not assayed or wild type"}]}]},"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sp(delta82-105)(Pmk1 from S. pombe with deleted residues 82-105 Δaa)","display_uniquename":"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-4","expression":"Not assayed or wild type"}]}]},"gms1delta":{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]},"pck1delta":{"display_name":"pck1delta","display_uniquename":"pck1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]}]},"pck2delta":{"display_name":"pck2delta","display_uniquename":"pck2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00610:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal protein metabolic process during vegetative growth","references_by_uniquename":{"PMID:34198697":null,"PMID:36058798":null},"single_locus_annotated_genes":["SJAG_01787","SJAG_04551","SJAG_04697","SJAG_00610"],"single_locus_genotype_uniquenames":["Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","gms1delta","pck2delta","Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","pck1delta"],"synonyms":[{"name":"abnormal cellular protein metabolic process during vegetative growth","type":"exact"},{"name":"abnormal protein metabolic process during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000328","terms_by_termid":{"FYPO:0001038":null,"FYPO:0001838":null,"FYPO:0002033":null,"FYPO:0003727":null,"FYPO_EXT:0000001":null}}


id: PBO:0071381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L30 pseudogene 4","termid":"PBO:0071381"}


id: RO:0008506
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"An interaction relationship describing organisms that often occur together at the same time and space or in the same environment.","direct_ancestors":[{"relation_name":"is_a","term_name":"ecologically_related_to","termid":"RO:0002321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"co-occurs","termid":"RO:0008506"}


id: PBO:0077247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane and death domain 1","termid":"PBO:0077247"}


id: PBO:0084461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mannosyltransferase of the cis-Golgi apparatus; initiates the polymannose outer chain elongation of N-linked oligosaccharides of glycoproteins","termid":"PBO:0084461"}


id: GO:0036298
data:
  {"annotated_genes":["SJAG_05280","SJAG_03994","SJAG_02294","SJAG_01410"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95124,96706,99258,107647],"is_not":false,"summary":null,"term":"GO:0036298"}]},"cv_name":"biological_process","definition":"Removal of a DNA interstrand crosslink (a covalent attachment of DNA bases on opposite strands of the DNA) and restoration of the DNA by a mechanism that involves the exchange, reciprocal or nonreciprocal, of genetic material between the broken DNA molecule and a homologous DNA region.","definition_xrefs":["GOC:vw","PMID:20658649"],"direct_ancestors":[{"relation_name":"is_a","term_name":"recombinational repair","termid":"GO:0000725"},{"relation_name":"is_a","term_name":"interstrand cross-link repair","termid":"GO:0036297"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01410":null,"SJAG_02294":null,"SJAG_03994":null,"SJAG_05280":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006281","GO:0006310","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"recombinational interstrand cross-link repair","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Fanconi pathway","type":"related"},{"name":"recombination-dependent interstrand cross-link repair","type":"exact"}],"termid":"GO:0036298","terms_by_termid":{"GO:0036298":null}}


id: FYPO:0006504
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which a cell forms two or more shmoos, usually in succession, without fusing with a partner cell. Cell fusion may or may not subsequently occur.","definition_xrefs":["PomBase:mah","PMID:29453312"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal shmoo formation","termid":"FYPO:0000568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000301"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000301"],"is_obsolete":false,"name":"multiple shmoo formation","synonyms":[{"name":"formation of multiple mating projections","type":"exact"},{"name":"formation of multiple shmoos","type":"exact"},{"name":"multiple mating projection assembly","type":"exact"}],"termid":"FYPO:0006504"}


id: GO:0001874
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with (1->3)-beta-D-glucans to initiate an innate immune response.","definition_xrefs":["PMID:14707091"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide immune receptor activity","termid":"GO:0001873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"(1->3)-beta-D-glucan immune receptor activity","synonyms":[{"name":"(1,3)-beta-D-glucan receptor activity","type":"exact"},{"name":"(1->3)-beta-D-glucan receptor activity","type":"broad"},{"name":"1,3-beta-D-glucan receptor activity","type":"exact"},{"name":"beta-1,3-D-glucan receptor activity","type":"exact"},{"name":"zymosan receptor activity","type":"narrow"}],"termid":"GO:0001874"}


id: PBO:0080635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 83","termid":"PBO:0080635"}


id: PATO:0001399
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers and extraembryonic cell types.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Totipotent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular potency","termid":"PATO:0001397"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"totipotent","termid":"PATO:0001399"}


id: PBO:0070005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1301, pseudogene","termid":"PBO:0070005"}


id: GO:0051982
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of the copper chelate copper-nicotianamine (Cu-NA) from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"copper chelate transmembrane transporter activity","termid":"GO:0051981"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"copper-nicotianamine transmembrane transporter activity","synonyms":[{"name":"Cu-NA chelate transporter activity","type":"exact"}],"termid":"GO:0051982"}


id: GO:1905943
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of formation of growth cone in injured axon.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:19737525"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of sprouting of injured axon","termid":"GO:0048688"},{"relation_name":"is_a","term_name":"regulation of formation of growth cone in injured axon","termid":"GO:1905942"},{"relation_name":"negatively_regulates","term_name":"formation of growth cone in injured axon","termid":"GO:0048689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of formation of growth cone in injured axon","synonyms":[{"name":"down regulation of formation of growth cone in injured axon","type":"exact"},{"name":"down-regulation of formation of growth cone in injured axon","type":"exact"},{"name":"downregulation of formation of growth cone in injured axon","type":"exact"},{"name":"inhibition of formation of growth cone in injured axon","type":"narrow"}],"termid":"GO:1905943"}


id: GO:0005260
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables passage of a chloride ion through a transmembrane channel that opens when ATP is bound by the channel complex or one of its constituent parts on the intracellular side of the plasma membrane.","definition_xrefs":["PMID:9922375","PMID:24727426"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chloride channel activity","termid":"GO:0005254"},{"relation_name":"is_a","term_name":"ligand-gated monoatomic anion channel activity","termid":"GO:0099095"},{"relation_name":"is_a","term_name":"intracellularly ATP-gated ion channel activity","termid":"GO:0099142"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"intracellularly ATP-gated chloride channel activity","secondary_identifiers":["GO:0005224","Wikipedia:Cystic_fibrosis_transmembrane_conductance_regulator","EC:5.6.1.6","MetaCyc:3.6.3.49-RXN","TC:3.A.1.202.1"],"synonyms":[{"name":"CFTR","type":"exact"},{"name":"channel-conductance-controlling ATPase activity","type":"related"},{"name":"cystic fibrosis transmembrane conductance regulator","type":"narrow"}],"termid":"GO:0005260"}


id: PBO:0079385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta 2A class IIa","termid":"PBO:0079385"}


id: GO:1904141
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of microglial cell migration.","definition_xrefs":["GO_REF:0000058","GOC:BHF","PMID:19100238","GOC:TermGenie","GOC:nc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of glial cell migration","termid":"GO:1903977"},{"relation_name":"is_a","term_name":"regulation of microglial cell migration","termid":"GO:1904139"},{"relation_name":"is_a","term_name":"positive regulation of macrophage migration","termid":"GO:1905523"},{"relation_name":"positively_regulates","term_name":"microglial cell migration","termid":"GO:1904124"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of microglial cell migration","synonyms":[{"name":"activation of microglial cell migration","type":"narrow"},{"name":"up regulation of microglial cell migration","type":"exact"},{"name":"up-regulation of microglial cell migration","type":"exact"},{"name":"upregulation of microglial cell migration","type":"exact"}],"termid":"GO:1904141"}


id: GO:0045765
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of angiogenesis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anatomical structure morphogenesis","termid":"GO:0022603"},{"relation_name":"is_a","term_name":"regulation of vasculature development","termid":"GO:1901342"},{"relation_name":"regulates","term_name":"angiogenesis","termid":"GO:0001525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of angiogenesis","termid":"GO:0045765"}


id: PBO:0089880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor Spf30","termid":"PBO:0089880"}


id: GO:0046586
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the attachment of one cell to another cell via adhesion molecules that require the presence of calcium for the interaction.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell-cell adhesion","termid":"GO:0022407"},{"relation_name":"regulates","term_name":"calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules","termid":"GO:0016339"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"regulation of calcium-dependent cell-cell adhesion","termid":"GO:0046586"}


id: GO:1903424
data:
  {"annotated_genes":["SJAG_01973"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96877,109804],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140116"}]},"cv_name":"biological_process","definition":"The process in which fluoride is transported across a membrane.","definition_xrefs":["GOC:TermGenie","GO_REF:0000069","PMID:24173035"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic anion transmembrane transport","termid":"GO:0098656"},{"relation_name":"is_a","term_name":"inorganic anion transmembrane transport","termid":"GO:0098661"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01973":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"fluoride transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"fluoride membrane transport","type":"exact"},{"name":"transmembrane fluoride transport","type":"exact"}],"termid":"GO:1903424","terms_by_termid":{"GO:0140116":null}}


id: PBO:0048544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guided entry of tail-anchored proteins factor 4","termid":"PBO:0048544"}


id: PBO:0082401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Beta subunit of the capping protein heterodimer (Cap1p and Cap2p); capping protein (CP) binds to the barbed ends of actin filaments preventing further polymerization; localized predominantly to cortical actin patches; protein increases in abundance and relocalizes from bud neck to plasma membrane upon DNA replication stress","termid":"PBO:0082401"}


id: PR:000085719
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H3.3, initiator methionine removed form (Schizosaccharomyces pombe) that has been methylated on Lys-36. Example: UniProtKB:P10651, 2-136, Lys-37, MOD:00663.","definition_xrefs":["PMID:37459529","PRO:DAN","PomBase:VW"],"direct_ancestors":[{"relation_name":"has_part","term_name":"methylated lysine","termid":"MOD:00663"},{"relation_name":"is_a","term_name":"fungal histone H3.3, initiator methionine removed form (Schizosaccharomyces pombe)","termid":"PR:000027598"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hht3/Me(K36)","pombase_gene_id":"SPBC1105.11c","synonyms":[{"name":"PRO_0000221367, Lys-37, MOD:00663","type":"exact"},{"name":"PomBase_original_PRO_term_name: histone H3.3, initiator methionine removed K36-methylated form (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-hht3/InitMet-/K36Me","type":"exact"},{"name":"UniProtKB:P10651, 2-136, Lys-37, MOD:00663","type":"exact"},{"name":"hht3/Me(K36)","type":"exact"}],"termid":"PR:000085719"}


id: PBO:0013779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-mannosidase Ams1 (predicted)","termid":"PBO:0013779"}


id: GO:0021503
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenesis of the neural fold elevations that results in the movement of the tips of the elevations towards each other in order to fuse.","definition_xrefs":["GOC:cls","GOC:dph","GOC:jid","PMID:15806586","GO_REF:0000021","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"is_a","term_name":"morphogenesis of an epithelial fold","termid":"GO:0060571"},{"relation_name":"part_of","term_name":"neural fold formation","termid":"GO:0001842"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural fold bending","termid":"GO:0021503"}


id: GO:0021504
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of the median and lateral hinge points in the neural folds. These are created by apical constriction and basal expansion of the underlying neural cells. The median hinge point extends for the entire length of the neural tube, and the lateral hinge points do not form in the spinal cord region of the neural tube.","definition_xrefs":["GOC:jid","PMID:13679871","PMID:15806586","GOC:dgh","GO_REF:0000021","GOC:dph","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"neural fold bending","termid":"GO:0021503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural fold hinge point formation","synonyms":[{"name":"neural fold furrowing","type":"narrow"}],"termid":"GO:0021504"}


id: SO:0001333
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Peroxywybutosine is a modified guanosine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_guanosine","termid":"SO:0001276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxywybutosine","secondary_identifiers":["RNAMOD:038"],"synonyms":[{"name":"o2yW","type":"exact"}],"termid":"SO:0001333"}


id: PBO:0036490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GET complex (ER membrane insertion) subunit Get1 (predicted)","termid":"PBO:0036490"}


id: GO:0004525
data:
  {"annotated_genes":["SJAG_01463","SJAG_02156","SJAG_03689","SJAG_04527","SJAG_04019"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72562,98241,99506,105894,112062],"is_not":false,"summary":null,"term":"GO:0004525"}]},"cv_name":"molecular_function","definition":"Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt.","definition_xrefs":["PMID:11157775","PMID:15242644"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA endonuclease activity, producing 5'-phosphomonoesters","termid":"GO:0016891"},{"relation_name":"is_a","term_name":"double-stranded RNA-specific ribonuclease activity","termid":"GO:0032296"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01463":null,"SJAG_02156":null,"SJAG_03689":null,"SJAG_04019":null,"SJAG_04527":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0140098","GO:0016788","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"ribonuclease III activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-203862","MetaCyc:3.1.26.3-RXN","Reactome:R-HSA-426464","Reactome:R-HSA-9708292","Reactome:R-HSA-203893","EC:3.1.26.3","Reactome:R-HSA-9820840","Reactome:R-HSA-9708408"],"synonyms":[{"name":"RNase III activity","type":"related"},{"name":"pre-mRNA 3'-end processing endonuclease","type":"narrow"},{"name":"ribonuclease 3 activity","type":"related"}],"termid":"GO:0004525","terms_by_termid":{"GO:0004525":null}}


id: GO:0034177
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of toll-like receptor 12 signaling pathway.","definition_xrefs":["PMID:17328678","GOC:add","PMID:16551253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of toll-like receptor 12 signaling pathway","termid":"GO:0034175"},{"relation_name":"is_a","term_name":"positive regulation of pattern recognition receptor signaling pathway","termid":"GO:0062208"},{"relation_name":"is_a","term_name":"positive regulation of intracellular signal transduction","termid":"GO:1902533"},{"relation_name":"positively_regulates","term_name":"toll-like receptor 12 signaling pathway","termid":"GO:0034174"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of toll-like receptor 12 signaling pathway","synonyms":[{"name":"positive regulation of TLR12 signaling pathway","type":"exact"},{"name":"positive regulation of toll-like receptor 12 signalling pathway","type":"exact"}],"termid":"GO:0034177"}


id: GO:0050152
data:
  {"annotated_genes":["SJAG_02276"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91011],"is_not":false,"summary":null,"term":"GO:0050152"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a monoamide of a dicarboxylic acid + H2O = a dicarboxylate + NH3.","definition_xrefs":["EC:3.5.1.3","MetaCyc:OMEGA-AMIDASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02276":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0016810","GO:0003674"],"is_obsolete":false,"name":"omega-amidase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:11716"],"synonyms":[{"name":"alpha-keto acid-omega-amidase activity","type":"related"},{"name":"omega-amidodicarboxylate amidohydrolase activity","type":"related"},{"name":"w-amidase activity","type":"exact"}],"termid":"GO:0050152","terms_by_termid":{"GO:0050152":null}}


id: GO:1900282
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellobiose catabolic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of carbohydrate catabolic process","termid":"GO:0043470"},{"relation_name":"is_a","term_name":"regulation of cellobiose metabolic process","termid":"GO:2000930"},{"relation_name":"regulates","term_name":"cellobiose catabolic process","termid":"GO:2000892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"regulation of cellobiose catabolic process","synonyms":[{"name":"regulation of cellobiose catabolism","type":"exact"}],"termid":"GO:1900282"}


id: PBO:0085664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in nonstop mRNA decay; predicted to be palmitoylated","termid":"PBO:0085664"}


id: GO:0010933
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate, or extent of B cell tolerance induction.","definition_xrefs":["GOC:tb","GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of tolerance induction","termid":"GO:0002645"},{"relation_name":"is_a","term_name":"regulation of macrophage tolerance induction","termid":"GO:0010932"},{"relation_name":"positively_regulates","term_name":"macrophage tolerance induction","termid":"GO:0010931"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of macrophage tolerance induction","termid":"GO:0010933"}


id: PBO:0051739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrator complex subunit 6 pseudogene 1","termid":"PBO:0051739"}


id: PBO:0064944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRC2 and DDX5 associated lncRNA","termid":"PBO:0064944"}


id: PBO:0085492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Prolyl-tRNA synthetase; N-terminal domain shows weak homology to prokaryotic posttransfer editing domain, but does not possess posttransfer editing activity; may interact with ribosomes, based on co-purification experiments","termid":"PBO:0085492"}


id: GO:0055051
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex for the transport of metabolites out of the cell, consisting of 4 domains: two ATP-binding domains and two membrane spanning domains. In some cases, all 4 domains are contained on 1 polypeptide, while in others one ATP-binding domain and one membrane spanning domain are together on one polypeptide in what is called a half transporter. Two half-transporters come together to form a functional transporter. Transport of the substrate across the membrane is driven by the hydrolysis of ATP.","definition_xrefs":["GOC:mtg_sensu","GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-binding cassette (ABC) transporter complex","termid":"GO:0043190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"ATP-binding cassette (ABC) transporter complex, integrated substrate binding","termid":"GO:0055051"}


id: GO:0019383
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of (+)-camphor, a bicyclic monoterpene ketone.","definition_xrefs":["UM-BBD_pathwayID:cam"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoterpenoid catabolic process","termid":"GO:0016100"},{"relation_name":"is_a","term_name":"(+)-camphor metabolic process","termid":"GO:0018882"},{"relation_name":"is_a","term_name":"ketone catabolic process","termid":"GO:0042182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044248","GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"(+)-camphor catabolic process","secondary_identifiers":["MetaCyc:P601-PWY"],"synonyms":[{"name":"(+)-camphor breakdown","type":"exact"},{"name":"(+)-camphor catabolism","type":"exact"},{"name":"(+)-camphor degradation","type":"exact"}],"termid":"GO:0019383"}


id: MOD:00018
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to an L-histidine.","definition_xrefs":["PubMed:2722967","PubMed:5460889","PubMed:6692818","PubMed:6129252","PubMed:6876174","DeltaMass:0","PubMed:14342316","PubMed:512","RESID:AA0009","ChEBI:29979"],"direct_ancestors":[{"relation_name":"is_a","term_name":"natural, standard, encoded residue","termid":"MOD:01441"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-histidine residue","synonyms":[{"name":"(2S)-2-amino-3-(1H-imidazol-4-yl)propanoic acid","type":"exact"},{"name":"(2S)-2-amino-3-(1H-imidazol-5-yl)propanoic acid [tautomer]","type":"exact"},{"name":"2-azanyl-3-(1H-imidazol-4-yl)propanoic acid","type":"exact"},{"name":"2-azanyl-3-(1H-imidazol-5-yl)propanoic acid [tautomer]","type":"exact"},{"name":"4-(2-amino-2-carboxyethyl)imidazole","type":"exact"},{"name":"His","type":"exact"},{"name":"L-histidine","type":"exact"},{"name":"alpha-amino-beta-(4-imidazole)propionic acid","type":"exact"},{"name":"glyoxaline-5-alanine","type":"exact"}],"termid":"MOD:00018"}


id: PBO:0062531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily X member 1 pseudogene","termid":"PBO:0062531"}


id: PBO:0078337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (CTC) 3-1","termid":"PBO:0078337"}


id: PBO:0086912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative Y' element ATP-dependent helicase; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YML133C contains an intron","termid":"PBO:0086912"}


id: PBO:0029668
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actin_cable_morphology","termid":"PBO:0029668"}


id: GO:0071917
data:
  {"annotated_genes":["SJAG_01960","SJAG_00276","SJAG_04406"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[89158,89394,108322],"is_not":false,"summary":null,"term":"GO:0071917"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a triose phosphate from one side of a membrane to the other.","definition_xrefs":["GOC:mah","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organophosphate ester transmembrane transporter activity","termid":"GO:0015605"},{"relation_name":"is_a","term_name":"carbohydrate derivative transmembrane transporter activity","termid":"GO:1901505"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00276":null,"SJAG_01960":null,"SJAG_04406":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"triose-phosphate transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0071917","terms_by_termid":{"GO:0071917":null}}


id: PBO:0050882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IDI2 antisense RNA 1","termid":"PBO:0050882"}


id: PBO:0068212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 519","termid":"PBO:0068212"}


id: PBO:0065748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyrroline-5-carboxylate reductase 3","termid":"PBO:0065748"}


id: PBO:0073874
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 10 member 2","termid":"PBO:0073874"}


id: GO:1904611
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 3,3',4,4',5-pentachlorobiphenyl stimulus.","definition_xrefs":["GOC:TermGenie","GO_REF:0000071","PMID:23196670"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"response to 3,3',4,4',5-pentachlorobiphenyl","termid":"GO:1904610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to 3,3',4,4',5-pentachlorobiphenyl","synonyms":[{"name":"cellular response to PCB 126","type":"exact"}],"termid":"GO:1904611"}


id: PBO:0070470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L5 pseudogene 5","termid":"PBO:0070470"}


id: PBO:0038497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily C member 6 pseudogene 1","termid":"PBO:0038497"}


id: GO:0002855
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of natural killer cell mediated immune response to a tumor cell.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of natural killer cell mediated immunity","termid":"GO:0002715"},{"relation_name":"is_a","term_name":"regulation of immune response to tumor cell","termid":"GO:0002837"},{"relation_name":"regulates","term_name":"natural killer cell mediated immune response to tumor cell","termid":"GO:0002423"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of natural killer cell mediated immune response to tumor cell","termid":"GO:0002855"}


id: SO:0001780
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variant found within only speficic populations.","direct_ancestors":[{"relation_name":"is_a","term_name":"variant_origin","termid":"SO:0001762"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"population_specific_variant","synonyms":[{"name":"population specific variant","type":"exact"}],"termid":"SO:0001780"}


id: PBO:0112981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-phosphoglycerate dehydrogenase and alpha-ketoglutarate reductase; 3PG dehydrogenase that catalyzes the first step in serine and glycine biosynthesis; alpha-ketoglutarate reductase, converting alpha-ketoglutarate to D-2-hydroxyglutarate (D-2HG); directly phosphorylated by TORC1 in a Pib2-dependent manner; localizes to the cytoplasm; ER3 has a paralog, SER33, that arose from the whole genome duplication","termid":"PBO:0112981"}


id: PBO:0113106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dual-specificity kinase; required for SPB duplication and spindle checkpoint function in mitosis and meiosis; contributes to bi-orientation, promoting formation of force-generating kinetochore-microtubule attachments in meiosis I; autophosphorylation required for function; substrates include SPB proteins (Spc42p, Spc110p, Spc98p), mitotic exit network protein Mob1p, kinetochore protein Cnn1p, and checkpoint protein Mad1p; substrate of APCC(Cdh1); detected in peroxisomes; similar to human Mps1p","termid":"PBO:0113106"}


id: PR:Q09184
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A proliferation-associated protein 2G4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00642","PANTHER:PTHR10804:SF11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"curved DNA-binding protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23H4.09","secondary_identifiers":["UniProtKB:Q09184"],"synonyms":[{"name":"42 kDa protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PA2G4","type":"exact"}],"termid":"PR:Q09184"}


id: PBO:0012049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sister chromatid cohesion protein/DNA polymerase eta Eso1 fusion protein","termid":"PBO:0012049"}


id: PBO:0030627
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-loss_of_viability_upon_nitrogen_starvation","termid":"PBO:0030627"}


id: PR:Q9Y7Y2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A pre-mRNA-splicing factor SLU7 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12942:SF2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-splicing factor slu7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC365.05c","secondary_identifiers":["UniProtKB:Q9Y7Y2"],"synonyms":[{"name":"SPBC365.05c","type":"related"},{"name":"Spom972h-SLU7","type":"exact"}],"termid":"PR:Q9Y7Y2"}


id: PBO:0073300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 14 pseudogene 22","termid":"PBO:0073300"}


id: GO:1902186
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of viral release from host cell.","definition_xrefs":["GOC:TermGenie","PMID:18305167"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of viral release from host cell (obsolete GO:1902186)","synonyms":[{"name":"regulation of release of virus from host","type":"exact"},{"name":"regulation of viral exit","type":"exact"},{"name":"regulation of viral release","type":"exact"},{"name":"regulation of viral shedding","type":"exact"}],"termid":"GO:1902186"}


id: PR:O60054
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC56F2.03 gene.","definition_xrefs":["UniProtKB:O60054","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin-like protein arp10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC56F2.03","synonyms":[{"name":"Spom972h-SPBC56F2.03","type":"exact"}],"termid":"PR:O60054"}


id: GO:0018585
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: fluorene + 2 H+ + 2 e- + O2 = H2O + 9-fluorenol.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete fluorene oxygenase activity (obsolete GO:0018585)","termid":"GO:0018585"}


id: PBO:0074146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 35 member C2","termid":"PBO:0074146"}


id: PBO:0044185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTP synthase 1","termid":"PBO:0044185"}


id: GO:0102223
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4 H+ + 15-cis-4,4'-diapophytoene + 4 FAD = 4,4'-diapolycopene + 4 FADH2. This reaction consists of four successive dehydrogenations that lead to the introduction of three double bonds into 4,4'-diapophytoene (dehydrosqualene), with 4,4'-diapophytofluene, 4,4'-diapo-zeta-carotene and 4,4'-diapolycopene as intermediates, and 4,4'-diapolycopene as the end product.","definition_xrefs":["RHEA:31391","PMID:8002598"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor","termid":"GO:0052890"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"4,4'-diapophytoene desaturase (4,4'-diaponeurosporene-forming)","secondary_identifiers":["GO:0102225","GO:0102961","EC:1.3.8.2","MetaCyc:RXN-12224","GO:0102962"],"synonyms":[{"name":"4,4'-diapo-zeta-carotene desaturase activity","type":"narrow"},{"name":"4,4'-diaponeurosporene desaturase activity","type":"narrow"},{"name":"4,4'-diapophytoene desaturase activity","type":"broad"},{"name":"4,4'-diapophytofluene desaturase activity","type":"narrow"}],"termid":"GO:0102223"}


id: PR:O74742
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A folylpolyglutamate synthase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11136:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"folylpolyglutamate synthase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1709.17","secondary_identifiers":["UniProtKB:O74742"],"synonyms":[{"name":"FPGS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPBC1709.17","type":"related"},{"name":"Spom972h-FPGS","type":"exact"},{"name":"folylpoly-gamma-glutamate synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tetrahydrofolate synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tetrahydrofolylpolyglutamate synthase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74742"}


id: GO:0072311
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a glomerular epithelial cell. Glomerular epithelial cells are specialized epithelial cells that form part of the glomerulus; there are two types, glomerular parietal epithelial cells and glomerular visceral epithelial cells.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation involved in kidney development","termid":"GO:0035850"},{"relation_name":"part_of","term_name":"glomerular epithelium development","termid":"GO:0072010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glomerular epithelial cell differentiation","termid":"GO:0072311"}


id: GO:0003314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the heart rudiment are generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelium","termid":"GO:0002009"},{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"heart rudiment development","termid":"GO:0003313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"heart rudiment morphogenesis","synonyms":[{"name":"heart cone morphogenesis","type":"exact"}],"termid":"GO:0003314"}


id: PBO:0052655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 23","termid":"PBO:0052655"}


id: GO:0042427
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serotonin metabolic process","termid":"GO:0042428"},{"relation_name":"is_a","term_name":"indole-containing compound biosynthetic process","termid":"GO:0042435"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"primary amino compound biosynthetic process","termid":"GO:1901162"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"serotonin biosynthetic process","secondary_identifiers":["Wikipedia:Serotonin"],"synonyms":[{"name":"serotonin formation","type":"exact"},{"name":"serotonin synthesis","type":"exact"},{"name":"serotonin anabolism","type":"exact"},{"name":"serotonin biosynthesis","type":"exact"}],"termid":"GO:0042427"}


id: GO:0046588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of calcium-dependent cell-cell adhesion.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell-cell adhesion","termid":"GO:0022408"},{"relation_name":"is_a","term_name":"regulation of calcium-dependent cell-cell adhesion","termid":"GO:0046586"},{"relation_name":"negatively_regulates","term_name":"calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules","termid":"GO:0016339"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"negatively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of calcium-dependent cell-cell adhesion","synonyms":[{"name":"down regulation of calcium-dependent cell-cell adhesion","type":"exact"},{"name":"down-regulation of calcium-dependent cell-cell adhesion","type":"exact"},{"name":"downregulation of calcium-dependent cell-cell adhesion","type":"exact"},{"name":"inhibition of calcium-dependent cell-cell adhesion","type":"narrow"}],"termid":"GO:0046588"}


id: PBO:0053518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 508","termid":"PBO:0053518"}


id: GO:0004175
data:
  {"annotated_genes":["SJAG_02397","SJAG_02542","SJAG_01321","SJAG_04541","SJAG_03261","SJAG_02502","SJAG_03420","SJAG_01838","SJAG_01430","SJAG_00984","SJAG_03393","SJAG_03151","SJAG_05351","SJAG_04306","SJAG_03121","SJAG_04641","SJAG_04514","SJAG_01816","SJAG_01285","SJAG_00784","SJAG_04928","SJAG_00109","SJAG_01004","SJAG_00406","SJAG_02214","SJAG_04583","SJAG_04357","SJAG_03292","SJAG_00778","SJAG_05316","SJAG_02562","SJAG_04229","SJAG_00808","SJAG_03672","SJAG_01283","SJAG_04785","SJAG_03258","SJAG_04398","SJAG_03396","SJAG_00737","SJAG_03763","SJAG_00730","SJAG_02432","SJAG_00573","SJAG_16454","SJAG_02260","SJAG_01968","SJAG_01136","SJAG_00135","SJAG_03648","SJAG_04969","SJAG_00128","SJAG_04888","SJAG_01179","SJAG_02809","SJAG_03686","SJAG_01014","SJAG_00254","SJAG_04533","SJAG_03910","SJAG_05286"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84583,89231,89403,92294,92528,93697,95816,97946,107213,107457,107824,110706,111640,112021,113647,113908],"is_not":false,"summary":null,"term":"GO:0004175"},{"annotations":[90778],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042500"},{"annotations":[59775,78686,90910,90911,90912,94465,111670],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004190"},{"annotations":[113646,111902,87671],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004197"},{"annotations":[83515,110008],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003923"},{"annotations":[97146,93406,85633,88355,109255,112732,107055,105246,98274,93397,101633,114799,94376,97105,86311,104131],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004222"},{"annotations":[93700,99141,100884,114505,90222,87659,105247,83556,89326,89232,99890,97351,104132,99883,109476],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004252"},{"annotations":[86332,102176],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070139"},{"annotations":[106777,90058,96299,93768],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004298"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.","direct_ancestors":[{"relation_name":"is_a","term_name":"peptidase 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id: PATO:0000732
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000732 body tone value (obsolete PATO:0000732)","termid":"PATO:0000732"}


id: PBO:0076362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SZT2 subunit of KICSTOR complex","termid":"PBO:0076362"}


id: PBO:0079948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP2 antisense RNA 1","termid":"PBO:0079948"}


id: PBO:0085314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphatidylglycerolphosphate synthase; catalyzes the synthesis of phosphatidylglycerolphosphate from CDP-diacylglycerol and sn-glycerol 3-phosphate in the first committed and rate-limiting step of cardiolipin biosynthesis","termid":"PBO:0085314"}


id: GO:2001169
data:
  {"annotated_genes":["SJAG_04422"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114067],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905706"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of ATP biosynthetic process.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of purine nucleotide biosynthetic process","termid":"GO:1900371"},{"relation_name":"is_a","term_name":"regulation of ATP metabolic process","termid":"GO:1903578"},{"relation_name":"regulates","term_name":"ATP biosynthetic process","termid":"GO:0006754"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04422":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"regulation of ATP biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of ATP anabolism","type":"exact"},{"name":"regulation of ATP biosynthesis","type":"exact"},{"name":"regulation of ATP formation","type":"exact"},{"name":"regulation of ATP regeneration","type":"related"},{"name":"regulation of ATP synthesis","type":"exact"}],"termid":"GO:2001169","terms_by_termid":{"GO:1905706":null}}


id: GO:0048546
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the digestive tract are generated and organized. The digestive tract is the anatomical structure through which food passes and is processed.","definition_xrefs":["GOC:go_curators","PMID:12618131","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube morphogenesis","termid":"GO:0035239"},{"relation_name":"part_of","term_name":"digestive tract development","termid":"GO:0048565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"digestive tract morphogenesis","secondary_identifiers":["GO:0048547"],"synonyms":[{"name":"alimentary canal morphogenesis","type":"exact"},{"name":"digestive tube morphogenesis","type":"exact"},{"name":"gastrointestinal tract morphogenesis","type":"exact"},{"name":"gut morphogenesis","type":"broad"},{"name":"intestinal morphogenesis","type":"narrow"}],"termid":"GO:0048546"}


id: GO:0086048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which bundle of His cardiac muscle cell membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane depolarization during cardiac muscle cell action potential","termid":"GO:0086012"},{"relation_name":"part_of","term_name":"bundle of His cell action potential","termid":"GO:0086043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"membrane depolarization during bundle of His cell action potential","synonyms":[{"name":"membrane depolarization during bundle of His cardiac muscle cell action potential","type":"exact"}],"termid":"GO:0086048"}


id: FYPO:0004748
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone exchange occurs to a lower extent than normal in regions of pericentric heterochromatin. Histone exchange is replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits.","definition_xrefs":["PMID:24095277","GO:0043486","GO:0005721","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin remodeling","termid":"FYPO:0006356"},{"relation_name":"is_a","term_name":"decreased protein exchange at pericentric heterochromatin","termid":"FYPO:0006359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000641"}],"interesting_parent_ids":["FYPO:0000641","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"decreased histone exchange at pericentric heterochromatin","synonyms":[{"name":"decreased histone exchange at centromeric heterochromatin","type":"exact"},{"name":"decreased histone exchange at dh repeat","type":"narrow"},{"name":"decreased histone exchange at pericentric heterochromatin during mitotic cell cycle","type":"related"},{"name":"decreased histone exchange at pericentric heterochromatin during vegetative growth","type":"exact"},{"name":"reduced histone exchange at pericentric heterochromatin","type":"exact"}],"termid":"FYPO:0004748"}


id: PBO:0074302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLX1 homolog B, structure-specific endonuclease subunit","termid":"PBO:0074302"}


id: PBO:0058763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6887","termid":"PBO:0058763"}


id: GO:1901163
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of trophoblast cell migration.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell migration","termid":"GO:0030334"},{"relation_name":"regulates","term_name":"trophoblast cell migration","termid":"GO:0061450"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of trophoblast cell migration","termid":"GO:1901163"}


id: PBO:0056887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial calcium uptake 2","termid":"PBO:0056887"}


id: GO:0120513
data:
  {"annotated_genes":["SJAG_01058","SJAG_04085"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[101290,105755],"is_not":false,"summary":null,"term":"GO:0120513"}]},"cv_name":"cellular_component","definition":"A protein complex capable of catalysing the transfer of the 3-amino-3-carboxypropyl group from S-adenosyl-L-methionine (SAM) to the histidine residue of translation elongation factor 2 (EF2), which is the first step in the biosynthesis of diphthamide. The complex is a Dph2 homodimer in archaea and a Dph1-Dph2 heterodimer in eukaryotes.","definition_xrefs":["PMID:31463593","PMID:24422557","GOC:sjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01058":null,"SJAG_04085":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"2-(3-amino-3-carboxypropyl)histidine synthase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Dph1-Dph2 complex","type":"exact"}],"termid":"GO:0120513","terms_by_termid":{"GO:0120513":null}}


id: PBO:0091640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small non-coding RNA, poly(A)-bearing","termid":"PBO:0091640"}


id: GO:0050288
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-sorbose + A = 5-dehydro-D-fructose + AH(2).","definition_xrefs":["EC:1.1.99.12","RHEA:14713"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"sorbose dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R01696","MetaCyc:SORBOSE-DEHYDROGENASE-RXN"],"synonyms":[{"name":"L-sorbose:(acceptor) 5-oxidoreductase activity","type":"related"},{"name":"L-sorbose:acceptor 5-oxidoreductase activity","type":"related"}],"termid":"GO:0050288"}


id: PBO:0001869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-specific cysteine protease, OTU family, Otu1","termid":"PBO:0001869"}


id: GO:0010569
data:
  {"annotated_genes":["SJAG_01205"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105368],"is_not":false,"summary":null,"term":"GO:0010569"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences.","definition_xrefs":["GOC:dph","GOC:tb","GOC:jp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA recombination","termid":"GO:0000018"},{"relation_name":"is_a","term_name":"regulation of double-strand break repair","termid":"GO:2000779"},{"relation_name":"regulates","term_name":"double-strand break repair via homologous recombination","termid":"GO:0000724"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01205":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006310"}],"interesting_parent_ids":["GO:0006259","GO:0008150","GO:0006281","GO:0006310"],"is_obsolete":false,"name":"regulation of double-strand break repair via homologous recombination","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010569","terms_by_termid":{"GO:0010569":null}}


id: PBO:0074582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 2A","termid":"PBO:0074582"}


id: PBO:0077311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 50A","termid":"PBO:0077311"}


id: PBO:0013838
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PhosphoPantothenate-Cysteine","termid":"PBO:0013838"}


id: FYPO:0009004
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which horsetail movement occurs without nuclei fusing. This can happen with both nuclei having congressed and their SPBs having coalesced, but nuclei having failed to fuse, see PMID:36650056.","definition_xrefs":["PMID:36650056","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal horsetail movement","termid":"FYPO:0000197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0000002","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"horsetail movement with unfused nuclei","synonyms":[{"name":"horsetail movement with two nuclei","type":"exact"},{"name":"twin horsetail nuclei","type":"narrow"}],"termid":"FYPO:0009004"}


id: GO:0021668
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to creating the structural organization of rhombomere 6. This process pertains to the physical shaping of a rudimentary structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order.","definition_xrefs":["GO_REF:0000021","GOC:dgh","GOC:cls","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhombomere structural organization","termid":"GO:0021595"},{"relation_name":"part_of","term_name":"rhombomere 6 morphogenesis","termid":"GO:0021667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rhombomere 6 structural organization","synonyms":[{"name":"rhombomere 6 structural organisation","type":"exact"}],"termid":"GO:0021668"}


id: PBO:0053742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 968","termid":"PBO:0053742"}


id: GO:0010529
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that decreases the frequency, rate or extent of transposition. Transposition results in the movement of discrete segments of DNA between nonhomologous sites.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transposition (obsolete GO:0010529)","termid":"GO:0010529"}


id: PBO:0087610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the COMPASS (Set1C) complex; COMPASS methylates lysine 4 of histone H3 and is required in chromatin silencing at telomeres; contains a Dpy-30 domain that mediates interaction with Bre2p; similar to C. elegans and human DPY-30","termid":"PBO:0087610"}


id: GO:0061576
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that catalyzes the reaction acyl-CoA + sphingosine = CoA + N-acylsphingosine. In S. cerevisiae it contains three subunits: lag1, lac1 and lip1.","definition_xrefs":["PMID:15692566","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"acyl-CoA ceramide synthase complex","termid":"GO:0061576"}


id: PBO:0069277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 533, pseudogene","termid":"PBO:0069277"}


id: GO:0002520
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of an organismal system whose objective is to provide calibrated responses by an organism to a potential internal or invasive threat, over time, from its formation to the mature structure. A system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process.","definition_xrefs":["GOC:dph","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system process","termid":"GO:0002376"},{"relation_name":"is_a","term_name":"system development","termid":"GO:0048731"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"immune system development","termid":"GO:0002520"}


id: PBO:0001460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase","termid":"PBO:0001460"}


id: PR:Q12705
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ppb1 gene.","definition_xrefs":["UniProtKB:Q12705","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein phosphatase 2B catalytic subunit (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP4H10.04","synonyms":[{"name":"Spom972h-ppb1","type":"exact"}],"termid":"PR:Q12705"}


id: PBO:0110268
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase II complex subunit Rpb3","termid":"PBO:0110268"}


id: FYPO:0009021
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cell growth is decreased relative to normal in a medium containing L-cysteine as the nitrogen source.","definition_xrefs":["PomBase:mlr","PMID:34984977"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased vegetative cell population growth","termid":"FYPO:0001355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0005447","FYPO:0002058","FYPO:0002060","FYPO:0001985","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"decreased cell population growth on cysteine nitrogen source","synonyms":[{"name":"decreased growth on cysteine nitrogen source","type":"broad"},{"name":"decreased vegetative cell growth on cysteine nitrogen source","type":"exact"},{"name":"growth defect, slow growth with cysteine nitrogen source","type":"related"},{"name":"reduced cell growth on cysteine nitrogen source","type":"related"},{"name":"slow cell growth on cysteine nitrogen source","type":"narrow"}],"termid":"FYPO:0009021"}


id: PBO:0003358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone deacetylase (class I) Clr6","termid":"PBO:0003358"}


id: GO:0160105
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: adenosine(22) in tRNA + S-adenosyl-L-methionine = H+ + N(1)-methyladenosine(22) in tRNA + S-adenosyl-L-homocysteine.","definition_xrefs":["EC:2.1.1.217"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA (adenine) methyltransferase activity","termid":"GO:0016426"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0140101","GO:0003674","GO:0140098","GO:0016741"],"is_obsolete":false,"name":"tRNA (adenine(22)-N1)-methyltransferase activity","secondary_identifiers":["RHEA:43144"],"synonyms":[{"name":"tRNA (adenine(22)-N(1))-methyltransferase activity","type":"exact"},{"name":"tRNA (adenosine(22)-N(1))-methyltransferase activity","type":"exact"}],"termid":"GO:0160105"}


id: GO:1903291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of ATP catabolic process.","definition_xrefs":["GO_REF:0000058","PMID:10636900","GOC:BHF","GOC:rl","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of ATP catabolic process (obsolete GO:1903291)","synonyms":[{"name":"activation of ATP breakdown","type":"narrow"},{"name":"activation of ATP catabolic process","type":"narrow"},{"name":"activation of ATP catabolism","type":"narrow"},{"name":"activation of ATP degradation","type":"narrow"},{"name":"activation of ATP hydrolysis","type":"narrow"},{"name":"positive regulation of ATP breakdown","type":"exact"},{"name":"positive regulation of ATP catabolism","type":"exact"},{"name":"positive regulation of ATP degradation","type":"exact"},{"name":"positive regulation of ATP hydrolysis","type":"narrow"},{"name":"up regulation of ATP breakdown","type":"exact"},{"name":"up regulation of ATP catabolic process","type":"exact"},{"name":"up regulation of ATP catabolism","type":"exact"},{"name":"up regulation of ATP degradation","type":"exact"},{"name":"up regulation of ATP hydrolysis","type":"narrow"},{"name":"up-regulation of ATP breakdown","type":"exact"},{"name":"up-regulation of ATP catabolic process","type":"exact"},{"name":"up-regulation of ATP catabolism","type":"exact"},{"name":"up-regulation of ATP degradation","type":"exact"},{"name":"up-regulation of ATP hydrolysis","type":"narrow"},{"name":"upregulation of ATP breakdown","type":"exact"},{"name":"upregulation of ATP catabolic process","type":"exact"},{"name":"upregulation of ATP catabolism","type":"exact"},{"name":"upregulation of ATP degradation","type":"exact"},{"name":"upregulation of ATP hydrolysis","type":"narrow"}],"termid":"GO:1903291"}


id: GO:1905193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of chloroplast fission.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:26862170"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of organelle organization","termid":"GO:0010639"},{"relation_name":"is_a","term_name":"regulation of chloroplast fission","termid":"GO:1905192"},{"relation_name":"negatively_regulates","term_name":"chloroplast fission","termid":"GO:0010020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of chloroplast fission","synonyms":[{"name":"down regulation of chloroplast division","type":"exact"},{"name":"down regulation of chloroplast fission","type":"exact"},{"name":"down-regulation of chloroplast division","type":"exact"},{"name":"down-regulation of chloroplast fission","type":"exact"},{"name":"downregulation of chloroplast division","type":"exact"},{"name":"downregulation of chloroplast fission","type":"exact"},{"name":"inhibition of chloroplast division","type":"narrow"},{"name":"inhibition of chloroplast fission","type":"narrow"},{"name":"negative regulation of chloroplast division","type":"exact"}],"termid":"GO:1905193"}


id: PBO:0064983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich acidic protein 1","termid":"PBO:0064983"}


id: GO:0008697
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-dehydro-4-deoxy-D-glucuronate = 3-deoxy-D-glycero-2,5-hexodiulosonate.","definition_xrefs":["EC:5.3.1.17","RHEA:23896"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, interconverting aldoses and ketoses","termid":"GO:0016861"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity","secondary_identifiers":["MetaCyc:5.3.1.17-RXN","KEGG_REACTION:R04383"],"synonyms":[{"name":"4-deoxy-L-threo-5-hexosulose-uronate aldose-ketose-isomerase activity","type":"related"},{"name":"4-deoxy-L-threo-5-hexulose uronate isomerase activity","type":"related"},{"name":"5-keto-4-deoxyuronate isomerase activity","type":"related"}],"termid":"GO:0008697"}


id: PBO:0052102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium voltage-gated channel subfamily A member 5","termid":"PBO:0052102"}


id: PBO:0045633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 45 (pseudogene)","termid":"PBO:0045633"}


id: PR:000050524
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DASH complex subunit dam1 (Schizosaccharomyces pombe) that has been phosphorylated at the position equivalent to Ser-143 of the amino acid sequence represented by UniProtKB:Q9HDZ6. Example: UniProtKB:Q9HDZ6, Ser-143, MOD:00046.","definition_xrefs":["PMID:22375062","PomBase:VW","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DASH complex subunit dam1 (Schizosaccharomyces pombe)","termid":"PR:000050523"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dam1/Phos(S143)","pombase_gene_id":"SPAC589.08c","synonyms":[{"name":"PomBase_original_PRO_term_name: DASH complex subunit dam1 phosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-dam1/Phos:1","type":"exact"},{"name":"UniProtKB:Q9HDZ6, Ser-143, MOD:00046","type":"narrow"},{"name":"dam1/Phos(S143)","type":"exact"}],"termid":"PR:000050524"}


id: PBO:0111880
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein WIPI family","termid":"PBO:0111880"}


id: FYPO:0001201
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to calcium ion starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitive to stress during vegetative growth","termid":"FYPO:0000304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to calcium ion starvation","synonyms":[{"name":"decreased growth during cellular response to calcium ion starvation","type":"exact"},{"name":"decreased vegetative cell population growth during cellular response to calcium ion starvation","type":"exact"},{"name":"hypersensitive to calcium ion starvation","type":"exact"},{"name":"reduced growth in low calcium","type":"related"},{"name":"sensitive to calcium ion depletion","type":"exact"},{"name":"sensitive to calcium ion deprivation","type":"exact"},{"name":"sensitive to calcium ion starvation during mitotic cell cycle","type":"related"},{"name":"sensitive to calcium ion starvation during vegetative growth","type":"exact"},{"name":"sensitive to calcium starvation","type":"exact"}],"termid":"FYPO:0001201"}


id: PBO:0070223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 156 pseudogene","termid":"PBO:0070223"}


id: PBO:0085455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Potassium transporter that mediates K+ influx; activates high-affinity Ca2+ influx system (HACS) during mating pheromone response; expression up-regulated in response to alpha factor; localized to sites of polarized growth; member of a fungal-specific gene family; potential Cdc28p substrate; KCH1 has a paralog, PRM6, that arose from the whole genome duplication","termid":"PBO:0085455"}


id: GO:0061206
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the mesonephros are generated and organized.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney morphogenesis","termid":"GO:0060993"},{"relation_name":"part_of","term_name":"mesonephros development","termid":"GO:0001823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephros morphogenesis","synonyms":[{"name":"Wolffian body morphogenesis","type":"exact"}],"termid":"GO:0061206"}


id: PBO:0041136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTB domain containing 19","termid":"PBO:0041136"}


id: GO:0016900
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces a disulfide molecule.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete oxidoreductase activity, acting on the CH-OH group of donors, disulfide as acceptor (obsolete GO:0016900)","synonyms":[{"name":"oxidoreductase activity, acting on the CH-OH group of donors, disulphide as acceptor","type":"exact"}],"termid":"GO:0016900"}


id: PBO:0068206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 513","termid":"PBO:0068206"}


id: PBO:0064140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase N1","termid":"PBO:0064140"}


id: GO:0044516
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that activates or increases the frequency, rate or extent of the activity of a glucagon-like peptide receptor 1 in a second organism.","definition_xrefs":["GOC:jl","GOC:fj","PMID:8405712"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of glucagon-like peptide receptor 1 activity in another organism (obsolete GO:0044516)","synonyms":[{"name":"positive regulation of glucagon-like peptide receptor 1 activity in other organism","type":"exact"}],"termid":"GO:0044516"}


id: PBO:0076746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tectonic family member 1","termid":"PBO:0076746"}


id: PBO:0066362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RD3 regulator of GUCY2D","termid":"PBO:0066362"}


id: PBO:0053785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1036","termid":"PBO:0053785"}


id: PATO:0000654
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000654 alcochol value (obsolete PATO:0000654)","termid":"PATO:0000654"}


id: GO:0051304
data:
  {"annotated_genes":["SJAG_03327","SJAG_04259","SJAG_02380","SJAG_01679","SJAG_03681","SJAG_04699","SJAG_04999","SJAG_04884","SJAG_02542","SJAG_02104","SJAG_03353","SJAG_01297","SJAG_01082","SJAG_04661","SJAG_00883","SJAG_05236","SJAG_02336","SJAG_03048","SJAG_01837","SJAG_01956","SJAG_04457","SJAG_03350","SJAG_01805","SJAG_04126","SJAG_00146","SJAG_00460","SJAG_05329","SJAG_00666","SJAG_04573","SJAG_02498","SJAG_03351","SJAG_02186","SJAG_01515","SJAG_02169","SJAG_04968","SJAG_01330","SJAG_02451","SJAG_00145","SJAG_03126"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110333,103284,86782,99958,95647,104306,108019,109845,111967],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1902426"},{"annotations":[102362,110559],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1905318"},{"annotations":[113643],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051307"},{"annotations":[89938,106237],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051755"},{"annotations":[97854,112745,102363],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0033316"},{"annotations":[86409,96854,97895,92664,95668,91228,87803,95663,113645],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051306"},{"annotations":[111623,109849,97855,102364,110562,95493,112748,86784,105959],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0007094"},{"annotations":[94755],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1902103"},{"annotations":[102365,111624],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0045841"},{"annotations":[99341],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:2000816"},{"annotations":[90259],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0140499"},{"annotations":[109850],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905326"},{"annotations":[91220],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1905191"},{"annotations":[112752],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090267"},{"annotations":[98443,89861,107435,110334,96199,93758,98170,110833],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0045842"},{"annotations":[112754],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905824"},{"annotations":[93759,95669],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1901970"},{"annotations":[97391],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905325"},{"annotations":[90260],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090266"}]},"cv_name":"biological_process","definition":"The cell cycle process in which paired chromosomes are detached from each other. Chromosome separation begins with the release of cohesin complexes from chromosomes; in budding yeast, this includes the cleavage of cohesin complexes along the chromosome arms, followed by the separation of the centromeric regions. Chromosome separation also includes formation of chromatid axes mediated by condensins, and ends with the disentangling of inter-sister catenation catalyzed by topoisomerase II (topo II).","definition_xrefs":["GOC:ai","GOC:mah","GOC:lb","GOC:mtg_cell_cycle","PMID:20352243"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"part_of","term_name":"chromosome segregation","termid":"GO:0007059"}],"gene_count":39,"genes_by_uniquename":{"SJAG_00145":null,"SJAG_00146":null,"SJAG_00460":null,"SJAG_00666":null,"SJAG_00883":null,"SJAG_01082":null,"SJAG_01297":null,"SJAG_01330":null,"SJAG_01515":null,"SJAG_01679":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_01956":null,"SJAG_02104":null,"SJAG_02169":null,"SJAG_02186":null,"SJAG_02336":null,"SJAG_02380":null,"SJAG_02451":null,"SJAG_02498":null,"SJAG_02542":null,"SJAG_03048":null,"SJAG_03126":null,"SJAG_03327":null,"SJAG_03350":null,"SJAG_03351":null,"SJAG_03353":null,"SJAG_03681":null,"SJAG_04126":null,"SJAG_04259":null,"SJAG_04457":null,"SJAG_04573":null,"SJAG_04661":null,"SJAG_04699":null,"SJAG_04884":null,"SJAG_04968":null,"SJAG_04999":null,"SJAG_05236":null,"SJAG_05329":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"chromosome separation","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0034500"],"synonyms":[{"name":"chromatid release","type":"related"},{"name":"rDNA separation","type":"narrow"}],"termid":"GO:0051304","terms_by_termid":{"GO:0007094":null,"GO:0033316":null,"GO:0045841":null,"GO:0045842":null,"GO:0051306":null,"GO:0051307":null,"GO:0051755":null,"GO:0090266":null,"GO:0090267":null,"GO:0140499":null,"GO:1901970":null,"GO:1902103":null,"GO:1902426":null,"GO:1905191":null,"GO:1905318":null,"GO:1905325":null,"GO:1905326":null,"GO:1905824":null,"GO:2000816":null}}


id: PBO:0041673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CADM1 antisense RNA 1","termid":"PBO:0041673"}


id: PBO:0057093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 190a","termid":"PBO:0057093"}


id: PBO:0075054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-17","termid":"PBO:0075054"}


id: PBO:0038856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAMTS like 3","termid":"PBO:0038856"}


id: SO:0001091
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Binding site for any chemical group (co-enzyme, prosthetic group, etc.).","definition_xrefs":["EBIBS:GAR"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0001091 non_covalent_binding_site (obsolete SO:0001091)","synonyms":[{"name":"binding","type":"related"},{"name":"binding site","type":"related"},{"name":"non covalent binding site","type":"exact"}],"termid":"SO:0001091"}


id: PBO:0031890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial iron-sulfur cluster assembly protein Iba57 (predicted)","termid":"PBO:0031890"}


id: GO:0006576
data:
  {"annotated_genes":["SJAG_03288","SJAG_04130","SJAG_00043","SJAG_04481","SJAG_04546","SJAG_02505","SJAG_01455","SJAG_05007","SJAG_03167","SJAG_03632","SJAG_04904"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96828],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006595"},{"annotations":[84958],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033387"},{"annotations":[83485],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009447"},{"annotations":[107233],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0010967"},{"annotations":[98817,109436],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008295"},{"annotations":[98640],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008216"},{"annotations":[109437],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006597"},{"annotations":[110725,99564,100445,87623],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000162"},{"annotations":[87624,99565],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006568"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways occurring at the level of individual cells involving any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters.","definition_xrefs":["GOC:jl","ISBN:0395825172"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amine metabolic process","termid":"GO:0009308"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00043":null,"SJAG_01455":null,"SJAG_02505":null,"SJAG_03167":null,"SJAG_03288":null,"SJAG_03632":null,"SJAG_04130":null,"SJAG_04481":null,"SJAG_04546":null,"SJAG_04904":null,"SJAG_05007":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"biogenic amine metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"biogenic amine metabolism","type":"exact"},{"name":"cellular biogenic amine metabolic process","type":"exact"}],"termid":"GO:0006576","terms_by_termid":{"GO:0000162":null,"GO:0006568":null,"GO:0006595":null,"GO:0006597":null,"GO:0008216":null,"GO:0008295":null,"GO:0009447":null,"GO:0010967":null,"GO:0033387":null}}


id: PBO:0074014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 6 pseudogene 5","termid":"PBO:0074014"}


id: PBO:0030451
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-growth_auxotrophic_for_lysine_and_methionine","termid":"PBO:0030451"}


id: PBO:0024472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sec14 cytosolic factor family, glycerophospholipid-transfer protein Crs102 (predicted)","termid":"PBO:0024472"}


id: PBO:0044270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-X-C motif chemokine ligand 10","termid":"PBO:0044270"}


id: PBO:0078813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA nucleotidyl transferase 1","termid":"PBO:0078813"}


id: PBO:0043655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPI coat complex subunit zeta 1","termid":"PBO:0043655"}


id: PBO:0027263
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_single_or_double_cell_division,_elongated_multiseptate_cell","termid":"PBO:0027263"}


id: GO:0071889
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a 14-3-3 protein. A 14-3-3 protein is any of a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimers within all eukaryotic cells, and have been implicated in the modulation of distinct biological processes by binding to specific phosphorylated sites on diverse target proteins, thereby forcing conformational changes or influencing interactions between their targets and other molecules. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxy-terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins.","definition_xrefs":["PMID:15167810","GOC:mah","PMID:19575580","GOC:cna"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"14-3-3 protein binding","termid":"GO:0071889"}


id: PBO:0002604
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GAG acceptor","termid":"PBO:0002604"}


id: PBO:0048210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-aminobutyric acid type A receptor subunit gamma3","termid":"PBO:0048210"}


id: PBO:0090053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane LMBR1-like multi-pass membrane protein, human LMBRD2 ortholog, implicated in signalling","termid":"PBO:0090053"}


id: FYPO:0007365
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphoenolpyruvate measured in the cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular phosphoenolpyruvate level","synonyms":[{"name":"decreased cellular PEP level","type":"exact"},{"name":"decreased cellular phosphoenolpyruvate level during mitotic cell cycle","type":"related"},{"name":"decreased cellular phosphoenolpyruvate level during vegetative growth","type":"exact"},{"name":"decreased level of phosphoenolpyruvate in cell","type":"exact"},{"name":"reduced cellular phosphoenolpyruvate level","type":"exact"}],"termid":"FYPO:0007365"}


id: PBO:0061537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOP2/Sun RNA methyltransferase 2","termid":"PBO:0061537"}


id: GO:0048661
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of smooth muscle cell proliferation.","definition_xrefs":["CL:0000192","GOC:ebc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"is_a","term_name":"regulation of smooth muscle cell proliferation","termid":"GO:0048660"},{"relation_name":"positively_regulates","term_name":"smooth muscle cell proliferation","termid":"GO:0048659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of smooth muscle cell proliferation","synonyms":[{"name":"activation of smooth muscle cell proliferation","type":"narrow"},{"name":"positive regulation of SMC proliferation","type":"exact"},{"name":"stimulation of smooth muscle cell proliferation","type":"narrow"},{"name":"up regulation of smooth muscle cell proliferation","type":"exact"},{"name":"up-regulation of smooth muscle cell proliferation","type":"exact"},{"name":"upregulation of smooth muscle cell proliferation","type":"exact"}],"termid":"GO:0048661"}


id: GO:0044063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The alteration by a symbiont organism of the functioning of a host neurophysiological process, an organ system process carried out by any of the organs or tissues of neurological system.","definition_xrefs":["MITRE:tk"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by symbiont of host nervous system process (obsolete GO:0044063)","synonyms":[{"name":"modulation by symbiont of host neurological system process","type":"exact"},{"name":"regulation by symbiont of host neurological system process","type":"exact"}],"termid":"GO:0044063"}


id: FYPO:0005122
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA transcribed from middle meiotic genes measured in a cell is lower than normal during the meiotic cell cycle. Middle meiotic genes are normally transcribed during meiotic nuclear division.","definition_xrefs":["PomBase:mah","PMID:17927811","PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during meiotic cell cycle","termid":"FYPO:0004630"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"decreased level of middle meiotic gene mRNA during meiotic cell cycle","synonyms":[{"name":"decreased level of middle meiosis gene mRNA during meiotic cell cycle","type":"exact"},{"name":"decreased level of middle meiotic gene RNA during meiotic cell cycle","type":"exact"},{"name":"decreased level of middle meiotic gene transcripts during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0005122"}


id: PBO:0012861
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not functionally complement S. cerevisiae CLN1/2/3","termid":"PBO:0012861"}


id: PBO:0076406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein associated factor 4","termid":"PBO:0076406"}


id: GO:1905520
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of presynaptic active zone assembly.","definition_xrefs":["GOC:rl","PMID:15797875","GOC:TermGenie","GO_REF:0000058","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of presynaptic active zone assembly","termid":"GO:1905518"},{"relation_name":"is_a","term_name":"positive regulation of presynapse assembly","termid":"GO:1905608"},{"relation_name":"positively_regulates","term_name":"presynaptic active zone assembly","termid":"GO:1904071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of presynaptic active zone assembly","synonyms":[{"name":"activation of pre-synaptic active zone assembly","type":"narrow"},{"name":"activation of pre-synaptic active zone component assembly","type":"narrow"},{"name":"activation of pre-synaptic active zone component formation","type":"narrow"},{"name":"activation of pre-synaptic active zone formation","type":"narrow"},{"name":"activation of presynaptic active zone assembly","type":"narrow"},{"name":"activation of presynaptic active zone formation","type":"narrow"},{"name":"positive regulation of pre-synaptic active zone assembly","type":"exact"},{"name":"positive regulation of pre-synaptic active zone component assembly","type":"narrow"},{"name":"positive regulation of pre-synaptic active zone component formation","type":"narrow"},{"name":"positive regulation of pre-synaptic active zone formation","type":"exact"},{"name":"positive regulation of presynaptic active zone formation","type":"exact"},{"name":"up regulation of pre-synaptic active zone assembly","type":"exact"},{"name":"up regulation of pre-synaptic active zone component assembly","type":"narrow"},{"name":"up regulation of pre-synaptic active zone component formation","type":"narrow"},{"name":"up regulation of pre-synaptic active zone formation","type":"exact"},{"name":"up regulation of presynaptic active zone assembly","type":"exact"},{"name":"up regulation of presynaptic active zone formation","type":"exact"},{"name":"up-regulation of pre-synaptic active zone assembly","type":"exact"},{"name":"up-regulation of pre-synaptic active zone component assembly","type":"narrow"},{"name":"up-regulation of pre-synaptic active zone component formation","type":"narrow"},{"name":"up-regulation of pre-synaptic active zone formation","type":"exact"},{"name":"up-regulation of presynaptic active zone assembly","type":"exact"},{"name":"up-regulation of presynaptic active zone formation","type":"exact"},{"name":"upregulation of pre-synaptic active zone assembly","type":"exact"},{"name":"upregulation of pre-synaptic active zone component assembly","type":"narrow"},{"name":"upregulation of pre-synaptic active zone component formation","type":"narrow"},{"name":"upregulation of pre-synaptic active zone formation","type":"exact"},{"name":"upregulation of presynaptic active zone assembly","type":"exact"},{"name":"upregulation of presynaptic active zone formation","type":"exact"}],"termid":"GO:1905520"}


id: GO:0031371
data:
  {"annotated_genes":["SJAG_00320","SJAG_02918","SJAG_02319","SJAG_03006","SJAG_00293"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[112861],"is_not":false,"summary":null,"term":"GO:0031371"},{"annotations":[87285,112281,114901,89439],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033503"}]},"cv_name":"cellular_component","definition":"Any complex that possesses ubiquitin conjugating enzyme activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00293":null,"SJAG_00320":null,"SJAG_02319":null,"SJAG_02918":null,"SJAG_03006":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"ubiquitin conjugating enzyme complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"E2 complex","type":"related"}],"termid":"GO:0031371","terms_by_termid":{"GO:0031371":null,"GO:0033503":null}}


id: PBO:0028176
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_Golgi_membrane","termid":"PBO:0028176"}


id: PBO:0068250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 28S ribosomal N2","termid":"PBO:0068250"}


id: PBO:0062345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily K member 4 pseudogene","termid":"PBO:0062345"}


id: SO:0001653
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transcription factor binding site of variable direct repeats of the sequence PuGGTCA spaced by five nucleotides (DR5) found in the promoters of retinoic acid-responsive genes, to which retinoic acid receptors bind.","definition_xrefs":["PMID:19917671","PMID:11327309"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TF_binding_site","termid":"SO:0000235"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinoic_acid_responsive_element","synonyms":[{"name":"RARE","type":"exact"},{"name":"retinoic acid responsive element","type":"exact"}],"termid":"SO:0001653"}


id: GO:0001837
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell.","definition_xrefs":["GOC:dph","PMID:14701881"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchymal cell differentiation","termid":"GO:0048762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial to mesenchymal transition","synonyms":[{"name":"EMT","type":"exact"},{"name":"epithelial-mesenchymal transition","type":"exact"},{"name":"mesenchymal cell differentiation from epithelial cell","type":"exact"}],"termid":"GO:0001837"}


id: PBO:0031797
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_duration_of_mitotic_G2/M_phase_transition_(obsolete_FYPO:0000404)","termid":"PBO:0031797"}


id: PBO:0041117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"B-TFIID TATA-box binding protein associated factor 1","termid":"PBO:0041117"}


id: GO:0060669
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the embryonic placenta is generated and organized.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"embryonic placenta development","termid":"GO:0001892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic placenta morphogenesis","termid":"GO:0060669"}


id: FYPO:0001152
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell when the cell is subject to nitrogen starvation is lower than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level","termid":"FYPO:0000826"},{"relation_name":"is_a","term_name":"altered level of substance in cell during nitrogen starvation","termid":"FYPO:0004139"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0006551","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased RNA level during nitrogen starvation","synonyms":[{"name":"decreased RNA accumulation during nitrogen starvation","type":"related"},{"name":"decreased RNA level during nitrogen depletion","type":"exact"},{"name":"decreased RNA level during nitrogen deprivation","type":"exact"},{"name":"decreased transcript level during nitrogen starvation","type":"exact"},{"name":"reduced RNA level during nitrogen starvation","type":"exact"}],"termid":"FYPO:0001152"}


id: FYPO:0008090
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitotic anaphase begins at the normal (i.e. indistinguishable from wild type) time relative to other cell cycle events.","direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell cycle phase","termid":"FYPO:0003833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal onset of mitotic anaphase B","termid":"FYPO:0008090"}


id: PBO:0055990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeats and transmembrane domains 2","termid":"PBO:0055990"}


id: SO:1001281
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons.","definition_xrefs":["SO:ke","PMID:12519954"],"direct_ancestors":[{"relation_name":"is_a","term_name":"three_prime_recoding_site","termid":"SO:1001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flanking_three_prime_quadruplet_recoding_signal","synonyms":[{"name":"flanking three prime quadruplet recoding signal","type":"exact"}],"termid":"SO:1001281"}


id: PBO:0027475
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_age-related_vacuolar_changes","termid":"PBO:0027475"}


id: GO:0006196
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of AMP, adenosine monophosphate.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide catabolic process","termid":"GO:0009154"},{"relation_name":"is_a","term_name":"purine ribonucleoside monophosphate catabolic process","termid":"GO:0009169"},{"relation_name":"is_a","term_name":"AMP metabolic process","termid":"GO:0046033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"AMP catabolic process","synonyms":[{"name":"AMP breakdown","type":"exact"},{"name":"AMP catabolism","type":"exact"},{"name":"AMP degradation","type":"exact"}],"termid":"GO:0006196"}


id: GO:0019122
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of peptidyl-D-alanine, by either racemization or from peptidyl-L-serine.","definition_xrefs":["RESID:AA0191"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-L-amino acid racemization","termid":"GO:0018085"},{"relation_name":"is_a","term_name":"peptidyl-alanine modification","termid":"GO:0018194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0006520"],"is_obsolete":false,"name":"peptidyl-D-alanine racemization","synonyms":[{"name":"alanine racemization","type":"broad"}],"termid":"GO:0019122"}


id: GO:0007435
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the salivary gland are generated and organized.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gland morphogenesis","termid":"GO:0022612"},{"relation_name":"part_of","term_name":"salivary gland development","termid":"GO:0007431"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"salivary gland morphogenesis","termid":"GO:0007435"}


id: PBO:0113323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein kinase; related to and functionally redundant with Elm1p and Sak1p for the phosphorylation and activation of Snf1p; localizes to cytosol and peroxisomes; functionally orthologous to LKB1, a mammalian kinase associated with Peutz-Jeghers cancer-susceptibility syndrome; TOS3 has a paralog, SAK1, that arose from the whole genome duplication","termid":"PBO:0113323"}


id: PBO:0040536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta-1,3-galactosyltransferase 2","termid":"PBO:0040536"}


id: PBO:0074200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 39 member 10","termid":"PBO:0074200"}


id: PBO:0088387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase activating protein, Tsc2 paralog","termid":"PBO:0088387"}


id: PBO:0091979
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf antidote-like meiotic drive suppressor Wtf20","termid":"PBO:0091979"}


id: PBO:0086271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein whose expression is induced during sporulation; not required for sporulation; heterologous expression in E. coli induces the SOS response that senses DNA damage","termid":"PBO:0086271"}


id: PBO:0078542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 34","termid":"PBO:0078542"}


id: PBO:0074447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small lysine rich protein 1","termid":"PBO:0074447"}


id: GO:1903063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of reverse cholesterol transport.","definition_xrefs":["PMID:23931754","GOC:rl","GOC:TermGenie","GOC:BHF","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cholesterol transport","termid":"GO:0032375"},{"relation_name":"is_a","term_name":"regulation of reverse cholesterol transport","termid":"GO:1903062"},{"relation_name":"negatively_regulates","term_name":"reverse cholesterol transport","termid":"GO:0043691"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of reverse cholesterol transport","synonyms":[{"name":"down regulation of reverse cholesterol transport","type":"exact"},{"name":"down-regulation of reverse cholesterol transport","type":"exact"},{"name":"downregulation of reverse cholesterol transport","type":"exact"},{"name":"inhibition of reverse cholesterol transport","type":"narrow"}],"termid":"GO:1903063"}


id: PBO:0065058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline and arginine rich end leucine rich repeat protein","termid":"PBO:0065058"}


id: FYPO:0007946
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of ubiquitination of one or more specific proteins, or of specific protein sites, is decreased.","definition_xrefs":["PomBase:val"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein ubiquitination","termid":"FYPO:0006977"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0002274","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein ubiquitination","termid":"FYPO:0007946"}


id: PBO:0089673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multispanning 7TM plasma membrane rhodopsin family protein, implicated in signalling","termid":"PBO:0089673"}


id: PBO:0063069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pannexin 2","termid":"PBO:0063069"}


id: GO:0002862
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of an inflammatory response to an antigenic stimulus.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of inflammatory response to antigenic stimulus","termid":"GO:0002861"},{"relation_name":"is_a","term_name":"negative regulation of inflammatory response","termid":"GO:0050728"},{"relation_name":"is_a","term_name":"negative regulation of immune response","termid":"GO:0050777"},{"relation_name":"negatively_regulates","term_name":"inflammatory response to antigenic stimulus","termid":"GO:0002437"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of inflammatory response to antigenic stimulus","synonyms":[{"name":"down regulation of inflammatory response to antigenic stimulus","type":"exact"},{"name":"down-regulation of inflammatory response to antigenic stimulus","type":"exact"},{"name":"downregulation of inflammatory response to antigenic stimulus","type":"exact"},{"name":"inhibition of inflammatory response to antigenic stimulus","type":"narrow"}],"termid":"GO:0002862"}


id: GO:0003118
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels as a result of norepinephrine released by nerve endings.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vasoconstriction by norepinephrine","termid":"GO:0003116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of vasoconstriction by neuronal norepinephrine","synonyms":[{"name":"regulation of vasoconstriction by neuronal noradrenaline","type":"exact"}],"termid":"GO:0003118"}


id: PBO:0014312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cdc48p-Npl4p-Vms1p AAA ATPase complex subunit involved in ubiquitin-dependent protein catabolic process Vms1 (predicted)","termid":"PBO:0014312"}


id: GO:0019271
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of the hydroxamate iron transport compound aerobactin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Aerobactin (C22H36N4O13) is a conjugate of 6-(N-acetyl-N-hydroxylamine)-2-aminohexanoic acid and citric acid.","definition_xrefs":["GOC:ai","PMID:23192658"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tricarboxylic acid transport","termid":"GO:0006842"},{"relation_name":"is_a","term_name":"modified amino acid transport","termid":"GO:0072337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"aerobactin transport","termid":"GO:0019271"}


id: PBO:0000741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho family","termid":"PBO:0000741"}


id: GO:0019503
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of stachydrine, N-methylproline methylbetaine, the betaine derivative of L-proline.","definition_xrefs":["PMID:14367364","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid betaine biosynthetic process","termid":"GO:0006578"},{"relation_name":"is_a","term_name":"alkaloid biosynthetic process","termid":"GO:0009821"},{"relation_name":"is_a","term_name":"L-proline betaine metabolic process","termid":"GO:0019502"},{"relation_name":"is_a","term_name":"L-amino acid biosynthetic process","termid":"GO:0170034"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid biosynthetic process","termid":"GO:0170043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281","GO:0019748"],"is_obsolete":false,"name":"L-proline betaine biosynthetic process","synonyms":[{"name":"stachydrine anabolism","type":"exact"},{"name":"stachydrine biosynthesis","type":"exact"},{"name":"stachydrine biosynthetic process","type":"exact"},{"name":"stachydrine formation","type":"exact"},{"name":"stachydrine synthesis","type":"exact"}],"termid":"GO:0019503"}


id: GO:1990463
data:
  {"annotated_genes":["SJAG_00596","SJAG_04947"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[96148,100583],"is_not":false,"summary":null,"term":"GO:1990463"}]},"cv_name":"cellular_component","definition":"A protein complex that is anchored at the cortical face of the plasma membrane, and contains proteins involved in regulating cell cycle progression. In Schizosaccharomyces pombe, lateral cortical nodes are several megadaltons in size, and contain Slf1, which anchors the complex at the membrane, and the methyltransferase Skb1 in stoichiometric quantities, and may contain other proteins.","definition_xrefs":["GOC:mah","PMID:25009287"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"lateral cell cortex","termid":"GO:0097575"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00596":null,"SJAG_04947":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005938"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0005938","GO:0032991"],"is_obsolete":false,"name":"lateral cortical node","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Skb1-containing cortical node","type":"exact"}],"termid":"GO:1990463","terms_by_termid":{"GO:1990463":null}}


id: PBO:0068937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 180, pseudogene","termid":"PBO:0068937"}


id: PBO:0080529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WASH complex subunit 2A","termid":"PBO:0080529"}


id: FYPO:0007175
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the plasma membrane surrounding the cell division site is abolished during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to plasma membrane at cell division site during vegetative growth","termid":"FYPO:0006936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abolished protein localization to plasma membrane at cell division site during mitotic interphase","synonyms":[{"name":"abolished protein localisation to plasma membrane at cell division site during mitotic interphase","type":"exact"},{"name":"abolished protein localization in plasma membrane at cell division site during mitotic interphase","type":"exact"},{"name":"abolished protein localization to cell membrane at cell division site during mitotic interphase","type":"exact"},{"name":"abolished protein localization to plasma membrane at cell division site during interphase during vegetative growth","type":"exact"},{"name":"abolished protein localization to plasma membrane at cell division site during interphase of mitotic cell cycle","type":"exact"},{"name":"protein localization to plasma membrane at cell division site abolished during mitotic interphase","type":"exact"}],"termid":"FYPO:0007175"}


id: PATO:0001408
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A cellular quality inhering in a bearer by virtue of the bearer's having thin, tail-like projections extending outwards from the cell body.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Ciliated"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular quality","termid":"PATO:0001396"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ciliatedness","termid":"PATO:0001408"}


id: GO:0006585
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of dopamine (3,4-dihydroxyphenylethylamine) from L-tyrosine, via the metabolic precursor 3,4-dihydroxy-L-phenylalanine (L-dopa). Dopamine is a catecholamine neurotransmitter and a metabolic precursor of norepinephrine and epinephrine.","definition_xrefs":["ISBN:0198506732","GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tyrosine metabolic process","termid":"GO:0006570"},{"relation_name":"is_a","term_name":"dopamine biosynthetic process","termid":"GO:0042416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"dopamine biosynthetic process from tyrosine","synonyms":[{"name":"dopamine anabolism from tyrosine","type":"exact"},{"name":"dopamine formation from tyrosine","type":"exact"},{"name":"dopamine synthesis from tyrosine","type":"exact"}],"termid":"GO:0006585"}


id: GO:0060567
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of DNA-dependent transcription termination, the process in which transcription is completed; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.","definition_xrefs":["GOC:txnOH","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of termination of DNA-templated transcription","termid":"GO:0031554"},{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex disassembly","termid":"GO:0043242"},{"relation_name":"is_a","term_name":"negative regulation of DNA-templated transcription","termid":"GO:0045892"},{"relation_name":"negatively_regulates","term_name":"DNA-templated transcription termination","termid":"GO:0006353"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"negatively_regulates","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0008150","GO:0006355","GO:0010467","GO:0006351"],"is_obsolete":false,"name":"negative regulation of termination of DNA-templated transcription","synonyms":[{"name":"negative regulation of DNA-dependent transcription, termination","type":"exact"},{"name":"negative regulation of DNA-templated transcription, termination","type":"exact"},{"name":"negative regulation of termination of DNA-dependent transcription","type":"exact"},{"name":"negative regulation of transcription termination, DNA-dependent","type":"exact"}],"termid":"GO:0060567"}


id: PR:O13741
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An RNA-binding protein 34 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01463","PANTHER:PTHR24011:SF57"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar protein 12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC16E8.06c","secondary_identifiers":["UniProtKB:O13741"],"synonyms":[{"name":"Spom972h-RBM34","type":"exact"}],"termid":"PR:O13741"}


id: FYPO:0005412
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the second meiotic nuclear division begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"delayed onset of meiosis","termid":"FYPO:0000477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of meiosis II","synonyms":[{"name":"delayed meiosis II","type":"exact"},{"name":"delayed onset of second meiotic nuclear division","type":"exact"}],"termid":"FYPO:0005412"}


id: MOD:00998
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a hydrogen atom of an L-tyrosine residue with an iodine atom.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iodinated residue","termid":"MOD:00755"},{"relation_name":"is_a","term_name":"halogenated tyrosine","termid":"MOD:00985"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iodinated tyrosine","synonyms":[{"name":"ITyr","type":"exact"}],"termid":"MOD:00998"}


id: PBO:0050175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 3 pseudogene 31","termid":"PBO:0050175"}


id: PBO:0059005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MMADHC pseudogene 1","termid":"PBO:0059005"}


id: PBO:0082385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Beta 5 subunit of the 20S proteasome; responsible for the chymotryptic activity of the proteasome","termid":"PBO:0082385"}


id: PBO:0059554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded tRNA-Val (GUN)","termid":"PBO:0059554"}


id: PR:Q9UT62
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC513.04 gene.","definition_xrefs":["UniProtKB:Q9UT62","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C513.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC513.04","synonyms":[{"name":"Spom972h-SPAC513.04","type":"exact"}],"termid":"PR:Q9UT62"}


id: FYPO:0001989
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to pH lower than that of standard S. pombe growth media (about 5.8). Cells stop growing (and may die) at a pH that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitive to stress during vegetative growth","termid":"FYPO:0000304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to low pH","synonyms":[{"name":"decreased growth during cellular response to low pH","type":"exact"},{"name":"decreased vegetative cell population growth during cellular response to low pH","type":"exact"},{"name":"hypersensitive to low pH","type":"exact"},{"name":"sensitive to low pH during mitotic cell cycle","type":"related"},{"name":"sensitive to low pH during vegetative growth","type":"exact"}],"termid":"FYPO:0001989"}


id: PBO:0026995
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_during_meiosis_I","termid":"PBO:0026995"}


id: GO:0071224
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptidoglycan stimulus. Peptidoglycan is a bacterial cell wall macromolecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to peptidoglycan","termid":"GO:0032494"},{"relation_name":"is_a","term_name":"cellular response to molecule of bacterial origin","termid":"GO:0071219"},{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to peptidoglycan","termid":"GO:0071224"}


id: GO:0008302
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Recruitment and organization of actin filaments in female germline ring canals.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin filament organization","termid":"GO:0007015"},{"relation_name":"part_of","term_name":"female germline ring canal formation","termid":"GO:0007301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0030036"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0007010","GO:0030036"],"is_obsolete":false,"name":"female germline ring canal formation, actin assembly","synonyms":[{"name":"nurse cell ring canal formation, actin assembly","type":"narrow"},{"name":"ovarian ring canal formation, actin assembly","type":"narrow"},{"name":"ring canal formation, actin assembly","type":"broad"}],"termid":"GO:0008302"}


id: PBO:0059804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 30","termid":"PBO:0059804"}


id: FYPO:0003591
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of one protein to a protein complex is abnormal. The protein whose binding to the protein complex is affected may be encoded by the mutated gene, or may be encoded by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein-protein interaction","termid":"FYPO:0000704"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0000702","FYPO:0001985"],"is_obsolete":false,"name":"abnormal protein complex binding","termid":"FYPO:0003591"}


id: PBO:0044946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydrofolate reductase pseudogene 1","termid":"PBO:0044946"}


id: PR:Q9HDX8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An L-gulonolactone oxidase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-arabinono-1,4-lactone oxidase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB1A10.12c","secondary_identifiers":["UniProtKB:Q9HDX8"],"synonyms":[{"name":"ALO (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"L-galactono-gamma-lactone oxidase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPAPB1A10.12c","type":"related"},{"name":"Spom972h-Gulo","type":"exact"}],"termid":"PR:Q9HDX8"}


id: GO:2000124
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of endocannabinoid signaling pathway.","definition_xrefs":["GOC:mah","PMID:15550444"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of G protein-coupled receptor signaling pathway","termid":"GO:0008277"},{"relation_name":"regulates","term_name":"endocannabinoid signaling pathway","termid":"GO:0071926"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of endocannabinoid signaling pathway","synonyms":[{"name":"regulation of endocannabinoid signalling pathway","type":"exact"}],"termid":"GO:2000124"}


id: PBO:0089705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F1-FO ATP synthase beta subunit Atp2","termid":"PBO:0089705"}


id: PBO:0039518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 33B","termid":"PBO:0039518"}


id: GO:0090406
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A tubular cell projection that is part of a pollen tube cell and extends from a pollen grain.","definition_xrefs":["PO:0025281","PO:0025195","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection","termid":"GO:0120025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"pollen tube","termid":"GO:0090406"}


id: GO:0033001
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex composed of an Fc-gamma RIII alpha chain and an Fc-epsilon RI gamma chain dimer with or without an Fc-epsilon RI beta chain and additional signaling components. The complex functions primarily as an activating receptor for IgG.","definition_xrefs":["ISBN:0781735149","PMID:12413532","GOC:add","PMID:11244038"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Fc receptor complex","termid":"GO:0032997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"Fc-gamma receptor III complex","synonyms":[{"name":"FcgRIII complex","type":"exact"},{"name":"IgG receptor complex","type":"broad"},{"name":"immunoglobulin G receptor complex","type":"broad"}],"termid":"GO:0033001"}


id: GO:0080059
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-arabinose + a flavonol = UDP + a flavonol 3-O-D-arabinoside.","definition_xrefs":["PMID:18757557"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glycosyltransferase activity","termid":"GO:0008194"},{"relation_name":"is_a","term_name":"arabinosyltransferase activity","termid":"GO:0052636"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016757"],"is_obsolete":false,"name":"flavonol 3-O-arabinosyltransferase activity","termid":"GO:0080059"}


id: GO:0003114
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the secretion of norepinephrine into the bloodstream increases the rate of heart muscle contraction.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of heart rate by norepinephrine","termid":"GO:0003066"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of heart rate by circulating norepinephrine","synonyms":[{"name":"positive regulation of heart rate by circulating noradrenaline","type":"exact"}],"termid":"GO:0003114"}


id: GO:0048712
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of astrocyte differentiation.","definition_xrefs":["GOC:vp","PMID:15139015"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of glial cell differentiation","termid":"GO:0045686"},{"relation_name":"is_a","term_name":"regulation of astrocyte differentiation","termid":"GO:0048710"},{"relation_name":"negatively_regulates","term_name":"astrocyte differentiation","termid":"GO:0048708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of astrocyte differentiation","synonyms":[{"name":"down regulation of astrocyte differentiation","type":"exact"},{"name":"down-regulation of astrocyte differentiation","type":"exact"},{"name":"downregulation of astrocyte differentiation","type":"exact"},{"name":"inhibition of astrocyte differentiation","type":"narrow"}],"termid":"GO:0048712"}


id: PBO:0054307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1699","termid":"PBO:0054307"}


id: MOD:00665
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-alanine residue to a methylated alanine, such as N-methylalanine, N,N-dimethylalanine, or N,N,N-trimethylalanine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"},{"relation_name":"is_a","term_name":"modified L-alanine residue","termid":"MOD:00901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"methylated alanine","synonyms":[{"name":"MeAla","type":"exact"}],"termid":"MOD:00665"}


id: PBO:0033778
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_guanyl-nucleotide_exchange_factor_activity","termid":"PBO:0033778"}


id: GO:1904725
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any TFIIB-class transcription factor binding that is involved in negative regulation of DNA-templated transcription.","definition_xrefs":["PMID:12461786","GO_REF:0000061","GOC:TermGenie","GOC:rb"],"gene_count":0,"genotype_count":0,"name":"obsolete TFIIB-class transcription factor binding involved in negative regulation of transcription (obsolete GO:1904725)","synonyms":[{"name":"TFIIB-class transcription factor binding involved in down regulation of gene-specific transcription","type":"related"},{"name":"TFIIB-class transcription factor binding involved in down regulation of transcription, DNA-dependent","type":"exact"},{"name":"TFIIB-class transcription factor binding involved in down-regulation of gene-specific transcription","type":"related"},{"name":"TFIIB-class transcription factor binding involved in down-regulation of transcription, DNA-dependent","type":"exact"},{"name":"TFIIB-class transcription factor binding involved in downregulation of gene-specific transcription","type":"related"},{"name":"TFIIB-class transcription factor binding involved in downregulation of transcription, DNA-dependent","type":"exact"},{"name":"TFIIB-class transcription factor binding involved in inhibition of gene-specific transcription","type":"related"},{"name":"TFIIB-class transcription factor binding involved in inhibition of transcription, DNA-dependent","type":"narrow"},{"name":"TFIIB-class transcription factor binding involved in negative regulation of cellular transcription, DNA-dependent","type":"exact"},{"name":"TFIIB-class transcription factor binding involved in negative regulation of gene-specific transcription","type":"related"},{"name":"TFIIB-class transcription factor binding involved in negative regulation of transcription, DNA-dependent","type":"exact"},{"name":"TFIIB-class transcription factor binding involved in negative regulation of transcription, DNA-templated","type":"exact"},{"name":"TFIIB-class transcription factor binding involved in transcription repressor activity","type":"related"}],"termid":"GO:1904725"}


id: PBO:0000399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-DNL","termid":"PBO:0000399"}


id: PBO:0080479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vault RNA 2-2, pseudogene","termid":"PBO:0080479"}


id: GO:0036101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of leukotriene B4, a leukotriene composed of (6Z,8E,10E,14Z)-eicosatetraenoic acid having (5S)- and (12R)-hydroxy substituents.","definition_xrefs":["GOC:yaf","PMID:9799565"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukotriene catabolic process","termid":"GO:0036100"},{"relation_name":"is_a","term_name":"leukotriene B4 metabolic process","termid":"GO:0036102"},{"relation_name":"is_a","term_name":"long-chain fatty acid catabolic process","termid":"GO:0042758"},{"relation_name":"is_a","term_name":"icosanoid catabolic process","termid":"GO:1901523"},{"relation_name":"is_a","term_name":"organic hydroxy compound catabolic process","termid":"GO:1901616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629","GO:0044248"],"is_obsolete":false,"name":"leukotriene B4 catabolic process","synonyms":[{"name":"LTB4 catabolism","type":"exact"},{"name":"leukotriene B4 breakdown","type":"exact"},{"name":"leukotriene B4 catabolism","type":"exact"},{"name":"leukotriene B4 degradation","type":"exact"}],"termid":"GO:0036101"}


id: GO:0050279
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sepiapterin + H2O = xanthopterin-B2 + NH3.","definition_xrefs":["EC:3.5.4.24","MetaCyc:SEPIAPTERIN-DEAMINASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"},{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0016810","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"sepiapterin deaminase activity","secondary_identifiers":["RHEA:14025"],"synonyms":[{"name":"sepiapterin aminohydrolase activity","type":"related"}],"termid":"GO:0050279"}


id: GO:0007413
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The collection of axons into a bundle of rods, known as a fascicle.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron recognition","termid":"GO:0008038"},{"relation_name":"is_a","term_name":"neuron projection fasciculation","termid":"GO:0106030"},{"relation_name":"part_of","term_name":"axon development","termid":"GO:0061564"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"axonal fasciculation","synonyms":[{"name":"fasciculation of neuron","type":"related"}],"termid":"GO:0007413"}


id: GO:0005575
data:
  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